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class="pap-last-modified-date">November 25, 2024</span></p> <div class="pap-about-text"> <p><em>GENOME RESEARCH</em> POSTS ADVANCE ARTICLES, INCLUDING ACCEPTED MANUSCRIPTS, FOR RAPID ACCESS TO THE LATEST RESEARCH. </p> <p>Advance Articles are published online ahead of print. The online first release date serves as the official date of publication. Upon release of the article's scheduled issue, the advance article (which may not be the final version) will move from this <span class="pap-index-page-name">Advance Online Articles</span> index to the issue's full Table of Contents in its final edited form. </p> <p>Advance Articles also include <span class="accepted-preprints-name"><a href="/site/misc/acc_preprints.xhtml">Accepted Manuscripts</a></span>, which are PDF versions of manuscripts that have been peer reviewed and accepted for publication but are not yet copyedited or typeset. They are posted as submitted by the authors, subject to the authors' agreement, and do not reflect the changes that will be made before final publication. The <span class="accepted-preprints-name">Accepted Manuscript</span> remains on the <span class="pap-index-page-name">Advance Online Articles</span> page until it is either replaced by a copyedited and typeset version and/or when the final version of the article is published in an issue. </p> </div> </div> <form method="get" action="/gca"> <div class="gca-buttons"> <input type="reset" name="reset" value="Clear" /> <input type="submit" name="submit" value="Get All Checked Abstracts" /> </div> <div class="toc-level level1"> <h2 id="citgp-2024-11-26"><a class="toc-section-return" href="#content-block"></a><span>November 26, 2024</span></h2> <ul class="cit-list"> <div class="cit creative-commons creative-commons-by-nc/4.0/ is-early-release has-earlier-version"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;gr.279037.124v2" /><label for="gca-form-cb-d77227e5281">Select this article</label></div> <div class="cit-metadata"><span class="cit-first-element cit-title">Binding profiles for 961 <em>Drosophila</em> and <em>C. elegans</em> transcription factors reveal tissue-specific regulatory relationships </span><ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Michelle Kudron</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Louis Gevirtzman</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Alec Victorsen</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Bridget C. Lear</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Jiahao Gao</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Jinrui Xu</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Swapna Samanta</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Emily Frink</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Adri Tran-Pearson</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Chau Huynh</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Dionne Vafeados</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Ann Hammonds</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">William Fisher</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Martha Wall</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Greg Wesseling</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Vanessa Hernandez</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Zhichun Lin</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Mary Kasparian</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Kevin White</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Ravi Allada</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Mark Gerstein</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">LaDeana Hillier</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Susan E. Celniker</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Valerie Reinke</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Robert H. Waterston</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">October 22, 2024</span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>October 22, 2024<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.279037.124 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/early/2024/11/26/gr.279037.124.abstract" rel="abstract">Abstract</a></li> <li><a href="/content/early/2024/11/26/gr.279037.124.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> <li class="last-item"><a href="/content/early/2024/11/26/gr.279037.124/suppl/DC1" rel="supplemental-data" class="dslink-supplemental-material">Supplemental Material</a></li> </ul> </div> </div> </ul> </div> <div class="gca-buttons"> <input type="reset" name="reset" value="Clear" /> <input type="submit" name="submit" value="Get All Checked Abstracts" /> </div> <div class="toc-level level1"> <h2 id="citgp-2024-11-25"><a class="toc-section-return" href="#content-block"></a><span>November 25, 2024</span></h2> <ul class="cit-list"> <div class="cit creative-commons creative-commons-by-nc/4.0/ is-early-release has-earlier-version"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;gr.278344.123v2" /><label for="gca-form-cb-d77227e4458">Select this article</label></div> <div class="cit-metadata"><span class="cit-first-element cit-title">Analyzing super-enhancer temporal dynamics reveals potential critical enhancers and their gene regulatory networks underlying skeletal muscle development </span><ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Song Zhang</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Chao Wang</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Shenghua Qin</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Choulin Chen</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Yongzhou Bao</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Yuanyuan Zhang</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Lingna Xu</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Qingyou Liu</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Yunxiang Zhao</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Kui Li</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Zhonglin Tang</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Yuwen Liu</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">October 21, 2024</span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>October 21, 2024<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.278344.123 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/early/2024/11/22/gr.278344.123.abstract" rel="abstract">Abstract</a></li> <li><a href="/content/early/2024/11/22/gr.278344.123.