Phenix

<!DOCTYPE html> <html lang="en" class="h-100"> <head> <meta charset="utf-8"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <meta name="viewport" content="width=device-width, initial-scale=1">  <meta name="description" content="Phenix online main site"> <meta name="author" content="Phenix group"> <title>Phenix</title> <style></style>  <link href="https://cdn.jsdelivr.net/npm/bootstrap@5.0.1/dist/css/bootstrap.min.css" rel="stylesheet" integrity="sha384-+0n0xVW2eSR5OomGNYDnhzAbDsOXxcvSN1TPprVMTNDbiYZCxYbOOl7+AMvyTG2x" crossorigin="anonymous">  <script src="https://code.jquery.com/jquery-3.6.0.min.js" integrity="sha256-/xUj+3OJU5yExlq6GSYGSHk7tPXikynS7ogEvDej/m4=" crossorigin="anonymous"> </script>  <script src="https://cdn.jsdelivr.net/npm/bootstrap@5.0.1/dist/js/bootstrap.bundle.min.js" integrity="sha384-gtEjrD/SeCtmISkJkNUaaKMoLD0//ElJ19smozuHV6z3Iehds+3Ulb9Bn9Plx0x4" crossorigin="anonymous"></script>  <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/bootstrap-icons@1.5.0/font/bootstrap-icons.css">  <link rel="stylesheet" href="/phenixwebsite_static/mainsite/css/mainsite.css" type="text/css">    </head> <body class="d-flex flex-column h-100"> <header> <div class="collapse" id="navbarHeader"> <div class="container"> <div class="row"> <div class="col-sm-6 col-md-6 py-4"> <h4>About</h4> <p>Phenix is a comprehensive software package for macromolecular structure determination that handles data from diffraction (X-ray, neutron and electron) and electron cryo-microscopy. Tasks include data-quality assessment, map improvement, model building, the validation/rebuilding/refinement cycle and deposition. Developers emphasize automation to minimize repetitive and time-consuming manual tasks. The graphical user interface streamlines the transition between programs, project tracking and re-running of previous tasks.</p> </div> <div class="col-sm-6 col-md-6 py-4"> <div class="row"> <div class="col"> <h4>Links</h4> <ul class="list-unstyled"> <li><a href="/download">Download Phenix</a></li> <li><a href="/getting_started">Getting Started</a></li> <li><a href="/workshops_tutorials">Workshops & Tutorials</a></li> <li><a href="/documentation/">Documentation</a></li> <li><a href="/help">Get Help</a></li> <li><a href="/people">Phenix Developers</a></li> <li><a href="/national_resource">Phenix National Resource</a></li> <li><a href="/consortium">Phenix Industrial Consortium</a></li> <li><a href="/metrics">Metrics</a></li> <li><a href="/newsletter">Newsletter</a></li> <li><a href="/papers">Publications</a></li> <li><a href="http://cci.lbl.gov/docs/cctbx/">cctbx</a></li> </ul> </div> <div class="col"> <h4>More</h4> <ul class="list-unstyled"> <li><a href="/about">About Phenix</a></li> <li><a href="/documentation/CHANGES">What's New</a></li> <li><a href="/presentations">Presentations</a></li> <li><a href="https://cci.lbl.gov/ceres">CERES Server</a></li> <li><a href="https://prediction.phenix-online.org/">Phenix Prediction Server</a></li> <li><a href="/phenix_data">Download Data</a></li> <li><a href="https://cci.lbl.gov/docs/phenix/">Phenix Developers Documentation</a></li> <li><a href="/license">Licensing</a></li> <li><a href="/acknowledge">Acknowledgements</a></li> <li><a href="/contact">Contact Us</a></li> </ul> </div> </div> </div> </div> </div> </div> <div class="navbar navbar-light shadow-sm"> <div class="container"> <a href="/" class="navbar-brand d-flex align-items-center"> <img src="/phenixwebsite_static/mainsite/img/phenix-logo-1.jpg" height="200">  </a>  <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbarHeader" aria-controls="navbarHeader" aria-expanded="false" aria-label="Toggle navigation"> <span style="margin-right: 10px;">Menu</span> <span class="navbar-toggler-icon"></span> </button> </div> </div> </header> <main class="flex-shrink-0">  <div class="container py-5"> <h2>Acknowledgements</h2> <p class="lead">The Phenix developers would like to thank the following for their contributions.</p> <ul> <li> The CCP4 developers for permitting us to use the <a href="http://www.ccp4.ac.uk/">CCP4</a> MTZ library </li> <li> Garib Murshudov and Alexei Vagin for creating and distributing the <a href="http://www.ccp4.ac.uk/">CCP4</a> monomer library </li> <li> Kevin Cowtan for writing the <a href="http://www.ysbl.york.ac.uk/~cowtan/clipper/clipper.html">Clipper libraries</a> and contributions to the cctbx </li> <li> Alexandre Urzhumtsev for help with methods and algorithms development </li> <li> David Abrahams (author of the <a href="http://www.boost.org/libs/python/doc/">Boost.Python library</a>) </li> <li> Ethan Merritt and Jay Painter for writing the <a href="http://pymmlib.sourceforge.net/">mmLib Python Macromolecular Library</a> </li>  <li> Luc Bourhis and Marat Mustyakimov for major contributions to cctbx </li> <li> The <a href="http://www.cgl.ucsf.edu">UCSF Computer Graphics Laboratory</a> for writing KSDSSP </li> <li> Bob Edgar for writing <a href="http://drive5.com/muscle/">MUSCLE</a> </li> <li> Piotr Rotkiewicz for writing <a href="http://www.pirx.com/pulchra/index.shtml">PULCHRA</a> </li> <li> Robin Dunn and many others for developing and supporting <a href="http://www.wxpython.org">wxPython</a>. </li> <li> Authors of many other open-source packages used in Phenix: <a href="http://www.numpy.org">NumPy</a>, <a href="http://matplotlib.sf.net">Matplotlib</a>,  <a href="http://www.reportlab.com/software/opensource/">ReportLab</a>,  </li> <li> NIH/NIGMS for Program Project funding (GM063210) </li> <li> The Phenix Industrial Consortium for funding and participants for their feedback </li> <li> <a href="https://www.lbl.gov/">Lawrence Berkley Laboratory</a> for initial funding for Phenix </li> <li> All of the Phenix users for their feedback </li> </ul>  </div>   </main> <footer class="footer mt-auto text-muted py-3 bg-light"> <div class="container "> <div class="row row-cols-2 row-cols-md-4">  <div class="col py-3"> <h4>Contact</h4> <ul class="list-unstyled">  <li><a href="/cdn-cgi/l/email-protection#5e363b322e1e2e363b3037267331303237303b70312c39">Email us</a></li> </ul> </div> <div class="col py-3"> <h4>Disclaimer</h4> <a href="https://www.lbl.gov/Disclaimers.html">Privacy & Security Notice</a><br> <a href="/about_this_website">About this website</a> </div> <div class="col py-3"> </div> <div class="col py-3"> <p class="float-end mb-1"> <a href="#">Back to top</a> </p> </div> </div> </div> </footer> <script data-cfasync="false" src="/cdn-cgi/scripts/5c5dd728/cloudflare-static/email-decode.min.js"></script></body> </html>

CINXE.COM

Phenix