CINXE.COM

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It is structured hierarchically and contains all concepts of the ISSVA classification and the relationships between them. The ontology is available in the Web Ontology Language (OWL) format, and can be browsed and downloaded online: https://bioportal.bioontology.org/ontologies/ISSVA\r\n\r\nHow to Use the ISSVA Ontology?\r\n\r\nThe ISSVA ontology does not substitute the ISSVA classification, instead, it should be used as an additional component to facilitate interoperability. Every concept in the ISSVA ontology has a unique code that should be attached to the corresponding data element. In the context of databases, the ISSVA ontology codes could be added as an extra column to the existing data. \r\n\r\nMappings to Other Ontologies?\r\n\r\nThe ISSVA ontology contains machine-readable mappings to equivalent concepts in other ontologies, namely: the Orphanet Rare Disease Ontology (ORDO), SNOMED Clinical Terms (SNOMED CT), National Cancer Institute thesaurus (NCIT), and the Human Phenotype Ontology (HPO). This means that data annotated with codes from the ISSVA ontology are interoperable with data annotated with the aforementioned ontologies, without any extra effort, as long as there exists a mapping between the concepts.\r\n\r\nIssue Reporting\r\n\r\nPlease contact ISSVA at info@issva.org in case you have any issues and/or feature requests for the ISSVA ontology. 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","creationDate":"2022-09-03T18:11:10.000-07:00","submissionStatusFormatted":"Parsed, Indexed, Metrics, Annotator","format":"OWL"},{"class_count":224,"individual_count":59,"class_count_formatted":"224","individual_count_formatted":"59","id":"https://data.bioontology.org/ontologies/PACO","type":"ontology","show":true,"groups":[],"categories":["https://data.bioontology.org/categories/Human","https://data.bioontology.org/categories/Other","https://data.bioontology.org/categories/Health"],"note_count":0,"project_count":0,"private":false,"popularity":36,"submissionStatus":["RDF_LABELS","ANNOTATOR","DIFF","OBSOLETE","METRICS","RDF","UPLOADED","INDEXED_PROPERTIES","INDEXED"],"administeredBy":["https://data.bioontology.org/users/ifilgood"],"name":"Physical Activity Ontology","acronym":"PACO","projects":[],"notes":[],"artifacts":[],"submission":true,"pullLocation":null,"description":"Physical Activity Concept Ontology (PACO) contains various concepts that are required to describe one's physical activity. ","creationDate":"2019-02-14T11:18:45.000-08:00","submissionStatusFormatted":"Parsed, Indexed, Metrics, Annotator","format":"OWL"},{"class_count":67,"individual_count":0,"class_count_formatted":"67","individual_count_formatted":"0","id":"https://data.bioontology.org/ontologies/ADCAD","type":"ontology","show":true,"groups":[],"categories":[],"note_count":0,"project_count":0,"private":false,"popularity":35,"submissionStatus":["RDF_LABELS","ANNOTATOR","OBSOLETE","METRICS","RDF","UPLOADED","INDEXED_PROPERTIES","INDEXED"],"administeredBy":["https://data.bioontology.org/users/brycemecum"],"name":"Arctic Data Center Academic Disciplines Ontology","acronym":"ADCAD","projects":[],"notes":[],"artifacts":[],"submission":true,"pullLocation":null,"description":"Ontology to support disciplinary annotation of datasets housed at the Arctic Data Center (https://arcticdata.io)","creationDate":"2021-12-17T16:25:35.000-08:00","submissionStatusFormatted":"Parsed, Indexed, Metrics, Annotator","format":"OWL"},{"class_count":2284,"individual_count":0,"class_count_formatted":"2,284","individual_count_formatted":"0","id":"https://data.bioontology.org/ontologies/ECO","type":"ontology","show":true,"groups":["https://data.bioontology.org/groups/OBO_Foundry"],"categories":["https://data.bioontology.org/categories/Other"],"note_count":8,"project_count":4,"private":false,"popularity":35,"submissionStatus":["RDF_LABELS","ANNOTATOR","DIFF","OBSOLETE","METRICS","RDF","UPLOADED","INDEXED_PROPERTIES","INDEXED"],"administeredBy":["https://data.bioontology.org/users/mchibucos"],"name":"Evidence and Conclusion Ontology","acronym":"ECO","projects":["https://data.bioontology.org/projects/ISS","https://data.bioontology.org/projects/NEMO","https://data.bioontology.org/projects/ECO","https://data.bioontology.org/projects/DisGeNET-RDF"],"notes":["https://data.bioontology.org/notes/d1938256-c753-4332-a319-22576c31ea1c","https://data.bioontology.org/notes/a766fa94-a08e-46f6-9294-743d8488325f","https://data.bioontology.org/notes/d3956243-981c-4027-afee-88acfb540d01","https://data.bioontology.org/notes/6db6ebb0-95a7-4c40-8718-f7598c4bb7d5","https://data.bioontology.org/notes/b38af084-04b0-4861-a14d-0c3c6e08a832","https://data.bioontology.org/notes/d87fb5f8-8cb3-477c-8765-00653d9f9b4d","https://data.bioontology.org/notes/6575b5b2-8ad2-41b0-853c-ae0925e6a657","https://data.bioontology.org/notes/f0939c3a-73af-4fc2-8d0c-d77ecdab7022"],"artifacts":["notes","projects"],"submission":true,"pullLocation":"https://raw.githubusercontent.com/evidenceontology/evidenceontology/master/eco.obo","description":"An