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> <li class="last-item"><a href="/content/early/2024/11/22/gr.278344.123/suppl/DC1" rel="supplemental-data" class="dslink-supplemental-material">Supplemental Material</a></li> </ul> </div> </div> <div class="cit openaccess creative-commons creative-commons-by-nc/4.0/ is-early-release has-earlier-version"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;gr.278822.123v1" /><label for="gca-form-cb-d77227e4880">Select this article</label></div> <div class="cit-metadata"><span class="cit-first-element cit-title">A deconvolution framework that uses single-cell sequencing plus a small benchmark dataset for accurate analysis of cell type ratios in complex tissue samples </span><ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Shuai Guo</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Xiaoqian Liu</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Xuesen Cheng</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Yujie Jiang</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Shuangxi Ji</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Qingnan Liang</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Andrew Koval</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Yumei Li</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Leah A. Owen</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Ivana K. Kim</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Ana Aparicio</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Sanghoon Lee</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Anil K. Sood</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Scott Kopetz</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">John Paul Shen</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">John N. Weinstein</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Margaret M. DeAngelis</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Rui Chen</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Wenyi Wang</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">November 25, 2024</span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>November 25, 2024<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.278822.123 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/early/2024/11/22/gr.278822.123.abstract" rel="abstract">Abstract</a></li> <li class="last-item"><a href="/content/early/2024/11/22/gr.278822.123.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> </ul> <span class="cit-flags"><span class="open-access-note">OPEN ACCESS ARTICLE</span><span class="accepted-manuscript">ACCEPTED MANUSCRIPT</span> </span> </div> </div> </ul> </div> <div class="gca-buttons"> <input type="reset" name="reset" value="Clear" /> <input type="submit" name="submit" value="Get All Checked Abstracts" /> </div> <div class="toc-level level1"> <h2 id="citgp-2024-11-22"><a class="toc-section-return" href="#content-block"></a><span>November 22, 2024</span></h2> <ul class="cit-list"> <div class="cit creative-commons creative-commons-by-nc/4.0/ is-early-release has-earlier-version"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;gr.278930.124v1" /><label for="gca-form-cb-d77227e3925">Select this article</label></div> <div class="cit-metadata"><span class="cit-first-element cit-title">Convergent relaxation of molecular constraint in herbivores reveals the changing role of liver and kidney functions across mammalian diets </span><ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Matthew D. Pollard</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Wynn K. Meyer</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Emily E. Puckett</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">November 22, 2024</span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>November 22, 2024<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.278930.124 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/early/2024/11/22/gr.278930.124.abstract" rel="abstract">Abstract</a></li> <li><a href="/content/early/2024/11/22/gr.278930.124.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> <li class="last-item"><a href="/content/early/2024/11/22/gr.278930.124/suppl/DC1" rel="supplemental-data" class="dslink-supplemental-material">Supplemental Material</a></li> </ul> </div> </div> <div class="cit openaccess creative-commons creative-commons-by-nc/4.0/ is-early-release has-earlier-version"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;gr.279430.124v1" /><label for="gca-form-cb-d77227e4164">Select this article</label></div> <div class="cit-metadata"><span class="cit-first-element cit-title">Global identification of mammalian host and nested gene pairs reveal tissue-specific transcriptional interplay </span><ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Bertille Montibus</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">James A. Cain</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Rocio T. Martinez-Nunez</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Rebecca J. Oakey</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">November 22, 2024</span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>November 22, 2024<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.279430.124 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/early/2024/11/22/gr.279430.124.abstract" rel="abstract">Abstract</a></li> <li><a href="/content/early/2024/11/22/gr.279430.124.