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KEGG MODULE: M00956
<!DOCTYPE html> <html> <head> <meta charset="utf-8"> <title>KEGG MODULE: M00956</title> <link rel="stylesheet" href="/css/kegg.css" type="text/css"> <style type="text/css"> body { padding: 10px; } td { font-size:12px; font-family:verdana,arial,helvetica,sans-serif; vertical-align: top; } .definition { margin-left: 10px; margin-top: 5px; margin-bottom: 0px; } .definition table tr td { padding-right: 10px; } div.error { margin-top: 0px; margin-bottom: 20px; } </style> <script src="/js/jquery-3.1.0.min.js"></script> <script src="/js/jquery.balloon.min.js"></script> <script src="/js/kegg-timer-manager.js"></script> <script src="/js/kegg-simple-popup.js"></script> <script src="/js/kegg-mouse-capture.js"></script> <script language="javascript" type="text/javascript"> <!-- const ATTENTION_KEY = 'attentionObject' var mouse = new MouseCapture() var popupTimer = new TimerManager() $(function () { $('.change-type') .each(function () { let entry = $(this).data('entry') $(this) .on('click', function () { let url = '/kegg-bin/list_menu?id=' + entry window.open(url, 'menu_win', 'menubar=no,toolbar=no,scrollbars=yes,resizable=yes,width=500,height=700') }) .balloon({ position: 'right', contents: 'Open window to change prefix of ' + entry, css: { fontSize: '1.0em' } }) }) $('area') .on('mouseover', function () { var title = $(this).attr('title') if (!title) return if ((m = title.match(/^C\d{5}/))) { var entry = m[0] showThumbnail(entry) setEntryToStorage(entry) } else if ((m = title.match(/^[KR]\d{5}/))) { var entry = m[0] setEntryToStorage(entry) } }) .on('mouseout', function () { hideThumbnail() removeEntryFromStorage() }) $(window) .on('beforeunload', function () { removeEntryFromStorage() }) }) function open_ko_list(map, org) { var win = window.open('/kegg-bin/module_ko_list?map=' + map + '&org=' + org, '_md', 'toolbar=no,location=no,directories=no,width=700,height=400,resizable=yes,scrollbars=yes,status=no'); win.focus(); } function showThumbnail(entry) { const show = function () { var url = ""; if(!entry.match(/^[A-Z]+\d+$/)) return var url = '/kegg/misc/thumbnail/' + entry + '.gif'; var m = mouse.getCursorPosition() var $img = $('<img />') .attr('src', url) .attr('alt', 'Loading...') .on('load', function () { // ポップアップの表示位置の計算に画像サイズが必要なので、 // 画像のロードが完了してからポップアップを表示する。 $('#poplay') .html(this) .popup('init') .popup('move', m[0], m[1]+40) .show() }) } popupTimer.setTimeout(show, 1000) } function hideThumbnail(){ $('#poplay').hide() popupTimer.clear() } function setEntryToStorage (entry) { var data = { entry: entry, date: Date.now(), app: 'show_module', event: 'mouseover' } var attentionObject = JSON.stringify(data) localStorage.setItem(ATTENTION_KEY, attentionObject) } function removeEntryFromStorage () { localStorage.removeItem(ATTENTION_KEY) } // --> </script> </head> <body> <table border="0" cellspacing="0" cellpadding="0" width="100%" > <tr> <td style="width:80px;"> <a href="/kegg/module.html"><img align="middle" border="0" src="/Fig/bget/kegg3.gif" alt="KEGG"></a> </td> <td style="vertical-align:middle;"> <a name="module:M00956"></a><font class="title3"><b>Lysine degradation, bacteria, L-lysine => succinate</b></font> </td> <!