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Aparicio Lab | Molecular Oncology
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Integrating leading edge technologies with patient-derived xenograft models of cancer, this research is working to better understand how cancer clones evolve and to identify novel strategies for cancer treatment and predictors of response.聽 聽" /> <link rel="canonical" href="https://www.bccrc.ca/dept/mo/labs/aparicio-lab" /> <meta name="Generator" content="Drupal 10 (https://www.drupal.org)" /> <meta name="MobileOptimized" content="width" /> <meta name="HandheldFriendly" content="true" /> <meta name="viewport" content="width=device-width, initial-scale=1.0" /> <style>.logo a {background-image: url(/dept/mo/sites/molecularoncology/files/BCClogo_Research_MolecularOncology_RGB.png);background-size: contain;}body .region__network .logo a {background-size: contain}</style> <link rel="icon" href="/dept/mo/themes/custom/bccrc/favicon.ico" type="image/vnd.microsoft.icon" /> <title>Aparicio Lab | Molecular Oncology</title> <link rel="stylesheet" href="//use.typekit.net/rew6qot.css"> <link 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region--inner"> <section id="block-bccrc-breadcrumbs" class="block block--system-breadcrumb-block block-bccrc-breadcrumbs"> <nav class="breadcrumb" role="navigation" aria-labelledby="system-breadcrumb"> <h2 id="system-breadcrumb" class="visually-hidden">Breadcrumb</h2> <ol> <li> <a href="/dept/mo/">Molecular Oncology</a> </li> <li> <a href="/dept/mo/labs">Research Labs</a> </li> <li> Aparicio Lab </li> </ol> </nav> </section> <section id="block-bccrc-page-title" class="block block--page-title-block block-bccrc-page-title"> <h1><span>Aparicio Lab</span> </h1> </section> </div> </header> <section class="region region__highlight"> <div class="region__highlight--inner region--inner"> <div data-drupal-messages-fallback class="hidden"></div> </div> </section> <main role="main"> <a id="main-content" tabindex="-1"></a> <div class="layout-content"> <section class="region region__content"> <div class="region__content--inner region--inner"> <section id="block-bccrc-content" class="block block--system-main-block block-bccrc-content"> <article class="node node--lab full"> <div class="node__inner"> <footer class="node"> <aside> <a href="/dept/mo/people/samuel-aparicio" class="button"><span>Dr. Samuel Aparicio, BM BCh PhD FRCPath FRSC</span> </a> <div class="field field--field_laboratory_contact"> <div class="above field--label">Laboratory Contact</div> <div> <div class="field field--item field--field_laboratory_contact"><article class="node node--profile assistant"> <div class="field--name"> <span>Adrian Wan</span> </div> <div class="field field--field_profile_title"> <div class="field field--item field--field_profile_title">Laboratory Research and Operations Manager</div> </div> </article> </div> </div> </div> <div class="field field--field_admin_contact"> <div class="above field--label">Admin Contact</div> <div> <div class="field field--item field--field_admin_contact"><article class="node node--profile assistant"> <div class="field--name"> <span>Cynthia Ferguson</span> </div> <div class="field field--field_profile_title"> <div class="field field--item field--field_profile_title">Research Projects and Operations Leader </div> </div> </article> </div> <div class="field field--item field--field_admin_contact"><article class="node node--profile assistant"> <div class="field--name"> <span>Annelie Tam (On Leave)</span> </div> <div class="field field--field_profile_title"> <div class="field field--item field--field_profile_title">Research Administration Coordinator</div> </div> </article> </div> <div class="field field--item field--field_admin_contact"><article class="node node--profile assistant"> <div class="field--name"> <span>Irene Cho Mak</span> </div> <div class="field field--field_profile_title"> <div class="field field--item field--field_profile_title">Research Administration Coordinator</div> </div> </article> </div> </div> </div> <div class="field field--field_follow_links"> <div class="above field--label">Follow</div> <a href="https://twitter.com/bccancer_molonc" target="_blank"><i class="fa fa-twitter"></i></a><a href="https://www.twitter.com/sajraparicio" target="_blank"><i class="fa fa-twitter"></i></a><a href="https://www.linkedin.com/in/samuel-aparicio-a9884210/" target="_blank"><i class="fa fa-linkedin"></i></a> </div> </aside> </footer> <div class="node__main"> <div class="field field--body"><p>The Aparicio lab studies the genomic and phenotypic behaviour of breast and other cancers. Integrating leading edge technologies with patient-derived xenograft models of cancer, this research is working to better understand how cancer clones evolve and to identify novel strategies for cancer treatment and predictors of response. </p> <p>Dr. Aparicio鈥檚 research program encompasses the fields of cancer genomics, cancer evolution, single cell biology, mouse genetic models, high throughput screens, small molecule chemical probe development and translational breast cancer research. His work on the molecular taxonomy of breast cancer led to identification of new genes that could change the way breast cancer is diagnosed, and form the basis of next-generation treatments. This discovery was preceded by another breakthrough in decoding the genetic makeup of the most-deadly form of breast cancer, known as triple negative subtype (TNBC). Dr. Aparicio is also working to develop quantitative measures of clonal fitness in patients, including methods for single cell genome sequencing and PDX models of human cancer. He collaborates widely with other groups, with current projects including the genomic and biochemical analysis of lymphoma, ovarian cancer, and several rare pediatric cancers. He was a co-founder of Paradigm Therapeutics (now, Takeda Cambridge) and currently Contextual Genomics Ltd.