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RRID | Searching in Community Resources

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Many functions will not work if you continue with JavaScript disabled. </div> </noscript> <div id="loading" class="page-overlay"> <div class="center-style-1"> <div class="center-style-2"> <div class="center-style-3"> <center> <h2>Searching across hundreds of databases <i class="fa fa-cog fa-spin"></i></h2> <img src="/images/scicrunch.png" style="height: 100px" /> </center> </div> </div> </div> </div> <div id="restarting-warning" class="page-overlay"> <div class="center-style-1"> <div class="center-style-2"> <div class="center-style-3"> <center> <h2>Our searching services are busy right now. Your search will reload in five seconds.</h2> </center> </div> </div> </div> </div> <div id="try-again-later-warning" class="alert alert-warning" role="alert"> Our searching services are busy right now. 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Leaving the community will revoke any permissions you have been granted in this community. </p> <div class="btn-u btn-u-default close-btn">No</div> <a class="btn-u btn-u-red" href="/forms/leave.php?cid=510">Yes</a> </div> <ol id="joyRideHeaderContent" style="display:none"> <li data-class="joyride-about" data-text="Next" data-options="tipLocation:bottom;tipAnimation:fade"> <h2>About</h2> <p> Find out information about this community and visit other pages within it. You can also add a resource to the community here. </p> </li> <li data-class="joyride-community-resources" data-text="Next" data-options="tipLocation:bottom;tipAnimation:fade"> <h2>Community Resources</h2> <p> Search through data specific to this community </p> </li> <li data-class="joyride-more-resources" data-text="Next" data-options="tipLocation:bottom;tipAnimation:fade"> <h2>More Resources</h2> <p> Search through all of SciCrunch's data. </p> </li> <li data-class="joyride-literature" data-text="Next" data-options="tipLocation:bottom;tipAnimation:fade"> <h2>Literature</h2> <p> Search through literature data. </p> </li> </ol> <script type="text/javascript"> $(function() { $(".tutorial-header-btn").click(function () { $("body").joyride(); $("body").joyride("destroy"); // joyride bug, when multiple joyrides on a page $(".joyride-next-tip").show(); $("#joyRideHeaderContent").joyride( { "postStepCallback": function(index, tip) { }, "startOffset": 0, "tip_class": false, } ); }); }); </script> <div class="container login-backing" style="display:none;position: fixed;left:0;top:0;width:100%;height:100%;z-index: 20000;background: rgba(0,0,0,.8)"> <!--Reg Block--> <form method="post" action="/forms/login.php?cid=510"> <div class="reg-block login-box"> <div class="login-backing close dark">X</div> <div class="reg-block-header"> <h2>Log in</h2> </div> <div class="input-group margin-bottom-20"> <span class="input-group-addon"><i class="fa fa-envelope"></i></span> <input type="text" class="form-control" name="email" placeholder="Email"> </div> <div class="input-group margin-bottom-20"> <span class="input-group-addon"><i class="fa fa-lock"></i></span> <input type="password" class="form-control" name="password" placeholder="Password"> </div> <a class="referer-link" href="/resources/join">Create an account</a><br/> <span class="simple-toggle login-backing" modal=".forgot-password" style="cursor:pointer;color:#72c02c" title="Forgot Password">Forgot password?</span><br/> <hr> <div class="row"> <div class="col-md-10 col-md-offset-1"> <button type="submit" class="btn-u btn-block">Log In</button> </div> </div> </div> </form> <!--End Reg Block--> </div><!--/container--> <div class="back-hide forgot-password no-padding"> <div class="close dark less-right">X</div> <div id="sky-form4" class="sky-form" novalidate="novalidate"> <header>Forgot Password</header> <fieldset> <p> If you have forgotten your password you can enter your email here and get a temporary password sent to your email. <div class="forgot-pw-container"> <form class="forgot-pw-form"> <div class="input-group"> <input type="text" class="form-control forgot-email" name="query" placeholder="Account Email"/> <span class="input-group-btn"> <button class="btn-u" type="submit">Send</button> </span> </div> </form> </div> </p> </fieldset> </div> </div> <script type="text/javascript" src="/js/facets-wordcloud30.js"></script> <script> document.categoryGraphData = null; </script> <link href="/css/rin.css" rel="stylesheet" /> <div class="rin"> <div class="report"> <div class="header-scicrunch"> <div class="container"> <div class="row"> <div> <h1 style="margin-top:10px">&nbsp;Tools&nbsp;&nbsp;<a target='_self' href='https://rrid.site/rin/rrids' class='btn btn-primary'><i class='fa fa-bars'></i> Select Another Resource Report Type</a> </h1> <ol class="breadcrumb"> <li> <a class="color-white " target="_self" href="https://rrid.site" > Home </a> </li> <li> <a class="color-white " target="_self" href="https://rrid.site/rin/rrids" > Resource Reports </a> </li> <li> <a class="color-white active" target="_self" > Tools </a> </li> </ol> </div> </div> </div> </div> <div class="header-background-resolver"></div> <div class="row"> <div class="container"> <div class="wrapper"> <div class="row"> <div class="col-md-12"> <div> <div class="row"> <div class="col-md-12"> <p style="margin-bottom: 0px" class="truncate-medium" id="sc-descr"><a href="https://scicrunch.org/scicrunch/about/sources/nlx_144509-1">SciCrunch Registry</a> is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to <a href="https://scicrunch.org/create/resource">register your resource</a>.</p> </div> <div class="col-md-12 results-number" style="margin-top:10px;"> <style> .search-block-v2 h2 { color: #585f69; 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var synonyms = "true"; if(synonyms == "true") synonyms_checked_flag = true; $('#ScheckBox').prop('checked', synonyms_checked_flag || false); }); $('#ScheckBox').on('change', function() { localStorage.checked = $(this).is(':checked'); if(localStorage.checked == "true") window.location = window.location.href.replace("&exclude=synonyms", ""); else window.location = window.location.href.replace("#", "&exclude=synonyms#"); }); $(function(){ var acronyms_checked_flag = false; var acronyms = "false"; if(acronyms == "true") acronyms_checked_flag = true; $('#AcheckBox').prop('checked', acronyms_checked_flag || false); }); $('#AcheckBox').on('change', function() { localStorage.checked = $(this).is(':checked'); if(localStorage.checked == "true") window.location = window.location.href.replace("#", "&include=acronyms#"); else window.location = window.location.href.replace("&include=acronyms", ""); }); </script> </div> </div> <div class="row"> <div class="col-md-2 hidden-xs related-search"> <div class="row" style="margin-top:10px"> <div class="col-md-12 col-sm-4"> <a href="javascript:void(0)" class="hidden-default-toggle"> Filter by records added date</a> <div class="hidden-default"> <input id="modified-date-picker30" style="color:black" /> <div class="btn-group"> <a href="javascript:void(0)" id="modified-date-picker-before"><button class="btn btn-default">Before</button></a> <a href="javascript:void(0)" id="modified-date-picker-after"><button class="btn btn-default">After</button></a> </div> </div> <style> .hidden-default { display: none; 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}); $(".hidden-default-toggle").click(function() { $(".hidden-default").slideToggle(); }); }); </script> <br/> <a href="https://rrid.site/data/source/nlx_144509-1/search?q=%2A&l=&facet[]=Keywords%3Aanalysis&filter[]=gte:20241102">See new records</a> <hr /> <h3>Options</h3> <ul class="list-group"> <li class="list-group-item"><a href="#" class="btn-login">Log in for Collection Options</a></li> </ul> <hr class="hr-small" /> <h3>Current Facets and Filters</h3><ul class="list-unstyled"><li>Keywords:analysis (facet)<a href="https://rrid.site/data/source/nlx_144509-1/search?q=%2A&l="><i