-- <td align="right" valign="bottom"><button class="btn" onclick="javascript:void(window.open('/kegg/document/help_module.html','KEGG_Help','toolbar=no,location=no,directories=no,width=720,height=640,resizable=yes,scrollbars=yes'))">Help</button></td> --> </tr> </table> [ <a href="/brite/htext=ko00002a.keg&query=M00956&option=-a&node_proc=ko00002a_org&proc_enabled=rut&panel=collapse">Module menu</a> | <a href="javascript:void(open_ko_list('M00956', 'rut'))">KO/Gene/Compound list</a> | <a href="javascript:void(window.open('/kegg/document/help_module.html','KEGG_Help','width=720,height=640'))">Help</a> ] <div style="margin: 5px 0px 5px 0px;"> <input type="button" class="change-type" value="Change module type" data-entry="M00956"> </div> <div class="definition"> <table> <tr> <td>Entry</td> <td> rut_M00956 (incomplete) </td> </tr> <tr> <td>Name</td> <td>Lysine degradation, bacteria, L-lysine => succinate</td> </tr> <tr> <td>Definition</td> <td> <a href="/entry/K01582">K01582</a> <a href="/entry/K09251">K09251</a> <a href="/entry/K00137">K00137</a> <a href="/entry/K07250">K07250</a> <a href="/entry/K00135">K00135</a> <a href="/entry/K15737">K15737</a> <a href="/entry/K15736">K15736</a><br /> <button class="btn" onclick="location.href='http://www.kegg.jp/kegg-bin/view_ortholog_table?md=M00956'">Ortholog table</button> <button class="btn" onclick="location.href='/kegg-bin/show_taxonomy?id=M00956'">Taxonomy</button> <!-- <button class="btn" onclick="location.href='/kegg-bin/view_module_table?id=M00956'">Module table</button> --> </td> </tr> <tr> <td>Type</td> <td>Pathway module</td> </tr> <tr> <td>Organism</td> <td>Ruegeria sp. THAF33</td> </tr> <tr> <td>Pathway</td> <td> <span style="margin-right:5px;"> <a href="/pathway/rut00310+M00956">rut00310</a> </span> <span style="margin-right:5px;"> <a href="/pathway/rut01100+M00956">rut01100</a> </span> <span style="margin-right:5px;"> <a href="/pathway/rut01120+M00956">rut01120</a> </span> </td> </tr> <tr> <td>Reaction</td> <td><a href="/entry/R00462">R00462</a> <a href="/entry/C00047">C00047</a> -> <a href="/entry/C01672">C01672</a><br><a href="/entry/R12214">R12214</a> <a href="/entry/C01672">C01672</a> -> <a href="/entry/C12455">C12455</a><br><a href="/entry/R12215">R12215</a> <a href="/entry/C12455">C12455</a> -> <a href="/entry/C00431">C00431</a><br><a href="/entry/R02274">R02274</a> <a href="/entry/C00431">C00431</a> -> <a href="/entry/C03273">C03273</a><br><a href="/entry/R02401">R02401</a> <a href="/entry/C03273">C03273</a> -> <a href="/entry/C00489">C00489</a><br><a href="/entry/R12216">R12216</a> <a href="/entry/C00489">C00489</a> + <a href="/entry/C00026">C00026</a> -> <a href="/entry/C03196">C03196</a> + <a href="/entry/C00042">C00042</a><br><a href="/entry/R12217">R12217</a> <a href="/entry/C03196">C03196</a> -> <a href="/entry/C00026">C00026</a></td> </tr> </table> </div> <form action="/kegg-bin/show_module"> <input type="hidden" name="map" value="M00956"> <input type="hidden" name="org" value="rut"> <div style="margin-top:0px;"> <table cellpadding="10"> <tr> <td><img src="/tmp/pathway_thumbnail/rut_M00956.png?1740146390" usemap="#module1" border="0" alt="MODULE IMAGE"></td> <td><img src="/tmp/pathway_thumbnail/M00956_reaction.png?1740146390" usemap="#reaction1" border="0" alt="MODULE-REACTION IMAGE"></td> </tr> </table> <map name="module1"> <area shape="rect" id="node1_0" href="/entry/K01582" title="K01582 (E4.1.1.18)" alt="" coords="17,19,90,41"/> <area shape="rect" id="node2_1" href="/entry/K09251" title="K09251 (patA)" alt="" coords="17,77,90,100"/> <area shape="rect" id="node3_2" href="/entry/rut:FIU92_18620" title="FIU92_18620 (prr)" alt="" coords="17,136,90,159"/> <area shape="rect" id="node4_3" href="/entry/K07250" title="K07250 (gabT)" alt="" coords="17,195,90,217"/> <area shape="rect" id="node5_4" href="/entry/rut:FIU92_17150+rut:FIU92_19495+rut:FIU92_22400" title="FIU92_17150 (davD), FIU92_19495 (araE1), FIU92_22400 (araE2)" alt="" coords="17,253,90,276"/> <area shape="rect" id="node6_5" href="/entry/K15737" title="K15737 (csiD)" alt="" coords="17,312,90,335"/> <area shape="rect" id="node7_6" href="/entry/K15736" title="K15736 (lhgO)" alt="" coords="17,371,90,393"/> </map> <map name="reaction1"> <area shape="poly" id="node1" href="/entry/C00047" title="C00047 (L-Lysine)" alt="" coords="178,29,176,22,171,15,163,10,153,7,141,5,130,7,119,10,111,15,106,22,104,29,106,37,111,43,119,49,130,52,141,53,153,52,163,49,171,43,176,37"/> <area shape="rect" id="node2" href="/entry/R00462" title="R00462" alt="" coords="102,83,180,105"/> <area shape="poly" id="node3" href="/entry/C01672" title="C01672 (Cadaverine)" alt="" coords="178,159,176,151,171,145,163,139,153,136,141,135,130,136,119,139,111,145,106,151,104,159,106,166,111,173,119,178,130,181,141,183,153,181,163,178,171,173,176,166"/> <area shape="rect" id="node4" href="/entry/R12214" title="R12214" alt="" coords="102,212,180,235"/> <area shape="poly" id="node5" href="/entry/C12455" title="C12455 (5-Aminopentanal)" alt="" coords="178,288,176,281,171,274,163,269,153,265,141,264,130,265,119,269,111,274,106,281,104,288,106,295,111,302,119,307,130,311,141,312,153,311,163,307,171,302,176,295"/> <area shape="rect" id="node6" href="/entry/R12215" title="R12215" alt="" coords="102,341,180,364"/> <area shape="poly" id="node7" href="/entry/C00431" title="C00431 (5-Aminopentanoate)" alt="" coords="178,417,176,410,171,403,163,398,153,395,141,393,130,395,119,398,111,403,106,410,104,417,106,425,111,431,119,437,130,440,141,441,153,440,163,437,171,431,176,425"/> <area shape="rect" id="node8" href="/entry/R02274" title="R02274" alt="" coords="102,471,180,493"/> <area shape="poly" id="node9" href="/entry/C03273" title="C03273 (5-Oxopentanoate)" alt="" coords="178,547,176,539,171,533,163,527,153,524,141,523,130,524,119,527,111,533,106,539,104,547,106,554,111,561,119,566,130,569,141,571,153,569,163,566,171,561,176,554"/> <area shape="rect" id="node10" href="/entry/R02401" title="R02401" alt="" coords="102,600,180,623"/> <area shape="poly" id="node11" href="/entry/C00489" title="C00489 (Glutarate)" alt="" coords="178,676,176,669,171,662,163,657,153,653,141,652,130,653,119,657,111,662,106,669,104,676,106,683,111,690,119,695,130,699,141,700,153,699,163,695,171,690,176,683"/> <area shape="rect" id="node12" href="/entry/R12216" title="R12216" alt="" coords="102,729,180,752"/> <area shape="poly" id="node14" href="/entry/C03196" title="C03196 ((S)-2-Hydroxyglutarate)" alt="" coords="79,805,78,798,72,791,64,786,54,783,42,781,31,783,21,786,12,791,7,798,5,805,7,813,12,819,21,825,31,828,42,829,54,828,64,825,72,819,78,813"/> <area shape="poly" id="node15" href="/entry/C00042" title="C00042 (Succinate)" alt="" coords="178,805,176,798,171,791,163,786,153,783,141,781,130,783,119,786,111,791,106,798,104,805,106,813,111,819,119,825,130,828,141,829,153,828,163,825,171,819,176,813"/> <area shape="poly" id="node13" href="/entry/C00026" title="C00026 (2-Oxoglutarate)" alt="" coords="190,935,188,927,183,921,175,915,165,912,153,911,142,912,131,915,123,921,118,927,116,935,118,942,123,949,131,954,142,957,153,959,165,957,175,954,183,949,188,942"/> <area shape="rect" id="node16" href="/entry/R12217" title="R12217" alt="" coords="52,859,129,881"/> </map> </div> </form> <form name="taxonomy1" method="post" action="/kegg-bin/show_brite"> <input type="hidden" name="htext" value="br08610.keg"> <input type="hidden" name="option" value="-a"> <input type="hidden" name="query" 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