ontology of evidence types for supporting conclusions in scientific research","creationDate":"2024-07-19T18:03:32.000-07:00","submissionStatusFormatted":"Parsed, Indexed, Metrics, Annotator","format":"OBO"},{"class_count":37751,"individual_count":435,"class_count_formatted":"37,751","individual_count_formatted":"435","id":"https://data.bioontology.org/ontologies/FOODON","type":"ontology","show":true,"groups":["https://data.bioontology.org/groups/OBO_Foundry"],"categories":["https://data.bioontology.org/categories/Plant","https://data.bioontology.org/categories/All_Organisms","https://data.bioontology.org/categories/Health","https://data.bioontology.org/categories/Vocabularies","https://data.bioontology.org/categories/Biomedical_Resources"],"note_count":0,"project_count":2,"private":false,"popularity":35,"submissionStatus":["RDF_LABELS","ANNOTATOR","DIFF","OBSOLETE","METRICS","RDF","UPLOADED","INDEXED_PROPERTIES","INDEXED"],"administeredBy":["https://data.bioontology.org/users/damion"],"name":"The FoodOn Food Ontology","acronym":"FOODON","projects":["https://data.bioontology.org/projects/SYSTEMIC","https://data.bioontology.org/projects/CHEAR"],"notes":[],"artifacts":["projects"],"submission":true,"pullLocation":"https://raw.githubusercontent.com/FoodOntology/foodon/master/foodon.owl","description":"FoodOn is an ontology built to represent entities which bear a “food role” and is initially focused on categorizing and processing of food for humans. 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FoodOn belongs to the OBOFoundry.org family of ontologies.","creationDate":"2024-06-28T18:06:54.000+00:00","submissionStatusFormatted":"Parsed, Indexed, Metrics, Annotator","format":"OWL"},{"class_count":264,"individual_count":20,"class_count_formatted":"264","individual_count_formatted":"20","id":"https://data.bioontology.org/ontologies/IAO","type":"ontology","show":true,"groups":["https://data.bioontology.org/groups/OBO_Foundry"],"categories":["https://data.bioontology.org/categories/Other","https://data.bioontology.org/categories/Biomedical_Resources","https://data.bioontology.org/categories/Imaging"],"note_count":0,"project_count":13,"private":false,"popularity":35,"submissionStatus":["RDF_LABELS","ANNOTATOR","DIFF","OBSOLETE","METRICS","RDF","UPLOADED","INDEXED_PROPERTIES","INDEXED"],"administeredBy":["https://data.bioontology.org/users/iao-admin"],"name":"Information Artifact 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href=\"http://purl.obolibrary.org/obo/iao.owl\">http://purl.obolibrary.org/obo/iao.owl</a><p>\r\n\r\n<b>Other versions</b><p>\r\n\r\nDeveloper (live) version: <a href=\"http://purl.obolibrary.org/obo/iao/dev/iao.owl\">http://purl.obolibrary.org/obo/iao/dev/iao.owl</a><p>\r\n\r\nOntology metadata properties and classes only: <a href=\"http://purl.obolibrary.org/obo/iao/dev/ontology-metadata.owl\">http://purl.obolibrary.org/obo/iao/dev/iao.owl</a><p>\r\n\r\n<b>Dated versions</b>\r\n<ul>\r\n<li><a href=\"http://purl.obolibrary.org/obo/iao/2009-11-06/iao.owl\">http://purl.obolibrary.org/obo/iao/2009-11-06/iao.owl</a>\r\n<li><a href=\"http://purl.obolibrary.org/obo/iao/2010-09-14/iao.owl\">http://purl.obolibrary.org/obo/iao/2010-09-14/iao.owl</a>\r\n<li><a href=\"http://purl.obolibrary.org/obo/iao/2010-10-26/iao.owl\">http://purl.obolibrary.org/obo/iao/2010-10-26/iao.owl</a>\r\n<li><a href=\"http://purl.obolibrary.org/obo/iao/2011-05-09/iao.owl\">http://purl.obolibrary.org/obo/iao/2011-05-09/iao.owl</a>\r\n<li><a href=\"http://purl.obolibrary.org/obo/iao/2015-02-23/iao.owl\">http://purl.obolibrary.org/obo/iao/2015-02-23/iao.owl</a>\r\n</ul><p>\r\n\r\n<p>Please note: The ontology metrics displayed by BioPortal do not distinguish IAO-developed terms from terms imported from other ontologies.\r\n\r\n<p><b>Tracker</b>: <a href=\"http://purl.obolibrary.org/obo/iao/tracker\">http://purl.obolibrary.org/obo/iao/tracker</a><br>\r\n<b>Discussion group</b>: <a href=\"http://groups.google.com/group/information-ontology\">http://groups.google.com/group/information-ontology</a>","creationDate":"2022-11-15T18:06:15.000-08:00","submissionStatusFormatted":"Parsed, Indexed, Metrics, 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In addition, KiSAO captures relationships among algorithms, their parameters, and their outputs.","creationDate":"2024-03-14T12:51:52.000-07:00","submissionStatusFormatted":"Parsed, Indexed, Metrics, Annotator","format":"OWL"},{"class_count":364,"individual_count":26,"class_count_formatted":"364","individual_count_formatted":"26","id":"https://data.bioontology.org/ontologies/ADW","type":"ontology","show":true,"groups":[],"categories":["https://data.bioontology.org/categories/Anatomy"],"note_count":0,"project_count":0,"private":false,"popularity":33,"submissionStatus":["RDF_LABELS","ANNOTATOR","OBSOLETE","METRICS","RDF","UPLOADED","INDEXED_PROPERTIES","INDEXED"],"administeredBy":["https://data.bioontology.org/users/adw_geeks%40umich.edu"],"name":"Animal