CINXE.COM

<!DOCTYPE html>  <html lang="en"> <head> <meta charset="utf-8"> <meta http-equiv="content-type" content="text/html; charset=utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1.0"> <meta name="description" content="AmiGO 2"> <meta name="author" content="Gene Ontology Consortium">  <link rel="shortcut icon" href="https://amigo.geneontology.org/static/images/go-logo-favicon.ico"> <link rel="icon" href="https://amigo.geneontology.org/static/images/go-logo-favicon.ico"> <title>AmiGO 2: Search Templates</title>     <link rel="stylesheet" type="text/css" href="https://amigo.geneontology.org/static/css/bootstrap.min.css"> <link rel="stylesheet" type="text/css" href="https://amigo.geneontology.org/static/js/com/jquery/css/jqamigo-1.10.3/jquery-ui-1.10.3.custom.min.css"> <link rel="stylesheet" type="text/css" href="https://amigo.geneontology.org/static/css/amigo.css"> <link rel="stylesheet" type="text/css" href="https://amigo.geneontology.org/static/css/bbop.css"> <script type="text/javascript">var global_galaxy_url = "https://galaxy.berkeleybop.org/tool_runner?tool_id=general";</script> <script type="text/javascript" src="https://amigo.geneontology.org/static/js/com/jquery-1.9.1.min.js"></script> <script type="text/javascript" src="https://amigo.geneontology.org/static/js/com/bootstrap.min.js"></script> <script type="text/javascript" src="https://amigo.geneontology.org/static/js/com/jquery-ui-1.10.3.custom.min.js"></script> <script type="text/javascript" src="https://amigo.geneontology.org/static/staging/GeneralSearchForwarding.js"></script> <script type="text/javascript" src="https://amigo.geneontology.org/static/staging/Grebe.js"></script> <script type="text/javascript">var global_grebe_questions = [{"group_label":"Term annotations"},{"field_translations":[{"widget_personality":"ontology","field_filter":"isa_partof_closure","field_id":"q2f1","widget_options":"bbop_term_ac","widget_document":"ontology_class"}],"question":"<span id=\"q2\">What are the direct and indirect annotations to term <input id=\"q2f1\" type=\"text\" placeholder=\"\" class=\"form-control amigo-grebe-tooltip\" title=\"Hint: add a space after completing a word to narrow the search.\" style=\"width: 10em;\">?   <button id=\"q2-action\" type=\"button\" class=\"amigo-grebe-action btn btn-primary\" title=\"Jump to AmiGO 2 Search\" alt=\"[search]\">Go »</button></span>","question_id":"q2","personality":"annotation","document_category":"annotation"},{"question_id":"q4","question":"<span id=\"q4\">What are the direct and indirect annotations for organism (scientific name) <input id=\"q4f1\" type=\"text\" placeholder=\"\" class=\"form-control amigo-grebe-tooltip\" title=\"Hint: add a space after completing a word to narrow the search.\" style=\"width: 10em;\"> to term <input id=\"q4f2\" type=\"text\" placeholder=\"\" class=\"form-control amigo-grebe-tooltip\" title=\"Hint: add a space after completing a word to narrow the search.\" style=\"width: 10em;\">?   <button id=\"q4-action\" type=\"button\" class=\"amigo-grebe-action btn btn-primary\" title=\"Jump to AmiGO 2 Search\" alt=\"[search]\">Go »</button></span>","personality":"annotation","field_translations":[{"widget_document":"ontology_class","widget_filters":["source:ncbi_taxonomy"],"field_id":"q4f1","widget_options":"bbop_term_ac","field_filter":"taxon_closure","widget_personality":"ontology"},{"field_filter":"isa_partof_closure","widget_personality":"ontology","widget_document":"ontology_class","field_id":"q4f2","widget_options":"bbop_term_ac"}],"document_category":"annotation"},{"question_pins":[{"field_value":"experimental evidence","field_name":"evidence_type_closure"}],"document_category":"annotation","personality":"annotation","question":"<span id=\"q9\">What are the <em>experimental</em> direct and indirect annotations for organism (scientific name) <input id=\"q9f1\" type=\"text\" placeholder=\"\" class=\"form-control amigo-grebe-tooltip\" title=\"Hint: add a space after completing a word to narrow the search.