</p> <p>For more information about our teams and projects, please visit our lab <a href="https://aparicio.molonc.ca/">website</a>.</p></div> </div> </div> </article> <section id="people" class="layout layout__grid"><h2 class="section__title">Members</h2><h3 class="subsection__title">Faculty/Leaders</h3><div class="flexgrid"><article class="node node--profile teaser"> <a class="picture" href="/dept/mo/people/samuel-aparicio" ><figure> <img loading="lazy" src="/dept/mo/sites/molecularoncology/files/styles/profile/public/2019-10/Sam%20Aparicio.jpg?itok=2eFD7psC" width="580" height="460" alt="" /> </figure></a> <section> <h3 class="node__title"> <a href="/dept/mo/people/samuel-aparicio" rel="bookmark">Dr. Samuel Aparicio, BM BCh PhD FRCPath FRSC</a> </h3> <div class="field field--field_profile_title"> <div class="field field--item field--field_profile_title">Distinguished Scientist, Department Head</div> </div> <div class="contact"> <a href= "https://www.bccrc.ca/dept/mo/contact/62" class="more">Send message</a> <a href="/dept/mo/people/samuel-aparicio" class="more" rel="bookmark">Bio <i class="fa fa-chevron-right"></i></a> </div> </section> </article> </div><h3 class="subsection__title">Staff</h3><div class="flexgrid"><article class="node node--profile teaser"> <figure> <img loading="lazy" src="/dept/mo/sites/molecularoncology/files/styles/profile/public/2020-02/MO_MirelaAndronescu.jpeg?itok=vCNUq_V8" width="580" height="460" alt="" /> </figure> <section> <h3 class="node__title"> Mirela Andronescu </h3> <div class="field field--field_profile_title"> <div class="field field--item field--field_profile_title">Bioinformatics Scientist</div> </div> <div class="contact"> </div> </section> </article> <article class="node node--profile teaser"> <figure> <img loading="lazy" src="/dept/mo/sites/molecularoncology/files/styles/profile/public/2019-05/BCPCM-portrait.png?itok=nEtgTObd" width="580" height="460" alt="" /> </figure> <section> <h3 class="node__title"> Shadi Ansari </h3> <div class="field field--field_profile_title"> <div class="field field--item field--field_profile_title">Microscopy Engineer</div> </div> <div class="contact"> </div> </section> </article> <article class="node node--profile teaser"> <figure> <img loading="lazy" src="/dept/mo/sites/molecularoncology/files/styles/profile/public/2021-09/VA%20Headshot%20BCCRC.png?itok=Uwsg3d-J" width="580" height="460" alt="" /> </figure> <section> <h3 class="node__title"> Vinci Au </h3> <div class="field field--field_profile_title"> <div class="field field--item field--field_profile_title">Research Assistant/Technician</div> </div> <div class="contact"> </div> </section> </article> <article class="node node--profile teaser"> <figure> <img loading="lazy" src="/dept/mo/sites/molecularoncology/files/styles/profile/public/2019-05/BCPCM-portrait.png?itok=nEtgTObd" width="580" height="460" alt="" /> </figure> <section> <h3 class="node__title"> Caroline Baril </h3> <div class="field field--field_profile_title"> <div class="field field--item field--field_profile_title">Research Assistant/Technician</div> </div> <div class="contact"> </div> </section> </article> <article class="node node--profile teaser"> <figure> <img loading="lazy" src="/dept/mo/sites/molecularoncology/files/styles/profile/public/2019-10/MO_CherieBates.jpeg?itok=QyNr1PON" width="580" height="460" alt="" /> </figure> <section> <h3 class="node__title"> Cherie Bates </h3> <div class="field field--field_profile_title"> <div class="field field--item field--field_profile_title">Research Project Manager</div> </div> <div class="contact"> </div> </section> </article> <article class="node node--profile teaser"> <figure> <img loading="lazy" src="/dept/mo/sites/molecularoncology/files/styles/profile/public/2019-10/MO_SeanBeatty.jpeg?itok=rbgGz77f" width="580" height="460" alt="" /> </figure> <section> <h3 class="node__title"> Sean Beatty </h3> <div class="field field--field_profile_title"> <div class="field field--item field--field_profile_title">Project Manager - Bioinformatics</div> </div> <div class="contact"> </div> </section> </article> <article class="node node--profile teaser"> <figure> <img loading="lazy" src="/dept/mo/sites/molecularoncology/files/styles/profile/public/2019-10/MO_VivianaCerdaLlanos.jpg?itok=9MN49GC0" width="580" height="460" alt="" /> </figure> <section> <h3 class="node__title"> Viviana Cerda Llanos </h3> <div class="field field--field_profile_title"> <div class="field field--item field--field_profile_title">Research Assistant</div> </div> <div class="contact"> </div> </section> </article> <article class="node node--profile teaser"> <figure> <img loading="lazy" src="/dept/mo/sites/molecularoncology/files/styles/profile/public/2019-05/BCPCM-portrait.png?itok=nEtgTObd" width="580" height="460" alt="" /> </figure> <section> <h3 