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4.8k • written 7 days ago by <a itemprop="author" itemscope itemtype="https://schema.org/Person" href="/u/79799/"> <span itemprop="name">Cosmic</span> </a> • 0 </div> </div> </div> </div> <div class="post open item" data-value="9161614"> <div class="stats"> <div class="ui mini stat left label"> <div>0</div> <div>votes</div> </div> <div class="ui label stat mini question has_answers open bookmark"> <div>1</div> <div>reply</div> </div> <div class="ui label basic transparent stat mini"> <div>492</div> <div>views</div> </div> </div> <div class="content"> <div class="title mini header"> <a href="/p/9161614/"> Mismatch between Illumina Mouse Methylation BeadChip annotation and genome browsers (UCSC/Ensembl) </a> </div> <div class="extra right floated"> <div class="left floated"> <a class="ptag" href="/tag/methylationArrayAnalysis/"> methylationArrayAnalysis </a> <a class="ptag" href="/tag/MethylationArrayData/"> MethylationArrayData </a> </div> <div class="right floated muted"> updated 7 days ago by <a itemprop="author" itemscope itemtype="https://schema.org/Person" href="/u/5106/"> <span itemprop="name">James W. 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itemtype="https://schema.org/Person" href="/u/79671/"> <span itemprop="name">Elijah</span> </a> • 0 </div> </div> </div> </div> <div class="post open item" data-value="9161604"> <div class="stats"> <div class="ui mini stat left label"> <div>0</div> <div>votes</div> </div> <div class="ui label stat mini question open bookmark"> <div>4</div> <div>replies</div> </div> <div class="ui label basic transparent stat mini"> <div>1.1k</div> <div>views</div> </div> </div> <div class="content"> <div class="title mini header"> <a href="/p/9161604/"> Error in H5Dclose(h5dataset) when trying to read in kallisto h5 files </a> </div> <div class="extra right floated"> <div class="left floated"> <a class="ptag" href="/tag/tximport/"> tximport </a> <a class="ptag" href="/tag/rhdf5/"> rhdf5 </a> </div> <div class="right floated muted"> <span> 8 days ago • updated 3 days ago <a href="/u/79790/"> Sofia </a> • 0 </span> </div> </div> </div> </div> <div class="post open item" data-value="9161601"> <div class="stats"> <div class="ui mini stat left label"> <div>1</div> <div>vote</div> </div> <div class="ui label stat mini question open bookmark"> <div>1</div> <div>reply</div> </div> <div class="ui label basic transparent stat mini"> <div>727</div> <div>views</div> </div> </div> <div class="content"> <div class="title mini header"> <a href="/p/9161601/"> ComBat with repeated measures </a> </div> <div class="extra right floated"> <div class="left floated"> <a class="ptag" href="/tag/ComBat/"> ComBat </a> <a class="ptag" href="/tag/sva/"> sva </a> </div> <div class="right floated muted"> updated 7 days ago by <a itemprop="author" itemscope itemtype="https://schema.org/Person" href="/u/13662/"> <span itemprop="name">ATpoint</span> </a> &starf; 4.8k • written 8 days ago by <a itemprop="author" itemscope itemtype="https://schema.org/Person" href="/u/79789/"> <span itemprop="name">s20</span> </a> • 0 </div> </div> </div> </div> <div class="post open item" data-value="9161600"> <div class="stats"> <div class="ui mini stat left label"> <div>0</div> <div>votes</div> </div> <div class="ui label stat mini news open bookmark"> <div>0</div> <div>replies</div> </div> <div class="ui label basic transparent stat mini"> <div>43</div> <div>views</div> </div> </div> <div class="content"> <div class="title mini header"> News: <a href="/p/9161600/"> List of Deprecated Packages for Bioc3.21 </a> </div> <div class="extra right floated"> <div class="left floated"> <a class="ptag" href="/tag/devel/"> devel </a> <a class="ptag" href="/tag/Release/"> Release </a> <a class="ptag" href="/tag/release/"> release </a> <a class="ptag" href="/tag/Devel/"> Devel </a> </div> <div class="right floated muted"> <span> 8 days ago <a href="/u/10588/"> shepherl </a> <i class="ui muted bolt icon"></i> 4.1k </span> </div> </div> </div> </div> <div class="post open item" data-value="9161599"> <div class="stats"> <div class="ui mini stat left label"> <div>0</div> <div>votes</div> </div> <div class="ui 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href="/tag/Preprocessing/"> Preprocessing </a> <a class="ptag" href="/tag/Microarray/"> Microarray </a> </div> <div class="right floated muted"> updated 18 days ago by <a itemprop="author" itemscope itemtype="https://schema.org/Person" href="/u/5106/"> <span itemprop="name">James W. 