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All rights reserved. Background image by Spencer Phillips</div> </aside> <aside id="eu_cookie_law_widget-2" class="widget widget_eu_cookie_law_widget"> <div class="hide-on-button" data-hide-timeout="30" data-consent-expiration="365" id="eu-cookie-law" > <form method="post"> <input type="submit" value="Close and accept" class="accept" /> </form> This website requires cookies, and the limited processing of your personal data in order to function. By using the site you are agreeing to this as outlined in our <a href="https://www.ebi.ac.uk/data-protection/ensembl/privacy-notice" rel=""> Privacy Policy </a> </div> </aside> </div> </div> </div> <div id="primary" class="content-area col-lg-9" itemprop="mainContentOfPage"> <div id="content" class="site-content" role="main"> <article itemscope itemtype="http://schema.org/Article" id="post-15421" class="post-15421 post type-post status-publish format-standard hentry category-07-status tag-blast tag-service-status"> <header class="entry-header"> <h2 class="entry-title" itemprop="name"> <a itemprop="url" href="https://www.ensembl.info/2024/04/30/downtime-of-ensembl-blast-blat/" title="Permalink to Downtime of Ensembl Genomes BLAST" rel="bookmark">Downtime of Ensembl Genomes BLAST</a> </h2> <div class="entry-meta"><span class="entry-date"><a href="https://www.ensembl.info/2024/04/30/downtime-of-ensembl-blast-blat/" rel="bookmark"><time class="entry-date published" datetime="2024-04-30T11:42:11+01:00" itemprop="datepublished">30th April 2024</time></a></span> by <span class="author vcard" itemscope itemprop="author" itemtype="http://schema.org/Person"><a class="url fn n" href="https://www.ensembl.info/author/bmoore/" rel="author" itemprop="url"><span itemprop="name">Ben (Outreach)</span></a></span><span class="sep">·</span><span class="comments-link"><span>Comments Off<span class="screen-reader-text"> on Downtime of Ensembl Genomes BLAST</span></span></span></div> </header> <div class="entry-content" itemprop="articleBody"> <p>Due to scheduled maintenance work, Ensembl Genomes BLAST will be temporarily unavailable on Tuesday 7th May 2024.</p> <a class="btn btn-default btn-sm" href="https://www.ensembl.info/2024/04/30/downtime-of-ensembl-blast-blat/">Continue reading <i class="fa fa-angle-double-right"></i></a> </div> </article> <article itemscope itemtype="http://schema.org/Article" id="post-15338" class="post-15338 post type-post status-publish format-standard hentry category-05-community tag-bioinformatician tag-bioinformatics tag-career tag-ensembl tag-genebuild tag-teamsembl"> <header class="entry-header"> <h2 class="entry-title" itemprop="name"> <a itemprop="url" href="https://www.ensembl.info/2024/04/26/getting-to-know-us-swati-from-ensembl-genebuild/" title="Permalink to Getting to know us: Swati from Ensembl Genebuild" rel="bookmark">Getting to know us: Swati from Ensembl Genebuild</a> </h2> <div class="entry-meta"><span class="entry-date"><a href="https://www.ensembl.info/2024/04/26/getting-to-know-us-swati-from-ensembl-genebuild/" rel="bookmark"><time class="entry-date published" datetime="2024-04-26T13:39:14+01:00" itemprop="datepublished">26th April 2024</time></a></span> by <span class="author vcard" itemscope itemprop="author" itemtype="http://schema.org/Person"><a class="url fn n" href="https://www.ensembl.info/author/lpmirabueno/" rel="author" itemprop="url"><span itemprop="name">Louisse Paola Mirabueno</span></a></span><span class="sep">·</span><span class="comments-link"><span>Comments Off<span class="screen-reader-text"> on Getting to know us: Swati from Ensembl Genebuild</span></span></span></div> </header> <div class="entry-content" itemprop="articleBody"> <p>We are back with our <em>Getting to know us </em>(a.k.a. Teamsembl) blog series after a short hiatus in March. For the month of April, we got the chance to <a href="https://www.ebi.ac.uk/people/person/swati-sinha/" target="_blank" rel="noreferrer noopener">Swati Sinha</a> who is a senior bioinformatician in the Ensembl Genebuild team. The Genebuild team is in charge of the Ensembl automatic annotation pipeline. Read all about Swati and have a look at the amazing photographs she has taken during her travels.