class="node__title"> Irene Cho Mak </h3> <div class="field field--field_profile_title"> <div class="field field--item field--field_profile_title">Research Administration Coordinator</div> </div> <div class="contact"> </div> </section> </article> <article class="node node--profile teaser"> <figure> <img loading="lazy" src="/dept/mo/sites/molecularoncology/files/styles/profile/public/2019-05/BCPCM-portrait.png?itok=nEtgTObd" width="580" height="460" alt="" /> </figure> <section> <h3 class="node__title"> William Daniels </h3> <div class="field field--field_profile_title"> <div class="field field--item field--field_profile_title">Lab Assistant</div> </div> <div class="contact"> </div> </section> </article> <article class="node node--profile teaser"> <figure> <img loading="lazy" src="/dept/mo/sites/molecularoncology/files/styles/profile/public/2020-05/PEirew.jpg?itok=lWd8o9vI" width="580" height="460" alt="" /> </figure> <section> <h3 class="node__title"> Peter Eirew </h3> <div class="field field--field_profile_title"> <div class="field field--item field--field_profile_title">Staff Scientist</div> </div> <div class="contact"> </div> </section> </article> <article class="node node--profile teaser"> <figure> <img loading="lazy" src="/dept/mo/sites/molecularoncology/files/styles/profile/public/2019-10/Cynthia%20Ferguson.jpg?itok=YklNRbtT" width="580" height="460" alt="" /> </figure> <section> <h3 class="node__title"> Cynthia Ferguson </h3> <div class="field field--field_profile_title"> <div class="field field--item field--field_profile_title">Research Projects and Operations Leader </div> </div> <div class="contact"> <a href= "https://www.bccrc.ca/dept/mo/contact/155" class="more">Send message</a> </div> </section> </article> <article class="node node--profile teaser"> <figure> <img loading="lazy" src="/dept/mo/sites/molecularoncology/files/styles/profile/public/2022-02/cf%20headshot%202.JPG?itok=Mr9b00cn" width="580" height="460" alt="" /> </figure> <section> <h3 class="node__title"> Cristina Flores </h3> <div class="field field--field_profile_title"> <div class="field field--item field--field_profile_title">Research Assistant/Technician</div> </div> <div class="contact"> </div> </section> </article> <article class="node node--profile teaser"> <figure> <img loading="lazy" src="/dept/mo/sites/molecularoncology/files/styles/profile/public/2019-05/BCPCM-portrait.png?itok=nEtgTObd" width="580" height="460" alt="" /> </figure> <section> <h3 class="node__title"> Benjamin Furman </h3> <div class="field field--field_profile_title"> <div class="field field--item field--field_profile_title">Bioinformatics Scientist</div> </div> <div class="contact"> </div> </section> </article> <article class="node node--profile teaser"> <figure> <img loading="lazy" src="/dept/mo/sites/molecularoncology/files/styles/profile/public/2022-02/BaRun%20Kim%20Headshot%202.jpg?itok=02cTgiFW" width="580" height="460" alt="" /> </figure> <section> <h3 class="node__title"> BaRun Kim </h3> <div class="field field--field_profile_title"> <div class="field field--item field--field_profile_title">Research Assistant/Technician</div> </div> <div class="contact"> </div> </section> </article> <article class="node node--profile teaser"> <figure> <img loading="lazy" src="/dept/mo/sites/molecularoncology/files/styles/profile/public/2022-02/Esther%20Kong%20headshot.jpg?itok=sVXE7cro" width="580" height="460" alt="" /> </figure> <section> <h3 class="node__title"> Esther Kong </h3> <div class="field field--field_profile_title"> <div class="field field--item field--field_profile_title">Project Manager - Clinical Studies</div> </div> <div class="contact"> </div> </section> </article> <article class="node node--profile teaser"> <figure> <img loading="lazy" src="/dept/mo/sites/molecularoncology/files/styles/profile/public/2022-06/Daniel%20Lai-min.jpg?itok=xCk6Mz9B" width="580" height="460" alt="" /> </figure> <section> <h3 class="node__title"> Daniel Lai </h3> <div class="field field--field_profile_title"> <div class="field field--item field--field_profile_title">Senior Bioinformatics Scientist</div> </div> <div class="contact"> </div> </section> </article> <article class="node node--profile teaser"> <figure> <img loading="lazy" src="/dept/mo/sites/molecularoncology/files/styles/profile/public/2019-10/MO_SteveMcKinney.jpeg?itok=h-tHKjCj" width="580" height="460" alt="" /> </figure> <section> <h3 class="node__title"> Steve McKinney </h3> <div class="field field--field_profile_title"> <div class="field field--item field--field_profile_title">Staff Scientist</div> </div> <div class="contact"> </div> </section> </article> <article class="node node--profile teaser"> <figure> <img loading="lazy" src="/dept/mo/sites/molecularoncology/files/styles/profile/public/2019-05/BCPCM-portrait.png?itok=nEtgTObd" width="580" height="460" alt="" /> </figure> <section> <h3 class="node__title"> Joseph Micla </h3> <div class="field field--field_profile_title"> <div class="field field--item field--field_profile_title">Full Stack Developer</div> </div> <div class="contact"> </div> </section> </article> <article class="node node--profile teaser"> <figure> <img loading="lazy" src="/dept/mo/sites/molecularoncology/files/styles/profile/public/2019-11/Ciara%20better%20quality.jpg?itok=gvJ-Ex7-" width="580" height="460" alt="" /> </figure> <section> <h3 