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</label> <input id="search" name="search" type="search" required="required" class="field search__input"> <button type="submit" class="btn search__submit"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--search icon--150"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#search"></use></svg></button></div> <div class="text-sm"> e.g. <a href="/search/blast">BLAST</a>, <a href="/search/uniprot">UniProt</a>, <a href="/search/msh6">MSH6</a>, <a href="/search/albumin">Albumin</a>... </div> </form></div> <div class="container"><div class="resource-page"><div class="flex-grid flex-grid--md flex-grid--even"><div class="lg:w-2/3 xl:w-3/4 flex-grid__item w-full"><section class="flex flex-col pt-5 max-md:pb-5 border-neutral-200 border-t"><div class="flex-auto"><div class="mb-3 md:flex md:items-center"><div class="md:flex-1"><h1 class="mb-5"> EpitopeXtractor </h1></div> <ul aria-label="Resource categories and types" class="resource-page__filters"><li class="resource-page__filter"><svg aria-hidden="true" focusable="false" role="img" class="text-primary-500 icon icon--sys-biology icon--150"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#sys-biology"></use></svg> <div class="flex-1"> Glycomics </div></li> <li class="resource-page__filter"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--150"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <div class="flex-1"> Software tool </div></li></ul></div> <div class="mb-8">Glycan structures submitted to EpitopeXtractor are compared to the complete collection of glycan determinants stored in the Glydin' network. The tool extracts all matching substructures and displays them as Symbol Nomenclature for Glycans (SNFG) cartoons with the option of mapping the results on the Glydin' network. EpitopeXtractor outputs glycan binding motifs for glycan structures.</div> <div class="flex flex-col items-start gap-8 lg:items-center lg:gap-12 lg:flex-row"><div class="flex items-start justify-center lg:justify-start"><a href="https://glycoproteome.expasy.org/epextractor/" target="_blank" rel="noopener noreferer" class="btn btn--primary"> Browse the resource website </a></div> <div class="flex flex-col items-start gap-3">  </div></div></div> <footer class="p-5 resource-page__info bg-neutral-100 border-neutral-200 border-t border-b"><div><p>Developed by the <a href="https://www.sib.swiss/frederique-lisacek-group" rel="noopener noreferrer nofollow">Proteome Informatics group</a>.</p></div> </footer></section></div> <aside class="lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><div class="resource-page__ontologie"><section class="p-5 bg-neutral-100 border-neutral-200 border-t border-b"><h2 class="mb-5 h4"> What you can do with this resource </h2> <ul><li class="inline-block"><a 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class="resource__link"><h3 class="h5"> SwissLipids SPARQL endpoint </h3></a> <div class="text-sm leading-snug mt-1"> SPARQL access to the SwissLipids knowledgebase </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--protein icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#protein"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Proteins & Proteomes </li></ul></li><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--sys-biology icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#sys-biology"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Systems Biology </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--db icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#db"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Database </li></ul></li></ul></div></div> <a href="/resources/string-sparql-endpoint" class="resource__link"><h3 class="h5"> STRING SPARQL endpoint </h3></a> <div class="text-sm leading-snug mt-1"> SPARQL access to the STRING knowledgebase </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--sys-biology icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#sys-biology"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Systems Biology </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/omamo" class="resource__link"><h3 class="h5"> OMAMO </h3></a> <div class="text-sm leading-snug mt-1"> OMAMO allows the user to find the best simple model organism </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--protein icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#protein"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Proteins & Proteomes </li></ul></li><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--sys-biology icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#sys-biology"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Systems Biology </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--db icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#db"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Database </li></ul></li></ul></div></div> <a href="/resources/tcs" class="resource__link"><h3 class="h5"> TCS </h3></a> <div class="text-sm leading-snug mt-1"> Predict interaction specificity in bacterial signalling </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--sys-biology icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#sys-biology"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Glycomics </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--db icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#db"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Database </li></ul></li></ul></div></div> <a href="/resources/unicarb-db" class="resource__link"><h3 class="h5"> UniCarb-DB </h3></a> <div class="text-sm leading-snug mt-1"> Glycan structures and associated mass spectrometry data </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--protein icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#protein"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Proteins & Proteomes </li></ul></li><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--sys-biology icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#sys-biology"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Glycomics </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/swiss-mass-abacus" class="resource__link"><h3 class="h5"> Swiss Mass Abacus </h3></a> <div class="text-sm leading-snug mt-1"> Intuitive calculator of peptide and glycopeptide masses </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--sys-biology icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#sys-biology"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Glycomics </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/sugarsketcher" class="resource__link"><h3 class="h5"> SugarSketcher </h3></a> <div class="text-sm leading-snug mt-1"> Fast, intuitive, SNFG-compliant glycan structure drawing </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--sys-biology icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#sys-biology"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Glycomics </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--db icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#db"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Database </li></ul></li></ul></div></div> <a href="/resources/sugarbind" class="resource__link"><h3 class="h5"> SugarBind </h3></a> <div class="text-sm leading-snug mt-1"> Pathogen Sugar-Binding Database </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--sys-biology icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#sys-biology"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Glycomics </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/glys3" class="resource__link"><h3 class="h5"> GlyS3 </h3></a> <div class="text-sm leading-snug mt-1"> Match a glycan substructure to a database of full structures </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--sys-biology icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#sys-biology"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Glycomics </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/glynsight" class="resource__link"><h3 class="h5"> Glynsight </h3></a> <div class="text-sm leading-snug mt-1"> Visualise and compare glycan expression profiles </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--protein icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#protein"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Proteins & Proteomes </li></ul></li><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--sys-biology icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#sys-biology"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Glycomics </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/glycositealign" class="resource__link"><h3 class="h5"> GlycoSiteAlign </h3></a> <div class="text-sm leading-snug mt-1"> Multiple alignment of sequences around glycosylation