Natural History and Life History Ontology","acronym":"ADW","projects":[],"notes":[],"artifacts":[],"submission":true,"pullLocation":null,"description":"An ontology for animal life history and natural history characteristics suitable for populations and higher taxonomic entities.","creationDate":"2010-08-31T22:37:48.000-07:00","submissionStatusFormatted":"Parsed, Indexed, Metrics, Annotator","format":"OWL"},{"class_count":712018,"individual_count":21,"class_count_formatted":"712,018","individual_count_formatted":"21","id":"https://data.bioontology.org/ontologies/DDSS","type":"ontology","show":true,"groups":[],"categories":[],"note_count":0,"project_count":0,"private":false,"popularity":33,"submissionStatus":["RDF_LABELS","OBSOLETE","RDF","UPLOADED"],"administeredBy":["https://data.bioontology.org/users/safaa"],"name":"Health_ontology","acronym":"DDSS","projects":[],"notes":[],"artifacts":[],"submission":true,"pullLocation":null,"description":"This resource encompasses mappings from different ontologies: the Disease Ontology (DOID), the Symptom Ontology (SYMP), the Drug Ontology (DRON), and entities from OpenFDA for side effects.","creationDate":"2024-07-04T10:03:05.000-07:00","submissionStatusFormatted":"Parsed","format":"OWL"},{"class_count":1841,"individual_count":1472,"class_count_formatted":"1,841","individual_count_formatted":"1,472","id":"https://data.bioontology.org/ontologies/HENECON","type":"ontology","show":true,"groups":[],"categories":["https://data.bioontology.org/categories/Health","https://data.bioontology.org/categories/Vocabularies","https://data.bioontology.org/categories/Biomedical_Resources"],"note_count":0,"project_count":0,"private":false,"popularity":33,"submissionStatus":["RDF_LABELS","ANNOTATOR","OBSOLETE","METRICS","RDF","UPLOADED","INDEXED_PROPERTIES","INDEXED"],"administeredBy":["https://data.bioontology.org/users/lhernandez"],"name":"Head and Neck Cancer Ontology","acronym":"HENECON","projects":[],"notes":[],"artifacts":[],"submission":true,"pullLocation":null,"description":"HeNeCOn (Head and Neck Cancer Ontology) is the first ontology specifically focused on the Head and Neck Cancer (HNC) domain. 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","creationDate":"2023-03-21T05:22:36.000-07:00","submissionStatusFormatted":"Parsed, Indexed, Metrics, Annotator","format":"OWL"},{"class_count":1619,"individual_count":0,"class_count_formatted":"1,619","individual_count_formatted":"0","id":"https://data.bioontology.org/ontologies/MI","type":"ontology","show":true,"groups":["https://data.bioontology.org/groups/PSI","https://data.bioontology.org/groups/OBO_Foundry"],"categories":[],"note_count":0,"project_count":0,"private":false,"popularity":33,"submissionStatus":["RDF_LABELS","ANNOTATOR","DIFF","OBSOLETE","METRICS","RDF","UPLOADED","INDEXED_PROPERTIES","INDEXED"],"administeredBy":["https://data.bioontology.org/users/vendetti"],"name":"Molecular Interactions","acronym":"MI","projects":[],"notes":[],"artifacts":[],"submission":true,"pullLocation":"https://raw.githubusercontent.com/HUPO-PSI/psi-mi-CV/master/psi-mi.obo","description":"A structured controlled vocabulary for the annotation of experiments concerned with protein-protein interactions. Developed by the HUPO Proteomics Standards Initiative.","creationDate":"2024-08-06T18:10:15.000-07:00","submissionStatusFormatted":"Parsed, Indexed, Metrics, Annotator","format":"OBO"},{"class_count":31924,"individual_count":461,"class_count_formatted":"31,924","individual_count_formatted":"461","id":"https://data.bioontology.org/ontologies/CIDO","type":"ontology","show":true,"groups":["https://data.bioontology.org/groups/OBO_Foundry"],"categories":["https://data.bioontology.org/categories/Human","https://data.bioontology.org/categories/All_Organisms","https://data.bioontology.org/categories/Health"],"note_count":0,"project_count":0,"private":false,"popularity":32,"submissionStatus":["RDF_LABELS","ANNOTATOR","DIFF","OBSOLETE","METRICS","RDF","UPLOADED","INDEXED_PROPERTIES","INDEXED"],"administeredBy":["https://data.bioontology.org/users/yongqunh%40med.umich.edu"],"name":"Coronavirus Infectious Disease Ontology","acronym":"CIDO","projects":[],"notes":[],"artifacts":[],"submission":true,"pullLocation":"https://raw.githubusercontent.com/CIDO-ontology/cido/master/src/ontology/cido.owl","description":"The Ontology of Coronavirus Infectious Disease (CIDO) is a community-driven open-source biomedical ontology in the area of coronavirus infectious disease. The CIDO is developed to provide standardized human- and computer-interpretable annotation and representation of various coronavirus infectious diseases, including their