class="node__title"> Ciara O'Flanagan, PhD </h3> <div class="field field--field_profile_title"> <div class="field field--item field--field_profile_title">Research Associate</div> </div> <div class="contact"> </div> </section> </article> <article class="node node--profile teaser"> <figure> <img loading="lazy" src="/dept/mo/sites/molecularoncology/files/styles/profile/public/2019-05/BCPCM-portrait.png?itok=nEtgTObd" width="580" height="460" alt="" /> </figure> <section> <h3 class="node__title"> Benoit Prevost-Potvin </h3> <div class="field field--field_profile_title"> <div class="field field--item field--field_profile_title">Software Architect</div> </div> <div class="contact"> </div> </section> </article> <article class="node node--profile teaser"> <figure> <img loading="lazy" src="/dept/mo/sites/molecularoncology/files/styles/profile/public/2022-03/DSCF7309-trim-min.jpg?itok=67Po9Hp0" width="580" height="460" alt="" /> </figure> <section> <h3 class="node__title"> Robert Reinert </h3> <div class="field field--field_profile_title"> <div class="field field--item field--field_profile_title">Data Manager</div> </div> <div class="contact"> </div> </section> </article> <article class="node node--profile teaser"> <figure> <img loading="lazy" src="/dept/mo/sites/molecularoncology/files/styles/profile/public/2019-05/BCPCM-portrait.png?itok=nEtgTObd" width="580" height="460" alt="" /> </figure> <section> <h3 class="node__title"> Teresa Ruiz de Algara </h3> <div class="field field--field_profile_title"> <div class="field field--item field--field_profile_title">Research Assistant/Technician</div> </div> <div class="contact"> </div> </section> </article> <article class="node node--profile teaser"> <figure> <img loading="lazy" src="/dept/mo/sites/molecularoncology/files/styles/profile/public/2025-01/Armaghan-Sarvar.jpg?itok=KXjCSC-J" width="580" height="460" alt="" /> </figure> <section> <h3 class="node__title"> Armaghan Sarvar </h3> <div class="field field--field_profile_title"> <div class="field field--item field--field_profile_title">Bioinformatics Scientist</div> </div> <div class="contact"> </div> </section> </article> <article class="node node--profile teaser"> <figure> <img loading="lazy" src="/dept/mo/sites/molecularoncology/files/styles/profile/public/2019-05/BCPCM-portrait.png?itok=nEtgTObd" width="580" height="460" alt="" /> </figure> <section> <h3 class="node__title"> Yukta Thapliyal </h3> <div class="field field--field_profile_title"> <div class="field field--item field--field_profile_title">Programmer</div> </div> <div class="contact"> </div> </section> </article> <article class="node node--profile teaser"> <figure> <img loading="lazy" src="/dept/mo/sites/molecularoncology/files/styles/profile/public/2019-10/Adrian%20Wan%20.jpg?itok=SYNKmc_T" width="580" height="460" alt="" /> </figure> <section> <h3 class="node__title"> Adrian Wan </h3> <div class="field field--field_profile_title"> <div class="field field--item field--field_profile_title">Laboratory Research and Operations Manager</div> </div> <div class="contact"> <a href= "https://www.bccrc.ca/dept/mo/contact/133" class="more">Send message</a> </div> </section> </article> <article class="node node--profile teaser"> <figure> <img loading="lazy" src="/dept/mo/dept/mo/sites/molecularoncology/files/styles/profile/public/2019-10/MO_DamianYap.jpeg?itok=sibIOQH5" width="580" height="460" alt="" /> </figure> <section> <h3 class="node__title"> Damian Yap </h3> <div class="field field--field_profile_title"> <div class="field field--item field--field_profile_title">Research Associate</div> </div> <div class="contact"> </div> </section> </article> <article class="node node--profile teaser"> <figure> <img loading="lazy" src="/dept/mo/sites/molecularoncology/files/styles/profile/public/2020-02/MO_ElenaZaikova.jpeg?itok=xpgEZhmX" width="580" height="460" alt="" /> </figure> <section> <h3 class="node__title"> Elena Zaikova </h3> <div class="field field--field_profile_title"> <div class="field field--item field--field_profile_title">Bioinformatics Scientist</div> </div> <div class="contact"> </div> </section> </article> </div><h3 class="subsection__title">Post-Docs</h3><div class="flexgrid"><article class="node node--profile teaser"> <figure> <img loading="lazy" src="/dept/mo/sites/molecularoncology/files/styles/profile/public/2019-05/BCPCM-portrait.png?itok=nEtgTObd" width="580" height="460" alt="" /> </figure> <section> <h3 class="node__title"> Viktoriia Cherkasova </h3> <div class="field field--field_profile_title"> <div class="field field--item field--field_profile_title">Postdoctoral Fellow</div> </div> <div class="contact"> </div> </section> </article> <article class="node node--profile teaser"> <figure> <img loading="lazy" src="/dept/mo/sites/molecularoncology/files/styles/profile/public/2019-05/BCPCM-portrait.png?itok=nEtgTObd" width="580" height="460" alt="" /> </figure> <section> <h3 class="node__title"> Hoa Tran </h3> <div class="field field--field_profile_title"> <div class="field field--item field--field_profile_title">Postdoctoral Fellow</div> </div> <div class="contact"> </div> </section> </article> </div><h3 class="subsection__title">Students/Trainees</h3><div class="flexgrid"><article class="node node--profile teaser"> <figure> <img