sites </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--protein icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#protein"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Proteins & Proteomes </li></ul></li><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--sys-biology icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#sys-biology"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Glycomics </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--db icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#db"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Database </li></ul></li></ul></div></div> <a href="/resources/glyconnect" class="resource__link"><h3 class="h5"> GlyConnect </h3></a> <div class="text-sm leading-snug mt-1"> Integrated data platform to study glycosylation </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--sys-biology icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#sys-biology"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Glycomics </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/glycodigest" class="resource__link"><h3 class="h5"> GlycoDigest </h3></a> <div class="text-sm leading-snug mt-1"> In silico digestion of glycans by exoglycosidases </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--protein icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#protein"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Proteins & Proteomes </li></ul></li><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--sys-biology icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#sys-biology"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Glycomics </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/glycomod" class="resource__link"><h3 class="h5"> GlycoMod </h3></a> <div class="text-sm leading-snug mt-1"> Possible oligosaccharide structures on proteins from masses </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--sys-biology icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#sys-biology"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Glycomics </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/glyconnect-compozitor" class="resource__link"><h3 class="h5"> GlyConnect Compozitor </h3></a> <div class="text-sm leading-snug mt-1"> Contextualises glycan composition sets </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--protein icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#protein"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Proteins & Proteomes </li></ul></li><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--sys-biology icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#sys-biology"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Glycomics </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--db icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#db"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Database </li></ul></li></ul></div></div> <a href="/resources/glyco-expasy" class="resource__link"><h3 class="h5"> Glyco@Expasy </h3></a> <div class="text-sm leading-snug mt-1"> Zooming in on web-based glycoinformatics resources </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--protein icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#protein"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Proteins & Proteomes </li></ul></li><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--sys-biology icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#sys-biology"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Glycomics </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--db icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#db"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Database </li></ul></li></ul></div></div> <a href="/resources/glyconnect-sparql-endpoint" class="resource__link"><h3 class="h5"> GlyConnect SPARQL endpoint </h3></a> <div class="text-sm leading-snug mt-1"> SPARQL access to GlyConnect </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--sys-biology icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#sys-biology"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Glycomics </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--db icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#db"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Database </li></ul></li></ul></div></div> <a href="/resources/gag-db" class="resource__link"><h3 