class="fa red-x fa-times-circle"></i></a></li></ul><hr style="margin-top:10px;margin-bottom:15px;"/> <div> <h3>Facets</h3> <form class="multi-facets" url="https://rrid.site/data/source/nlx_144509-1/search?q=%2A&l=&facet[]=Keywords%3Aanalysis"> <ul class="list-group sidebar-nav-v1" id="sidebar-nav"> <li class="list-group-item list-toggle" data-toggle="collapse" data-parent="#sidebar-nav" href="#collapse-Resource_Type"> <a href="javascript:void(0)">Resource Type</a> <ul id="collapse-Resource_Type" class="collapse"> <li style="border-top: 1px solid #ddd"> <a href="https://rrid.site/data/source/nlx_144509-1/search?q=%2A&l=&facet[]=Keywords%3Aanalysis&facet[]=Resource%20Type%3Asoftware%20resource" style="width:90%;padding-right:30px;display:inline-block;border:0" data-count="602" title="software resource"> software resource (602) </a> <div class="pull-right"> <div class="checkbox"> <input type="checkbox" class="facet-checkbox" style="margin-top: 9px" column="Resource%20Type" facet="software%20resource" /> </div> </div> </li> <li style="border-top: 1px solid #ddd"> <a href="https://rrid.site/data/source/nlx_144509-1/search?q=%2A&l=&facet[]=Keywords%3Aanalysis&facet[]=Resource%20Type%3Asoftware%20application" style="width:90%;padding-right:30px;display:inline-block;border:0" data-count="443" title="software application"> software application (443) </a> <div class="pull-right"> <div class="checkbox"> <input type="checkbox" class="facet-checkbox" style="margin-top: 9px" column="Resource%20Type" facet="software%20application" /> </div> </div> </li> <li style="border-top: 1px solid #ddd"> <a href="https://rrid.site/data/source/nlx_144509-1/search?q=%2A&l=&facet[]=Keywords%3Aanalysis&facet[]=Resource%20Type%3Adata%20processing%20software" style="width:90%;padding-right:30px;display:inline-block;border:0" data-count="412" title="data processing software"> data processing soft... 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Register it with the聽SciCrunch Registry.聽An RRID will be generated in 1-2 business day.</button></a> </h4> </div> </div> <div class="cant-find-rrid-bottom"> <div class="open"> Can't find the RRID you're searching for? <span class="close-button">X</span> </div> <div class="closed"> </div> </div> </div> <script> $(function() { $(".cant-find-rrid-bottom .open .close-button").on("click", function(event) { $(this).parent().parent().find(".open").hide(); $(this).parent().parent().find(".closed").show(); event.stopPropagation(); }); $(".cant-find-rrid-bottom .closed").on("click", function() { }); $(".cant-find-rrid-bottom .open").on("click", function() { $("html, body").animate({scrollTop: $("#cant-find-rrid").offset().top}, 500); }); $(".cant-find-rrid-bottom").on("click", function() { if($(this).find(".open").is(":visible")) { $("html, body").animate({scrollTop: $("#cant-find-rrid").offset().top}, 500); } else { $(this).find(".open").show(); $(this).find(".close").hide(); } }); }) </script> </div> </div> <div class="row"> <div class="col-md-9"> <div class="panel panel-default"> <div class="panel-heading" style="text-align: center; font-size: 14px">Click the <i class="fa fa-square-o" aria-hidden="true"></i> to add this resource to a Collection</div> </div> </div> </div> <div class="inner-results"> <div class="the-title"> <ul class="list-inline up-ul" style="margin:7px 0"> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> <i title="Log In to Use Collections" class="icon-sm fa fa-square-o btn-login" style="cursor:pointer"></i> </span> </li> <h3 style="display:inline-block; text-transform:none"> <div><a href="https://rrid.site/data/record/nlx_144509-1/SCR_003874/resolver?q=%2A&l=&facet[]=Keywords%3Aanalysis&i=rrid:scr_003874">Pharmacological Imaging and Pattern Recognition toolbox <i class="fa fa-file-o"></i></a></div> </h3> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> </span> </li> <h4> RRID:SCR_003874 </h4> </ul> </div> <!-- --> <p><a target="_blank" href="http://www.kcl.ac.uk/ioppn/depts/neuroimaging/research/imaginganalysis/Software/PIPR.aspx">http://www.kcl.ac.uk/ioppn/depts/neuroimaging/research/imaginganalysis/Software/PIPR.aspx <i class='fa fa-external-link'></i></a></p> <p>Software toolbox designed to provide machine learning methods for pre-processed imaging data allowing for two (or more) class classification in the context of drug development. The Toolbox includes implementations of Gaussian Process Classification, Support Vector Machines, Ordinal Regression and Sparse Multinomial Logistic Regression for fMRI, Structural and ASL imaging data.</p> <p></p> <p> <strong>Proper citation:</strong> Pharmacological Imaging and Pattern Recognition toolbox (RRID:SCR_003874) <a href="javascript:void(0)" onclick="copyTextToClipboard('Pharmacological Imaging and Pattern Recognition toolbox (RRID:SCR_003874)', 'rrid:scr_003874')"> <i class="fa fa-clipboard"></i> Copy </a>&nbsp;&nbsp; <span id="rrid:scr_003874" class="copy-alert" style="text-align: center; width:120px; display:none"></span> </p> <ul class="list-inline up-ul"> <li> <i class="fa fa-info"></i> &nbsp;&nbsp;Source: <a href='https://rrid.site/rin/sources/SCR_005400' target='_blank'>SciCrunch Registry</a> </li> </ul> </div> <hr/> <div class="inner-results"> <div class="the-title"> <ul class="list-inline up-ul" style="margin:7px 0"> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> <i title="Log In to Use Collections" class="icon-sm fa fa-square-o btn-login" style="cursor:pointer"></i> </span> </li> <h3 style="display:inline-block; text-transform:none"> <div><a href="https://rrid.site/data/record/nlx_144509-1/SCR_008350/resolver?q=%2A&l=&facet[]=Keywords%3Aanalysis&i=rrid:scr_008350">Genetic Analysis Workshop <i class="fa fa-file-o"></i></a></div> </h3> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> </span> </li> <h4> RRID:SCR_008350 </h4> <span class="fa-stack fa-md"> <i class="fa fa-circle fa-stack-2x" style="color:#666767"></i> <i class="fa fa-line-chart fa-stack-1x fa-inverse"></i> </span> This resource has 10+ mentions. <a target="_self" href="/php/download-rin-rrid-mentions.php?viewid=nlx_144509-1&rrid=RRID:SCR_008350&tab=mentions&mode=all"><i class="fa fa-download" title="Download Mentions"></i></a> <span class="help-tooltip" data-name="mention-definition.html"></span> <!-- This resource was mentioned 19 times --> </ul> </div> <!-- --> <p><a target="_blank" href="http://www.gaworkshop.org/">http://www.gaworkshop.org/ <i class='fa fa-external-link'></i></a></p> <p>The Genetic Analysis Workshops (GAWs) are a collaborative effort among genetic epidemiologists to evaluate and compare statistical genetic methods. For each GAW, topics are chosen that are relevant to current analytical problems in genetic epidemiology, and sets of real or computer-simulated data are distributed to investigators worldwide. Results of analyses are discussed and compared at meetings held in even-numbered years. The GAWs began in 1982 were initially motivated by the development and publication of several new algorithms for statistical genetic analysis, as well as by reports in the literature in which different investigators, using different methods of analysis, had reached contradictory conclusions. The impetus was initially to determine the numerical accuracy of the algorithms, to examine the robustness of the methodologies to violations of assumptions, and finally, to compare the range of conclusions that could be drawn from a single set of data. The Workshops have evolved to include consideration of problems related to analyses of specific complex traits, but the focus has always been on analytical methods. The Workshops provide an opportunity for participants to interact in addressing methodological issues, to test novel methods on the same well-characterized data sets, to compare results and interpretations, and to discuss current problems in genetic analysis. The Workshop discussions are a forum for investigators who are evolving new methods of analysis