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> <li class="last-item"><a href="/content/early/2024/11/22/gr.279430.124/suppl/DC1" rel="supplemental-data" class="dslink-supplemental-material">Supplemental Material</a></li> </ul> <span class="cit-flags"><span class="open-access-note">OPEN ACCESS ARTICLE</span> </span> </div> </div> </ul> </div> <div class="gca-buttons"> <input type="reset" name="reset" value="Clear" /> <input type="submit" name="submit" value="Get All Checked Abstracts" /> </div> <div class="toc-level level1"> <h2 id="citgp-2024-11-21"><a class="toc-section-return" href="#content-block"></a><span>November 21, 2024</span></h2> <ul class="cit-list"> <div class="cit creative-commons creative-commons-by-nc/4.0/ is-early-release has-earlier-version"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;gr.279418.124v1" /><label for="gca-form-cb-d77227e3254">Select this article</label></div> <div class="cit-metadata"><span class="cit-first-element cit-title">The chromatin landscape of the histone-possessing <em>Bacteriovorax</em> bacteria </span><ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Georgi K. Marinov</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Benjamin Doughty</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Anshul Kundaje</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">William J Greenleaf</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">November 21, 2024</span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>November 21, 2024<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.279418.124 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/early/2024/11/21/gr.279418.124.abstract" rel="abstract">Abstract</a></li> <li class="last-item"><a href="/content/early/2024/11/21/gr.279418.124.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> </ul> <span class="cit-flags"><span class="accepted-manuscript">ACCEPTED MANUSCRIPT</span> </span> </div> </div> <div class="cit creative-commons creative-commons-by-nc/4.0/ is-early-release has-earlier-version"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;gr.279621.124v1" /><label for="gca-form-cb-d77227e3719">Select this article</label></div> <div class="cit-metadata"><span class="cit-first-element cit-title">KAS-ATAC reveals the genome-wide single-stranded accessible chromatin landscape of the human genome </span><ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Samuel H Kim</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Georgi K. Marinov</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">William Greenleaf</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">November 21, 2024</span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>November 21, 2024<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.279621.124 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/early/2024/11/21/gr.279621.124.abstract" rel="abstract">Abstract</a></li> <li class="last-item"><a href="/content/early/2024/11/21/gr.279621.124.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> </ul> <span class="cit-flags"><span class="accepted-manuscript">ACCEPTED MANUSCRIPT</span> </span> </div> </div> <div class="cit openaccess creative-commons creative-commons-by/4.0/ is-early-release has-earlier-version"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;gr.278944.124v1" /><label for="gca-form-cb-d77227e3475">Select this article</label></div> <div class="cit-metadata"><span class="cit-first-element cit-title">Advancements in prospective single-cell lineage barcoding and their applications in research </span><ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Xiaoli Zhang</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Yirui Huang</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Yajing Yang</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Qi-En Wang</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Lang Li</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">November 21, 2024</span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>November 21, 2024<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.278944.124 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/early/2024/11/21/gr.278944.124.abstract" rel="abstract">Abstract</a></li> <li class="last-item"><a href="/content/early/2024/11/21/gr.278944.124.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> </ul> <span class="cit-flags"><span class="open-access-note">OPEN ACCESS ARTICLE</span> </span> </div> </div> </ul> </div> <div class="gca-buttons"> <input type="reset" name="reset" value="Clear" /> <input type="submit" name="submit" value="Get All Checked Abstracts" /> </div> <div class="toc-level level1"> <h2 id="citgp-2024-11-19"><a class="toc-section-return" href="#content-block"></a><span>November 19, 2024</span></h2> <ul class="cit-list"> <div class="cit openaccess creative-commons creative-commons-by/4.0/ is-early-release has-earlier-version"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;gr.279694.124v1" /><label for="gca-form-cb-d77227e3035">Select this article</label></div> <div class="cit-metadata"><span class="cit-first-element cit-title">Modeling gene interactions in polygenic prediction via geometric deep learning </span><ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Han Li</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Jianyang Zeng</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Michael P Snyder</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Sai Zhang</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">November 19, 2024</span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>November 19, 2024<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.279694.124 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/early/2024/11/19/gr.279694.124.abstract" rel="abstract">Abstract</a></li> <li class="last-item"><a href="/content/early/2024/11/19/gr.279694.124.