etiology, transmission, pathogenesis, diagnosis, prevention, and treatment.","creationDate":"2024-02-16T18:02:53.000-08:00","submissionStatusFormatted":"Parsed, Indexed, Metrics, Annotator","format":"OWL"},{"class_count":2,"individual_count":162,"class_count_formatted":"2","individual_count_formatted":"162","id":"https://data.bioontology.org/ontologies/ZONMW-GENERIC","type":"ontology","show":true,"groups":[],"categories":["https://data.bioontology.org/categories/Other"],"note_count":0,"project_count":0,"private":false,"popularity":31,"submissionStatus":["RDF_LABELS","ANNOTATOR","OBSOLETE","METRICS","RDF","UPLOADED","ERROR_DIFF","INDEXED_PROPERTIES","INDEXED"],"administeredBy":["https://data.bioontology.org/users/graybeal","https://data.bioontology.org/users/mabablue"],"name":"ZonMw Generic Terms","acronym":"ZONMW-GENERIC","projects":[],"notes":[],"artifacts":[],"submission":true,"pullLocation":"https://raw.githubusercontent.com/gofair-foundation/vocabs_archive/main/zonmw_generic.ttl","description":"DEMO Vocabulary for general-purpose terms for the ZonMw Community built in M4M.14","creationDate":"2022-05-25T13:01:09.000-07:00","submissionStatusFormatted":"Parsed, Indexed, Metrics, Annotator, Error Diff","format":"SKOS"},{"class_count":362,"individual_count":23,"class_count_formatted":"362","individual_count_formatted":"23","id":"https://data.bioontology.org/ontologies/IDO","type":"ontology","show":true,"groups":["https://data.bioontology.org/groups/OBO_Foundry"],"categories":["https://data.bioontology.org/categories/All_Organisms","https://data.bioontology.org/categories/Health"],"note_count":2,"project_count":5,"private":false,"popularity":31,"submissionStatus":["RDF_LABELS","ANNOTATOR","OBSOLETE","METRICS","RDF","UPLOADED","ERROR_DIFF","INDEXED_PROPERTIES","INDEXED"],"administeredBy":["https://data.bioontology.org/users/johnbeve","https://data.bioontology.org/users/lgcowell","https://data.bioontology.org/users/ido-devel"],"name":"Infectious Disease Ontology","acronym":"IDO","projects":["https://data.bioontology.org/projects/IRD","https://data.bioontology.org/projects/Epiwork","https://data.bioontology.org/projects/IO","https://data.bioontology.org/projects/ViPR","https://data.bioontology.org/projects/Blood_Ontology"],"notes":["https://data.bioontology.org/notes/b54ee9a0-57f7-0138-d4ff-005056010088","https://data.bioontology.org/notes/c2a6ce20-57f6-0138-d4ff-005056010088"],"artifacts":["notes","projects"],"submission":true,"pullLocation":null,"description":"The IDO ontologies are designed as a set of interoperable ontologies that will together provide coverage of the infectious disease domain. 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The fire plays a determinant role on the structure and composition of Cerrado physiognomies.","creationDate":"2014-02-24T18:14:37.000-08:00","submissionStatusFormatted":"Parsed, Indexed, Metrics, Annotator","format":"OWL"},{"class_count":504,"individual_count":0,"class_count_formatted":"504","individual_count_formatted":"0","id":"https://data.bioontology.org/ontologies/LPT","type":"ontology","show":true,"groups":[],"categories":[],"note_count":0,"project_count":2,"private":false,"popularity":20,"submissionStatus":["RDF_LABELS","ANNOTATOR","DIFF","OBSOLETE","METRICS","RDF","UPLOADED","INDEXED_PROPERTIES","INDEXED"],"administeredBy":["https://data.bioontology.org/users/Vertebrate+Trait"],"name":"Livestock Product Trait Ontology","acronym":"LPT","projects":["https://data.bioontology.org/projects/QTLdb","https://data.bioontology.org/projects/CorrDB"],"notes":[],"artifacts":["projects"],"submission":true,"pullLocation":null,"description":"The Livestock Product Trait Ontology is a controlled vocabulary for the description of traits (measurable or observable characteristics) pertaining to products produced by or obtained from the body of an agricultural animal or bird maintained for use and profit. ","creationDate":"2022-12-21T11:14:00.000-08:00","submissionStatusFormatted":"Parsed, Indexed, Metrics, Annotator","format":"OBO"},{"class_count":90916,"individual_count":18,"class_count_formatted":"90,916","individual_count_formatted":"18","id":"https://data.bioontology.org/ontologies/OMIT","type":"ontology","show":true,"groups":["https://data.bioontology.org/groups/OBO_Foundry"],"categories":["https://data.bioontology.org/categories/Protein","https://data.bioontology.org/categories/Human","https://data.bioontology.org/categories/Biological_Process","https://data.bioontology.org/categories/Molecule","https://data.bioontology.org/categories/Cell","https://data.bioontology.org/categories/Gene_Product"],"note_count":0,"project_count":1,"private":false,"popularity":20,"submissionStatus":["RDF_LABELS","ANNOTATOR","DIFF","OBSOLETE","METRICS","RDF","UPLOADED","INDEXED_PROPERTIES","INDEXED"],"administeredBy":["https://data.bioontology.org/users/huang-omit"],"name":"Ontology for MicroRNA Target","acronym":"OMIT","projects":["https://data.bioontology.org/projects/NeuMORE"],"notes":[],"artifacts":["projects"],"submission":true,"pullLocation":"http://purl.obolibrary.org/obo/omit.owl","description":"The purpose of the OMIT ontology is to establish data exchange standards and common data elements in the microRNA (miR) domain. \r\n\r\nBiologists (cell biologists in particular) and bioinformaticians can make use of OMIT to leverage emerging semantic technologies in knowledge acquisition and discovery for more effective identification of important roles performed by miRs in humans' various diseases and biological processes (usually through miRs' respective target genes).