as well as for those who wish to gain further experience with existing methods. The success of the Workshops is due at least in part to the focus on specific problems and data sets, the informality of sessions, and the requirement that everyone who attends must have made a contribution. Topics are chosen and a small group of organizers is selected by the GAW Advisory Committee. Data sets are assembled, and six or seven months before each GAW, a memo is sent to individuals on the GAW mailing list announcing the availability of the GAW data. Included with the memo is a short description of the data sets and a form for requesting data. The form contains a statement to be signed by any investigator requesting the data, acknowledging that the data are confidential and agreeing not to use them for any purpose other than the Genetic Analysis Workshop without written permission from the data provider(s). Data are distributed by the ftp or CD-ROM or, most recently, on the web, together with a more complete written description of the data sets. Investigators who wish to participate in GAW submit written contributions approximately 6-8 weeks before the Workshop. The GAW Advisory Committee reviews contributions for relevance to the GAW topics. Contributions are assembled and distributed to all participants approximately two weeks before the Workshop. Participation in the GAWs is limited to investigators who (1) submit results of their analyses for presentation at the Workshop, or (2) are data providers, invited speakers or discussants, or Workshop organizers. GAWs are held just before the meetings of the American Society of Human Genetics or the International Genetic Epidemiology Society, at a meeting site nearby. We choose a location that will encourage interaction among participants and permit an intense period of concentrated work. The proceedings of each GAW are published. Proceedings from GAW16 were published in part by Genetic Epidemiology 33(Suppl 1), S1-S110 (2009) and in part by Biomed Central (BMC Proceedings, Volume 3, Supplement 7, 2009). Sponsors: GAW is funded by the Southwest Foundation for Biomedical Research.</p> <p></p> <p> <strong>Proper citation:</strong> Genetic Analysis Workshop (RRID:SCR_008350) <a href="javascript:void(0)" onclick="copyTextToClipboard('Genetic Analysis Workshop (RRID:SCR_008350)', 'rrid:scr_008350')"> <i class="fa fa-clipboard"></i> Copy </a>&nbsp;&nbsp; <span id="rrid:scr_008350" class="copy-alert" style="text-align: center; width:120px; display:none"></span> </p> <ul class="list-inline up-ul"> <li> <i class="fa fa-info"></i> &nbsp;&nbsp;Source: <a href='https://rrid.site/rin/sources/SCR_005400' target='_blank'>SciCrunch Registry</a> </li> </ul> </div> <hr/> <div class="inner-results"> <div class="the-title"> <ul class="list-inline up-ul" style="margin:7px 0"> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> <i title="Log In to Use Collections" class="icon-sm fa fa-square-o btn-login" style="cursor:pointer"></i> </span> </li> <h3 style="display:inline-block; text-transform:none"> <div><a href="https://rrid.site/data/record/nlx_144509-1/SCR_002926/resolver?q=%2A&l=&facet[]=Keywords%3Aanalysis&i=rrid:scr_002926">Advanced Neuroscience Imaging Research Laboratory Software Packages <i class="fa fa-file-o"></i></a></div> </h3> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> </span> </li> <h4> RRID:SCR_002926 </h4> <span class="fa-stack fa-md"> <i class="fa fa-circle fa-stack-2x" style="color:#666767"></i> <i class="fa fa-line-chart fa-stack-1x fa-inverse"></i> </span> This resource has 10+ mentions. <a target="_self" href="/php/download-rin-rrid-mentions.php?viewid=nlx_144509-1&rrid=RRID:SCR_002926&tab=mentions&mode=all"><i class="fa fa-download" title="Download Mentions"></i></a> <span class="help-tooltip" data-name="mention-definition.html"></span> <!-- This resource was mentioned 35 times --> </ul> </div> <!-- --> <p><a target="_blank" href="http://www.fmri.wfubmc.edu/cms/software">http://www.fmri.wfubmc.edu/cms/software <i class='fa fa-external-link'></i></a></p> <p>Research group based in the Department of Radiology of Wake Forest University School of Medicine devoted to the application of novel image analysis methods to research studies. The ANSIR lab also maintains a fully-automated functional and structural image processing pipeline supporting the image storage and analysis needs of a variety of scientists and imaging studies at Wake Forest. Software packages and toolkits are currently available for download from the ANSIR Laboratory, including: WFU Biological Parametric Mapping Toolbox, WFU_PickAtlas, and Adaptive Staircase Procedure for E-Prime.</p> <p></p> <p> <strong>Proper citation:</strong> Advanced Neuroscience Imaging Research Laboratory Software Packages (RRID:SCR_002926) <a href="javascript:void(0)" onclick="copyTextToClipboard('Advanced Neuroscience Imaging Research Laboratory Software Packages (RRID:SCR_002926)', 'rrid:scr_002926')"> <i class="fa fa-clipboard"></i> Copy </a>&nbsp;&nbsp; <span id="rrid:scr_002926" class="copy-alert" style="text-align: center; width:120px; display:none"></span> </p> <ul class="list-inline up-ul"> <li> <i class="fa fa-info"></i> &nbsp;&nbsp;Source: <a href='https://rrid.site/rin/sources/SCR_005400' target='_blank'>SciCrunch Registry</a> </li> </ul> </div> <hr/> <div class="inner-results"> <div class="the-title"> <ul class="list-inline up-ul" style="margin:7px 0"> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> <i title="Log In to Use Collections" class="icon-sm fa fa-square-o btn-login" style="cursor:pointer"></i> </span> </li> <h3 style="display:inline-block; text-transform:none"> <div><a href="https://rrid.site/data/record/nlx_144509-1/SCR_006417/resolver?q=%2A&l=&facet[]=Keywords%3Aanalysis&i=rrid:scr_006417">ALEA <i class="fa fa-file-o"></i></a></div> </h3> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> </span> </li> <h4> RRID:SCR_006417 </h4> <span class="fa-stack fa-md"> <i class="fa fa-circle fa-stack-2x" style="color:#666767"></i> <i class="fa fa-line-chart fa-stack-1x fa-inverse"></i> </span> This resource has 50+ mentions. <a target="_self" href="/php/download-rin-rrid-mentions.php?viewid=nlx_144509-1&rrid=RRID:SCR_006417&tab=mentions&mode=all"><i class="fa fa-download" title="Download Mentions"></i></a> <span class="help-tooltip" data-name="mention-definition.html"></span> <!-- This resource was mentioned 90 times --> </ul> </div> <!-- --> <p><a target="_blank" href="http://www.bcgsc.ca/platform/bioinfo/software/alea">http://www.bcgsc.ca/platform/bioinfo/software/alea <i class='fa fa-external-link'></i></a></p> <p>A computational software toolbox for allele-specific (AS) epigenomics analysis. It incorporates allelic variation data within existing resources, allowing for the identification of significant associations between epigenetic modifications and specific allelic variants in human and mouse cells. It provides a customizable pipeline of command line tools for AS analysis of next-generation sequencing data (ChIP-seq, RNA-seq, etc.) that takes the raw sequencing data and produces separate allelic tracks ready to be viewed on genome browsers. ALEA takes advantage of the available genomic resources for human (The 1000 Genomes Project Consortium) and mouse (The Mouse Genome Project) to reconstruct diploid in-silico genomes for human or hybrid mice under study. Then, for each accompanying ChIP-seq or RNA-seq dataset, it generates two Wiggle track format (WIG) files from short reads aligned differentially to each haplotype.