Research Groups - CZ Biohub San Francisco

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class="groups-projects--hero"> <figure class="abs-full"> <img class="block img-fit-cover" src="https://www.czbiohub.org/sf/wp-content/uploads/sites/18/2023/09/Rectangle-2899-1.jpg" alt=""> </figure> <div class="groups-projects--hero-content "> <div class="sub-wrap eye--l"> <p> <a href="/sf/our-work/" class="eye--l">Our Work</a> </p> <svg viewBox="0 0 10 10" fill="none" xmlns="http://www.w3.org/2000/svg"> <path d="M4.19239 0.99999L8.38479 5.19238L4.19239 9.38478" stroke="white" stroke-opacity="0.25"/> </svg> <p class="eye--l">RESEARCH GROUPS</p> </div> <h1>Mapping dynamic cell systems</h1> </div> </section> <section class="groups-projects--content short "> <div class="container"> <div class="content-intro-wrapper"> <h2>Diseases are caused by disruptions in the inner workings of cells or in the communication between cells. That’s why we support rigorous, quantitative research in molecular, cell, and developmental biology, and in infectious disease. Our scientists are showing how healthy cells are built and how they work and, more importantly, what takes place when disease strikes.</h2> </div> <div id="groups" class="groups-projects--nav is-first"> <ul> <li> <a href="#groups">Groups</a> </li> <li> <a href="#featured-projects">Featured Projects</a> </li> </ul> </div> <div class="card-sections"> <div class="rows"> <div class="card"> <figure> <div class="inner-wrap"> <img src="https://www.czbiohub.org/sf/wp-content/uploads/sites/18/2023/02/map4.jpg" alt="Microscopic close up of cells"> </div> <div class="authors"> <div class="img-wrap"> <img class="author-img" src="https://www.czbiohub.org/sf/wp-content/uploads/sites/18/2021/04/manuel_leonetti.webp?w=764" alt="Author Image"> </div> </div> </figure> <article> <p class="card-title">Intracellular Architecture</p> <p>Bringing together cell biologists, data scientists, and engineers, the team led by <b>Manuel Leonetti</b> is building reference maps of how the human cell is internally organized. Their flagship project, <a href="https://opencell.czbiohub.org/" target="_blank" rel="noopener">OpenCell</a>, characterizes the spatial locations and molecular interactions of the proteins that make up the cell.</p> <a class="link-wrap" href="https://www.czbiohub.org/leonetti/" target=""> <svg width="19" height="19" viewBox="0 0 19 19" fill="none" xmlns="http://www.w3.org/2000/svg"> <path fill-rule="evenodd" clip-rule="evenodd" d="M9.79395 16.3403C13.5219 16.3403 16.5439 13.3183 16.5439 9.59035C16.5439 5.86243 13.5219 2.84035 9.79395 2.84035C6.06602 2.84035 3.04395 5.86243 3.04395 9.59035C3.04395 13.3183 6.06602 16.3403 9.79395 16.3403Z" stroke="#00A3E0" stroke-width="1.10334" stroke-linecap="round" stroke-linejoin="round"/> <path d="M9.79395 6.21535V12.9653" stroke="#00A3E0" stroke-width="1.10334" stroke-linecap="round" stroke-linejoin="round"/> <path d="M13.1689 9.59035H6.41895" stroke="#00A3E0" stroke-width="1.10334" stroke-linecap="round" stroke-linejoin="round"/> </svg> <span> Learn More </span> </a> </article> </div> <div class="card"> <figure> <div class="inner-wrap"> <img src="https://www.czbiohub.org/sf/wp-content/uploads/sites/18/2023/02/Organismal-Architecture.jpg" alt="Zebrafish zygote"> </div> <div class="authors"> <div class="img-wrap"> <img class="author-img" src="https://www.czbiohub.org/sf/wp-content/uploads/sites/18/2021/04/lo_c_royer.webp?w=765" alt="Author Image"> </div> </div> </figure> <article> <p class="card-title">Organismal Architecture</p> <p>A pluridisciplinary team of computer scientists, optical engineers, and biologists, <strong>Loïc Royer</strong> and his team are building <a href="https://zebrahub.ds.czbiohub.org/" target="_blank" rel="noopener">Zebrahub</a>, a time-resolved, multidimensional atlas of vertebrate development using zebrafish as a model organism.