\r\n\r\nOMIT has reused and extended a set of well-established concepts from existing bio-ontologies, e.g., Gene Ontology, Sequence Ontology, Protein Ontology, NCBI Organism Taxonomy, Human Disease Ontology, Foundational Model of Anatomy, and so forth.","creationDate":"2021-01-05T18:15:28.000-08:00","submissionStatusFormatted":"Parsed, Indexed, Metrics, Annotator","format":"OWL"},{"class_count":13452,"individual_count":0,"class_count_formatted":"13,452","individual_count_formatted":"0","id":"https://data.bioontology.org/ontologies/PDQ","type":"ontology","show":true,"groups":["https://data.bioontology.org/groups/UMLS"],"categories":["https://data.bioontology.org/categories/Health"],"note_count":0,"project_count":0,"private":false,"popularity":20,"submissionStatus":["RDF_LABELS","ANNOTATOR","DIFF","OBSOLETE","METRICS","RDF","UPLOADED","INDEXED_PROPERTIES","INDEXED"],"administeredBy":["https://data.bioontology.org/users/admin"],"name":"Physician Data Query","acronym":"PDQ","projects":[],"notes":[],"artifacts":[],"submission":true,"pullLocation":null,"description":"Physician Data Query (PDQ) Terminology is part of NCI's comprehensive cancer information database, which contains expert summaries on a wide range of cancer topics, a listing of some 30,000 cancer clinical trials from around the world, a directory of genetics services professionals, the NCI Dictionary of Cancer Terms, and the NCI Drug Dictionary.","creationDate":"2024-08-28T16:07:49.000-07:00","submissionStatusFormatted":"Parsed, Indexed, Metrics, Annotator","format":"UMLS"},{"class_count":48,"individual_count":8484,"class_count_formatted":"48","individual_count_formatted":"8,484","id":"https://data.bioontology.org/ontologies/THREE-ST","type":"ontology","show":true,"groups":[],"categories":["https://data.bioontology.org/categories/Human","https://data.bioontology.org/categories/Health"],"note_count":0,"project_count":1,"private":false,"popularity":20,"submissionStatus":["RDF_LABELS","ANNOTATOR","DIFF","OBSOLETE","METRICS","RDF","UPLOADED","INDEXED_PROPERTIES","INDEXED"],"administeredBy":["https://data.bioontology.org/users/meerwijk"],"name":"3-Step Theory of suicide","acronym":"THREE-ST","projects":["https://data.bioontology.org/projects/3ST+Study"],"notes":[],"artifacts":["projects"],"submission":true,"pullLocation":null,"description":"This ontology contains classes, sub-classes, and relationships that map onto the 3-Step Theory of suicide (3ST). 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In brief, the theory holds that suicide only occurs if pain and hopelessness outweigh connectedness and only then if the capacity for suicide is present.","creationDate":"2023-07-13T09:19:30.000-07:00","submissionStatusFormatted":"Parsed, Indexed, Metrics, Annotator","format":"OWL"},{"class_count":2,"individual_count":273,"class_count_formatted":"2","individual_count_formatted":"273","id":"https://data.bioontology.org/ontologies/ZONMW-CONTENT","type":"ontology","show":true,"groups":[],"categories":[],"note_count":1,"project_count":0,"private":false,"popularity":19,"submissionStatus":["RDF_LABELS","ANNOTATOR","OBSOLETE","METRICS","RDF","UPLOADED","ERROR_DIFF","INDEXED_PROPERTIES","INDEXED"],"administeredBy":["https://data.bioontology.org/users/mabablue"],"name":"ZonMW COVID-19","acronym":"ZONMW-CONTENT","projects":[],"notes":["https://data.bioontology.org/notes/8d000960-5c77-013d-292d-005056010128"],"artifacts":["notes"],"submission":true,"pullLocation":"https://raw.githubusercontent.com/gofair-foundation/vocabs_archive/main/zonmw_content.ttl","description":"DEMO-vocabulary with collections of terms for the ZonMW COVID19 programme created in M4M.14 facilitated by GO FAIR Foundation. 