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MacDonald</span> </a> <i class="ui muted bolt icon"></i> 68k • written 21 days ago by <a itemprop="author" itemscope itemtype="https://schema.org/Person" href="/u/79720/"> <span itemprop="name">Erika</span> </a> • 0 </div> </div> </div> </div> <div class="post open item" data-value="9161489"> <div class="stats"> <div class="ui mini stat left label"> <div>0</div> <div>votes</div> </div> <div class="ui label stat mini question has_answers open bookmark"> <div>2</div> <div>replies</div> </div> <div class="ui label basic transparent stat mini"> <div>618</div> <div>views</div> </div> </div> <div class="content"> <div class="title mini header"> <a href="/p/9161489/"> Clarification on GOALL / GO2ALLORFs mapping </a> </div> <div class="extra right floated"> <div class="left floated"> <a class="ptag" href="/tag/org.Sc.sgd.db/"> org.Sc.sgd.db </a> </div> <div class="right floated muted"> <span> 22 days ago • updated 16 days ago <a href="/u/79707/"> DavideSant </a> • 0 </span> </div> </div> </div> </div> </div> <div class="ui page-bar segment"> <span class="phone">46,435 results • Page </span> 1 of 929 <a class="ui small basic button no-shadow" href="/?page=2"> <i class="ui angle double right icon"></i> </a> </div> </div> <div class="four wide column sidefeed"> <div class="ui large wrap-text" id="sidebar"> <b>Recent ... </b> <div class="ui large wrap-text"> <div class="event"> <div class="ui container"> <span>Replies </span> <div class="ui relaxed list" > <div class="item spaced"> <a href="/p/9161655/"> Comment: DESeq2 - human data, weird results, troubleshooting</a> by <a href="/u/74785/">bd2000 </a> <span> &utrif; 30 </span> <div class="muted" style=""> I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst… </div> </div> <div class="item spaced"> <a href="/p/9161653/"> Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin</a> by <a href="/u/5106/">James W. MacDonald </a> <span> <i class="ui muted bolt icon"></i> 68k </span> <div class="muted" style=""> The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j… </div> </div> <div class="item spaced"> <a href="/p/9161652/"> Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin</a> by <a href="/u/13662/">ATpoint </a> <span> &starf; 4.8k </span> <div class="muted" style=""> > since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde… </div> </div> <div class="item spaced"> <a href="/p/9161650/"> Comment: Ensembl site unresponsive via biomaRt</a> by <a href="/u/79802/">darylruiz6545 </a> <span> • 0 </span> <div class="muted" style=""> Thank you so much for sharing the link. </div> </div> <div class="item spaced"> <a href="/p/9161648/"> Comment: compute_fasta_digest does not match Salmon index hash</a> by <a href="/u/79776/">Alex </a> <span> • 0 </span> <div class="muted" style=""> I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f… </div> </div> </div> </div> </div> <div class="ui divider"></div> <div class="event"> <div class="ui container"> <div>Votes </div> <div class="ui relaxed list" > <div class="item spaced" > <a href="/p/9161653/">Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin</a> </div> <div class="item spaced" > <a href="/p/9154011/">Two EPIC Methylation Array Analysis Questions</a> </div> <div class="item spaced" > <a href="/p/9155304/">How to get DMR for Infinium methylation EPIC v2</a> </div> <div class="item spaced" > <a href="/p/89393/">A: GEOquery Fails to Download Series Matrix File</a> </div> <div class="item spaced" > <a href="/p/9161637/">Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species</a> </div> </div> </div> </div> <div class="ui divider"></div> <div class="event"> <div class="ui container"> <span>Awards</span> <a href="/b/list/"> • All <i class="ui angle small double right icon"></i></a> <div class="ui relaxed list" > <div class="item" style=""> <span> <a href="/b/view/popular-question/">Popular Question <i class="eye icon"></i></a> to <a href="/u/74785/"> bd2000</a> <span> &utrif; 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