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id="pap-header"> <h1>Advance Online Articles</h1> <p class="pap-last-modified">Last updated <span class="pap-last-modified-date">February 20, 2025</span></p> <div class="pap-about-text"> <p><em>GENOME RESEARCH</em> POSTS ADVANCE ARTICLES, INCLUDING ACCEPTED MANUSCRIPTS, FOR RAPID ACCESS TO THE LATEST RESEARCH. </p> <p>Advance Articles are published online ahead of print. The online first release date serves as the official date of publication. Upon release of the article's scheduled issue, the advance article (which may not be the final version) will move from this <span class="pap-index-page-name">Advance Online Articles</span> index to the issue's full Table of Contents in its final edited form. </p> <p>Advance Articles also include <span class="accepted-preprints-name"><a href="/site/misc/acc_preprints.xhtml">Accepted Manuscripts</a></span>, which are PDF versions of manuscripts that have been peer reviewed and accepted for publication but are not yet copyedited or typeset. They are posted as submitted by the authors, subject to the authors' agreement, and do not reflect the changes that will be made before final publication. The <span class="accepted-preprints-name">Accepted Manuscript</span> remains on the <span class="pap-index-page-name">Advance Online Articles</span> page until it is either replaced by a copyedited and typeset version and/or when the final version of the article is published in an issue. </p> </div> </div> <form method="get" action="/gca"> <div class="gca-buttons"> <input type="reset" name="reset" value="Clear" /> <input type="submit" name="submit" value="Get All Checked Abstracts" /> </div> <div class="toc-level level1"> <h2 id="citgp-2025-02-20"><a class="toc-section-return" href="#content-block"></a><span>February 20, 2025</span></h2> <ul class="cit-list"> <div class="cit creative-commons creative-commons-by-nc/4.0/ is-early-release has-earlier-version"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;gr.279503.124v1" /><label for="gca-form-cb-d32192e6688">Select this article</label></div> <div class="cit-metadata"><span class="cit-first-element cit-title">The genomic consequences and persistence of sociality in spiders </span><ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Jilong Ma</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Jesper Bechsgaard</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Anne Aagaard</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Palle Villesen</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Trine Bilde</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Mikkel Schierup</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">February 20, 2025</span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>February 20, 2025<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.279503.124 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/early/2025/02/19/gr.279503.124.abstract" rel="abstract">Abstract</a></li> <li class="last-item"><a href="/content/early/2025/02/19/gr.279503.124.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> </ul> <span class="cit-flags"><span class="accepted-manuscript">ACCEPTED MANUSCRIPT</span> </span> </div> </div> </ul> </div> <div class="gca-buttons"> <input type="reset" name="reset" value="Clear" /> <input type="submit" name="submit" value="Get All Checked Abstracts" /> </div> <div class="toc-level level1"> <h2 id="citgp-2025-02-19"><a class="toc-section-return" href="#content-block"></a><span>February 19, 2025</span></h2> <ul class="cit-list"> <div class="cit openaccess creative-commons creative-commons-by-nc/4.0/ is-early-release has-earlier-version"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;gr.279278.124v2" /><label for="gca-form-cb-d32192e6309">Select this article</label></div> <div class="cit-metadata"><span class="cit-first-element cit-title">Multisample motif discovery and visualization for tandem repeats </span><ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Yaran Zhang</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Marc Hulsman</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Alex Salazar</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Niccol貌 Tesi</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Lydian Knoop</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Sven van der Lee</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Sanduni Wijesekera</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Jana Krizova</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Erik-Jan Kamsteeg</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Henne Holstege</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">November 13, 2024</span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>November 13, 2024<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.279278.124 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/early/2025/02/17/gr.279278.124.abstract" rel="abstract">Abstract</a></li> <li><a href="/content/early/2025/02/17/gr.279278.124.