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The Spatial Ontology defines the shape, size, location, and rotation of experimental tissue and data major anatomical structures in the 3D Reference Object Library. The Specimen Ontology captures the sex, age, and other information on donors that provided tissue data used in the construction of the HRA.","creationDate":"2024-06-14T18:30:58.000+00:00","submissionStatusFormatted":"Parsed, Indexed, Metrics, Annotator","format":"OWL"},{"class_count":14864,"individual_count":1281,"class_count_formatted":"14,864","individual_count_formatted":"1,281","id":"https://data.bioontology.org/ontologies/CHEAR","type":"ontology","show":true,"groups":[],"categories":["https://data.bioontology.org/categories/Human","https://data.bioontology.org/categories/Health"],"note_count":0,"project_count":1,"private":false,"popularity":19,"submissionStatus":["RDF_LABELS","ANNOTATOR","DIFF","OBSOLETE","METRICS","RDF","UPLOADED","INDEXED_PROPERTIES","INDEXED"],"administeredBy":["https://data.bioontology.org/users/jimmccusker"],"name":"Children's Health Exposure Analysis Resource","acronym":"CHEAR","projects":["https://data.bioontology.org/projects/CHEAR"],"notes":[],"artifacts":["projects"],"submission":true,"pullLocation":null,"description":"Children's health and wellbeing are influenced by interactions between environmental and genetic factors. 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We anticipate that CHEAR will be used by children's health researchers conducting epidemiological or clinical studies that currently have limited consideration of environmental exposures, or those who have collected exposure data but seek more extensive analyses.","creationDate":"2019-09-10T13:13:01.000-07:00","submissionStatusFormatted":"Parsed, Indexed, Metrics, Annotator","format":"OWL"},{"class_count":386,"individual_count":0,"class_count_formatted":"386","individual_count_formatted":"0","id":"https://data.bioontology.org/ontologies/CNO","type":"ontology","show":true,"groups":[],"categories":["https://data.bioontology.org/categories/Vocabularies"],"note_count":5,"project_count":0,"private":false,"popularity":19,"submissionStatus":["RDF_LABELS","ANNOTATOR","DIFF","OBSOLETE","METRICS","RDF","UPLOADED","INDEXED_PROPERTIES","INDEXED"],"administeredBy":["https://data.bioontology.org/users/ylefranc"],"name":"Computational Neuroscience Ontology","acronym":"CNO","projects":[],"notes":["https://data.bioontology.org/notes/9379a22d-a260-44ec-9f76-6ead65e28f38","https://data.bioontology.org/notes/f0fb2a88-2914-4e3e-9794-d93262014133","https://data.bioontology.org/notes/69eb502a-264f-4e9c-9fe5-606a5f997c51","https://data.bioontology.org/notes/4681068d-ea0e-466c-a0b9-db2da3cef3d8","https://data.bioontology.org/notes/29fdb8a7-fe98-49f4-8dd4-4b0c8a4837a5"],"artifacts":["notes"],"submission":true,"pullLocation":"http://purl.org/incf/ontology/Computational_Neurosciences/cno_alpha.owl","description":"CNO is a controlled vocabulary of terms used in Computational Neurosciences to describe models of the nervous system. \r\nThis first release of CNO is an alpha version and should be further aligned with other ontologies accessible on Bioportal and should be made compliant with the OBO foundry recommendations. \r\nThis work is licensed under the Creative Commons Attribution 3.0 Unported License. To view a copy of this license, visit http://creativecommons.org/licenses/by/3.0/ or send a letter to Creative Commons, 444 Castro Street, Suite 900, Mountain View, California, 94041, USA.\r\nIf you have any comments, questions or suggestions, please contact Yann Le Franc at ylefranc(at)gmail.com.","creationDate":"2015-11-16T18:21:21.000-08:00","submissionStatusFormatted":"Parsed, Indexed, Metrics, Annotator","format":"OWL"},{"class_count":0,"individual_count":0,"class_count_formatted":"0","individual_count_formatted":"0","id":"https://data.bioontology.org/ontologies/EMO","type":"ontology","show":true,"groups":[],"categories":["https://data.bioontology.org/categories/Protein"],"note_count":0,"project_count":2,"private":false,"popularity":19,"submissionStatus":[],"administeredBy":["https://data.bioontology.org/users/glholliday"],"name":"Enzyme Mechanism Ontology","acronym":"EMO","projects":["https://data.bioontology.org/projects/MACiE","https://data.bioontology.org/projects/SFLD"],"notes":[],"artifacts":["projects"],"creationDate":"1990-06-01T00:00:00.000+00:00"},{"class_count":0,"individual_count":0,"class_count_formatted":"0","individual_count_formatted":"0","id":"https://data.bioontology.org/ontologies/EXMO","type":"ontology","show":true,"groups":[],"categories":["https://data.bioontology.org/categories/Human","https://data.bioontology.org/categories/Health"],"note_count":0,"project_count":0,"private":false,"popularity":19,"submissionStatus":["RDF_LABELS","ANNOTATOR","DIFF","OBSOLETE","METRICS","RDF","UPLOADED","INDEXED_PROPERTIES","INDEXED"],"administeredBy":["https://data.bioontology.org/users/XingyunLiu"],"name":"Exercise Medicine Ontology","acronym":"EXMO","projects":[],"notes":[],"artifacts":[],"submission":true,"pullLocation":null,"description":"A core reference ontology built upon BFO about exercise medicine. This ontology contains the related terms for healthy people, people with chronic conditions and people living with diability to