</p> <p></p> <p> <strong>Proper citation:</strong> ALEA (RRID:SCR_006417) <a href="javascript:void(0)" onclick="copyTextToClipboard('ALEA (RRID:SCR_006417)', 'rrid:scr_006417')"> <i class="fa fa-clipboard"></i> Copy </a>&nbsp;&nbsp; <span id="rrid:scr_006417" class="copy-alert" style="text-align: center; width:120px; display:none"></span> </p> <ul class="list-inline up-ul"> <li> <i class="fa fa-info"></i> &nbsp;&nbsp;Source: <a href='https://rrid.site/rin/sources/SCR_005400' target='_blank'>SciCrunch Registry</a> </li> </ul> </div> <hr/> <div class="inner-results"> <div class="the-title"> <ul class="list-inline up-ul" style="margin:7px 0"> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> <i title="Log In to Use Collections" class="icon-sm fa fa-square-o btn-login" style="cursor:pointer"></i> </span> </li> <h3 style="display:inline-block; text-transform:none"> <div><a href="https://rrid.site/data/record/nlx_144509-1/SCR_006390/resolver?q=%2A&l=&facet[]=Keywords%3Aanalysis&i=rrid:scr_006390">Computational Genomics Analysis Tools <i class="fa fa-file-o"></i></a></div> </h3> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> </span> </li> <h4> RRID:SCR_006390 </h4> <span class="fa-stack fa-md"> <i class="fa fa-circle fa-stack-2x" style="color:#666767"></i> <i class="fa fa-line-chart fa-stack-1x fa-inverse"></i> </span> This resource has 10+ mentions. <a target="_self" href="/php/download-rin-rrid-mentions.php?viewid=nlx_144509-1&rrid=RRID:SCR_006390&tab=mentions&mode=all"><i class="fa fa-download" title="Download Mentions"></i></a> <span class="help-tooltip" data-name="mention-definition.html"></span> <!-- This resource was mentioned 25 times --> </ul> </div> <!-- --> <p><a target="_blank" href="http://www.cgat.org/~andreas/documentation/cgat/cgat.html">http://www.cgat.org/~andreas/documentation/cgat/cgat.html <i class='fa fa-external-link'></i></a></p> <p>THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 3, 2023. A collection of tools for the computational genomicist written in the python language to assist in the analysis of genome scale data from a range of standard file formats. The toolkit enables filtering, comparison, conversion, summarization and annotation of genomic intervals, gene sets and sequences. The tools can both be run from the Unix command line and installed into visual workflow builders, such as Galaxy. Please note that the tools are part of a larger code base also including genomics and NGS pipelines. Everyone who uses parts of the CGAT code collection is encouraged to contribute. Contributions can take many forms: bugreports, bugfixes, new scripts and pipelines, documentation, tests, etc. All contributions are welcome.</p> <p></p> <p> <strong>Proper citation:</strong> Computational Genomics Analysis Tools (RRID:SCR_006390) <a href="javascript:void(0)" onclick="copyTextToClipboard('Computational Genomics Analysis Tools (RRID:SCR_006390)', 'rrid:scr_006390')"> <i class="fa fa-clipboard"></i> Copy </a>&nbsp;&nbsp; <span id="rrid:scr_006390" class="copy-alert" style="text-align: center; width:120px; display:none"></span> </p> <ul class="list-inline up-ul"> <li> <i class="fa fa-info"></i> &nbsp;&nbsp;Source: <a href='https://rrid.site/rin/sources/SCR_005400' target='_blank'>SciCrunch Registry</a> </li> </ul> </div> <hr/> <div class="inner-results"> <div class="the-title"> <ul class="list-inline up-ul" style="margin:7px 0"> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> <i title="Log In to Use Collections" class="icon-sm fa fa-square-o btn-login" style="cursor:pointer"></i> </span> </li> <h3 style="display:inline-block; text-transform:none"> <div><a href="https://rrid.site/data/record/nlx_144509-1/SCR_018143/resolver?q=%2A&l=&facet[]=Keywords%3Aanalysis&i=rrid:scr_018143">sleipner <i class="fa fa-file-o"></i></a></div> </h3> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> </span> </li> <h4> RRID:SCR_018143 </h4> <span class="fa-stack fa-md"> <i class="fa fa-circle fa-stack-2x" style="color:#666767"></i> <i class="fa fa-line-chart fa-stack-1x fa-inverse"></i> </span> This resource has 1+ mentions. <a target="_self" href="/php/download-rin-rrid-mentions.php?viewid=nlx_144509-1&rrid=RRID:SCR_018143&tab=mentions&mode=all"><i class="fa fa-download" title="Download Mentions"></i></a> <span class="help-tooltip" data-name="mention-definition.html"></span> <!-- This resource was mentioned 2 times --> </ul> </div> <!-- --> <p><a target="_blank" href="https://w3.psychology.su.se/sleipner/">https://w3.psychology.su.se/sleipner/ <i class='fa fa-external-link'></i></a></p> <p>Software package as collection of modules implementing methods of analysis that form self-contained and empirically grounded toolbox for handling longitudinal data within person oriented paradigm.</p> <p></p> <p> <strong>Proper citation:</strong> sleipner (RRID:SCR_018143) <a href="javascript:void(0)" onclick="copyTextToClipboard('sleipner (RRID:SCR_018143)', 'rrid:scr_018143')"> <i class="fa fa-clipboard"></i> Copy </a>&nbsp;&nbsp; <span id="rrid:scr_018143" class="copy-alert" style="text-align: center; width:120px; display:none"></span> </p> <ul class="list-inline up-ul"> <li> <i class="fa fa-info"></i> &nbsp;&nbsp;Source: <a href='https://rrid.site/rin/sources/SCR_005400' target='_blank'>SciCrunch Registry</a> </li> </ul> </div> <hr/> <div class="inner-results"> <div class="the-title"> <ul class="list-inline up-ul" style="margin:7px 0"> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> <i title="Log In to Use Collections" class="icon-sm fa fa-square-o btn-login" style="cursor:pointer"></i> </span> </li> <h3 style="display:inline-block; text-transform:none"> <div><a href="https://rrid.site/data/record/nlx_144509-1/SCR_019055/resolver?q=%2A&l=&facet[]=Keywords%3Aanalysis&i=rrid:scr_019055">meta <i class="fa fa-file-o"></i></a></div> </h3> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> </span> </li> <h4> RRID:SCR_019055 </h4> <span class="fa-stack fa-md"> <i class="fa fa-circle fa-stack-2x" style="color:#666767"></i> <i class="fa fa-line-chart fa-stack-1x fa-inverse"></i> </span> This resource has 50+ mentions. <a target="_self" href="/php/download-rin-rrid-mentions.php?viewid=nlx_144509-1&rrid=RRID:SCR_019055&tab=mentions&mode=all"><i class="fa fa-download" title="Download Mentions"></i></a> <span class="help-tooltip" data-name="mention-definition.html"></span> <!-- This resource was mentioned 56 times --> </ul> </div> <!-- --> <p><a target="_blank" href="https://CRAN.R-project.org/package=meta">https://CRAN.R-project.org/package=meta <i class='fa fa-external-link'></i></a></p> <p>Software general R package providing standard methods for meta analysis.</p> <p></p> <p> <strong>Proper citation:</strong> meta (RRID:SCR_019055) <a href="javascript:void(0)" onclick="copyTextToClipboard('meta (RRID:SCR_019055)', 'rrid:scr_019055')"> <i class="fa fa-clipboard"></i> Copy </a>&nbsp;&nbsp; <span id="rrid:scr_019055" class="copy-alert" style="text-align: center; width:120px; display:none"></span> </p> <ul class="list-inline up-ul"> <li> <i class="fa fa-info"></i> &nbsp;&nbsp;Source: <a href='https://rrid.site/rin/sources/SCR_005400' target='_blank'>SciCrunch Registry</a> </li> </ul> </div> <hr/> <div class="inner-results"> <div class="the-title"> <ul class="list-inline up-ul" style="margin:7px 0"> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> <i title="Log In to Use Collections" class="icon-sm fa fa-square-o btn-login" style="cursor:pointer"></i> </span> </li> <h3 style="display:inline-block; text-transform:none"> <div><a href="https://rrid.site/data/record/nlx_144509-1/SCR_021946/resolver?q=%2A&l=&facet[]=Keywords%3Aanalysis&i=rrid:scr_021946">CellChat <i class="fa fa-file-o"></i></a></div> </h3> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> </span> </li> <h4> RRID:SCR_021946 </h4> <span class="fa-stack fa-md"> <i class="fa fa-circle fa-stack-2x" style="color:#666767"></i> <i class="fa fa-line-chart fa-stack-1x fa-inverse"></i> </span> This resource has 100+ mentions. <a target="_self" href="/php/download-rin-rrid-mentions.php?viewid=nlx_144509-1&rrid=RRID:SCR_021946&tab=mentions&mode=all"><i class="fa fa-download" title="Download Mentions"></i></a> <span class="help-tooltip" data-name="mention-definition.html"></span> <!-- This resource was mentioned 238 times --> </ul> </div> <!