class="h5"> GAG-DB </h3></a> <div class="text-sm leading-snug mt-1"> 3D structures of glycosaminoglycans </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--protein icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#protein"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Proteins & Proteomes </li></ul></li><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--sys-biology icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#sys-biology"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Glycomics </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/mzjava" class="resource__link"><h3 class="h5"> MzJava </h3></a> <div class="text-sm leading-snug mt-1"> Open source Java class library to process MS fragmentation </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--protein icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#protein"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Proteins & Proteomes </li></ul></li><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--sys-biology icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#sys-biology"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Glycomics </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--db icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#db"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Database </li></ul></li></ul></div></div> <a href="/resources/unilectin" class="resource__link"><h3 class="h5"> UniLectin </h3></a> <div class="text-sm leading-snug mt-1"> Structural and functional classification of lectins </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--sys-biology icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#sys-biology"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Metabolomics </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/msight" class="resource__link"><h3 class="h5"> MSight </h3></a> 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Rhea uses the ChEBI (Chemical Entities of Biological Interest) ontology to describe reaction participants and their transformations. 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tool",14,"Proteins & Proteomes","protein","Database",1,"sys-biology","gene","Glycomics",4,6,"a Creative Commons Attribution International license","https:\u002F\u002Fcreativecommons.org\u002Flicenses\u002Fby\u002F4.0\u002F","CC BY 4.0","2022-04-14T10:32:25.000000Z","Genomics",9,16,15,"Metabolomics",7,"Lipidomics","Transcriptomics","Systems Biology","2020-06-10T11:03:54.000000Z",8,3,"evolution","stru-biology",11,12,"Evolution biology",true,17,"Metagenomics","Population genetics",10,"Medicinal chemistry","Structural analysis","2020-06-18T13:59:48.000000Z","Genes & Genomes","\u003Cp\u003EDeveloped by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Ffrederique-lisacek-group\" rel=\"noopener noreferrer nofollow\"\u003EProteome Informatics group\u003C\u002Fa\u003E.\u003C\u002Fp\u003E","Evolution & Phylogeny","Drug design","the","Text mining & Machine learning","text-mining","Structural Biology","2020-06-18T13:59:49.000000Z","2023-03-23T09:28:20.000000Z","a Creative Commons Attribution-ShareAlike International license","https:\u002F\u002Fcreativecommons.org\u002Flicenses\u002Fby-sa\u002F4.0\u002F","CC BY-SA 4.0","2022-04-14T10:32:09.000000Z","the GNU General Public License","https:\u002F\u002Fwww.gnu.org\u002Flicenses\u002Fgpl-3.0.en.html","GPL 3","2020-07-16T10:56:27.000000Z","https:\u002F\u002Fwww.uniprot.org\u002Fhelp\u002Ftechnical","https:\u002F\u002Fwww.apache.org\u002Flicenses\u002FLICENSE-2.0","Apache License","2020-06-23T16:41:00.000000Z","a Creative Commons Universal license","https:\u002F\u002Fcreativecommons.org\u002Fpublicdomain\u002Fzero\u002F1.0\u002F","CC0","2022-04-14T10:32:34.000000Z",20,"https:\u002F\u002Fopensource.org\u002Flicenses\u002FMIT","MIT License","2020-06-23T16:41:42.000000Z","https:\u002F\u002Fwww.youtube.com\u002Fwatch?v=o208DwyFbNk&list=PLjnQS7gxY4Ar6VukbDHp0q0atJAFDWkRX","https:\u002F\u002Fwww.youtube.com\u002Fwatch?v=9S-A4gBz8Cg","a Creative Commons Attribution-NonCommercial-NoDerivatives International license","https:\u002F\u002Fcreativecommons.org\u002Flicenses\u002Fby-nc-nd\u002F4.0\u002F","CC BY-NC-ND 4.0","2022-04-14T10:31:12.000000Z",25,"the GNU Affero General Public License","https:\u002F\u002Fwww.gnu.org\u002Flicenses\u002Fagpl-3.0.en.html","GNU AGPL",21,"a free license for academic use. A licence is required for private