exercise.","creationDate":"2024-06-13T14:41:21.000+00:00","submissionStatusFormatted":"Parsed, Indexed, Metrics, Annotator","format":"OWL"},{"class_count":649,"individual_count":0,"class_count_formatted":"649","individual_count_formatted":"0","id":"https://data.bioontology.org/ontologies/FBbi","type":"ontology","show":true,"groups":[],"categories":["https://data.bioontology.org/categories/Experimental_Conditions","https://data.bioontology.org/categories/Imaging"],"note_count":0,"project_count":1,"private":false,"popularity":19,"submissionStatus":["RDF_LABELS","ANNOTATOR","DIFF","OBSOLETE","METRICS","RDF","UPLOADED","INDEXED_PROPERTIES","INDEXED"],"administeredBy":["https://data.bioontology.org/users/chris%40bio.umass.edu"],"name":"Biological Imaging Methods Ontology","acronym":"FBbi","projects":["https://data.bioontology.org/projects/FlyBase"],"notes":[],"artifacts":["projects"],"submission":true,"pullLocation":"http://purl.obolibrary.org/obo/fbbi.owl","description":"A structured controlled vocabulary of sample preparation, visualization and imaging methods used in biomedical research.","creationDate":"2020-11-06T18:03:32.000-08:00","submissionStatusFormatted":"Parsed, Indexed, Metrics, Annotator","format":"OWL"},{"class_count":603,"individual_count":0,"class_count_formatted":"603","individual_count_formatted":"0","id":"https://data.bioontology.org/ontologies/HTN","type":"ontology","show":true,"groups":["https://data.bioontology.org/groups/OBO_Foundry"],"categories":["https://data.bioontology.org/categories/Other"],"note_count":0,"project_count":0,"private":false,"popularity":19,"submissionStatus":["RDF_LABELS","ANNOTATOR","OBSOLETE","METRICS","RDF","UPLOADED","INDEXED_PROPERTIES","INDEXED"],"administeredBy":["https://data.bioontology.org/users/vendetti"],"name":"Hypertension Ontology","acronym":"HTN","projects":[],"notes":[],"artifacts":[],"submission":true,"pullLocation":"http://purl.obolibrary.org/obo/htn.owl","description":"The Hypertension Ontology is a realism-based reference ontology for semantically managing clinical data about hypertension. Definitions of hypertension and elevated blood pressure are highly sensitive to context. Thresholds may vary according to population, guidelines, or clinical context. Variations in the clinical interpretation of blood pressure pose challenges to using blood pressure data for cohort identification, semantic data integration across data sets, and semantically enriching clinical data for clinical decision support applications. The Hypertension Ontology provides a framework for connecting clinical data to context-sensitive definitions of elevated blood pressure and hypertension.","creationDate":"2019-09-04T13:18:48.000-07:00","submissionStatusFormatted":"Parsed, Indexed, Metrics, Annotator","format":"OWL"},{"class_count":2920,"individual_count":15,"class_count_formatted":"2,920","individual_count_formatted":"15","id":"https://data.bioontology.org/ontologies/HUPSON","type":"ontology","show":true,"groups":[],"categories":["https://data.bioontology.org/categories/Health"],"note_count":0,"project_count":0,"private":false,"popularity":19,"submissionStatus":["RDF_LABELS","ANNOTATOR","OBSOLETE","METRICS","RDF","UPLOADED","INDEXED_PROPERTIES","INDEXED"],"administeredBy":["https://data.bioontology.org/users/akodamullil","https://data.bioontology.org/users/maestro"],"name":"Human Physiology Simulation Ontology","acronym":"HUPSON","projects":[],"notes":[],"artifacts":[],"submission":true,"pullLocation":null,"description":"Large biomedical simulation initiatives, such as the Virtual Physiological Human (VPH), are substantially dependent on controlled vocabularies to facilitate the exchange of information, of data and of models. Hindering these initiatives is a lack of a comprehensive ontology that covers the essential concepts of the simulation domain. \r\nWe propose a first version of a newly constructed ontology, HuPSON, as a basis for shared semantics and interoperability of simulations, of models, of algorithms and of other resources in this domain. The ontology is based on the Basic Formal Ontology, and adheres to the MIREOT principles.","creationDate":"2014-04-07T21:46:38.000-07:00","submissionStatusFormatted":"Parsed, Indexed, Metrics, Annotator","format":"OWL"},{"class_count":3148,"individual_count":0,"class_count_formatted":"3,148","individual_count_formatted":"0","id":"https://data.bioontology.org/ontologies/ISPO","type":"ontology","show":true,"groups":[],"categories":["https://data.bioontology.org/categories/Health"],"note_count":0,"project_count":0,"private":false,"popularity":19,"submissionStatus":["RDF_LABELS","ANNOTATOR","OBSOLETE","METRICS","RDF","UPLOADED","INDEXED_PROPERTIES","INDEXED"],"administeredBy":["https://data.bioontology.org/users/HuaRui"],"name":"Integrated Ontology for Symptom Phenotype Terminologies","acronym":"ISPO","projects":[],"notes":[],"artifacts":[],"submission":true,"pullLocation":null,"description":"ISPO delivers an integrated controlled vocabulary for symptom phenotypes, with both clinical and