</p> <a class="btn btn-default btn-sm" href="https://www.ensembl.info/2024/04/26/getting-to-know-us-swati-from-ensembl-genebuild/">Continue reading <i class="fa fa-angle-double-right"></i></a> </div> </article> <article itemscope itemtype="http://schema.org/Article" id="post-15366" class="post-15366 post type-post status-publish format-standard hentry category-04-training tag-bioinformatics tag-ensembl tag-ensembl-genomes tag-genomics tag-rest-api tag-vep"> <header class="entry-header"> <h2 class="entry-title" itemprop="name"> <a itemprop="url" href="https://www.ensembl.info/2024/04/05/free-ensembl-browser-and-rest-api-virtual-workshops-in-may-2/" title="Permalink to Free Ensembl Browser and REST API virtual workshops in May" rel="bookmark">Free Ensembl Browser and REST API virtual workshops in May</a> </h2> <div class="entry-meta"><span class="entry-date"><a href="https://www.ensembl.info/2024/04/05/free-ensembl-browser-and-rest-api-virtual-workshops-in-may-2/" rel="bookmark"><time class="entry-date published" datetime="2024-04-05T15:25:44+01:00" itemprop="datepublished">5th April 2024</time></a></span> by <span class="author vcard" itemscope itemprop="author" itemtype="http://schema.org/Person"><a class="url fn n" href="https://www.ensembl.info/author/aleena/" rel="author" itemprop="url"><span itemprop="name">Aleena Mushtaq</span></a></span><span class="sep">·</span><span class="comments-link"><span>Comments Off<span class="screen-reader-text"> on Free Ensembl Browser and REST API virtual workshops in May</span></span></span></div> </header> <div class="entry-content" itemprop="articleBody"> <p>Sign up for our virtual series covering the Ensembl genome browser and accessing Ensembl data via its REST API. Both workshops will be held from Tuesday to Thursday, with the browser course running from <strong>7th to 9th May</strong> and REST API from <strong>14th to 16th May 2024</strong> (14:00-17:00 BST). Read on for more information and how to register.</p> <a class="btn btn-default btn-sm" href="https://www.ensembl.info/2024/04/05/free-ensembl-browser-and-rest-api-virtual-workshops-in-may-2/">Continue reading <i class="fa fa-angle-double-right"></i></a> </div> </article> <article itemscope itemtype="http://schema.org/Article" id="post-15342" class="post-15342 post type-post status-publish format-standard hentry category-01-release tag-bioinformatics tag-ensembl tag-ensembl-genomes tag-gencode tag-plants tag-release tag-rest-api tag-variation tag-vep"> <header class="entry-header"> <h2 class="entry-title" itemprop="name"> <a itemprop="url" href="https://www.ensembl.info/2024/03/25/whats-coming-in-ensembl-release-112-ensembl-genomes-59/" title="Permalink to What’s coming in Ensembl release 112 / Ensembl Genomes 59?" rel="bookmark">What’s coming in Ensembl release 112 / Ensembl Genomes 59?</a> </h2> <div class="entry-meta"><span class="entry-date"><a href="https://www.ensembl.info/2024/03/25/whats-coming-in-ensembl-release-112-ensembl-genomes-59/" rel="bookmark"><time class="entry-date published" datetime="2024-03-25T16:00:13+00:00" itemprop="datepublished">25th March 2024</time></a></span> by <span class="author vcard" itemscope itemprop="author" itemtype="http://schema.org/Person"><a class="url fn n" href="https://www.ensembl.info/author/aleena/" rel="author" itemprop="url"><span itemprop="name">Aleena Mushtaq</span></a></span><span class="sep">·</span><span class="comments-link"><span>Comments Off<span class="screen-reader-text"> on What’s coming in Ensembl release 112 / Ensembl Genomes 59?</span></span></span></div> </header> <div class="entry-content" itemprop="articleBody"> <p>Ensembl 112 and Ensembl Genomes 59 are expected in April 2024. Check out what we’re up to, although we can’t guarantee everything listed here will make it into the final release.