-- --> <p><a target="_blank" href="https://github.com/sqjin/CellChat">https://github.com/sqjin/CellChat <i class='fa fa-external-link'></i></a></p> <p>Software R toolkit for inference, visualization and analysis of cell-cell communication from single cell data.Quantitatively infers and analyzes intercellular communication networks from single-cell RNA-sequencing data. Predicts major signaling inputs and outputs for cells and how those cells and signals coordinate for functions using network analysis and pattern recognition approaches. Classifies signaling pathways and delineates conserved and context specific pathways across different datasets.</p> <p></p> <p> <strong>Proper citation:</strong> CellChat (RRID:SCR_021946) <a href="javascript:void(0)" onclick="copyTextToClipboard('CellChat (RRID:SCR_021946)', 'rrid:scr_021946')"> <i class="fa fa-clipboard"></i> Copy </a>&nbsp;&nbsp; <span id="rrid:scr_021946" class="copy-alert" style="text-align: center; width:120px; display:none"></span> </p> <ul class="list-inline up-ul"> <li> <i class="fa fa-info"></i> &nbsp;&nbsp;Source: <a href='https://rrid.site/rin/sources/SCR_005400' target='_blank'>SciCrunch Registry</a> </li> </ul> </div> <hr/> <div class="inner-results"> <div class="the-title"> <ul class="list-inline up-ul" style="margin:7px 0"> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> <i title="Log In to Use Collections" class="icon-sm fa fa-square-o btn-login" style="cursor:pointer"></i> </span> </li> <h3 style="display:inline-block; text-transform:none"> <div><a href="https://rrid.site/data/record/nlx_144509-1/SCR_006770/resolver?q=%2A&l=&facet[]=Keywords%3Aanalysis&i=rrid:scr_006770">BRAIN Initiative <i class="fa fa-file-o"></i></a></div> </h3> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> </span> </li> <h4> RRID:SCR_006770 </h4> <span class="fa-stack fa-md"> <i class="fa fa-circle fa-stack-2x" style="color:#666767"></i> <i class="fa fa-line-chart fa-stack-1x fa-inverse"></i> </span> This resource has 10+ mentions. <a target="_self" href="/php/download-rin-rrid-mentions.php?viewid=nlx_144509-1&rrid=RRID:SCR_006770&tab=mentions&mode=all"><i class="fa fa-download" title="Download Mentions"></i></a> <span class="help-tooltip" data-name="mention-definition.html"></span> <!-- This resource was mentioned 14 times --> </ul> </div> <!-- --> <p><a target="_blank" href="http://www.nih.gov/science/brain/">http://www.nih.gov/science/brain/ <i class='fa fa-external-link'></i></a></p> <p>Project aimed at revolutionizing understanding of human brain, to show how individual cells and complex neural circuits interact, enable rapid progress in development of new technologies and data analysis tools to treat and prevent brain disorders. BRAIN Initiative encourages collaborations between neurobiologists and scientists from disciplines such as statistics, physics, mathematics, engineering, and computer and information sciences. Institutes and centers contributing to NIH BRAIN Initiative support those research efforts.</p> <p></p> <p> <strong>Proper citation:</strong> BRAIN Initiative (RRID:SCR_006770) <a href="javascript:void(0)" onclick="copyTextToClipboard('BRAIN Initiative (RRID:SCR_006770)', 'rrid:scr_006770')"> <i class="fa fa-clipboard"></i> Copy </a>&nbsp;&nbsp; <span id="rrid:scr_006770" class="copy-alert" style="text-align: center; width:120px; display:none"></span> </p> <ul class="list-inline up-ul"> <li> <i class="fa fa-info"></i> &nbsp;&nbsp;Source: <a href='https://rrid.site/rin/sources/SCR_005400' target='_blank'>SciCrunch Registry</a> </li> </ul> </div> <hr/> <div class="inner-results"> <div class="the-title"> <ul class="list-inline up-ul" style="margin:7px 0"> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> <i title="Log In to Use Collections" class="icon-sm fa fa-square-o btn-login" style="cursor:pointer"></i> </span> </li> <h3 style="display:inline-block; text-transform:none"> <div><a href="https://rrid.site/data/record/nlx_144509-1/SCR_004694/resolver?q=%2A&l=&facet[]=Keywords%3Aanalysis&i=rrid:scr_004694">SGD <i class="fa fa-file-o"></i></a></div> </h3> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> </span> </li> <h4> RRID:SCR_004694 </h4> <span class="fa-stack fa-md"> <i class="fa fa-circle fa-stack-2x" style="color:#666767"></i> <i class="fa fa-line-chart fa-stack-1x fa-inverse"></i> </span> This resource has 1000+ mentions. <a target="_self" href="/php/download-rin-rrid-mentions.php?viewid=nlx_144509-1&rrid=RRID:SCR_004694&tab=mentions&mode=all"><i class="fa fa-download" title="Download Mentions"></i></a> <span class="help-tooltip" data-name="mention-definition.html"></span> <!-- This resource was mentioned 1874 times --> </ul> </div> <!-- --> <p><a target="_blank" href="http://www.yeastgenome.org/">http://www.yeastgenome.org/ <i class='fa fa-external-link'></i></a></p> <p>A curated database that provides comprehensive integrated biological information for Saccharomyces cerevisiae along with search and analysis tools to explore these data. SGD allows researchers to discover functional relationships between sequence and gene products in fungi and higher organisms. The SGD also maintains the S. cerevisiae Gene Name Registry, a complete list of all gene names used in S. cerevisiae which includes a set of general guidelines to gene naming. Protein Page provides basic protein information calculated from the predicted sequence and contains links to a variety of secondary structure and tertiary structure resources. Yeast Biochemical Pathways allows users to view and search for biochemical reactions and pathways that occur in S. cerevisiae as well as map expression data onto the biochemical pathways. Literature citations are provided where available.</p> <p></p> <p> <strong>Proper citation:</strong> SGD (RRID:SCR_004694) <a href="javascript:void(0)" onclick="copyTextToClipboard('SGD (RRID:SCR_004694)', 'rrid:scr_004694')"> <i class="fa fa-clipboard"></i> Copy </a>&nbsp;&nbsp; <span id="rrid:scr_004694" class="copy-alert" style="text-align: center; width:120px; display:none"></span> </p> <ul class="list-inline up-ul"> <li> <i class="fa fa-info"></i> &nbsp;&nbsp;Source: <a href='https://rrid.site/rin/sources/SCR_005400' target='_blank'>SciCrunch Registry</a> </li> </ul> </div> <hr/> <div class="inner-results"> <div class="the-title"> <ul class="list-inline up-ul" style="margin:7px 0"> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> <i title="Log In to Use Collections" class="icon-sm fa fa-square-o btn-login" style="cursor:pointer"></i> </span> </li> <h3 style="display:inline-block; text-transform:none"> <div><a href="https://rrid.site/data/record/nlx_144509-1/SCR_021626/resolver?q=%2A&l=&facet[]=Keywords%3Aanalysis&i=rrid:scr_021626">Kidney Tissue Atlas <i class="fa fa-file-o"></i></a></div> </h3> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> </span> </li> <h4> RRID:SCR_021626 </h4> <span class="fa-stack fa-md"> <i class="fa fa-circle fa-stack-2x" style="color:#666767"></i> <i class="fa fa-line-chart fa-stack-1x fa-inverse"></i> </span> This resource has 10+ mentions. <a target="_self" href="/php/download-rin-rrid-mentions.php?viewid=nlx_144509-1&rrid=RRID:SCR_021626&tab=mentions&mode=all"><i class="fa fa-download" title="Download Mentions"></i></a> <span class="help-tooltip" data-name="mention-definition.html"></span> <!-- This resource was mentioned 10 times --> </ul> </div> <!-- --> <p><a target="_blank" href="https://atlas.kpmp.org/">https://atlas.kpmp.org/ <i class='fa fa-external-link'></i></a></p> <p>Atlas is set of interactive tools built to promote retrieval, exploration, discovery, and analysis of Kidney Precision Medicine Project data by greater research community. Datasets available in repository are combination of raw and processed data from KPMP participant biopsies and reference tissue samples.