loading="lazy" src="/dept/mo/sites/molecularoncology/files/styles/profile/public/2019-05/BCPCM-portrait.png?itok=nEtgTObd" width="580" height="460" alt="" /> </figure> <section> <h3 class="node__title"> Jessica Taylor Chan </h3> <div class="field field--field_profile_title"> <div class="field field--item field--field_profile_title">Co-op Student</div> </div> <div class="contact"> </div> </section> </article> <article class="node node--profile teaser"> <figure> <img loading="lazy" src="/dept/mo/sites/molecularoncology/files/styles/profile/public/2019-05/BCPCM-portrait.png?itok=nEtgTObd" width="580" height="460" alt="" /> </figure> <section> <h3 class="node__title"> Sam Dang </h3> <div class="field field--field_profile_title"> <div class="field field--item field--field_profile_title">Directed Studies Student</div> </div> <div class="contact"> </div> </section> </article> <article class="node node--profile teaser"> <figure> <img loading="lazy" src="/dept/mo/sites/molecularoncology/files/styles/profile/public/2019-05/BCPCM-portrait.png?itok=nEtgTObd" width="580" height="460" alt="" /> </figure> <section> <h3 class="node__title"> Auden Hafezi </h3> <div class="field field--field_profile_title"> <div class="field field--item field--field_profile_title">Co-op Student</div> </div> <div class="contact"> </div> </section> </article> <article class="node node--profile teaser"> <figure> <img loading="lazy" src="/dept/mo/sites/molecularoncology/files/styles/profile/public/2019-05/BCPCM-portrait.png?itok=nEtgTObd" width="580" height="460" alt="" /> </figure> <section> <h3 class="node__title"> Eric Lee </h3> <div class="field field--field_profile_title"> <div class="field field--item field--field_profile_title">Graduate Student</div> </div> <div class="contact"> </div> </section> </article> <article class="node node--profile teaser"> <figure> <img loading="lazy" src="/dept/mo/sites/molecularoncology/files/styles/profile/public/2019-05/BCPCM-portrait.png?itok=nEtgTObd" width="580" height="460" alt="" /> </figure> <section> <h3 class="node__title"> Min-Er (Kaylee) Li </h3> <div class="field field--field_profile_title"> <div class="field field--item field--field_profile_title">Co-op Student</div> </div> <div class="contact"> </div> </section> </article> <article class="node node--profile teaser"> <figure> <img loading="lazy" src="/dept/mo/sites/molecularoncology/files/styles/profile/public/2019-05/BCPCM-portrait.png?itok=nEtgTObd" width="580" height="460" alt="" /> </figure> <section> <h3 class="node__title"> Yi Fei (Eric) Liu </h3> <div class="field field--field_profile_title"> <div class="field field--item field--field_profile_title">Graduate Student</div> </div> <div class="contact"> </div> </section> </article> <article class="node node--profile teaser"> <figure> <img loading="lazy" src="/dept/mo/sites/molecularoncology/files/styles/profile/public/2019-05/BCPCM-portrait.png?itok=nEtgTObd" width="580" height="460" alt="" /> </figure> <section> <h3 class="node__title"> Evan Wright </h3> <div class="field field--field_profile_title"> <div class="field field--item field--field_profile_title">Co-op Student</div> </div> <div class="contact"> </div> </section> </article> </div></section> <section id="publications" class="layout layout__expanding layout__publications"><h2 class="section__title">Selected Publications</h2><button class="icon" data-expand></button><div class="field field--field_text"> <article class="node publication teaser"> <h2 class="node__title"> <a href="https://www.ncbi.nlm.nih.gov/pubmed/31730858" target="_blank" rel="bookmark">Clonal Decomposition and DNA Replication States Defined by Scaled Single-Cell Genome Sequencing.</a> </h2> <div class="field field--field_journal">Cell, 2019</div> <div class="field field--field_authors">Laks, Emma, McPherson, Andrew, Zahn, Hans, Lai, Daniel, Steif, Adi, Brimhall, Jazmine, Biele, Justina, Wang, Beixi, Masud, Tehmina, Ting, Jerome, Grewal, Diljot, Nielsen, Cydney, Leung, Samantha, Bojilova, Viktoria, Smith, Maia, Golovko, Oleg, Poon, Steven, Eirew, Peter, Kabeer, Farhia, Ruiz de Algara, Teresa, Lee, So Ra, Taghiyar, M Jafar, Huebner, Curtis, Ngo, Jessica, Chan, Tim, Vatrt-Watts, Spencer, Walters, Pascale, Abrar, Nafis, Chan, Sophia, Wiens, Matt, Martin, Lauren, Scott, R Wilder, Underhill, T Michael, Chavez, Elizabeth, Steidl, Christian, Da Costa, Daniel, Ma, Yussanne, Coope, Robin J N, Corbett, Richard, Pleasance, Stephen, Moore, Richard, Mungall, Andrew J, Mar, Colin, Cafferty, Fergus, Gelmon, Karen, Chia, Stephen, , , Marra, Marco A, Hansen, Carl, Shah, Sohrab P, Aparicio, Samuel</div> <div class="field field--field_pubmed_id"><a href="https://www.ncbi.nlm.nih.gov/pubmed/31730858" target="_blank">Learn More</a></div> </article> <article class="node publication teaser"> <h2 class="node__title"> <a href="https://www.ncbi.nlm.nih.gov/pubmed/31623682" target="_blank" rel="bookmark">Dissociation of solid tumor tissues with cold active protease for single-cell RNA-seq minimizes conserved collagenase-associated stress responses.