</p> <a class="btn btn-default btn-sm" href="https://www.ensembl.info/2024/03/25/whats-coming-in-ensembl-release-112-ensembl-genomes-59/">Continue reading <i class="fa fa-angle-double-right"></i></a> </div> </article> <article itemscope itemtype="http://schema.org/Article" id="post-15302" class="post-15302 post type-post status-publish format-standard hentry category-05-community tag-bioinformatician tag-bioinformatics tag-career tag-ensembl tag-regulation tag-teamsembl"> <header class="entry-header"> <h2 class="entry-title" itemprop="name"> <a itemprop="url" href="https://www.ensembl.info/2024/03/01/getting-to-know-us-gabriela-from-ensembl-regulation/" title="Permalink to Getting to know us: Gabriela from Ensembl Regulation" rel="bookmark">Getting to know us: Gabriela from Ensembl Regulation</a> </h2> <div class="entry-meta"><span class="entry-date"><a href="https://www.ensembl.info/2024/03/01/getting-to-know-us-gabriela-from-ensembl-regulation/" rel="bookmark"><time class="entry-date published" datetime="2024-03-01T10:50:01+00:00" itemprop="datepublished">1st March 2024</time></a></span> by <span class="author vcard" itemscope itemprop="author" itemtype="http://schema.org/Person"><a class="url fn n" href="https://www.ensembl.info/author/lpmirabueno/" rel="author" itemprop="url"><span itemprop="name">Louisse Paola Mirabueno</span></a></span><span class="sep">·</span><span class="comments-link"><span>Comments Off<span class="screen-reader-text"> on Getting to know us: Gabriela from Ensembl Regulation</span></span></span></div> </header> <div class="entry-content" itemprop="articleBody"> <p>In February, we talked to <a href="https://www.ebi.ac.uk/people/person/gabriela-merino" target="_blank" rel="noreferrer noopener">Gabriela Alejandra Merino</a> from the Ensembl Regulation team. Before joining <a href="https://ebi.ac.uk/" target="_blank" rel="noreferrer noopener">EMBL-EBI</a>, Gabriela worked on protein function prediction. She is now involved in producing regulatory annotations for Ensembl. Outside of work, Gabriela is very active and participates in swimming competitions. Read on to get to know Gabriela and her work.</p> <a class="btn btn-default btn-sm" href="https://www.ensembl.info/2024/03/01/getting-to-know-us-gabriela-from-ensembl-regulation/">Continue reading <i class="fa fa-angle-double-right"></i></a> </div> </article> <article itemscope itemtype="http://schema.org/Article" id="post-15264" class="post-15264 post type-post status-publish format-standard hentry category-05-community tag-applications tag-bioinformatician tag-bioinformatics tag-career tag-developer tag-ensembl tag-software tag-teamsembl"> <header class="entry-header"> <h2 class="entry-title" itemprop="name"> <a itemprop="url" href="https://www.ensembl.info/2024/02/02/getting-to-know-us-bilal-from-ensembl-applications/" title="Permalink to Getting to know us: Bilal from Ensembl Applications" rel="bookmark">Getting to know us: Bilal from Ensembl Applications</a> </h2> <div class="entry-meta"><span class="entry-date"><a href="https://www.ensembl.info/2024/02/02/getting-to-know-us-bilal-from-ensembl-applications/" rel="bookmark"><time class="entry-date published" datetime="2024-02-02T10:59:03+00:00" itemprop="datepublished">2nd February 2024</time></a></span> by <span class="author vcard" itemscope itemprop="author" itemtype="http://schema.org/Person"><a class="url fn n" href="https://www.ensembl.info/author/lpmirabueno/" rel="author" itemprop="url"><span itemprop="name">Louisse Paola Mirabueno</span></a></span><span class="sep">·</span><span class="comments-link"><span>Comments Off<span class="screen-reader-text"> on Getting to know us: Bilal from Ensembl Applications</span></span></span></div> </header> <div class="entry-content" itemprop="articleBody"> <p>In January, we talked to <a href="https://www.ebi.ac.uk/people/person/bilal-el-houdaigui" data-type="link" data-id="https://www.ebi.ac.uk/people/person/bilal-el-houdaigui" target="_blank" rel="noreferrer noopener">Bilal El Houdaigui</a> from the Ensembl Applications team. He has told us all about the projects he is currently involved in, what his typical day looks like and advice he would give his younger self if he could meet him. Continue reading to get to know our colleague Bilal!</p> <a class="btn btn-default btn-sm" href="https://www.ensembl.info/2024/02/02/getting-to-know-us-bilal-from-ensembl-applications/">Continue reading <i class="fa fa-angle-double-right"></i></a> </div> </article> <article itemscope itemtype="http://schema.org/Article" id="post-15240" class="post-15240 post type-post status-publish format-standard hentry category-02-ensembl-vep tag-custom-annotation tag-vep"> <header class="entry-header"> <h2 class="entry-title" itemprop="name"> <a itemprop="url" href="https://www.ensembl.info/2024/01/26/cool-stuff-the-ensembl-vep-can-do-new-options-for-custom-annotation/" title="Permalink to Cool stuff the Ensembl VEP can do: new options for custom