</p> <p></p> <p> <strong>Proper citation:</strong> Kidney Tissue Atlas (RRID:SCR_021626) <a href="javascript:void(0)" onclick="copyTextToClipboard('Kidney Tissue Atlas (RRID:SCR_021626)', 'rrid:scr_021626')"> <i class="fa fa-clipboard"></i> Copy </a>&nbsp;&nbsp; <span id="rrid:scr_021626" class="copy-alert" style="text-align: center; width:120px; display:none"></span> </p> <ul class="list-inline up-ul"> <li> <i class="fa fa-info"></i> &nbsp;&nbsp;Source: <a href='https://rrid.site/rin/sources/SCR_005400' target='_blank'>SciCrunch Registry</a> </li> </ul> </div> <hr/> <div class="inner-results"> <div class="the-title"> <ul class="list-inline up-ul" style="margin:7px 0"> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> <i title="Log In to Use Collections" class="icon-sm fa fa-square-o btn-login" style="cursor:pointer"></i> </span> </li> <h3 style="display:inline-block; text-transform:none"> <div><a href="https://rrid.site/data/record/nlx_144509-1/SCR_017064/resolver?q=%2A&l=&facet[]=Keywords%3Aanalysis&i=rrid:scr_017064">C. elegans RNAi Collection (Ahringer) <i class="fa fa-file-o"></i></a></div> </h3> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> </span> </li> <h4> RRID:SCR_017064 </h4> <span class="fa-stack fa-md"> <i class="fa fa-circle fa-stack-2x" style="color:#666767"></i> <i class="fa fa-line-chart fa-stack-1x fa-inverse"></i> </span> This resource has 10+ mentions. <a target="_self" href="/php/download-rin-rrid-mentions.php?viewid=nlx_144509-1&rrid=RRID:SCR_017064&tab=mentions&mode=all"><i class="fa fa-download" title="Download Mentions"></i></a> <span class="help-tooltip" data-name="mention-definition.html"></span> <!-- This resource was mentioned 13 times --> </ul> </div> <!-- --> <p><a target="_blank" href="https://www.sourcebioscience.com/products/life-sciences-research/clones/rnai-resources/c-elegans-rnai-collection-ahringer/">https://www.sourcebioscience.com/products/life-sciences-research/clones/rnai-resources/c-elegans-rnai-collection-ahringer/ <i class='fa fa-external-link'></i></a></p> <p>C. elegans RNAi feeding library distributed by Source BioScience Ltd. Designed for genome wide study of gene function in C. elegans through loss of function studies.</p> <p></p> <p> <strong>Proper citation:</strong> C. elegans RNAi Collection (Ahringer) (RRID:SCR_017064) <a href="javascript:void(0)" onclick="copyTextToClipboard('C. elegans RNAi Collection (Ahringer) (RRID:SCR_017064)', 'rrid:scr_017064')"> <i class="fa fa-clipboard"></i> Copy </a>&nbsp;&nbsp; <span id="rrid:scr_017064" class="copy-alert" style="text-align: center; width:120px; display:none"></span> </p> <ul class="list-inline up-ul"> <li> <i class="fa fa-info"></i> &nbsp;&nbsp;Source: <a href='https://rrid.site/rin/sources/SCR_005400' target='_blank'>SciCrunch Registry</a> </li> </ul> </div> <hr/> <div class="inner-results"> <div class="the-title"> <ul class="list-inline up-ul" style="margin:7px 0"> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> <i title="Log In to Use Collections" class="icon-sm fa fa-square-o btn-login" style="cursor:pointer"></i> </span> </li> <h3 style="display:inline-block; text-transform:none"> <div><a href="https://rrid.site/data/record/nlx_144509-1/SCR_018002/resolver?q=%2A&l=&facet[]=Keywords%3Aanalysis&i=rrid:scr_018002">mqtldb <i class="fa fa-file-o"></i></a></div> </h3> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> </span> </li> <h4> RRID:SCR_018002 </h4> <span class="fa-stack fa-md"> <i class="fa fa-circle fa-stack-2x" style="color:#666767"></i> <i class="fa fa-line-chart fa-stack-1x fa-inverse"></i> </span> This resource has 10+ mentions. <a target="_self" href="/php/download-rin-rrid-mentions.php?viewid=nlx_144509-1&rrid=RRID:SCR_018002&tab=mentions&mode=all"><i class="fa fa-download" title="Download Mentions"></i></a> <span class="help-tooltip" data-name="mention-definition.html"></span> <!-- This resource was mentioned 30 times --> </ul> </div> <!-- --> <p><a target="_blank" href="http://www.mqtldb.org/">http://www.mqtldb.org/ <i class='fa fa-external-link'></i></a></p> <p>Data collection of large scale genome wide DNA methylation analysis of 1,000 mother-child pairs at serial time points across life course (ARIES).</p> <p></p> <p> <strong>Proper citation:</strong> mqtldb (RRID:SCR_018002) <a href="javascript:void(0)" onclick="copyTextToClipboard('mqtldb (RRID:SCR_018002)', 'rrid:scr_018002')"> <i class="fa fa-clipboard"></i> Copy </a>&nbsp;&nbsp; <span id="rrid:scr_018002" class="copy-alert" style="text-align: center; width:120px; display:none"></span> </p> <ul class="list-inline up-ul"> <li> <i class="fa fa-info"></i> &nbsp;&nbsp;Source: <a href='https://rrid.site/rin/sources/SCR_005400' target='_blank'>SciCrunch Registry</a> </li> </ul> </div> <hr/> <div class="inner-results"> <div class="the-title"> <ul class="list-inline up-ul" style="margin:7px 0"> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> <i title="Log In to Use Collections" class="icon-sm fa fa-square-o btn-login" style="cursor:pointer"></i> </span> </li> <h3 style="display:inline-block; text-transform:none"> <div><a href="https://rrid.site/data/record/nlx_144509-1/SCR_000354/resolver?q=%2A&l=&facet[]=Keywords%3Aanalysis&i=rrid:scr_000354">CLC Main Workbench <i class="fa fa-file-o"></i></a></div> </h3> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> </span> </li> <h4> RRID:SCR_000354 </h4> <span class="fa-stack fa-md"> <i class="fa fa-circle fa-stack-2x" style="color:#666767"></i> <i class="fa fa-line-chart fa-stack-1x fa-inverse"></i> </span> This resource has 10+ mentions. <a target="_self" href="/php/download-rin-rrid-mentions.php?viewid=nlx_144509-1&rrid=RRID:SCR_000354&tab=mentions&mode=all"><i class="fa fa-download" title="Download Mentions"></i></a> <span class="help-tooltip" data-name="mention-definition.html"></span> <!-- This resource was mentioned 28 times --> </ul> </div> <!-- --> <p><a target="_blank" href="http://www.clcbio.com/products/clc-main-workbench/">http://www.clcbio.com/products/clc-main-workbench/ <i class='fa fa-external-link'></i></a></p> <p>A suite of software for DNA, RNA and protein sequence data analysis. The software allows for the analysis and visualization of Sanger sequencing data as well as gene expression analysis, molecular cloning, primer design, phylogenetic analyses, and sequence data management.</p> <p></p> <p> <strong>Proper citation:</strong> CLC Main Workbench (RRID:SCR_000354) <a href="javascript:void(0)" onclick="copyTextToClipboard('CLC Main Workbench (RRID:SCR_000354)', 'rrid:scr_000354')"> <i class="fa fa-clipboard"></i> Copy </a>&nbsp;&nbsp; <span id="rrid:scr_000354" class="copy-alert" style="text-align: center; width:120px; display:none"></span> </p> <ul class="list-inline up-ul"> <li> <i class="fa fa-info"></i> &nbsp;&nbsp;Source: <a href='https://rrid.site/rin/sources/SCR_005400' target='_blank'>SciCrunch Registry</a> </li> </ul> </div> <hr/> <div class="inner-results"> <div class="the-title"> <ul class="list-inline up-ul" style="margin:7px 0"> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> <i title="Log In to Use Collections" class="icon-sm fa fa-square-o btn-login" style="cursor:pointer"></i> </span> </li> <h3 style="display:inline-block; text-transform:none"> <div><a href="https://rrid.site/data/record/nlx_144509-1/SCR_000192/resolver?q=%2A&l=&facet[]=Keywords%3Aanalysis&i=rrid:scr_000192">Acquisition and Analysis for Electron Tomography <i class="fa fa-file-o"></i></a></div> </h3> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> </span> </li> <h4> RRID:SCR_000192 </h4> </ul> </div> <!