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> </ul> <span class="cit-flags"><span class="open-access-note">OPEN ACCESS ARTICLE</span><span class="accepted-manuscript">ACCEPTED MANUSCRIPT</span> </span> </div> </div> </ul> </div> <div class="gca-buttons"> <input type="reset" name="reset" value="Clear" /> <input type="submit" name="submit" value="Get All Checked Abstracts" /> </div> <div class="toc-level level1"> <h2 id="citgp-2024-11-14"><a class="toc-section-return" href="#content-block"></a><span>November 14, 2024</span></h2> <ul class="cit-list"> <div class="cit openaccess creative-commons creative-commons-by/4.0/ is-early-release has-earlier-version"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;gr.278402.123v1" /><label for="gca-form-cb-d77227e2381">Select this article</label></div> <div class="cit-metadata"><span class="cit-first-element cit-title">ISWI1 complex proteins facilitate developmental genome editing in <em>Paramecium</em> </span><ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Aditi Singh</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Lilia H盲u脽ermann</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Christiane Emmerich</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Emily Nischwitz</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Brandon KB Seah</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Falk Butter</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Mariusz Nowacki</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Estienne C. Swart</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">November 14, 2024</span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>November 14, 2024<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.278402.123 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/early/2024/11/13/gr.278402.123.abstract" rel="abstract">Abstract</a></li> <li class="last-item"><a href="/content/early/2024/11/13/gr.278402.123.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> </ul> <span class="cit-flags"><span class="open-access-note">OPEN ACCESS ARTICLE</span><span class="accepted-manuscript">ACCEPTED MANUSCRIPT</span> </span> </div> </div> <div class="cit openaccess creative-commons creative-commons-by-nc/4.0/ is-early-release has-earlier-version"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;gr.279448.124v1" /><label for="gca-form-cb-d77227e2658">Select this article</label></div> <div class="cit-metadata"><span class="cit-first-element cit-title">High-quality sika deer omics data and integrative analysis reveal genic and cellular regulation of antler regeneration </span><ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Zihe Li</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Ziyu Xu</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Lei Zhu</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Tao Qin</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Jinrui Ma</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Zhanying Feng</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Huishan Yue</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Qing Guan</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Botong Zhou</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Ge Han</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Guokun Zhang</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Chunyi Li</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Shuaijun Jia</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Qiang Qiu</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Dingjun Hao</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Yong Wang</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Wen Wang</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">November 14, 2024</span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>November 14, 2024<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.279448.124 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/early/2024/11/13/gr.279448.124.abstract" rel="abstract">Abstract</a></li> <li class="last-item"><a href="/content/early/2024/11/13/gr.279448.124.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> </ul> <span class="cit-flags"><span class="open-access-note">OPEN ACCESS ARTICLE</span><span class="accepted-manuscript">ACCEPTED MANUSCRIPT</span> </span> </div> </div> </ul> </div> <div class="gca-buttons"> <input type="reset" name="reset" value="Clear" /> <input type="submit" name="submit" value="Get All Checked Abstracts" /> </div> <div class="toc-level level1"> <h2 id="citgp-2024-11-13"><a class="toc-section-return" href="#content-block"></a><span>November 13, 2024</span></h2> <ul class="cit-list"> <div class="cit creative-commons creative-commons-by-nc/4.0/ is-early-release has-earlier-version"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;gr.279331.124v1" /><label for="gca-form-cb-d77227e1692">Select this article</label></div> <div class="cit-metadata"><span class="cit-first-element cit-title">Multiple paralogues and recombination mechanisms contribute to the high incidence of 22q11.2 Deletion Syndrome </span><ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Lisanne Vervoort</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Nicolas Dierckxsens</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Marta Sousa Santos</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Senne Meynants</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Erika Souche</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Ruben Cools</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Tracy Heung</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Koen Devriendt</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Hilde