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> <li class="last-item"><a href="/content/early/2025/02/17/gr.279278.124/suppl/DC1" rel="supplemental-data" class="dslink-supplemental-material">Supplemental Material</a></li> </ul> <span class="cit-flags"><span class="open-access-note">OPEN ACCESS ARTICLE</span> </span> </div> </div> </ul> </div> <div class="gca-buttons"> <input type="reset" name="reset" value="Clear" /> <input type="submit" name="submit" value="Get All Checked Abstracts" /> </div> <div class="toc-level level1"> <h2 id="citgp-2025-02-18"><a class="toc-section-return" href="#content-block"></a><span>February 18, 2025</span></h2> <ul class="cit-list"> <div class="cit openaccess creative-commons creative-commons-by-nc/4.0/ is-early-release has-earlier-version"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;gr.280008.124v1" /><label for="gca-form-cb-d32192e5633">Select this article</label></div> <div class="cit-metadata"><span class="cit-first-element cit-title">Transcriptomic and proteomic effects of gene deletion are not evolutionarily conserved </span><ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Yang Li</span><span class="cit-sep cit-sep-two-item-separator"> and</span></li> <li class="last-item"><span class="cit-auth cit-auth-type-author">Jianzhi George Zhang</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">February 18, 2025</span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>February 18, 2025<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.280008.124 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/early/2025/02/18/gr.280008.124.abstract" rel="abstract">Abstract</a></li> <li class="last-item"><a href="/content/early/2025/02/18/gr.280008.124.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> </ul> <span class="cit-flags"><span class="open-access-note">OPEN ACCESS ARTICLE</span><span class="accepted-manuscript">ACCEPTED MANUSCRIPT</span> </span> </div> </div> <div class="cit openaccess creative-commons creative-commons-by-nc/4.0/ is-early-release has-earlier-version"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;gr.279631.124v1" /><label for="gca-form-cb-d32192e5824">Select this article</label></div> <div class="cit-metadata"><span class="cit-first-element cit-title">A unified analysis of atlas single cell data </span><ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Hao Chen</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Nam D Nguyen</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Matt Ruffalo</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Ziv Y Bar-Joseph</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">February 18, 2025</span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>February 18, 2025<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.279631.124 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/early/2025/02/18/gr.279631.124.abstract" rel="abstract">Abstract</a></li> <li class="last-item"><a href="/content/early/2025/02/18/gr.279631.124.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> </ul> <span class="cit-flags"><span class="open-access-note">OPEN ACCESS ARTICLE</span><span class="accepted-manuscript">ACCEPTED MANUSCRIPT</span> </span> </div> </div> <div class="cit creative-commons creative-commons-by-nc/4.0/ is-early-release has-earlier-version"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;gr.279049.124v1" /><label for="gca-form-cb-d32192e6043">Select this article</label></div> <div class="cit-metadata"><span class="cit-first-element cit-title">Long-read single-cell RNA sequencing enables the study of cancer subclone-specific genotypes and phenotypes in chronic lymphocytic leukemia </span><ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Gage S. Black</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Xiaomeng Huang</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Yi Qiao</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Philip Moos</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Deepa Sampath</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Deborah M. Stephens</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Jennifer A. Woyach</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Gabor T. Marth</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">February 18, 2025</span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>February 18, 2025<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.279049.124 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/early/2025/02/18/gr.279049.124.abstract" rel="abstract">Abstract</a></li> <li class="last-item"><a href="/content/early/2025/02/18/gr.279049.124.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> </ul> <span class="cit-flags"><span class="accepted-manuscript">ACCEPTED MANUSCRIPT</span> </span> </div> </div> </ul> </div> <div class="gca-buttons"> <input type="reset" name="reset" value="Clear" /> <input type="submit" name="submit" value="Get All Checked Abstracts" /> </div> <div class="toc-level level1"> <h2 id="citgp-2025-02-14"><a class="toc-section-return" href="#content-block"></a><span>February 14, 2025</span></h2> <ul class="cit-list"> <div class="cit openaccess creative-commons creative-commons-by-nc/4.0/ is-early-release has-earlier-version"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;gr.279093.124v1" /><label for="gca-form-cb-d32192e4975">Select this article</label></div> <div class="cit-metadata"><span class="cit-first-element cit-title">Ancient dog introgression into the Iberian wolf genome may have facilitated adaptation to human-dominated landscapes </span><ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Diana Lobo</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Hernan E Morales</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Cock Van Oosterhout</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Jose Vicente Lopez-Bao</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Pedro Silva</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Luis Llaneza</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Carolina Pacheco</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Diana Castro</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">German Hernandez-Alonso</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">George Antunes Pacheco</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">John Patrick Archer</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">M. Thomas P. Gilbert</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Nuno Ferrand</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Raquel Godinho</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">February 14, 2025</span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>February 14, 2025<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.279093.124 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/early/2025/02/14/gr.279093.124.abstract" rel="abstract">Abstract</a></li> <li class="last-item"><a href="/content/early/2025/02/14/gr.279093.124.