</p> <a class="link-wrap" href="https://www.czbiohub.org/royer/" target=""> <svg width="19" height="19" viewBox="0 0 19 19" fill="none" xmlns="http://www.w3.org/2000/svg"> <path fill-rule="evenodd" clip-rule="evenodd" d="M9.79395 16.3403C13.5219 16.3403 16.5439 13.3183 16.5439 9.59035C16.5439 5.86243 13.5219 2.84035 9.79395 2.84035C6.06602 2.84035 3.04395 5.86243 3.04395 9.59035C3.04395 13.3183 6.06602 16.3403 9.79395 16.3403Z" stroke="#00A3E0" stroke-width="1.10334" stroke-linecap="round" stroke-linejoin="round"/> <path d="M9.79395 6.21535V12.9653" stroke="#00A3E0" stroke-width="1.10334" stroke-linecap="round" stroke-linejoin="round"/> <path d="M13.1689 9.59035H6.41895" stroke="#00A3E0" stroke-width="1.10334" stroke-linecap="round" stroke-linejoin="round"/> </svg> <span> Learn More </span> </a> </article> </div> <div class="card"> <figure> <div class="inner-wrap"> <img src="https://www.czbiohub.org/sf/wp-content/uploads/sites/18/2023/10/protein_purifier_1000px_2.webp" alt="Microscopic close up of cells"> </div> <div class="authors"> <div class="img-wrap"> <img class="author-img" src="https://www.czbiohub.org/sf/wp-content/uploads/sites/18/2022/07/keir_balla.webp?w=765" alt="Author Image"> </div> </div> </figure> <article> <p class="card-title">Organismal Infection Biology</p> <p><b>Keir Balla</b>‘s group discovers zebrafish viruses and deploys them as tools for capturing infection dialogs <em>in toto</em> with visual and molecular precision.</p> <a class="link-wrap" href="https://www.czbiohub.org/balla/" target=""> <svg width="19" height="19" viewBox="0 0 19 19" fill="none" xmlns="http://www.w3.org/2000/svg"> <path fill-rule="evenodd" clip-rule="evenodd" d="M9.79395 16.3403C13.5219 16.3403 16.5439 13.3183 16.5439 9.59035C16.5439 5.86243 13.5219 2.84035 9.79395 2.84035C6.06602 2.84035 3.04395 5.86243 3.04395 9.59035C3.04395 13.3183 6.06602 16.3403 9.79395 16.3403Z" stroke="#00A3E0" stroke-width="1.10334" stroke-linecap="round" stroke-linejoin="round"/> <path d="M9.79395 6.21535V12.9653" stroke="#00A3E0" stroke-width="1.10334" stroke-linecap="round" stroke-linejoin="round"/> <path d="M13.1689 9.59035H6.41895" stroke="#00A3E0" stroke-width="1.10334" stroke-linecap="round" stroke-linejoin="round"/> </svg> <span> Learn More </span> </a> </article> </div> <div class="card"> <figure> <div class="inner-wrap"> <img src="https://www.czbiohub.org/sf/wp-content/uploads/sites/18/2023/02/Protein-Science.jpg" alt="3D model of protein"> </div> <div class="authors"> <div class="img-wrap"> <img class="author-img" src="https://www.czbiohub.org/sf/wp-content/uploads/sites/18/2021/04/john_pak.webp?w=765" alt="Author Image"> </div> </div> </figure> <article> <p class="card-title">Protein Science</p> <p><strong>John Pak</strong>’s Protein Science group develops and applies methods to design, produce, and characterize viral antigens and antibodies that are highly relevant to human health.</p> <a class="link-wrap" href="/pak/" target=""> <svg width="19" height="19" viewBox="0 0 19 19" fill="none" xmlns="http://www.w3.org/2000/svg"> <path fill-rule="evenodd" clip-rule="evenodd" d="M9.79395 16.3403C13.5219 16.3403 16.5439 13.3183 16.5439 9.59035C16.5439 5.86243 13.5219 2.84035 9.79395 2.84035C6.06602 2.84035 3.04395 5.86243 3.04395 9.59035C3.04395 13.3183 6.06602 16.3403 9.79395 16.3403Z" stroke="#00A3E0" stroke-width="1.10334" stroke-linecap="round" stroke-linejoin="round"/> <path d="M9.79395 6.21535V12.9653" stroke="#00A3E0" stroke-width="1.10334" stroke-linecap="round" stroke-linejoin="round"/> <path