companies.","http:\u002F\u002Fwww.swissdock.ch\u002Fpages\u002Ffeedback","Contact the team","2020-07-16T11:12:03.000000Z","2022-04-14T10:30:15.000000Z","a Creative Commons Attribution-NoDerivatives International license","https:\u002F\u002Fcreativecommons.org\u002Flicenses\u002Fby-nd\u002F4.0\u002F","CC BY-ND 4.0","2022-04-14T10:31:45.000000Z",617,"EpitopeXtractor","epitopextractor","https:\u002F\u002Fglycoproteome.expasy.org\u002Fepextractor\u002F","Compare glycan structures to Glydin' network's collection","2020-06-26T18:32:16.000000Z","2024-07-18T13:53:15.000000Z",0,"STRING","string","https:\u002F\u002Fstring-db.org\u002F","https:\u002F\u002Fstring-db.org\u002Fcgi\u002Fhelp","Protein-protein interaction networks and enrichment analysis","2024-11-07T13:22:53.000000Z",608,"Glydin'","glydin","https:\u002F\u002Fglycoproteome.expasy.org\u002Fepitopes\u002F","Network representation of known glycan determinants","2020-06-26T17:19:23.000000Z","2020-07-16T12:48:56.000000Z",626,"UniProtKB\u002FSwiss-Prot","uniprotkb-swiss-prot","https:\u002F\u002Fwww.uniprot.org\u002Funiprotkb?facets=reviewed%3Atrue&query=%2A","https:\u002F\u002Fwww.youtube.com\u002Fwatch?v=JSQj_Y1xMgo","Protein knowledgebase","2020-06-30T15:41:28.000000Z","2024-11-11T14:11:35.000000Z","UniProtKB","uniprotkb","https:\u002F\u002Fwww.uniprot.org\u002F","https:\u002F\u002Fwww.youtube.com\u002Fc\u002Funiprotvideos\u002Ffeatured","Protein sequence database","2024-11-11T12:53:01.000000Z",18,"SwissLipids","swisslipids","https:\u002F\u002Fwww.swisslipids.org\u002F#\u002F","Knowledge resource for lipids","2024-11-08T13:34:17.000000Z",630,"Rhea","rhea","https:\u002F\u002Fwww.rhea-db.org\u002F","https:\u002F\u002Fwww.rhea-db.org\u002Fhelp","https:\u002F\u002Fwww.rhea-db.org\u002Fhelp\u002Fsearching-rhea","Expert-curated database of biochemical reactions","2020-06-30T16:31:34.000000Z","2024-11-08T08:39:50.000000Z","ENZYME","enzyme","https:\u002F\u002Fenzyme.expasy.org\u002F","https:\u002F\u002Fftp.expasy.org\u002Fdatabases\u002Fenzyme\u002Fenzuser.txt","Enzyme nomenclature database","2024-08-16T13:35:13.000000Z",692,"UniProt SPARQL endpoint","uniprot-sparql-endpoint","https:\u002F\u002Fsparql.uniprot.org","https:\u002F\u002Fpurl.uniprot.org\u002Fhtml\u002Findex-en.html#","https:\u002F\u002Fgithub.com\u002Fsib-swiss\u002Fsparql-training\u002Ftree\u002Fmaster\u002Funiprot","SPARQL access to UniProt and related data","2020-10-27T11:07:43.000000Z","2024-11-11T15:11:26.000000Z",698,"Rhea SPARQL endpoint","sparql-rhea-db-org","https:\u002F\u002Fsparql.rhea-db.org","https:\u002F\u002Fftp.expasy.org\u002Fdatabases\u002Frhea\u002Frdf\u002Frhea_rdf_documentation.pdf","https:\u002F\u002Fgithub.com\u002Fsib-swiss\u002Fsparql-training\u002Ftree\u002Fmaster\u002Frhea","SPARQL access to the Rhea knowledgebase","2020-11-25T10:00:22.000000Z","2024-11-11T10:42:44.000000Z","\u003Cp\u003EDeveloped by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Falan-bridge-group\" rel=\"noopener noreferrer nofollow\"\u003ESwiss-Prot group\u003C\u002Fa\u003E and supported by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\" rel=\"noopener noreferrer nofollow\"\u003E\u003Cu\u003ESIB Swiss Institute of Bioinformatics\u003C\u002Fu\u003E\u003C\u002Fa\u003E.\u003C\u002Fp\u003E",705,"HMO-Glycologue","hmo-glycologue","https:\u002F\u002Fglycologue.org\u002Fm\u002F","Simulator of Human Milk Oligosaccharide synthesis","2021-01-21T19:03:24.000000Z","2024-08-21T13:51:01.000000Z",719,"SwissLipids SPARQL endpoint","swisslipids-sparql-endpoint","https:\u002F\u002Fbeta.sparql.swisslipids.org\u002F","SPARQL access to the SwissLipids knowledgebase","2022-09-16T09:38:49.000000Z","2024-11-11T10:43:50.000000Z",732,"STRING SPARQL endpoint","string-sparql-endpoint","https:\u002F\u002Fsparql.string-db.org\u002F","SPARQL access to the STRING knowledgebase","2023-10-10T12:11:19.000000Z","2024-11-07T12:49:22.000000Z",714,"OMAMO","omamo","https:\u002F\u002Fomabrowser.org\u002Foma\u002Fomamo\u002F","https:\u002F\u002Fdoi.org\u002F10.1093\u002Fbioinformatics\u002Fbtac163","OMAMO allows the user to find the best simple model organism","2022-03-30T07:35:13.000000Z","2024-10-16T13:39:01.000000Z",661,"TCS","tcs","https:\u002F\u002Fwww.swissregulon.unibas.ch\u002Fcgi-bin\u002FTCS.pl","Predict interaction specificity in bacterial signalling","2020-07-01T11:55:00.000000Z","2024-11-06T16:08:24.000000Z",559,"UniCarb-DB","unicarb-db","https:\u002F\u002Funicarb-db.expasy.org","Glycan