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> </ul> <span class="cit-flags"><span class="open-access-note">OPEN ACCESS ARTICLE</span><span class="accepted-manuscript">ACCEPTED MANUSCRIPT</span> </span> </div> </div> <div class="cit openaccess creative-commons creative-commons-by/4.0/ is-early-release has-earlier-version"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;gr.279498.124v1" /><label for="gca-form-cb-d32192e5328">Select this article</label></div> <div class="cit-metadata"><span class="cit-first-element cit-title">Evolutionarily new genes in humans with disease phenotypes reveal functional enrichment patterns shaped by adaptive innovation and sexual selection </span><ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Jian-Hai Chen</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Patrick Landback</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Deanna Arsala</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Alexander Guzzetta</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Shengqian Xia</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Jared Atlas</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Dylan Sosa</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Yong Zhang</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Jingqiu Cheng</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Bairong Shen</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Manyuan Long</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">February 14, 2025</span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>February 14, 2025<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.279498.124 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/early/2025/02/14/gr.279498.124.abstract" rel="abstract">Abstract</a></li> <li class="last-item"><a href="/content/early/2025/02/14/gr.279498.124.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> </ul> <span class="cit-flags"><span class="open-access-note">OPEN ACCESS ARTICLE</span><span class="accepted-manuscript">ACCEPTED MANUSCRIPT</span> </span> </div> </div> <div class="cit creative-commons creative-commons-by-nc/4.0/ is-early-release has-earlier-version"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;gr.279203.124v1" /><label for="gca-form-cb-d32192e4706">Select this article</label></div> <div class="cit-metadata"><span class="cit-first-element cit-title">Genetic regulation of nascent RNA maturation revealed by direct RNA nanopore sequencing </span><ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Karine Choquet</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Louis-Philippe Chaumont</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Simon Bache</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Autum R. Baxter-Koenigs</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">L. Stirling Churchman</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">February 14, 2025</span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>February 14, 2025<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.279203.124 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/early/2025/02/13/gr.279203.124.abstract" rel="abstract">Abstract</a></li> <li><a href="/content/early/2025/02/13/gr.279203.124.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> <li class="last-item"><a href="/content/early/2025/02/13/gr.279203.124/suppl/DC1" rel="supplemental-data" class="dslink-supplemental-material">Supplemental Material</a></li> </ul> </div> </div> </ul> </div> <div class="gca-buttons"> <input type="reset" name="reset" value="Clear" /> <input type="submit" name="submit" value="Get All Checked Abstracts" /> </div> <div class="toc-level level1"> <h2 id="citgp-2025-02-12"><a class="toc-section-return" href="#content-block"></a><span>February 12, 2025</span></h2> <ul class="cit-list"> <div class="cit creative-commons creative-commons-by-nc/4.0/ is-early-release has-earlier-version"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;gr.279763.124v1" /><label for="gca-form-cb-d32192e4189">Select this article</label></div> <div class="cit-metadata"><span class="cit-first-element cit-title">Fast sequence alignment for centromere with RaMA </span><ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Pinglu Zhang</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Yanming Wei</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Qinzhong Tian</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Quan Zou</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Yansu Wang</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">February 12, 2025</span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>February 12, 2025<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.279763.124 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/early/2025/02/12/gr.279763.124.abstract" rel="abstract">Abstract</a></li> <li class="last-item"><a href="/content/early/2025/02/12/gr.279763.124.