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Tools</b></a><ul><li><img src="/i/leaf.gif"><a href="/info/docs/tools/vep/" title="Ensembl Variant Effect Predictor (VEP)">Ensembl Variant Effect Predictor (VEP)</a></li><li><img src="/i/leaf.gif"><a href="/info/docs/tools/simulator/" title="Variant Simulator">Variant Simulator</a></li><li class="last"><img src="/i/leaf.gif"><a href="/info/docs/tools/vcftoped/" title="VCF to PED Converter">VCF to PED Converter</a></li></ul></li><li class="top_level parent"><img src="/i/open.gif" class="toggle _info_docs_api_" alt=""><a href="/info/docs/api/"><b>API Documentation</b></a><ul><li><img src="/i/leaf.gif"><a href="/info/docs/api/api_installation.html" title="API Installation">API Installation</a></li><li><img src="/i/leaf.gif"><a href="/info/docs/api/api_git.html" title="API Installation - Git">API Installation - Git</a></li><li><img src="/i/leaf.gif"><a href="/info/docs/api/registry.html" title="API Registry">API Registry</a></li><li><img src="/i/leaf.gif"><a 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Software">API & Software</a></li></ul> <div id="content"><div id="static"> <h1>API & Software</h1> <p>All of the software created by the Ensembl project is open source and freely available to download from our <a rel="external" href="https://github.com/Ensembl">GitHub repository</a>.</p> <h2>Perl API</h2> <p>The Perl API provides an abstraction layer for accessing the genomic databases. 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All of these can be run on the command line, and some can also be run via a web front end, so you don't even need to install any software! <a href="/info/docs/tools/">Learn more</a>...</p> <h2>eHive production system</h2> <p>Many of our pipelines and back-end data processing is managed using <a href="eHive.html">eHive</a>, a job flow system written in Perl.</p> <h2>Web code</h2> <p>You can also run a local copy of this website by <a href="/info/docs/webcode/">installing our codebase</a> and associated Perl dependencies. Please note that this is a non-trivial task, and we only support installation on Linux. For help with other operating systems as well as general support with custom development, we recommend joining our developers' <a rel="external" href="/info/about/contact/mailing.html">mailing list</a>. 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value=Ovis_aries_rambouillet|Amphiprion_percula|Athene_cunicularia|Petromyzon_marinus|Danio_rerio|Stachyris_ruficeps|Mus_musculus_LP_J|Cavia_porcellus|Anolis_carolinensis|Balaenoptera_musculus|Calidris_pygmaea|Takifugu_rubripes|Tursiops_truncatus|Sus_scrofa_pietrain|Ovis_aries_white_dorper|Ovis_aries_hu|Echeneis_naucrates|Marmota_marmota_marmota|Rhinopithecus_roxellana|Apteryx_haastii|Oreochromis_niloticus|Panthera_leo|Lepisosteus_oculatus|Cervus_hanglu_yarkandensis|Macaca_fascicularis|Sus_scrofa_usmarc|Scleropages_formosus|Podarcis_muralis|Sus_scrofa|Sorex_araneus|Theropithecus_gelada|Malurus_cyaneus_samueli|Dasypus_novemcinctus|Peromyscus_maniculatus_bairdii|Xiphophorus_maculatus|Ictidomys_tridecemlineatus|Gasterosteus_aculeatus|Macaca_mulatta