d="M13.1689 9.59035H6.41895" stroke="#00A3E0" stroke-width="1.10334" stroke-linecap="round" stroke-linejoin="round"/> </svg> <span> Learn More </span> </a> </article> </div> <div class="card"> <figure> <div class="inner-wrap"> <img src="https://www.czbiohub.org/sf/wp-content/uploads/sites/18/2023/02/Quantitative-Tissue-Morphogenesis.jpg" alt="Microscopic close up of zebrafish tissue"> </div> <div class="authors"> <div class="img-wrap"> <img class="author-img" src="https://www.czbiohub.org/sf/wp-content/uploads/sites/18/2022/05/adrian_jacobo.webp?w=765" alt="Author Image"> </div> </div> </figure> <article> <p class="card-title">Quantitative Tissue Morphogenesis</p> <p>Using a combination of zebrafish transgenesis, cutting-edge imaging tools, and mathematical modeling, <strong>Adrian Jacobo</strong>‘s group aims to understand how tissue architecture emerges from the spatial and temporal dynamics of cell–cell signaling.</p> <a class="link-wrap" href="/jacobo/" target=""> <svg width="19" height="19" viewBox="0 0 19 19" fill="none" xmlns="http://www.w3.org/2000/svg"> <path fill-rule="evenodd" clip-rule="evenodd" d="M9.79395 16.3403C13.5219 16.3403 16.5439 13.3183 16.5439 9.59035C16.5439 5.86243 13.5219 2.84035 9.79395 2.84035C6.06602 2.84035 3.04395 5.86243 3.04395 9.59035C3.04395 13.3183 6.06602 16.3403 9.79395 16.3403Z" stroke="#00A3E0" stroke-width="1.10334" stroke-linecap="round" stroke-linejoin="round"/> <path d="M9.79395 6.21535V12.9653" stroke="#00A3E0" stroke-width="1.10334" stroke-linecap="round" stroke-linejoin="round"/> <path d="M13.1689 9.59035H6.41895" stroke="#00A3E0" stroke-width="1.10334" stroke-linecap="round" stroke-linejoin="round"/> </svg> <span> Learn More </span> </a> </article> </div> <div class="card"> <figure> <div class="inner-wrap"> <img src="https://www.czbiohub.org/sf/wp-content/uploads/sites/18/2023/02/Rectangle-190-4-1.jpg" alt="Pair of scientists working at a desk"> </div> <div class="authors"> <div class="img-wrap"> <img class="author-img" src="https://www.czbiohub.org/sf/wp-content/uploads/sites/18/2021/04/cristina_tato.webp?w=764" alt="Author Image"> </div> </div> </figure> <article> <p class="card-title">Rapid Response Team</p> <p>The Rapid Response Team, led by <strong>Cristina Tato</strong>, is collaborating with health agencies in the U.S. and in low- and middle-income countries to build capacity in sequencing, metagenomics, and molecular epidemiology.</p> <a class="link-wrap" href="/rapid-response/" target=""> <svg width="19" height="19" viewBox="0 0 19 19" fill="none" xmlns="http://www.w3.org/2000/svg"> <path fill-rule="evenodd" clip-rule="evenodd" d="M9.79395 16.3403C13.5219 16.3403 16.5439 13.3183 16.5439 9.59035C16.5439 5.86243 13.5219 2.84035 9.79395 2.84035C6.06602 2.84035 3.04395 5.86243 3.04395 9.59035C3.04395 13.3183 6.06602 16.3403 9.79395 16.3403Z" stroke="#00A3E0" stroke-width="1.10334" stroke-linecap="round" stroke-linejoin="round"/> <path d="M9.79395 6.21535V12.9653" stroke="#00A3E0" stroke-width="1.10334" stroke-linecap="round" stroke-linejoin="round"/> <path d="M13.1689 9.59035H6.41895" stroke="#00A3E0" stroke-width="1.10334" stroke-linecap="round" stroke-linejoin="round"/> </svg> <span> Learn More </span> </a> </article> </div> <div class="card"> <figure> <div class="inner-wrap"> <img src="https://www.czbiohub.org/sf/wp-content/uploads/sites/18/2023/02/broll-select-sequencing-cz-biohub.jpg" alt="Close up of gloved hands putting tube into holder"> </div> <div class="authors"> <div class="img-wrap"> <img class="author-img" src="https://www.czbiohub.org/sf/wp-content/uploads/sites/18/2022/09/ranen_aviner.webp?w=765" alt="Author Image"> </div> </div> </figure> <article> <p class="card-title">Ribosomes and Human Disease</p> <p><strong>Ranen Aviner</strong>’s group uses molecular biology, transcriptomics, and proteomics to investigate how ribosomal networks change during viral infection or neurodegenerative disease, with the goal of designing rational therapeutic interventions.