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> </ul> <span class="cit-flags"><span class="accepted-manuscript">ACCEPTED MANUSCRIPT</span> </span> </div> </div> <div class="cit creative-commons creative-commons-by-nc/4.0/ is-early-release has-earlier-version"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;gr.278931.124v1" /><label for="gca-form-cb-d32192e4431">Select this article</label></div> <div class="cit-metadata"><span class="cit-first-element cit-title">The role of transposon activity in shaping <em>cis</em>-regulatory element evolution after whole genome duplication </span><ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Oystein Monsen</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Lars Gronvold</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Alex Datsomor</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Thomas Nelson Harvey</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">James Kijas</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Alexander Sang-Jae Suh</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Torgeir Rhoden Hvidsten</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Simen Rod Sandve</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">February 12, 2025</span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>February 12, 2025<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.278931.124 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/early/2025/02/12/gr.278931.124.abstract" rel="abstract">Abstract</a></li> <li class="last-item"><a href="/content/early/2025/02/12/gr.278931.124.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> </ul> <span class="cit-flags"><span class="accepted-manuscript">ACCEPTED MANUSCRIPT</span> </span> </div> </div> </ul> </div> <div class="gca-buttons"> <input type="reset" name="reset" value="Clear" /> <input type="submit" name="submit" value="Get All Checked Abstracts" /> </div> <div class="toc-level level1"> <h2 id="citgp-2025-02-10"><a class="toc-section-return" href="#content-block"></a><span>February 10, 2025</span></h2> <ul class="cit-list"> <div class="cit creative-commons creative-commons-by-nc/4.0/ is-early-release has-earlier-version"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;gr.279541.124v1" /><label for="gca-form-cb-d32192e3776">Select this article</label></div> <div class="cit-metadata"><span class="cit-first-element cit-title">Nucleosome-binding by TP53, TP63, and TP73 is determined by the composition, accessibility, and helical orientation of their binding sites </span><ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Patrick Wilson</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Xinyang Yu</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Christopher R Handelmann</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Michael J Buck</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">February 10, 2025</span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>February 10, 2025<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.279541.124 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/early/2025/02/10/gr.279541.124.abstract" rel="abstract">Abstract</a></li> <li class="last-item"><a href="/content/early/2025/02/10/gr.279541.124.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> </ul> <span class="cit-flags"><span class="accepted-manuscript">ACCEPTED MANUSCRIPT</span> </span> </div> </div> <div class="cit creative-commons creative-commons-by-nc/4.0/ is-early-release has-earlier-version"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;gr.279837.124v1" /><label for="gca-form-cb-d32192e3985">Select this article</label></div> <div class="cit-metadata"><span class="cit-first-element cit-title">Variation in the fitness impact of translationally optimal codons among animals </span><ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Florian B茅niti猫re</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Tristan Lef茅bure</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Laurent Duret</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">February 10, 2025</span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>February 10, 2025<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.279837.124 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/early/2025/02/10/gr.279837.124.abstract" rel="abstract">Abstract</a></li> <li class="last-item"><a href="/content/early/2025/02/10/gr.279837.124.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> </ul> <span class="cit-flags"><span class="accepted-manuscript">ACCEPTED MANUSCRIPT</span> </span> </div> </div> </ul> </div> <div class="gca-buttons"> <input type="reset" name="reset" value="Clear" /> <input type="submit" name="submit" value="Get All Checked Abstracts" /> </div> <div class="toc-level level1"> <h2 id="citgp-2025-02-03"><a class="toc-section-return" href="#content-block"></a><span>February 3, 2025</span></h2> <ul class="cit-list"> <div class="cit openaccess creative-commons creative-commons-by-nc/4.0/ is-early-release has-earlier-version"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;gr.279970.124v1" /><label for="gca-form-cb-d32192e3549">Select this article</label></div> <div class="cit-metadata"><span class="cit-first-element cit-title">The additional diagnostic yield of long-read sequencing in undiagnosed rare diseases </span><ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Giulia F. Del Gobbo</span><span class="cit-sep cit-sep-two-item-separator"> and</span></li> <li class="last-item"><span class="cit-auth cit-auth-type-author">Kym M. Boycott</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">February 3, 2025</span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>February 3, 2025<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.279970.124 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/early/2025/02/03/gr.279970.124.abstract" rel="abstract">Abstract</a></li> <li class="last-item"><a href="/content/early/2025/02/03/gr.279970.124.