</a> </h2> <div class="field field--field_journal">Genome biology, 2019</div> <div class="field field--field_authors">O'Flanagan, Ciara H, Campbell, Kieran R, Zhang, Allen W, Kabeer, Farhia, Lim, Jamie L P, Biele, Justina, Eirew, Peter, Lai, Daniel, McPherson, Andrew, Kong, Esther, Bates, Cherie, Borkowski, Kelly, Wiens, Matt, Hewitson, Brittany, Hopkins, James, Pham, Jenifer, Ceglia, Nicholas, Moore, Richard, Mungall, Andrew J, McAlpine, Jessica N, , , Shah, Sohrab P, Aparicio, Samuel</div> <div class="field field--field_pubmed_id"><a href="https://www.ncbi.nlm.nih.gov/pubmed/31623682" target="_blank">Learn More</a></div> </article> <article class="node publication teaser"> <h2 class="node__title"> <a href="https://www.ncbi.nlm.nih.gov/pubmed/28232751" target="_blank" rel="bookmark">CLK-dependent exon recognition and conjoined gene formation revealed with a novel small molecule inhibitor.</a> </h2> <div class="field field--field_journal">Nature communications, 2017</div> <div class="field field--field_authors">Funnell, Tyler, Tasaki, Shinya, Oloumi, Arusha, Araki, Shinsuke, Kong, Esther, Yap, Damian, Nakayama, Yusuke, Hughes, Christopher S, Cheng, S-W Grace, Tozaki, Hirokazu, Iwatani, Misa, Sasaki, Satoshi, Ohashi, Tomohiro, Miyazaki, Tohru, Morishita, Nao, Morishita, Daisuke, Ogasawara-Shimizu, Mari, Ohori, Momoko, Nakao, Shoichi, Karashima, Masatoshi, Sano, Masaya, Murai, Aiko, Nomura, Toshiyuki, Uchiyama, Noriko, Kawamoto, Tomohiro, Hara, Ryujiro, Nakanishi, Osamu, Shumansky, Karey, Rosner, Jamie, Wan, Adrian, McKinney, Steven, Morin, Gregg B, Nakanishi, Atsushi, Shah, Sohrab, Toyoshiba, Hiroyoshi, Aparicio, Samuel</div> <div class="field field--field_pubmed_id"><a href="https://www.ncbi.nlm.nih.gov/pubmed/28232751" target="_blank">Learn More</a></div> </article> <article class="node publication teaser"> <h2 class="node__title"> <a href="https://www.ncbi.nlm.nih.gov/pubmed/28211448" target="_blank" rel="bookmark">CX-5461 is a DNA G-quadruplex stabilizer with selective lethality in BRCA1/2 deficient tumours.</a> </h2> <div class="field field--field_journal">Nature communications, 2017</div> <div class="field field--field_authors">Xu, Hong, Di Antonio, Marco, McKinney, Steven, Mathew, Veena, Ho, Brandon, O'Neil, Nigel J, Santos, Nancy Dos, Silvester, Jennifer, Wei, Vivien, Garcia, Jessica, Kabeer, Farhia, Lai, Daniel, Soriano, Priscilla, Ban谩th, Judit, Chiu, Derek S, Yap, Damian, Le, Daniel D, Ye, Frank B, Zhang, Anni, Thu, Kelsie, Soong, John, Lin, Shu-Chuan, Tsai, Angela Hsin Chin, Osako, Tomo, Algara, Teresa, Saunders, Darren N, Wong, Jason, Xian, Jian, Bally, Marcel B, Brenton, James D, Brown, Grant W, Shah, Sohrab P, Cescon, David, Mak, Tak W, Caldas, Carlos, Stirling, Peter C, Hieter, Phil, Balasubramanian, Shankar, Aparicio, Samuel</div> <div class="field field--field_pubmed_id"><a href="https://www.ncbi.nlm.nih.gov/pubmed/28211448" target="_blank">Learn More</a></div> </article> <article class="node publication teaser"> <h2 class="node__title"> <a href="https://www.ncbi.nlm.nih.gov/pubmed/27161491" target="_blank" rel="bookmark">The somatic mutation profiles of 2,433 breast cancers refines their genomic and transcriptomic landscapes.</a> </h2> <div class="field field--field_journal">Nature communications, 2016</div> <div class="field field--field_authors">Pereira, Bernard, Chin, Suet-Feung, Rueda, Oscar M, Vollan, Hans-Kristian Moen, Provenzano, Elena, Bardwell, Helen A, Pugh, Michelle, Jones, Linda, Russell, Roslin, Sammut, Stephen-John, Tsui, Dana W Y, Liu, Bin, Dawson, Sarah-Jane, Abraham, Jean, Northen, Helen, Peden, John F, Mukherjee, Abhik, Turashvili, Gulisa, Green, Andrew R, McKinney, Steve, Oloumi, Arusha, Shah, Sohrab, Rosenfeld, Nitzan, Murphy, Leigh, Bentley, David R, Ellis, Ian O, Purushotham, Arnie, Pinder, Sarah E, B酶rresen-Dale, Anne-Lise, Earl, Helena M, Pharoah, Paul D, Ross, Mark T, Aparicio, Samuel, Caldas, Carlos</div> <div class="field field--field_pubmed_id"><a href="https://www.ncbi.nlm.nih.gov/pubmed/27161491" target="_blank">Learn More</a></div> </article> <article class="node publication teaser"> <h2 class="node__title"> <a href="https://www.ncbi.nlm.nih.gov/pubmed/23644459" target="_blank" rel="bookmark">The shaping and functional consequences of the microRNA landscape in breast cancer.</a> </h2> <div class="field field--field_journal">Nature, 2013</div> <div class="field field--field_authors">Dvinge, Heidi, Git, Anna, Gr盲f, Stefan, Salmon-Divon, Mali, Curtis, Christina, Sottoriva, Andrea, Zhao, Yongjun, Hirst, Martin, Armisen, Javier, Miska, Eric A, Chin, Suet-Feung, Provenzano, Elena, Turashvili, Gulisa, Green, Andrew, Ellis, Ian, Aparicio, Sam, Caldas, Carlos</div> <div class="field field--field_pubmed_id"><a href="https://www.ncbi.nlm.nih.gov/pubmed/23644459" target="_blank">Learn More</a></div> </article> <article class="node publication teaser"> <h2 class="node__title"> <a href="https://www.ncbi.nlm.nih.gov/pubmed/23445095" target="_blank" rel="bookmark">The implications of clonal genome evolution for cancer medicine.</a> </h2> <div class="field field--field_journal">The New England journal of medicine, 2013</div> <div class="field field--field_authors">Aparicio, Samuel, Caldas, Carlos</div> <div class="field field--field_pubmed_id"><a href="https://www.ncbi.nlm.nih.gov/pubmed/23445095" target="_blank">Learn More</a></div> </article> <article class="node publication teaser"> <h2 class="node__title"> <a href="https://www.ncbi.nlm.nih.gov/pubmed/22495314" target="_blank" rel="bookmark">The clonal and mutational evolution spectrum of primary triple-negative breast cancers.