structures and associated mass spectrometry data","2020-06-22T12:31:58.000000Z","2023-06-02T08:17:49.000000Z",573,"Swiss Mass Abacus","swiss-mass-abacus","https:\u002F\u002Fglycoproteome.expasy.org\u002Fswiss-mass-abacus\u002F","Intuitive calculator of peptide and glycopeptide masses","2020-06-23T18:24:50.000000Z","2020-07-16T12:41:11.000000Z",574,"SugarSketcher","sugarsketcher","https:\u002F\u002Fglycoproteome.expasy.org\u002Fsugarsketcher\u002F","Fast, intuitive, SNFG-compliant glycan structure drawing","2020-06-24T09:20:48.000000Z","2020-07-16T12:21:24.000000Z",575,"SugarBind","sugarbind","https:\u002F\u002Fsugarbind.expasy.org","https:\u002F\u002Fsugarbind.expasy.org\u002Fhelp","Pathogen Sugar-Binding Database","2020-06-24T09:25:27.000000Z","2024-08-15T14:25:38.000000Z",606,"GlyS3","glys3","https:\u002F\u002Fglyconnect.expasy.org\u002Fglycoql\u002F","Match a glycan substructure to a database of full structures","2020-06-26T17:09:08.000000Z","2024-08-15T14:56:35.000000Z",607,"Glynsight","glynsight","https:\u002F\u002Fglycoproteome.expasy.org\u002Fglynsight\u002F","https:\u002F\u002Fglycoproteome.expasy.org\u002Fglynsight\u002Fabout","Visualise and compare glycan expression profiles","2020-06-26T17:15:21.000000Z","2024-08-16T13:52:43.000000Z",609,"GlycoSiteAlign","glycositealign","https:\u002F\u002Fglycoproteome.expasy.org\u002Fglycositealign\u002F","Multiple alignment of sequences around glycosylation sites","2020-06-26T17:29:46.000000Z","2020-07-16T12:22:46.000000Z",610,"GlyConnect","glyconnect","https:\u002F\u002Fglyconnect.expasy.org","https:\u002F\u002Fglyconnect.expasy.org\u002Fhelp","https:\u002F\u002Fwww.youtube.com\u002Fwatch?v=L9Zn-ji4RYY&t=2619s","Integrated data platform to study glycosylation","2020-06-26T17:50:15.000000Z","2024-11-26T12:11:27.000000Z",611,"GlycoDigest","glycodigest","https:\u002F\u002Fglycoproteome.expasy.org\u002Fglycodigest\u002F","In silico digestion of glycans by exoglycosidases","2020-06-26T17:54:21.000000Z","2020-07-16T12:08:34.000000Z",645,"GlycoMod","glycomod","https:\u002F\u002Fweb.expasy.org\u002Fglycomod\u002F","Possible oligosaccharide structures on proteins from masses","2020-06-30T18:28:43.000000Z","2023-09-28T07:24:17.000000Z",704,"GlyConnect Compozitor","glyconnect-compozitor","https:\u002F\u002Fglyconnect.expasy.org\u002Fcompozitor\u002F","Contextualises glycan composition sets","2021-01-21T18:53:58.000000Z","2023-03-27T07:18:38.000000Z",707,"Glyco@Expasy","glyco-expasy","https:\u002F\u002Fglycoproteome.expasy.org\u002Fglycomics-expasy\u002F","Zooming in on web-based glycoinformatics resources","2021-06-07T08:19:20.000000Z","2024-11-21T10:50:24.000000Z",721,"GlyConnect SPARQL endpoint","glyconnect-sparql-endpoint","https:\u002F\u002Fglyconnect.expasy.org\u002Frdf","SPARQL access to GlyConnect","2022-09-16T13:52:39.000000Z","2023-10-10T12:32:47.000000Z",701,"GAG-DB","gag-db","https:\u002F\u002Fgagdb.glycopedia.eu\u002F","3D structures of glycosaminoglycans","2020-12-14T10:18:21.000000Z","2024-08-21T13:47:44.000000Z",703,"MzJava","mzjava","https:\u002F\u002Fmzjava.expasy.org\u002F","Open source Java class library to process MS fragmentation","2021-01-21T13:54:00.000000Z","2024-08-22T12:12:27.000000Z",558,"UniLectin","unilectin","https:\u002F\u002Funilectin.unige.ch\u002F","https:\u002F\u002Funilectin.unige.ch\u002Fpages\u002Fabout","Structural and functional classification of lectins","2020-06-22T12:10:25.000000Z","2024-11-26T12:17:59.000000Z",597,"MSight","msight","https:\u002F\u002Fmsight.sib.swiss\u002F","Mass Spectrometry Imager","2020-06-24T18:53:32.000000Z","2024-08-22T13:49:13.000000Z","https:\u002F\u002Fswissmodel.expasy.org\u002F","https:\u002F\u002Fswissmodel.expasy.org\u002Fdocs\u002Fhelp","https:\u002F\u002Fswissmodel.expasy.org\u002Fdocs\u002Ftutorial","MHC Motif Atlas","fastsimcoal","2024-03-01T14:11:56.000000Z","https:\u002F\u002Fprosite.expasy.org\u002Fprosite_license.html","PROSITE license","2020-07-16T11:36:48.000000Z","2022-04-14T10:30:04.000000Z","pftools","rawrr","https:\u002F\u002Fwww.bgee.org\u002Fsupport\u002Ftutorials","https:\u002F\u002Fmyhits.sib.swiss\u002Fcgi-bin\u002Fhelp"));</script><script src="/_nuxt/734f39f.js" defer></script><script src="/_nuxt/64c1a2c.js" defer></script><script src="/_nuxt/78684c8.js" defer></script><script src="/_nuxt/e4f4568.js" defer></script><script src="/_nuxt/73b71d2.js" defer></script> </body> </html>