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> </ul> <span class="cit-flags"><span class="open-access-note">OPEN ACCESS ARTICLE</span> </span> </div> </div> </ul> </div> <div class="gca-buttons"> <input type="reset" name="reset" value="Clear" /> <input type="submit" name="submit" value="Get All Checked Abstracts" /> </div> <div class="toc-level level1"> <h2 id="citgp-2025-01-30"><a class="toc-section-return" href="#content-block"></a><span>January 30, 2025</span></h2> <ul class="cit-list"> <div class="cit openaccess creative-commons creative-commons-by-nc/4.0/ is-early-release has-earlier-version"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;gr.279329.124v1" /><label for="gca-form-cb-d32192e3304">Select this article</label></div> <div class="cit-metadata"><span class="cit-first-element cit-title">Enhancing nanopore adaptive sampling for PromethION using readfish at scale </span><ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Rory Munro</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Alex Payne</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Nadine Holmes</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Chris Moore</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Inswasti Cahyani</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Matt Loose</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">January 30, 2025</span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>January 30, 2025<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.279329.124 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/early/2025/01/30/gr.279329.124.abstract" rel="abstract">Abstract</a></li> <li class="last-item"><a href="/content/early/2025/01/30/gr.279329.124.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> </ul> <span class="cit-flags"><span class="open-access-note">OPEN ACCESS ARTICLE</span><span class="accepted-manuscript">ACCEPTED MANUSCRIPT</span> </span> </div> </div> </ul> </div> <div class="gca-buttons"> <input type="reset" name="reset" value="Clear" /> <input type="submit" name="submit" value="Get All Checked Abstracts" /> </div> <div class="toc-level level1"> <h2 id="citgp-2025-01-29"><a class="toc-section-return" href="#content-block"></a><span>January 29, 2025</span></h2> <ul class="cit-list"> <div class="cit openaccess creative-commons creative-commons-by-nc/4.0/ is-early-release has-earlier-version"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;gr.279290.124v1" /><label for="gca-form-cb-d32192e3015">Select this article</label></div> <div class="cit-metadata"><span class="cit-first-element cit-title">Rapid and accurate demultiplexing of direct RNA nanopore sequencing datasets with SeqTagger </span><ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Leszek P Pryszcz</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Gregor Diensthuber</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Laia Llovera</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Rebeca Medina</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Anna Delgado-Tejedor</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Luca Cozzuto</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Julia Ponomarenko</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Eva Maria Novoa</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">January 29, 2025</span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>January 29, 2025<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.279290.124 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/early/2025/01/29/gr.279290.124.abstract" rel="abstract">Abstract</a></li> <li class="last-item"><a href="/content/early/2025/01/29/gr.279290.124.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> </ul> <span class="cit-flags"><span class="open-access-note">OPEN ACCESS ARTICLE</span><span class="accepted-manuscript">ACCEPTED MANUSCRIPT</span> </span> </div> </div> </ul> </div> <div class="gca-buttons"> <input type="reset" name="reset" value="Clear" /> <input type="submit" name="submit" value="Get All Checked Abstracts" /> </div> <div class="toc-level level1"> <h2 id="citgp-2025-01-13"><a class="toc-section-return" href="#content-block"></a><span>January 13, 2025</span></h2> <ul class="cit-list"> <div class="cit openaccess creative-commons creative-commons-by/4.0/ is-early-release has-earlier-version"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;gr.279144.124v1" /><label for="gca-form-cb-d32192e2566">Select this article</label></div> <div class="cit-metadata"><span class="cit-first-element cit-title">Nanopore-based consensus sequencing enables accurate multimodal tumor cell-free DNA profiling </span><ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Li-Ting Chen</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Myrthe Jager</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">D脿mi Rebergen</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Geertruid J. Brink</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Tom van den Ende</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Willem Vanderlinden</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Pauline Kolbeck</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Marc Pag猫s-Gallego</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Ymke van der Pol</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Nicolle Besselink</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Norbert Moldovan</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Nizar Hami</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Wigard P. Kloosterman</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Hanneke van Laarhoven</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Florent Mouliere</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Ronald Zweemer</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Jan Lipfert</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Sarah Derks</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Alessio Marcozzi</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Jeroen de Ridder</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">January 13, 2025</span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>January 13, 2025<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.279144.124 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/early/2025/01/13/gr.279144.124.abstract" rel="abstract">Abstract</a></li> <li class="last-item"><a href="/content/early/2025/01/13/gr.279144.124.