-- --> <p><a target="_blank" href="http://www.biochem.mpg.de/en/rd/baumeister/research/ContentCEM/Software_development">http://www.biochem.mpg.de/en/rd/baumeister/research/ContentCEM/Software_development <i class='fa fa-external-link'></i></a></p> <p>A software platform for low dose electron tomography (ET) for all processing steps: acquisition, alignment, reconstruction, and analysis. Requires: Matlab R2008a and Image Processing Toolbox (V6.1)</p> <p></p> <p> <strong>Proper citation:</strong> Acquisition and Analysis for Electron Tomography (RRID:SCR_000192) <a href="javascript:void(0)" onclick="copyTextToClipboard('Acquisition and Analysis for Electron Tomography (RRID:SCR_000192)', 'rrid:scr_000192')"> <i class="fa fa-clipboard"></i> Copy </a>&nbsp;&nbsp; <span id="rrid:scr_000192" class="copy-alert" style="text-align: center; width:120px; display:none"></span> </p> <ul class="list-inline up-ul"> <li> <i class="fa fa-info"></i> &nbsp;&nbsp;Source: <a href='https://rrid.site/rin/sources/SCR_005400' target='_blank'>SciCrunch Registry</a> </li> </ul> </div> <hr/> <div class="inner-results"> <div class="the-title"> <ul class="list-inline up-ul" style="margin:7px 0"> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> <i title="Log In to Use Collections" class="icon-sm fa fa-square-o btn-login" style="cursor:pointer"></i> </span> </li> <h3 style="display:inline-block; text-transform:none"> <div><a href="https://rrid.site/data/record/nlx_144509-1/SCR_000086/resolver?q=%2A&l=&facet[]=Keywords%3Aanalysis&i=rrid:scr_000086">RNA STRAND-The RNA secondary STRucture and statistical ANalysis Database <i class="fa fa-file-o"></i></a></div> </h3> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> </span> </li> <h4> RRID:SCR_000086 </h4> </ul> </div> <!-- --> <p><a target="_blank" href="http://www.rnasoft.ca/sstrand">http://www.rnasoft.ca/sstrand <i class='fa fa-external-link'></i></a></p> <p>A scientific community-crowdsourced database containing the RNA secondary structures of known types and organisms. It is meant to provide a simple and powerful way to analyze, search and update a shared repository of information.</p> <p></p> <p> <strong>Proper citation:</strong> RNA STRAND-The RNA secondary STRucture and statistical ANalysis Database (RRID:SCR_000086) <a href="javascript:void(0)" onclick="copyTextToClipboard('RNA STRAND-The RNA secondary STRucture and statistical ANalysis Database (RRID:SCR_000086)', 'rrid:scr_000086')"> <i class="fa fa-clipboard"></i> Copy </a>&nbsp;&nbsp; <span id="rrid:scr_000086" class="copy-alert" style="text-align: center; width:120px; display:none"></span> </p> <ul class="list-inline up-ul"> <li> <i class="fa fa-info"></i> &nbsp;&nbsp;Source: <a href='https://rrid.site/rin/sources/SCR_005400' target='_blank'>SciCrunch Registry</a> </li> </ul> </div> <hr/> <div class="inner-results"> <div class="the-title"> <ul class="list-inline up-ul" style="margin:7px 0"> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> <i title="Log In to Use Collections" class="icon-sm fa fa-square-o btn-login" style="cursor:pointer"></i> </span> </li> <h3 style="display:inline-block; text-transform:none"> <div><a href="https://rrid.site/data/record/nlx_144509-1/SCR_002556/resolver?q=%2A&l=&facet[]=Keywords%3Aanalysis&i=rrid:scr_002556">Bamboo DiRT <i class="fa fa-file-o"></i></a></div> </h3> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> </span> </li> <h4> RRID:SCR_002556 </h4> <span class="fa-stack fa-md"> <i class="fa fa-circle fa-stack-2x" style="color:#666767"></i> <i class="fa fa-line-chart fa-stack-1x fa-inverse"></i> </span> This resource has 1+ mentions. <a target="_self" href="/php/download-rin-rrid-mentions.php?viewid=nlx_144509-1&rrid=RRID:SCR_002556&tab=mentions&mode=all"><i class="fa fa-download" title="Download Mentions"></i></a> <span class="help-tooltip" data-name="mention-definition.html"></span> <!-- This resource was mentioned 1 time. --> </ul> </div> <!-- --> <p><a target="_blank" href="http://dirt.projectbamboo.org/">http://dirt.projectbamboo.org/ <i class='fa fa-external-link'></i></a></p> <p>Registry of digital research tools for scholarly use that makes it easy for digital humanists and others conducting digital research to find and compare resources ranging from content management systems to music OCR, statistical analysis packages to mindmapping software.</p> <p></p> <p> <strong>Proper citation:</strong> Bamboo DiRT (RRID:SCR_002556) <a href="javascript:void(0)" onclick="copyTextToClipboard('Bamboo DiRT (RRID:SCR_002556)', 'rrid:scr_002556')"> <i class="fa fa-clipboard"></i> Copy </a>&nbsp;&nbsp; <span id="rrid:scr_002556" class="copy-alert" style="text-align: center; width:120px; display:none"></span> </p> <ul class="list-inline up-ul"> <li> <i class="fa fa-info"></i> &nbsp;&nbsp;Source: <a href='https://rrid.site/rin/sources/SCR_005400' target='_blank'>SciCrunch Registry</a> </li> </ul> </div> <hr/> <div class="inner-results"> <div class="the-title"> <ul class="list-inline up-ul" style="margin:7px 0"> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> <i title="Log In to Use Collections" class="icon-sm fa fa-square-o btn-login" style="cursor:pointer"></i> </span> </li> <h3 style="display:inline-block; text-transform:none"> <div><a href="https://rrid.site/data/record/nlx_144509-1/SCR_008032/resolver?q=%2A&l=&facet[]=Keywords%3Aanalysis&i=rrid:scr_008032">Electroencephalogram Database: Prediction of Epileptic Seizures <i class="fa fa-file-o"></i></a></div> </h3> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> </span> </li> <h4> RRID:SCR_008032 </h4> </ul> </div> <!-- --> <p><a target="_blank" href="https://epilepsy.uni-freiburg.de/freiburg-seizure-prediction-project">https://epilepsy.uni-freiburg.de/freiburg-seizure-prediction-project <i class='fa fa-external-link'></i></a></p> <p>Electroencephalogram (EEG) data recorded from invasive and scalp electrodes. The EEG database contains invasive EEG recordings of 21 patients suffering from medically intractable focal epilepsy. The data were recorded during an invasive pre-surgical epilepsy monitoring at the Epilepsy Center of the University Hospital of Freiburg, Germany. In eleven patients, the epileptic focus was located in neocortical brain structures, in eight patients in the hippocampus, and in two patients in both. In order to obtain a high signal-to-noise ratio, fewer artifacts, and to record directly from focal areas, intracranial grid-, strip-, and depth-electrodes were utilized. The EEG data were acquired using a Neurofile NT digital video EEG system with 128 channels, 256 Hz sampling rate, and a 16 bit analogue-to-digital converter. Notch or band pass filters have not been applied. For each of the patients, there are datasets called ictal and interictal, the former containing files with epileptic seizures and at least 50 min pre-ictal data. the latter containing approximately 24 hours of EEG-recordings without seizure activity. At least 24 h of continuous interictal recordings are available for 13 patients. For the remaining patients interictal invasive EEG data consisting of less than 24 h were joined together, to end up with at least 24 h per patient. An interdisciplinary project between: * Epilepsy Center, University Hospital Freiburg * Bernstein Center for Computational Neuroscience (BCCN), Freiburg * Freiburg Center for Data Analysis and Modeling (FDM).</p> <p></p> <p> <strong>Proper citation:</strong> Electroencephalogram Database: Prediction of Epileptic Seizures (RRID:SCR_008032) <a href="javascript:void(0)" onclick="copyTextToClipboard('Electroencephalogram Database: Prediction of Epileptic Seizures (RRID:SCR_008032)', 'rrid:scr_008032')"> <i class="fa fa-clipboard"></i> Copy </a>&nbsp;&nbsp; <span id="rrid:scr_008032" class="copy-alert" style="text-align: center; width:120px; display:none"></span> </p> <ul class="list-inline up-ul"> <li> <i class="fa fa-info"></i> &nbsp;&nbsp;Source: <a href='https://rrid.site/rin/sources/SCR_005400' target='_blank'>SciCrunch Registry</a> </li> </ul> </div> <hr/> <div class="inner-results"> <div class="the-title"> <ul class="list-inline up-ul" style="margin:7px 0"> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> <i title="Log In to Use Collections" class="icon-sm fa fa-square-o btn-login" style="cursor:pointer"></i> </span> </li> <h3 style="display:inline-block; text-transform:none"> <div><a href="https://rrid.site/data/record/nlx_144509-1/SCR_008232/resolver?q=%2A&l=&facet[]=Keywords%3Aanalysis&i=rrid:scr_008232">PrimerStudio <i class="fa fa-file-o"></i></a></div> </h3> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> </span> </li> <h4> RRID:SCR_008232 </h4> <span class="fa-stack fa-md"> <i class="fa fa-circle fa-stack-2x" style="color:#666767"></i> <i class="fa fa-line-chart fa-stack-1x fa-inverse"></i> </span> This resource has 1+ mentions. <a target="_self" href="/php/download-rin-rrid-mentions.php?viewid=nlx_144509-1&rrid=RRID:SCR_008232&tab=mentions&mode=all"><i class="fa fa-download" title="Download Mentions"></i></a> <span class="help-tooltip" data-name="mention-definition.html"></span> <!