</a> </h2> <div class="field field--field_journal">Nature, 2012</div> <div class="field field--field_authors">Shah, Sohrab P, Roth, Andrew, Goya, Rodrigo, Oloumi, Arusha, Ha, Gavin, Zhao, Yongjun, Turashvili, Gulisa, Ding, Jiarui, Tse, Kane, Haffari, Gholamreza, Bashashati, Ali, Prentice, Leah M, Khattra, Jaswinder, Burleigh, Angela, Yap, Damian, Bernard, Virginie, McPherson, Andrew, Shumansky, Karey, Crisan, Anamaria, Giuliany, Ryan, Heravi-Moussavi, Alireza, Rosner, Jamie, Lai, Daniel, Birol, Inanc, Varhol, Richard, Tam, Angela, Dhalla, Noreen, Zeng, Thomas, Ma, Kevin, Chan, Simon K, Griffith, Malachi, Moradian, Annie, Cheng, S-W Grace, Morin, Gregg B, Watson, Peter, Gelmon, Karen, Chia, Stephen, Chin, Suet-Feung, Curtis, Christina, Rueda, Oscar M, Pharoah, Paul D, Damaraju, Sambasivarao, Mackey, John, Hoon, Kelly, Harkins, Timothy, Tadigotla, Vasisht, Sigaroudinia, Mahvash, Gascard, Philippe, Tlsty, Thea, Costello, Joseph F, Meyer, Irmtraud M, Eaves, Connie J, Wasserman, Wyeth W, Jones, Steven, Huntsman, David, Hirst, Martin, Caldas, Carlos, Marra, Marco A, Aparicio, Samuel</div> <div class="field field--field_pubmed_id"><a href="https://www.ncbi.nlm.nih.gov/pubmed/22495314" target="_blank">Learn More</a></div> </article> <article class="node publication teaser"> <h2 class="node__title"> <a href="https://www.ncbi.nlm.nih.gov/pubmed/22522925" target="_blank" rel="bookmark">The genomic and transcriptomic architecture of 2,000 breast tumours reveals novel subgroups.</a> </h2> <div class="field field--field_journal">Nature, 2012</div> <div class="field field--field_authors">Curtis, Christina, Shah, Sohrab P, Chin, Suet-Feung, Turashvili, Gulisa, Rueda, Oscar M, Dunning, Mark J, Speed, Doug, Lynch, Andy G, Samarajiwa, Shamith, Yuan, Yinyin, Gr盲f, Stefan, Ha, Gavin, Haffari, Gholamreza, Bashashati, Ali, Russell, Roslin, McKinney, Steven, , , Langer酶d, Anita, Green, Andrew, Provenzano, Elena, Wishart, Gordon, Pinder, Sarah, Watson, Peter, Markowetz, Florian, Murphy, Leigh, Ellis, Ian, Purushotham, Arnie, B酶rresen-Dale, Anne-Lise, Brenton, James D, Tavar茅, Simon, Caldas, Carlos, Aparicio, Samuel</div> <div class="field field--field_pubmed_id"><a href="https://www.ncbi.nlm.nih.gov/pubmed/22522925" target="_blank">Learn More</a></div> </article> </div></section> <section id="projects" class="layout layout__expanding layout__projects"><h2 class="section__title">Projects</h2><button class="icon" data-expand></button><div class="field field--field_text"> <article class="node node--project teaser"> <div class="node__inner"> <h2 class="node__title"> <a href="/dept/mo/projects/novel-treatment-strategies-dna-damage-repair-deficient-tumours" rel="bookmark" ><span>Novel treatment strategies for DNA damage repair-deficient tumours</span> </a> </h2> <div class="field field--body"><p>Mutation or loss of DNA damage repair genes, such as BRCA1/2 can lead to genomic instability, the onset of cancer, and can facilitate the development of resistance to DNA-damaging chemotherapy. Our lab is investigating novel drug interventions which may improve the outcome for patients with DNA repair defects</p></div> <ul class="links inline"><li class="node-readmore"><a href="/dept/mo/projects/novel-treatment-strategies-dna-damage-repair-deficient-tumours" rel="tag" title="Novel treatment strategies for DNA damage repair-deficient tumours" hreflang="en">More Info<span class="visually-hidden"> about Novel treatment strategies for DNA damage repair-deficient tumours</span></a></li></ul> </div> </article> <article class="node node--project teaser"> <div class="node__inner"> <h2 class="node__title"> <a href="/dept/mo/projects/tumour-heterogeneity-and-clonal-dynamics-breast-cancer" rel="bookmark" ><span>Tumour heterogeneity and clonal dynamics of breast cancer </span> </a> </h2> <div class="field field--body"><p>Cancer is a dynamic disease, and as a result a single tumour mass may comprise a diverse collection cancer clones with distinct phenotypes, mutations or sensitivity to treatment. Integrating deep and single cell genomic and transcriptomic sequencing with statistical modeling of clonal fitness, our lab is developing methods to study and predict the clonal dynamics of cancer in PDX and cell models, under natural and selective pressures such as drug intervention or CRISPR knockout.</p></div> <ul class="links inline"><li class="node-readmore"><a href="/dept/mo/projects/tumour-heterogeneity-and-clonal-dynamics-breast-cancer" rel="tag" title="Tumour heterogeneity and clonal dynamics of breast cancer " hreflang="en">More Info<span class="visually-hidden"> about Tumour heterogeneity and clonal dynamics of breast cancer </span></a></li></ul> </div> </article> <article class="node node--project teaser"> <div class="node__inner"> <h2 class="node__title"> <a href="/dept/mo/projects/methods-studying-cancers-single-cell-resolution" rel="bookmark" ><span>Methods for studying cancers at single cell resolution</span> </a> </h2> <div class="field field--body"><p>Single cell sequencing technologies allow the study of phenomena such as tumour heterogeneity, clonal dynamics, tissue microenvironments as well as the identification of novel and intermediary cell types, which may not be easily resolved with bulk sequencing strategies. Our lab has developed methods for the surveying of single cell genomics, and integrates them with methods to study the epigenome