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> </ul> <span class="cit-flags"><span class="open-access-note">OPEN ACCESS ARTICLE</span><span class="accepted-manuscript">ACCEPTED MANUSCRIPT</span> </span> </div> </div> </ul> </div> <div class="gca-buttons"> <input type="reset" name="reset" value="Clear" /> <input type="submit" name="submit" value="Get All Checked Abstracts" /> </div> <div class="toc-level level1"> <h2 id="citgp-2025-01-10"><a class="toc-section-return" href="#content-block"></a><span>January 10, 2025</span></h2> <ul class="cit-list"> <div class="cit openaccess creative-commons creative-commons-by-nc/4.0/ is-early-release has-earlier-version"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;gr.279322.124v1" /><label for="gca-form-cb-d32192e1971">Select this article</label></div> <div class="cit-metadata"><span class="cit-first-element cit-title">Single-cell Rapid Capture Hybridization sequencing to reliably detect isoform usage and coding mutations in targeted genes </span><ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Hongke Peng</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Jafar S. Jabbari</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Luyi Tian</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Changqing Wang</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Yupei You</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Chong Chyn Chua</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Natasha S. Anstee</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Noorul Amin</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Andrew H. Wei</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Nadia Davidson</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Andrew W. Roberts</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">David Huang</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Matthew E Ritchie</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Rachel Thijssen</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">January 10, 2025</span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>January 10, 2025<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.279322.124 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/early/2025/01/10/gr.279322.124.abstract" rel="abstract">Abstract</a></li> <li class="last-item"><a href="/content/early/2025/01/10/gr.279322.124.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> </ul> <span class="cit-flags"><span class="open-access-note">OPEN ACCESS ARTICLE</span><span class="accepted-manuscript">ACCEPTED MANUSCRIPT</span> </span> </div> </div> </ul> </div> <div class="gca-buttons"> <input type="reset" name="reset" value="Clear" /> <input type="submit" name="submit" value="Get All Checked Abstracts" /> </div> <div class="toc-level level1"> <h2 id="citgp-2024-12-23"><a class="toc-section-return" href="#content-block"></a><span>December 23, 2024</span></h2> <ul class="cit-list"> <div class="cit openaccess creative-commons creative-commons-by/4.0/ is-early-release has-earlier-version"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;gr.279864.124v1" /><label for="gca-form-cb-d32192e1685">Select this article</label></div> <div class="cit-metadata"><span class="cit-first-element cit-title">Evaluation of strategies for evidence-driven genome annotation using long-read RNA-seq </span><ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Alejandro Paniagua</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Cristina Agustin-Garc铆a</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Francisco J Pardo-Palacios</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Thomas Brown</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Maite De Maria</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Nancy D Denslow</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Camila Mazzoni</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Ana Conesa</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">December 23, 2024</span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>December 23, 2024<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.279864.124 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/early/2024/12/20/gr.279864.124.abstract" rel="abstract">Abstract</a></li> <li class="last-item"><a href="/content/early/2024/12/20/gr.279864.124.