Peeters</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Donna McDonald-McGinn</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Ann Swillen</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Jeroen Breckpot</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Beverly S. Emanuel</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Hilde Van Esch</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Anne S. Bassett</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Joris R. Vermeesch</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">November 13, 2024</span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>November 13, 2024<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.279331.124 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/early/2024/11/13/gr.279331.124.abstract" rel="abstract">Abstract</a></li> <li class="last-item"><a href="/content/early/2024/11/13/gr.279331.124.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> </ul> <span class="cit-flags"><span class="accepted-manuscript">ACCEPTED MANUSCRIPT</span> </span> </div> </div> <div class="cit openaccess creative-commons creative-commons-by-nc/4.0/ is-early-release has-earlier-version"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;gr.279278.124v1" /><label for="gca-form-cb-d77227e2083">Select this article</label></div> <div class="cit-metadata"><span class="cit-first-element cit-title">Multisample motif discovery and visualization for tandem repeats </span><ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Yaran Zhang</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Marc Hulsman</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Alex Salazar</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Niccol&oacute Tesi</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Lydian Knoop</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Sven van der Lee</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Sanduni Wijesekera</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Jana Krizova</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Erik-Jan Kamsteeg</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Henne Holstege</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">November 13, 2024</span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>November 13, 2024<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.279278.124 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/early/2024/11/13/gr.279278.124.abstract" rel="abstract">Abstract</a></li> <li class="last-item"><a href="/content/early/2024/11/13/gr.279278.124.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> </ul> <span class="cit-flags"><span class="open-access-note">OPEN ACCESS ARTICLE</span><span class="accepted-manuscript">ACCEPTED MANUSCRIPT</span> </span> </div> </div> </ul> </div> <div class="gca-buttons"> <input type="reset" name="reset" value="Clear" /> <input type="submit" name="submit" value="Get All Checked Abstracts" /> </div> <div class="toc-level level1"> <h2 id="citgp-2024-10-29"><a class="toc-section-return" href="#content-block"></a><span>October 29, 2024</span></h2> <ul class="cit-list"> <div class="cit creative-commons creative-commons-by-nc/4.0/ is-early-release has-earlier-version"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;gr.279270.124v1" /><label for="gca-form-cb-d77227e1255">Select this article</label></div> <div class="cit-metadata"><span class="cit-first-element cit-title">Long-read RNA sequencing reveals allele-specific N6-methyladenosine modifications </span><ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Dayea Park</span><span class="cit-sep cit-sep-two-item-separator"> and</span></li> <li class="last-item"><span class="cit-auth cit-auth-type-author">Can Cenik</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">October 29, 2024</span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>October 29, 2024<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.279270.124 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/early/2024/10/28/gr.279270.124.abstract" rel="abstract">Abstract</a></li> <li class="last-item"><a href="/content/early/2024/10/28/gr.279270.124.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> </ul> <span class="cit-flags"><span class="accepted-manuscript">ACCEPTED MANUSCRIPT</span> </span> </div> </div> <div class="cit creative-commons creative-commons-by-nc/4.0/ is-early-release has-earlier-version"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;gr.279307.124v1" /><label for="gca-form-cb-d77227e1447">Select this article</label></div> <div class="cit-metadata"><span class="cit-first-element cit-title">Geometric deep learning framework for de novo genome assembly </span><ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Lovro Vr膷ek</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Xavier Bresson</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Thomas Laurent</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Martin Schmitz</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Kenji Kawaguchi</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Mile 艩iki膰</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">October 29, 2024</span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>October 29, 2024<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.279307.124 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/early/2024/10/28/gr.279307.124.abstract" rel="abstract">Abstract</a></li> <li class="last-item"><a href="/content/early/2024/10/28/gr.279307.124.