|Lonchura_striata_domestica|Sus_scrofa_bamei|Oryzias_javanicus|Gouania_willdenowi|Larimichthys_crocea|Saimiri_boliviensis_boliviensis|Camarhynchus_parvulus|Cricetulus_griseus_crigri|Cricetulus_griseus_chok1gshd|Rattus_norvegicus_SHRUtx|Varanus_komodoensis|Mus_musculus_C3H_HeJ|Macaca_nemestrina|Canis_lupus_dingo|Bison_bison_bison|Mus_musculus_DBA_2J|Mesocricetus_auratus|Betta_splendens|Salmo_salar_european_origin_alta|Ovis_aries_texel|Homo_sapiens|Sus_scrofa_duroc|Canis_lupus_familiarisbasenji|Bos_grunniens|Mus_musculus_BALB_cJ|Urocitellus_parryii|Mola_mola|Bos_taurus_hybrid|Sus_scrofa_berkshire|Procavia_capensis|Heterocephalus_glaber_female|Poecilia_reticulata|Pelusios_castaneus|Calidris_pugnax|Cricetulus_griseus_picr|Otus_sunia|Cyprinus_carpio_hebao_red|Pygocentrus_nattereri|Xenopus_tropicalis|Oryctolagus_cuniculus|Poecilia_mexicana|Laticauda_laticaudata|Ochotona_princeps|Notechis_scutatus|Sus_scrofa_meishan_GCA_017957985.1|Oncorhynchus_tshawytscha|Ovis_aries_romanov|Numida_meleagris|Mus_musculus|Canis_lupus_familiarisgermanshepherd|Sus_scrofa_euw1|Oryzias_melastigma|Mus_musculus_CBA_J|Salvator_merianae|Oncorhynchus_kisutch|Sinocyclocheilus_anshuiensis|Esox_lucius|Sus_scrofa_tibetan|Cyclopterus_lumpus|Amphilophus_citrinellus|Echinops_telfairi|Castor_canadensis|Sander_lucioperca|Apteryx_owenii|Notamacropus_eugenii|Rhinopithecus_bieti|Astyanax_mexicanus_pachon|Callorhinchus_milii|Ornithorhynchus_anatinus|Crocodylus_porosus|Mandrillus_leucophaeus|Vicugna_pacos|Gasterosteus_aculeatus_freshwater_bot|Oryzias_latipes|Gadus_morhua_celtic_sea|Hippocampus_comes|Spermophilus_dauricus|Sus_scrofa_meishan|Leptobrachium_leishanense|Oryzias_latipes_hsok|Colobus_angolensis_palliatus|Bos_mutus|Stegastes_partitus|Paramormyrops_kingsleyae|Lepidothrix_coronata|Rattus_norvegicus_WKYBbb|Sparus_aurata|Fukomys_damarensis|Cairina_moschata_domestica|Octodon_degus|Sus_scrofa_bama_miniature|Tetraodon_nigroviridis|Sus_scrofa_jinhua|Anas_platyrhynchos_platyrhynchos|Cynoglossus_semilaevis|Microcebus_murinus|Panthera_pardus|Ovis_aries_east_friesian|Vombatus_ursinus|Astyanax_mexicanus|Moschus_moschiferus|Chinchilla_lanigera|Mus_musculus_NZO_HlLtJ|Neogobius_melanostomus|Anabas_testudineus|Anas_zonorhyncha|Gasterosteus_aculeatus_marine_syl|Tupaia_belangeri|Gambusia_affinis|Ovis_aries_chinese_merino|Canis_lupus_familiarisgreatdane|Papio_anubis|Canis_lupus_familiarisboxer|Piliocolobus_tephrosceles|Mastacembelus_armatus|Parambassis_ranga|Anser_cygnoides|Ailuropoda_melanoleuca|Phascolarctos_cinereus|Sphenodon_punctatus|Cavia_aperea|Mus_musculus_C57BL_6NJ|Mus_musculus_A_J|Ictalurus_punctatus|Ursus_maritimus|Clupea_harengus|Ursus_americanus|Cyprinus_carpio_carpio|Myripristis_murdjan|Delphinapterus_leucas|Struthio_camelus_australis|Anas_platyrhynchos|Oreochromis_aureus|Monopterus_albus|Chlorocebus_sabaeus|Kryptolebias_marmoratus|Aotus_nancymaae|Ciona_savignyi|Sinocyclocheilus_grahami|Zosterops_lateralis_melanops|Vulpes_vulpes|Chelydra_serpentina|Catagonus_wagneri|Mus_musculus_AKR_J|Lynx_canadensis|Sarcophilus_harrisii|Drosophila_melanogaster|Cercocebus_atys|Sus_scrofa_ossabaw_miniature|Melopsittacus_undulatus|Cebus_imitator|