annotation" rel="bookmark">Cool stuff the Ensembl VEP can do: new options for custom annotation</a> </h2> <div class="entry-meta"><span class="entry-date"><a href="https://www.ensembl.info/2024/01/26/cool-stuff-the-ensembl-vep-can-do-new-options-for-custom-annotation/" rel="bookmark"><time class="entry-date published" datetime="2024-01-26T13:32:22+00:00" itemprop="datepublished">26th January 2024</time></a></span> by <span class="author vcard" itemscope itemprop="author" itemtype="http://schema.org/Person"><a class="url fn n" href="https://www.ensembl.info/author/bmoore/" rel="author" itemprop="url"><span itemprop="name">Ben (Outreach)</span></a></span><span class="sep">·</span><span class="comments-link"><span>Comments Off<span class="screen-reader-text"> on Cool stuff the Ensembl VEP can do: new options for custom annotation</span></span></span></div> </header> <div class="entry-content" itemprop="articleBody"> <p>During the latest Ensembl VEP releases, we have been enhancing the options available to you when you annotate variants against your own reference data as ‘custom annotation’. Here we detail some of those improvements.</p> <a class="btn btn-default btn-sm" href="https://www.ensembl.info/2024/01/26/cool-stuff-the-ensembl-vep-can-do-new-options-for-custom-annotation/">Continue reading <i class="fa fa-angle-double-right"></i></a> </div> </article> <article itemscope itemtype="http://schema.org/Article" id="post-15211" class="post-15211 post type-post status-publish format-standard hentry category-07-status tag-asia-mirror tag-ensembl tag-genomics"> <header class="entry-header"> <h2 class="entry-title" itemprop="name"> <a itemprop="url" href="https://www.ensembl.info/2024/01/18/downtime-of-the-ensembl-search-and-asia-mirror/" title="Permalink to Downtime of Ensembl search" rel="bookmark">Downtime of Ensembl search</a> </h2> <div class="entry-meta"><span class="entry-date"><a href="https://www.ensembl.info/2024/01/18/downtime-of-the-ensembl-search-and-asia-mirror/" rel="bookmark"><time class="entry-date published" datetime="2024-01-18T12:14:17+00:00" itemprop="datepublished">18th January 2024</time></a></span> by <span class="author vcard" itemscope itemprop="author" itemtype="http://schema.org/Person"><a class="url fn n" href="https://www.ensembl.info/author/aleena/" rel="author" itemprop="url"><span itemprop="name">Aleena Mushtaq</span></a></span><span class="sep">·</span><span class="comments-link"><a href="https://www.ensembl.info/2024/01/18/downtime-of-the-ensembl-search-and-asia-mirror/#comments" itemprop="discussionUrl">13 Comments</a></span></div> </header> <div class="entry-content" itemprop="articleBody"> <p>We are experiencing issues with the <a href="https://www.ensembl.org/index.html" data-type="link" data-id="https://www.ensembl.org/index.html" target="_blank" rel="noreferrer noopener">Ensembl</a> search system due to unforeseen errors. The search function is currently unavailable and this may affect other functions such as the loading of variants on genomic sequences. To search for entries in Ensembl, you can do one of the following:</p> <ol> <li>Use the EMBL-EBI website: go to <a href="https://www.ebi.ac.uk/ebisearch" target="_blank" rel="noreferrer noopener">https://www.ebi.ac.uk/ebisearch</a> and enter your search terms into the text box. E.g. if you want to search for human <em>BRCA2</em> in Ensembl, enter <code>Ensembl human BRCA2</code> into the search text box.</li> <li>Use Google: to search for entries in Ensembl via Google, go to <a href="https://google.com/" target="_blank" rel="noreferrer noopener">www.google.com</a> and enter <code>site:https://www.ensembl.org [search terms]</code>. E.g. if you want to search for human <em>BRCA2</em>, enter <code>site:https://www.ensembl.org human BRCA2</code><strong><em> </em></strong>into Google.</li> </ol> <p>We are working to fix this issue as quickly as possible, although a timeline is still unclear for the work to be completed. Services will be resumed as soon as the issue has been resolved. If you have any questions, please contact us on the <a href="https://www.ensembl.org/Help/Contact" target="_blank" rel="noreferrer noopener">Ensembl Helpdesk</a>.