</p> <a class="link-wrap" href="https://www.czbiohub.org/aviner/" target=""> <svg width="19" height="19" viewBox="0 0 19 19" fill="none" xmlns="http://www.w3.org/2000/svg"> <path fill-rule="evenodd" clip-rule="evenodd" d="M9.79395 16.3403C13.5219 16.3403 16.5439 13.3183 16.5439 9.59035C16.5439 5.86243 13.5219 2.84035 9.79395 2.84035C6.06602 2.84035 3.04395 5.86243 3.04395 9.59035C3.04395 13.3183 6.06602 16.3403 9.79395 16.3403Z" stroke="#00A3E0" stroke-width="1.10334" stroke-linecap="round" stroke-linejoin="round"/> <path d="M9.79395 6.21535V12.9653" stroke="#00A3E0" stroke-width="1.10334" stroke-linecap="round" stroke-linejoin="round"/> <path d="M13.1689 9.59035H6.41895" stroke="#00A3E0" stroke-width="1.10334" stroke-linecap="round" stroke-linejoin="round"/> </svg> <span> Learn More </span> </a> </article> </div> <div class="card"> <figure> <div class="inner-wrap"> <img src="https://www.czbiohub.org/sf/wp-content/uploads/sites/18/2023/02/Rectangle-190-3-1.jpg" alt="Close up of gloved hands pouring liquid from a jar into a cup."> </div> <div class="authors"> <div class="img-wrap"> <img class="author-img" src="https://www.czbiohub.org/sf/wp-content/uploads/sites/18/2021/04/amy_kistler.webp?w=764" alt="Author Image"> </div> </div> </figure> <article> <p class="card-title">Viral Replication and Transcription</p> <p>Combining synthetic biology and genetic, biochemical, and computational approaches, <strong>Amy Kistler</strong>’s group aims to dissect and compare the minimal components, host-factor requirements, and function of diverse viral replication and transcription complexes.</p> <a class="link-wrap" href="/kistler/" target=""> <svg width="19" height="19" viewBox="0 0 19 19" fill="none" xmlns="http://www.w3.org/2000/svg"> <path fill-rule="evenodd" clip-rule="evenodd" d="M9.79395 16.3403C13.5219 16.3403 16.5439 13.3183 16.5439 9.59035C16.5439 5.86243 13.5219 2.84035 9.79395 2.84035C6.06602 2.84035 3.04395 5.86243 3.04395 9.59035C3.04395 13.3183 6.06602 16.3403 9.79395 16.3403Z" stroke="#00A3E0" stroke-width="1.10334" stroke-linecap="round" stroke-linejoin="round"/> <path d="M9.79395 6.21535V12.9653" stroke="#00A3E0" stroke-width="1.10334" stroke-linecap="round" stroke-linejoin="round"/> <path d="M13.1689 9.59035H6.41895" stroke="#00A3E0" stroke-width="1.10334" stroke-linecap="round" stroke-linejoin="round"/> </svg> <span> Learn More </span> </a> </article> </div> <div class="card"> <figure> <div class="inner-wrap"> <img src="https://www.czbiohub.org/sf/wp-content/uploads/sites/18/2023/02/Rectangle-190-6.jpg" alt="Scientist behind glass shelving working in a lab"> </div> <div class="authors"> <div class="img-wrap"> <img class="author-img" src="https://www.czbiohub.org/sf/wp-content/uploads/sites/18/2022/05/carolina_arias.webp?w=764" alt="Author Image"> </div> </div> </figure> <article> <p class="card-title">Virus–Host Interactions</p> <p>The group led by <strong>Carolina Arias</strong> explores virus–host interactions in cells infected with medically relevant viruses. Using comparative virology, the team aims to identify and validate conserved nodes within the proteostasis network that can be targeted pharmacologically to develop broad-spectrum antivirals.