-- This resource was mentioned 1 time. --> </ul> </div> <!-- --> <p><a target="_blank" href="http://www.primervfx.com/#welcome">http://www.primervfx.com/#welcome <i class='fa fa-external-link'></i></a></p> <p>PrimerParadise is an online PCR primer database for genomics studies. The database contains predesigned PCR primers for amplification of exons, genes and SNPs of almost all sequenced genomes. Primers can be used for genome-wide projects (resequencing, mutation analysis, SNP detection etc). The primers for eukaryotic genomes have been tested with e-PCR to make sure that no alternative products will be generated. Also, all eukaryotic primers have been filtered to exclude primers that bind excessively throughout the genome. Genes are amplified as amplicons. Amplicons are defined as only one genes exons containing maximaly 3000 bp long dna segments. If gene is longer than 3000 bp then it is split into the segments at length 3000 bp. So for example gene at length 5000 bp is split into two segment and for both segments there were designed a separate primerpair. If genes exons length is over 3000 bp then it is split into amplicons as well. Every SNP has one primerpair. In addition of considering repetitive sequences and mono-dinucleotide repeats, we avoid designing primers to genome regions which contain other SNPs. -There are two ways to search for primers: you can use features IDs ( for SNP primers Reference ID, for gene/exon primers different IDs (Ensembl gene IDs, HUGO IDs for human genes, LocusLink IDs, RefSeq IDs, MIM IDs, NCBI gene names, SWISSPROT IDs for bacterial genes, VEGA gene IDs for human and mouse, Sanger S.pombe systematic gene names and common gene names, S.cerevisiae GeneBanks Locus, AccNo, GI IDs and common gene names) -you can use genome regions (chromosome coordinates, chromosome bands if exists) -Currently we provide 3 primers collections: proPCR for prokaryotic organisms genes primers -euPCR for eukaryotic organisms genes/exons primers -snpPCR for eukaryotic organisms SNP primers Sponsors: PrimerStudio is funded by the University of Tartu.</p> <p></p> <p> <strong>Proper citation:</strong> PrimerStudio (RRID:SCR_008232) <a href="javascript:void(0)" onclick="copyTextToClipboard('PrimerStudio (RRID:SCR_008232)', 'rrid:scr_008232')"> <i class="fa fa-clipboard"></i> Copy </a>&nbsp;&nbsp; <span id="rrid:scr_008232" class="copy-alert" style="text-align: center; width:120px; display:none"></span> </p> <ul class="list-inline up-ul"> <li> <i class="fa fa-info"></i> &nbsp;&nbsp;Source: <a href='https://rrid.site/rin/sources/SCR_005400' target='_blank'>SciCrunch Registry</a> </li> </ul> </div> <hr/> <div class="inner-results"> <div class="the-title"> <ul class="list-inline up-ul" style="margin:7px 0"> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> <i title="Log In to Use Collections" class="icon-sm fa fa-square-o btn-login" style="cursor:pointer"></i> </span> </li> <h3 style="display:inline-block; text-transform:none"> <div><a href="https://rrid.site/data/record/nlx_144509-1/SCR_008201/resolver?q=%2A&l=&facet[]=Keywords%3Aanalysis&i=rrid:scr_008201">Migratory Locust EST Database <i class="fa fa-file-o"></i></a></div> </h3> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> </span> </li> <h4> RRID:SCR_008201 </h4> <span class="fa-stack fa-md"> <i class="fa fa-circle fa-stack-2x" style="color:#666767"></i> <i class="fa fa-line-chart fa-stack-1x fa-inverse"></i> </span> This resource has 1+ mentions. <a target="_self" href="/php/download-rin-rrid-mentions.php?viewid=nlx_144509-1&rrid=RRID:SCR_008201&tab=mentions&mode=all"><i class="fa fa-download" title="Download Mentions"></i></a> <span class="help-tooltip" data-name="mention-definition.html"></span> <!-- This resource was mentioned 7 times --> </ul> </div> <!-- --> <p><a target="_blank" href="http://locustdb.genomics.org.cn/">http://locustdb.genomics.org.cn/ <i class='fa fa-external-link'></i></a></p> <p>The migratory locust (Locusta migratoria) is an orthopteran pest and a representative member of hemimetabolous insects. Its transcriptomic data provide invaluable information for molecular entomology study of the insect and pave a way for comparative studies of other medically, agronomically, and ecologically relevant insects. This first transcriptomic database of the locust (LocustDB) has been developed, building necessary infrastructures to integrate, organize, and retrieve data that are either currently available or to be acquired in the future. It currently hosts 45,474 high quality EST sequences from the locust, which were assembled into 12,161 unigenes. This database contains original sequence data, including homologous/orthologous sequences, functional annotations, pathway analysis, and codon usage, based on conserved orthologous groups (COG), gene ontology (GO), protein domain (InterPro), and functional pathways (KEGG). It also provides information from comparative analysis based on data from the migratory locust and five other invertebrate species, such as the silkworm, the honeybee, the fruitfly, the mosquito and the nematode. LocustDB also provides information from comparative analysis based on data from the migratory locust and five other invertebrate species, such as the silkworm, the honeybee, the fruitfly, the mosquito and the nematode. It starts with the first transcriptome information for an orthopteran and hemimetabolous insect and will be extended to provide a framework for incorporation of in-coming genomic data of relevant insect groups and a workbench for cross-species comparative studies.</p> <p></p> <p> <strong>Proper citation:</strong> Migratory Locust EST Database (RRID:SCR_008201) <a href="javascript:void(0)" onclick="copyTextToClipboard('Migratory Locust EST Database (RRID:SCR_008201)', 'rrid:scr_008201')"> <i class="fa fa-clipboard"></i> Copy </a>&nbsp;&nbsp; <span id="rrid:scr_008201" class="copy-alert" style="text-align: center; width:120px; display:none"></span> </p> <ul class="list-inline up-ul"> <li> <i class="fa fa-info"></i> &nbsp;&nbsp;Source: <a href='https://rrid.site/rin/sources/SCR_005400' target='_blank'>SciCrunch Registry</a> </li> </ul> </div> <hr/> <div class="margin-bottom-30"></div> <div class="text-left"> <div class="text-left"><ul class="pagination"><li><a href="javascript:void(0)">芦</a></li><li class="active"><a class="not-rin" href="javascript:void(0)">1</a></li><li><a class="not-rin" href="https://rrid.site/data/source/nlx_144509-1/page/2/search?q=%2A&l=&facet[]=Keywords%3Aanalysis">2</a></li><li><a class="not-rin" href="https://rrid.site/data/source/nlx_144509-1/page/3/search?q=%2A&l=&facet[]=Keywords%3Aanalysis">3</a></li><li><a class="not-rin" href="https://rrid.site/data/source/nlx_144509-1/page/4/search?q=%2A&l=&facet[]=Keywords%3Aanalysis">4</a></li><li><a class="not-rin" href="https://rrid.site/data/source/nlx_144509-1/page/2/search?q=%2A&l=&facet[]=Keywords%3Aanalysis">禄</a></li></ul></div> </div> <hr/> <div class="rin"> <div id="cant-find-rrid"> <div class="panel"> <div class="panel-body"> <p>Can't find your Tool?</p> <p>We recommend that you click <span class="btn btn-info help-tooltip-btn" data-name="rin-search-tips.html"><i class="fa fa-question-circle"></i></span> next to the search bar to check some helpful tips on searches and refine your search firstly. 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