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> </ul> <span class="cit-flags"><span class="accepted-manuscript">ACCEPTED MANUSCRIPT</span> </span> </div> </div> </ul> </div> <div class="gca-buttons"> <input type="reset" name="reset" value="Clear" /> <input type="submit" name="submit" value="Get All Checked Abstracts" /> </div> <div class="toc-level level1"> <h2 id="citgp-2024-10-22"><a class="toc-section-return" href="#content-block"></a><span>October 22, 2024</span></h2> <ul class="cit-list"> <div class="cit creative-commons creative-commons-by-nc/4.0/ is-early-release has-earlier-version"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;gr.279301.124v1" /><label for="gca-form-cb-d77227e988">Select this article</label></div> <div class="cit-metadata"><span class="cit-first-element cit-title"><em>Candida albicans</em> isolates contain frequent heterozygous structural variants and transposable elements within genes and centromeres </span><ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Ursula Oggenfuss</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Robert T Todd</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Natthapon Soisangwan</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Bailey Kemp</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Alison Guyer</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Annette Beach</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Anna Selmecki</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">October 22, 2024</span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>October 22, 2024<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.279301.124 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/early/2024/10/22/gr.279301.124.abstract" rel="abstract">Abstract</a></li> <li class="last-item"><a href="/content/early/2024/10/22/gr.279301.124.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> </ul> <span class="cit-flags"><span class="accepted-manuscript">ACCEPTED MANUSCRIPT</span> </span> </div> </div> </ul> </div> <div class="gca-buttons"> <input type="reset" name="reset" value="Clear" /> <input type="submit" name="submit" value="Get All Checked Abstracts" /> </div> <div class="toc-level level1"> <h2 id="citgp-2024-10-21"><a class="toc-section-return" href="#content-block"></a><span>October 21, 2024</span></h2> <ul class="cit-list"> <div class="cit openaccess creative-commons creative-commons-by-nc/4.0/ is-early-release has-earlier-version"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;gr.278775.123v1" /><label for="gca-form-cb-d77227e406">Select this article</label></div> <div class="cit-metadata"><span class="cit-first-element cit-title">Ultrasensitive allele inference from immune repertoire sequencing data with MiXCR </span><ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Artem Mikelov</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">George Nefedev</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Aleksandr Tashkeev</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Oscar L Rodriguez</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Diego A Ortmans</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Valeriia Skatova</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Mark Izraelson</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Alexey N Davydov</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Stanislav Poslavsky</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Souad Rahmouni</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Corey T Watson</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Dmitriy M Chudakov</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Scott D Boyd</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Dmitry A Bolotin</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">October 21, 2024</span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>October 21, 2024<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.278775.123 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/early/2024/10/21/gr.278775.123.abstract" rel="abstract">Abstract</a></li> <li class="last-item"><a href="/content/early/2024/10/21/gr.278775.123.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> </ul> <span class="cit-flags"><span class="open-access-note">OPEN ACCESS ARTICLE</span><span class="accepted-manuscript">ACCEPTED MANUSCRIPT</span> </span> </div> </div> <div class="cit creative-commons creative-commons-by-nc/4.0/ is-early-release has-earlier-version"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;gr.279399.124v1" /><label for="gca-form-cb-d77227e770">Select this article</label></div> <div class="cit-metadata"><span class="cit-first-element cit-title">Inferring ancestry with the hierarchical soft clustering approach tangleGen </span><ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Klara Elisabeth Burger</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Solveig Klepper</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Ulrike von Luxburg</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Franz Baumdicker</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">October 21, 2024</span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>October 21, 2024<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.279399.124 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/early/2024/10/21/gr.279399.124.abstract" rel="abstract">Abstract</a></li> <li class="last-item"><a href="/content/early/2024/10/21/gr.279399.124.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> </ul> <span class="cit-flags"><span class="accepted-manuscript">ACCEPTED MANUSCRIPT</span> </span> </div> </div> </ul> </div> <div class="gca-buttons"> <input type="reset" name="reset" value="Clear" /> <input type="submit" name="submit" value="Get All Checked Abstracts" /> </div> </form> <div id="content-end-sb" class="sb-div"></div> </div> <div id="col-2"> <div class="sidebar pap-subscribe"> <h4><span>Subscribe to Advance Online Articles </span></h4> <ul> <li><a href="/cgi/alerts/etoc" title="eTOC signup">Email (eTOCs)</a></li> <li><a class="rss-link" href="/rss">RSS syndication</a></li> </ul> </div> <div class="content-box" id="art-history-pane"> <div class="cb-contents"> <div class="cb-section 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