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> </ul> <span class="cit-flags"><span class="open-access-note">OPEN ACCESS ARTICLE</span><span class="accepted-manuscript">ACCEPTED MANUSCRIPT</span> </span> </div> </div> </ul> </div> <div class="gca-buttons"> <input type="reset" name="reset" value="Clear" /> <input type="submit" name="submit" value="Get All Checked Abstracts" /> </div> <div class="toc-level level1"> <h2 id="citgp-2024-12-18"><a class="toc-section-return" href="#content-block"></a><span>December 18, 2024</span></h2> <ul class="cit-list"> <div class="cit creative-commons creative-commons-by-nc/4.0/ is-early-release has-earlier-version"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;gr.279064.124v1" /><label for="gca-form-cb-d32192e2317">Select this article</label></div> <div class="cit-metadata"><span class="cit-first-element cit-title">Taurine pangenome uncovers a segmental duplication upstream of <em>KIT</em> associated with depigmentation in white-headed cattle </span><ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Sotiria Milia</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Alexander Leonard</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Xena Marie Mapel</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Sandra Milena Bernal Ulloa</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Cord Dr枚gem眉ller</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Hubert Pausch</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">December 18, 2024</span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>December 18, 2024<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.279064.124 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/early/2024/12/17/gr.279064.124.abstract" rel="abstract">Abstract</a></li> <li class="last-item"><a href="/content/early/2024/12/17/gr.279064.124.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> </ul> <span class="cit-flags"><span class="accepted-manuscript">ACCEPTED MANUSCRIPT</span> </span> </div> </div> </ul> </div> <div class="gca-buttons"> <input type="reset" name="reset" value="Clear" /> <input type="submit" name="submit" value="Get All Checked Abstracts" /> </div> <div class="toc-level level1"> <h2 id="citgp-2024-12-05"><a class="toc-section-return" href="#content-block"></a><span>December 5, 2024</span></h2> <ul class="cit-list"> <div class="cit openaccess creative-commons creative-commons-by/4.0/ is-early-release has-earlier-version"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;gr.279041.124v1" /><label for="gca-form-cb-d32192e1151">Select this article</label></div> <div class="cit-metadata"><span class="cit-first-element cit-title">Rearrangements of viral and human genomes at human papillomavirus integration events and their allele-specific impacts on cancer genome regulation </span><ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Vanessa L. 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Corbett</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Luka Culibrk</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Zeid Hamadeh</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Marissa Iden</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Rachel Schmidt</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Shirng-Wern Tsaih</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Carolyn Nakisige</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Martin Origa</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Jackson Orem</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Glenn Chang</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Jeremy Fan</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Ka Ming Nip</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Vahid Akbari</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Simon K. Chan</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">James Hopkins</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Richard A. Moore</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Eric Chuah</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Karen L. Mungall</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Andrew J. Mungall</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Inanc Birol</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Steven J.M. Jones</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Janet S. Rader</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Marco A. Marra</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">December 5, 2024</span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>December 5, 2024<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.279041.124 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/early/2024/12/05/gr.279041.124.abstract" rel="abstract">Abstract</a></li> <li class="last-item"><a href="/content/early/2024/12/05/gr.279041.124.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> </ul> <span class="cit-flags"><span class="open-access-note">OPEN ACCESS ARTICLE</span><span class="accepted-manuscript">ACCEPTED MANUSCRIPT</span> </span> </div> </div> </ul> </div> <div class="gca-buttons"> <input type="reset" name="reset" value="Clear" /> <input type="submit" name="submit" value="Get All Checked Abstracts" /> </div> <div class="toc-level level1"> <h2 id="citgp-2024-11-13"><a class="toc-section-return" href="#content-block"></a><span>November 13, 2024</span></h2> <ul class="cit-list"> <div class="cit creative-commons creative-commons-by-nc/4.0/ is-early-release has-earlier-version"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;gr.279331.124v1" /><label for="gca-form-cb-d32192e760">Select this article</label></div> <div class="cit-metadata"><span class="cit-first-element cit-title">Multiple paralogues and recombination mechanisms contribute to the high incidence of 22q11.2 Deletion Syndrome </span><ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Lisanne Vervoort</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Nicolas Dierckxsens</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Marta Sousa Santos</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Senne Meynants</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Erika Souche</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Ruben Cools</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Tracy Heung</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Koen Devriendt</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Hilde Peeters</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Donna McDonald-McGinn</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Ann Swillen</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Jeroen Breckpot</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Beverly S. Emanuel</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Hilde Van Esch</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Anne S. Bassett</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Joris R. Vermeesch</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">November 13, 2024</span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>November 13, 2024<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.279331.124 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/early/2024/11/13/gr.279331.124.abstract" rel="abstract">Abstract</a></li> <li class="last-item"><a href="/content/early/2024/11/13/gr.279331.124.