and transcriptome at single cell resolution, as well as with imaging techniques for spatial context</p></div> <ul class="links inline"><li class="node-readmore"><a href="/dept/mo/projects/methods-studying-cancers-single-cell-resolution" rel="tag" title="Methods for studying cancers at single cell resolution" hreflang="en">More Info<span class="visually-hidden"> about Methods for studying cancers at single cell resolution</span></a></li></ul> </div> </article> </div></section> <section class="has-logos layout layout__sponsors"> <h2 class="section__title">Sponsors</h2> <div class="flexgrid"> <div class="field--item field--field_sponsors"><a href="https://bccancerfoundation.com/" target="_blank"> <img loading="lazy" src="/dept/mo/sites/molecularoncology/files/styles/square_logo/public/2019-08/bccf-logo.png?itok=4-36ljEN" width="200" height="115" alt="" /> </a></div> <div class="field--item field--field_sponsors"><a href="http://www.cihr-irsc.gc.ca/e/193.html" target="_blank"> <img loading="lazy" src="/dept/mo/sites/molecularoncology/files/styles/square_logo/public/2019-08/leaf-cihr-colour-en_0.jpg?itok=6rRZE4fK" width="200" height="129" alt="" /> </a></div> <div class="field--item field--field_sponsors"><a href="http://www.cancer.ca/en/?region=bc" target="_blank"> <img loading="lazy" src="/dept/mo/sites/molecularoncology/files/styles/square_logo/public/2019-08/CCS%20Logo.png?itok=XUOO-5B5" width="145" height="53" alt="" /> </a></div> <div class="field--item field--field_sponsors"><a href="https://standuptocancer.org/" target="_blank"> <img loading="lazy" src="/dept/mo/sites/molecularoncology/files/styles/square_logo/public/2019-08/SU2C%20Logo.png?itok=-nWCbt2I" width="200" height="155" alt="" /> </a></div> <div class="field--item field--field_sponsors"><a href="https://www.tfri.ca/" target="_blank"> <img loading="lazy" src="/dept/mo/sites/molecularoncology/files/styles/square_logo/public/2019-08/TFRI%20Logo.png?itok=wwW6XwFW" width="200" height="32" alt="" /> </a></div> <div class="field--item field--field_sponsors"><a href="https://www.cancerresearchuk.org/" target="_blank"> <img loading="lazy" src="/dept/mo/sites/molecularoncology/files/styles/square_logo/public/2019-08/CRUK%20Logo.jpg?itok=XvikX7dY" width="200" height="94" alt="" /> </a></div> <div class="field--item field--field_sponsors"><a href="https://www.innovation.ca/" target="_blank"> <img loading="lazy" src="/dept/mo/sites/molecularoncology/files/styles/square_logo/public/2019-08/CFI%20Logo.jpg?itok=vhpvGedE" width="200" height="67" alt="" /> </a></div> </div> </section> </section> </div> </section> </div> <a class="top" href="#main-content">Back to top</a> </main> <section class="region region__cta"> <div class="region__cta--inner region--inner"> <section id="block-sitecalltoaction" class="block block--block-contenta8a59224-4648-42d5-b71c-294b3c630d8a block-sitecalltoaction"> <div class="field field--body"><p>BC Cancer Foundation is the fundraising partner of BC Cancer, which includes BC Cancer Research. Together with our donors, we are changing cancer outcomes for British Columbians by funding innovative research and personalized treatment and care.</p> <p><a class="button" href="https://bccancerfoundation.com/donations/general-donation-form/?s_src=BCCRCFooter" target="_blank">Donate Today</a></p></div> </section> </div> </section> <footer class="page" role="contentinfo"> <section class="region region__footer"> <div class="region__footer--inner region--inner"> <section id="block-bccrc-branding" class="block block--system-branding-block block-bccrc-branding"> <a href="/dept/mo/" title="Home" rel="home"> <img src="/dept/mo/sites/molecularoncology/files/BCClogo_Research_MolecularOncology_RGB.png" alt="Home" /> </a> </section> <section id="block-contactus" class="block block--block-content2314a90f-9af6-4a1e-8cf5-6a294688e075 block--contact-us block-contactus"> <h2 class="section__title">Contact Us</h2> <div class="field field--body"><p>BC Cancer Research Institute<br> 675 West 10th Avenue<br> Vancouver, BC V5Z 1L3</p> <p>604 675 8000</p> <p>Toll Free: 1 888 675 8001</p></div> </section> <section id="block-followus" class="block block--block-content06fb6d8a-948b-4134-bf4f-c16a4f797215 block--follow-us block-followus"> <h2 class="section__title">Follow Us</h2> <div class="field field--body"><p><a class="fa fa-linkedin" href="https://www.linkedin.com/company/bc-cancer/"> </a><a class="fa fa-twitter" href="https://twitter.com/BCCancer"> </a><a class="fa fa-instagram" href="https://www.instagram.com/bccancer/"> </a></p></div> </section> <section id="block-phsa" class="block block--block-contente498e60d-8221-412d-8ddc-717f5bb18010 block-phsa"> <div class="field field--body"><p><a href="http://www.phsa.ca" target="_blank"><img alt="PHSA" src="https://www.bccrc.ca/dept/mo/sites/molecularoncology/files/PHSA-logo.svg"></a></p></div> </section> </div> </section> </footer> <section class="region region__copyright"> <div class="region__copyright--inner region--inner"> <nav role="navigation" aria-labelledby="block-bccrc-footer-menu" id="block-bccrc-footer"> <h2 class="visually-hidden" id="block-bccrc-footer-menu">Footer menu</h2> <ul class="menu"> <li class="menu-item"> <a href="http://www.phsa.ca/privacy">Privacy Policy</a> </li> <li>Copyright © BC Cancer. 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