</p> </div> </article> <article itemscope itemtype="http://schema.org/Article" id="post-15172" class="post-15172 post type-post status-publish format-standard hentry category-01-release tag-assembly tag-ensembl tag-ensembl-111 tag-ensembl-genomes tag-ensembl-genomes-58 tag-grch37 tag-metazoa tag-plants tag-plugin tag-variation tag-vep"> <header class="entry-header"> <h2 class="entry-title" itemprop="name"> <a itemprop="url" href="https://www.ensembl.info/2024/01/11/ensembl-111-has-been-released/" title="Permalink to Ensembl 111 has been released!" rel="bookmark">Ensembl 111 has been released!</a> </h2> <div class="entry-meta"><span class="entry-date"><a href="https://www.ensembl.info/2024/01/11/ensembl-111-has-been-released/" rel="bookmark"><time class="entry-date published" datetime="2024-01-11T13:55:14+00:00" itemprop="datepublished">11th January 2024</time></a></span> by <span class="author vcard" itemscope itemprop="author" itemtype="http://schema.org/Person"><a class="url fn n" href="https://www.ensembl.info/author/bmoore/" rel="author" itemprop="url"><span itemprop="name">Ben (Outreach)</span></a></span><span class="sep">·</span><span class="comments-link"><a href="https://www.ensembl.info/2024/01/11/ensembl-111-has-been-released/#comments" itemprop="discussionUrl">6 Comments</a></span></div> </header> <div class="entry-content" itemprop="articleBody"> <p>We are pleased to announce the release of Ensembl 111, and the corresponding release of Ensembl Genomes 58 featuring a range of new Ensembl VEP plugins and tonnes of new and updated agricultural, fish, plant and metazoa species!</p> <p>Genome assemblies and annotation for many new species are also being continuously added to the <a href="https://rapid.ensembl.org/index.html" target="_blank" rel="noreferrer noopener">Ensembl Rapid Release genome browser</a>.</p> <a class="btn btn-default btn-sm" href="https://www.ensembl.info/2024/01/11/ensembl-111-has-been-released/">Continue reading <i class="fa fa-angle-double-right"></i></a> </div> </article> <article itemscope itemtype="http://schema.org/Article" id="post-15163" class="post-15163 post type-post status-publish format-standard hentry category-07-status tag-biomart tag-blast tag-downtime tag-service-status tag-vep"> <header class="entry-header"> <h2 class="entry-title" itemprop="name"> <a itemprop="url" href="https://www.ensembl.info/2024/01/03/downtime-of-ensembl-tools-4/" title="Permalink to Downtime of Ensembl tools" rel="bookmark">Downtime of Ensembl tools</a> </h2> <div class="entry-meta"><span class="entry-date"><a href="https://www.ensembl.info/2024/01/03/downtime-of-ensembl-tools-4/" rel="bookmark"><time class="entry-date published" datetime="2024-01-03T10:10:09+00:00" itemprop="datepublished">3rd January 2024</time></a></span> by <span class="author vcard" itemscope itemprop="author" itemtype="http://schema.org/Person"><a class="url fn n" href="https://www.ensembl.info/author/bmoore/" rel="author" itemprop="url"><span itemprop="name">Ben (Outreach)</span></a></span><span class="sep">·</span><span class="comments-link"><span>Comments Off<span class="screen-reader-text"> on Downtime of Ensembl tools</span></span></span></div> </header> <div class="entry-content" itemprop="articleBody"> <p>Due to scheduled maintenance work, Ensembl tools will be temporarily unavailable on Tuesday 6th February 2024 between 11:30 and 13:00 (GMT).</p> <a class="btn btn-default btn-sm" href="https://www.ensembl.info/2024/01/03/downtime-of-ensembl-tools-4/">Continue reading <i class="fa fa-angle-double-right"></i></a> </div> </article> <nav class="navigation pagination" aria-label="Posts"> <h2 class="screen-reader-text">Posts navigation</h2> <div class="nav-links"><a class="prev page-numbers" href="https://www.ensembl.info/"><i class="fa fa-chevron-left"></i></a> <a class="page-numbers" href="https://www.ensembl.info/">1</a> <span aria-current="page" class="page-numbers current">2</span> <a class="page-numbers" href="https://www.ensembl.info/page/3/">3</a> <span class="page-numbers dots">…</span> <a class="page-numbers" href="https://www.ensembl.info/page/69/">69</a> <a class="next page-numbers" href="https://www.ensembl.info/page/3/"><i class="fa fa-chevron-right"></i></a></div> </nav> </div> <footer class="site-info" itemscope itemtype="http://schema.org/WPFooter"> <a href="http://wordpress.org/" title="Semantic Personal Publishing Platform">Proudly powered by WordPress</a>. 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