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> </ul> <span class="cit-flags"><span class="accepted-manuscript">ACCEPTED MANUSCRIPT</span> </span> </div> </div> </ul> </div> <div class="gca-buttons"> <input type="reset" name="reset" value="Clear" /> <input type="submit" name="submit" value="Get All Checked Abstracts" /> </div> <div class="toc-level level1"> <h2 id="citgp-2024-10-29"><a class="toc-section-return" href="#content-block"></a><span>October 29, 2024</span></h2> <ul class="cit-list"> <div class="cit creative-commons creative-commons-by-nc/4.0/ is-early-release has-earlier-version"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;gr.279270.124v1" /><label for="gca-form-cb-d32192e323">Select this article</label></div> <div class="cit-metadata"><span class="cit-first-element cit-title">Long-read RNA sequencing reveals allele-specific N6-methyladenosine modifications </span><ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Dayea Park</span><span class="cit-sep cit-sep-two-item-separator"> and</span></li> <li class="last-item"><span class="cit-auth cit-auth-type-author">Can Cenik</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">October 29, 2024</span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>October 29, 2024<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.279270.124 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/early/2024/10/28/gr.279270.124.abstract" rel="abstract">Abstract</a></li> <li class="last-item"><a href="/content/early/2024/10/28/gr.279270.124.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> </ul> <span class="cit-flags"><span class="accepted-manuscript">ACCEPTED MANUSCRIPT</span> </span> </div> </div> <div class="cit creative-commons creative-commons-by-nc/4.0/ is-early-release has-earlier-version"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;gr.279307.124v1" /><label for="gca-form-cb-d32192e515">Select this article</label></div> <div class="cit-metadata"><span class="cit-first-element cit-title">Geometric deep learning framework for de novo genome assembly </span><ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Lovro Vr膷ek</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Xavier Bresson</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Thomas Laurent</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Martin Schmitz</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Kenji Kawaguchi</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Mile 艩iki膰</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">October 29, 2024</span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>October 29, 2024<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.279307.124 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/early/2024/10/28/gr.279307.124.abstract" rel="abstract">Abstract</a></li> <li class="last-item"><a href="/content/early/2024/10/28/gr.279307.124.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> </ul> <span class="cit-flags"><span class="accepted-manuscript">ACCEPTED MANUSCRIPT</span> </span> </div> </div> </ul> </div> <div class="gca-buttons"> <input type="reset" name="reset" value="Clear" /> <input type="submit" name="submit" value="Get All Checked Abstracts" /> </div> <div class="toc-level level1"> <h2 id="citgp-2024-10-22"><a class="toc-section-return" href="#content-block"></a><span>October 22, 2024</span></h2> <ul class="cit-list"> <div class="cit creative-commons creative-commons-by-nc/4.0/ is-early-release has-earlier-version"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;gr.279301.124v1" /><label for="gca-form-cb-d32192e56">Select this article</label></div> <div class="cit-metadata"><span class="cit-first-element cit-title"><em>Candida albicans</em> isolates contain frequent heterozygous structural variants and transposable elements within genes and centromeres </span><ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Ursula Oggenfuss</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Robert T Todd</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Natthapon Soisangwan</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Bailey Kemp</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Alison Guyer</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Annette Beach</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Anna Selmecki</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">October 22, 2024</span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>October 22, 2024<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.279301.124 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/early/2024/10/22/gr.279301.124.abstract" rel="abstract">Abstract</a></li> <li class="last-item"><a href="/content/early/2024/10/22/gr.279301.124.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> </ul> <span class="cit-flags"><span class="accepted-manuscript">ACCEPTED MANUSCRIPT</span> </span> </div> </div> </ul> </div> <div class="gca-buttons"> <input 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