biomedical literature synonyms in Chinese and English languages, it would enhance the semantic interoperability among heterogeneous medical data sources and clinical decision support systems. Furthermore, symptom ontology would propose a standard vocabulary for teasing the symptom-gene associations and thus become a vital requirement for symptom science and TCM biological discovery.","creationDate":"2023-01-10T00:46:41.000-08:00","submissionStatusFormatted":"Parsed, Indexed, Metrics, Annotator","format":"OWL"},{"class_count":533,"individual_count":0,"class_count_formatted":"533","individual_count_formatted":"0","id":"https://data.bioontology.org/ontologies/PHENX","type":"ontology","show":true,"groups":[],"categories":["https://data.bioontology.org/categories/Phenotype"],"note_count":0,"project_count":0,"private":false,"popularity":19,"submissionStatus":["RDF_LABELS","ANNOTATOR","DIFF","OBSOLETE","METRICS","RDF","UPLOADED","INDEXED_PROPERTIES","INDEXED"],"administeredBy":["https://data.bioontology.org/users/yingqin"],"name":"PhenX Phenotypic Terms","acronym":"PHENX","projects":[],"notes":[],"artifacts":[],"submission":true,"pullLocation":null,"description":"Standard measures related to complex diseases, phenotypic traits and environmental exposures","creationDate":"2016-10-13T11:11:33.000-07:00","submissionStatusFormatted":"Parsed, Indexed, Metrics, Annotator","format":"OWL"},{"class_count":2125,"individual_count":0,"class_count_formatted":"2,125","individual_count_formatted":"0","id":"https://data.bioontology.org/ontologies/ROLEO","type":"ontology","show":true,"groups":[],"categories":[],"note_count":0,"project_count":0,"private":false,"popularity":19,"submissionStatus":["RDF_LABELS","ANNOTATOR","DIFF","OBSOLETE","METRICS","RDF","UPLOADED","INDEXED_PROPERTIES","INDEXED"],"administeredBy":["https://data.bioontology.org/users/yongqunh%40med.umich.edu"],"name":"Role Ontology","acronym":"ROLEO","projects":[],"notes":[],"artifacts":[],"submission":true,"pullLocation":"https://raw.githubusercontent.com/roleontology/roleo/master/src/ontology/roleo_merged.owl","description":"The Role Ontology (RoleO) is an ontology in the domain of role classification. RoleO aims to standardize role classification and support computer-assisted reasoning. RoleO development follows the OBO Foundry principles. RoleO has represented all the occupations defined in the Standard Occupational Classification (SOC) System from the USA Bureau of Labor Statistics. ","creationDate":"2018-03-24T18:13:32.000-07:00","submissionStatusFormatted":"Parsed, Indexed, Metrics, Annotator","format":"OWL"},{"class_count":1908,"individual_count":578,"class_count_formatted":"1,908","individual_count_formatted":"578","id":"https://data.bioontology.org/ontologies/SEPON","type":"ontology","show":true,"groups":[],"categories":["https://data.bioontology.org/categories/Human","https://data.bioontology.org/categories/Health"],"note_count":0,"project_count":0,"private":false,"popularity":19,"submissionStatus":["RDF_LABELS","ANNOTATOR","OBSOLETE","METRICS","RDF","UPLOADED","ERROR_DIFF","INDEXED_PROPERTIES","INDEXED"],"administeredBy":["https://data.bioontology.org/users/zc1995"],"name":"Sepsis Ontology","acronym":"SEPON","projects":[],"notes":[],"artifacts":[],"submission":true,"pullLocation":null,"description":"The Sepsis Ontology (SEPON) is a disease-specific ontology that defines the concepts and relationships between concepts in the field of sepsis and related diseases, contributing to data standardization and providing precise and personalized diagnosis, treatment and prognosis recommandations for sepsis.","creationDate":"2024-05-14T08:46:02.000+00:00","submissionStatusFormatted":"Parsed, Indexed, Metrics, Annotator, Error Diff","format":"OWL"},{"class_count":3875,"individual_count":0,"class_count_formatted":"3,875","individual_count_formatted":"0","id":"https://data.bioontology.org/ontologies/BPT","type":"ontology","show":true,"groups":[],"categories":["https://data.bioontology.org/categories/Protein","https://data.bioontology.org/categories/Biological_Process","https://data.bioontology.org/categories/Health","https://data.bioontology.org/categories/Immunology","https://data.bioontology.org/categories/Cell","https://data.bioontology.org/categories/Subcellular"],"note_count":0,"project_count":0,"private":false,"popularity":18,"submissionStatus":["RDF_LABELS","ANNOTATOR","OBSOLETE","METRICS","RDF","UPLOADED","ERROR_DIFF","INDEXED_PROPERTIES","INDEXED"],"administeredBy":["https://data.bioontology.org/users/a.nesterova"],"name":"Biological Pathway Taxonomy","acronym":"BPT","projects":[],"notes":[],"artifacts":[],"submission":true,"pullLocation":null,"description":"Biological Pathway Taxonomy (BPT) - hierarchical taxonomy of cellular and molecular mechanisms, metabolic reactions, and diseases that can be shown as signaling pathways. 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