</p> <a class="link-wrap" href="/arias/" target=""> <svg width="19" height="19" viewBox="0 0 19 19" fill="none" xmlns="http://www.w3.org/2000/svg"> <path fill-rule="evenodd" clip-rule="evenodd" d="M9.79395 16.3403C13.5219 16.3403 16.5439 13.3183 16.5439 9.59035C16.5439 5.86243 13.5219 2.84035 9.79395 2.84035C6.06602 2.84035 3.04395 5.86243 3.04395 9.59035C3.04395 13.3183 6.06602 16.3403 9.79395 16.3403Z" stroke="#00A3E0" stroke-width="1.10334" stroke-linecap="round" stroke-linejoin="round"/> <path d="M9.79395 6.21535V12.9653" stroke="#00A3E0" stroke-width="1.10334" stroke-linecap="round" stroke-linejoin="round"/> <path d="M13.1689 9.59035H6.41895" stroke="#00A3E0" stroke-width="1.10334" stroke-linecap="round" stroke-linejoin="round"/> </svg> <span> Learn More </span> </a> </article> </div> </div> </div> <div id="featured-projects" class="groups-projects--nav is-second"> <ul> <li> <a href="#groups">Groups</a> </li> <li> <a href="#featured-projects">Featured Projects</a> </li> </ul> </div> <div class="card-sections"> <div class="rows"> <div class="card"> <figure> <div class="inner-wrap"> <img src="https://www.czbiohub.org/sf/wp-content/uploads/sites/18/2023/09/16_9.jpg" alt=""> </div> </figure> <article> <p class="card-title">Zebrahub</p> <p>Zebrahub is a single-embryo, single-cell atlas of zebrafish vertebrate development.</p> <a class="link-wrap" href="https://zebrahub.ds.czbiohub.org/" target="_blank"> <svg width="19" height="19" viewBox="0 0 19 19" fill="none" xmlns="http://www.w3.org/2000/svg"> <path fill-rule="evenodd" clip-rule="evenodd" d="M9.79395 16.3403C13.5219 16.3403 16.5439 13.3183 16.5439 9.59035C16.5439 5.86243 13.5219 2.84035 9.79395 2.84035C6.06602 2.84035 3.04395 5.86243 3.04395 9.59035C3.04395 13.3183 6.06602 16.3403 9.79395 16.3403Z" stroke="#00A3E0" stroke-width="1.10334" stroke-linecap="round" stroke-linejoin="round"/> <path d="M9.79395 6.21535V12.9653" stroke="#00A3E0" stroke-width="1.10334" stroke-linecap="round" stroke-linejoin="round"/> <path d="M13.1689 9.59035H6.41895" stroke="#00A3E0" stroke-width="1.10334" stroke-linecap="round" stroke-linejoin="round"/> </svg> <span> Learn More </span> </a> </article> </div> <div class="card"> <figure> <div class="inner-wrap"> <img src="https://www.czbiohub.org/sf/wp-content/uploads/sites/18/2023/09/16_99.jpg" alt=""> </div> </figure> <article> <p class="card-title">OpenCell</p> <p>OpenCell is a proteome-scale collection of protein localization and interaction measurements in human cells.</p> <a class="link-wrap" href="https://opencell.czbiohub.org/" target="_blank"> <svg width="19" height="19" viewBox="0 0 19 19" fill="none" xmlns="http://www.w3.org/2000/svg"> <path fill-rule="evenodd" clip-rule="evenodd" d="M9.79395 16.3403C13.5219 16.3403 16.5439 13.3183 16.5439 9.59035C16.5439 5.86243 13.5219 2.84035 9.79395 2.84035C6.06602 2.84035 3.04395 5.86243 3.04395 9.59035C3.04395 13.3183 6.06602 16.3403 9.79395 16.3403Z" stroke="#00A3E0" stroke-width="1.10334" stroke-linecap="round" stroke-linejoin="round"/> <path d="M9.79395 6.21535V12.9653" stroke="#00A3E0" stroke-width="1.10334" stroke-linecap="round" stroke-linejoin="round"/> <path d="M13.1689 9.59035H6.41895" stroke="#00A3E0" stroke-width="1.10334" stroke-linecap="round" stroke-linejoin="round"/> </svg> <span> Learn More </span> </a> </article> </div> <div class="card"> <figure> <div class="inner-wrap"> <img src="https://www.czbiohub.org/sf/wp-content/uploads/sites/18/2023/09/16_999.jpg" alt=""> </div> </figure> <article> <p class="card-title">PoMeLo</p> <p>A novel bioinformatic approach for identifying metabolic vulnerabilities of pathogens to inform host-directed therapeutics</p> <a class="link-wrap" href="https://github.com/czbiohub-sf/pomelo" target="_blank"> <svg width="19" height="19" viewBox="0 0 19 19" 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