Astatotilapia_calliptera|Gallus_gallus_GCA_016700215.2|Fundulus_heteroclitus|Pongo_abelii|Meleagris_gallopavo|Serinus_canaria|Gadus_morhua|Poecilia_latipinna|Rattus_norvegicus_SHRSPBbbUtx|Mus_spicilegus|Nomascus_leucogenys|Mus_musculus_129S1_SvImJ|Xiphophorus_couchianus|Eptatretus_burgeri|Equus_asinus|Amazona_collaria|Camelus_dromedarius|Loxodonta_africana|Erythrura_gouldiae|Parus_major|Salmo_salar_north_american_atlantic_salmon|Equus_caballus|Prolemur_simus|Pelodiscus_sinensis|Ficedula_albicollis|Salmo_trutta|Microtus_ochrogaster|Lates_calcarifer|Poecilia_formosa|Ovis_aries_qiaoke|Catharus_ustulatus|Monodelphis_domestica|Pogona_vitticeps|Manacus_vitellinus|Mus_spretus|Buteo_japonicus|Gallus_gallus_GCA_000002315.5|Sciurus_vulgaris|Pavo_cristatus|Sus_scrofa_ningxiang|Sus_scrofa_landrace|Periophthalmus_magnuspinnatus|Saccharomyces_cerevisiae|Labrus_bergylta|Carassius_auratus|Strix_occidentalis_caurina|Apteryx_rowi|Cottoperca_gobio|Myotis_lucifugus|Rhinolophus_ferrumequinum|Zalophus_californianus|Phocoena_sinus|Ciona_intestinalis|Oryzias_sinensis|Amphiprion_ocellaris|Pan_troglodytes|Ovis_aries_polled_dorset|Salarias_fasciatus|Acanthochromis_polyacanthus|Chrysolophus_pictus|Pseudonaja_textilis|Falco_tinnunculus|Salmo_salar_north_american_origin_brian|Pundamilia_nyererei|Coturnix_japonica|Gallus_gallus|Cyprinus_carpio_german_mirror|Cyprinodon_variegatus|Gasterosteus_aculeatus_marine_bam|Neolamprologus_brichardi|Salmo_salar|Zonotrichia_albicollis|Choloepus_hoffmanni|Canis_lupus_familiaris|Erinaceus_europaeus|Capra_hircus_saanen_dairy|Sinocyclocheilus_rhinocerous|Sus_scrofa_nihs_2020|Sus_scrofa_largewhite|Haplochromis_burtoni|Naja_naja|Heterocephalus_glaber_male|Ursus_thibetanus_thibetanus|Corvus_moneduloides|Mus_musculus_FVB_NJ|Sus_scrofa_hampshire|Pan_paniscus|Dromaius_novaehollandiae|Junco_hyemalis|Capra_hircus|Seriola_dumerili|Cyanistes_caeruleus|Sus_scrofa_pb115|Carlito_syrichta|Nothobranchius_furzeri|Ovis_aries_kermani|Bubo_bubo|Sus_scrofa_wuzhishan|Caenorhabditis_elegans|Geospiza_fortis|Aquila_chrysaetos_chrysaetos|Gopherus_agassizii|Gorilla_gorilla|Capra_hircus_blackbengal|Sphaeramia_orbicularis|Denticeps_clupeoides|Callithrix_jacchus|Bos_taurus|Cyprinus_carpio_huanghe|Mus_musculus_PWK_PhJ|Taeniopygia_guttata|Seriola_lalandi_dorsalis|Jaculus_jaculus|Hucho_hucho|Electrophorus_electricus|Pteropus_vampyrus|Mus_musculus_WSB_EiJ|Bos_indicus_hybrid|Anser_brachyrhynchus|Chrysemys_picta_bellii|Capra_hircus_xinong_saanen_dairy|Erpetoichthys_calabaricus|Physeter_catodon|Mustela_putorius_furo|Rattus_norvegicus|Gopherus_evgoodei|Maylandia_zebra|Oryzias_latipes_hni|Strigops_habroptila|Chelonoidis_abingdonii|Neovison_vison|Panthera_tigris_altaica|Oncorhynchus_mykiss|Monodon_monoceros|Accipiter_nisus|Dicentrarchus_labrax|Latimeria_chalumnae|Dipodomys_ordii|Nannospalax_galili|Suricata_suricatta|Terrapene_carolina_triunguis|Felis_catus|Mus_pahari|Mus_musculus_CAST_EiJ|Otolemur_garnettii|Propithecus_coquereli|Nothoprocta_perdicaria|Scophthalmus_maximus|Phasianus_colchicus|Mus_caroli|Meriones_unguiculatus|Mus_musculus_NOD_ShiLtJ|Sus_scrofa_rongchang> 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