\" style=\"width: 10em;\">?   <button id=\"q9-action\" type=\"button\" class=\"amigo-grebe-action btn btn-primary\" title=\"Jump to AmiGO 2 Search\" alt=\"[search]\">Go »</button></span>","question_id":"q9","field_translations":[{"widget_personality":"ontology","field_filter":"taxon_closure","widget_options":"bbop_term_ac","field_id":"q9f1","widget_document":"ontology_class","widget_filters":["source:ncbi_taxonomy"]}]},{"group_label":"Gene product annotations"},{"document_category":"annotation","field_translations":[{"widget_options":"bioentity","field_id":"q5f1","widget_document":"bioentity","widget_personality":"bioentity","field_filter":"bioentity"}],"question":"<span id=\"q5\">What are all the annotations for gene product <input id=\"q5f1\" type=\"text\" placeholder=\"\" class=\"form-control amigo-grebe-tooltip\" title=\"Hint: add a space after completing a word to narrow the search.\" style=\"width: 10em;\">   <button id=\"q5-action\" type=\"button\" class=\"amigo-grebe-action btn btn-primary\" title=\"Jump to AmiGO 2 Search\" alt=\"[search]\">Go »</button></span>","question_id":"q5","personality":"annotation"},{"group_label":"Gene products associated with terms"},{"question":"<span id=\"q6\">What are the gene products annotated to term <input id=\"q6f1\" type=\"text\" placeholder=\"\" class=\"form-control amigo-grebe-tooltip\" title=\"Hint: add a space after completing a word to narrow the search.\" style=\"width: 10em;\"> but <em>not</em> term <input id=\"q6f2\" type=\"text\" placeholder=\"\" class=\"form-control amigo-grebe-tooltip\" title=\"Hint: add a space after completing a word to narrow the search.\" style=\"width: 10em;\">?   <button id=\"q6-action\" type=\"button\" class=\"amigo-grebe-action btn btn-primary\" title=\"Jump to AmiGO 2 Search\" alt=\"[search]\">Go »</button></span>","question_id":"q6","personality":"bioentity","field_translations":[{"widget_document":"ontology_class","field_id":"q6f1","widget_options":"bbop_term_ac","field_filter":"isa_partof_closure","widget_personality":"ontology"},{"widget_document":"ontology_class","widget_options":"bbop_term_ac","field_id":"q6f2","field_filter":"-isa_partof_closure","widget_personality":"ontology"}],"document_category":"bioentity"},{"field_translations":[{"widget_personality":"ontology","field_filter":"isa_partof_closure","field_id":"q7f1","widget_options":"bbop_term_ac","widget_document":"ontology_class"},{"widget_personality":"ontology","field_filter":"isa_partof_closure","widget_options":"bbop_term_ac","field_id":"q7f2","widget_document":"ontology_class"}],"question":"<span id=\"q7\">What are the gene products annotated to term <input id=\"q7f1\" type=\"text\" placeholder=\"\" class=\"form-control amigo-grebe-tooltip\" title=\"Hint: add a space after completing a word to narrow the search.\" style=\"width: 10em;\"> <em>and</em> term <input id=\"q7f2\" type=\"text\" placeholder=\"\" class=\"form-control amigo-grebe-tooltip\" title=\"Hint: add a space after completing a word to narrow the search.\" style=\"width: 10em;\">?   <button id=\"q7-action\" type=\"button\" class=\"amigo-grebe-action btn btn-primary\" title=\"Jump to AmiGO 2 Search\" alt=\"[search]\">Go »</button></span>","question_id":"q7","personality":"bioentity","document_category":"bioentity"},{"group_label":"Protein family"},{"document_category":"annotation","field_translations":[{"widget_document":"family","widget_options":"bbop_family","field_id":"q8f1","field_filter":"panther_family","widget_personality":"family"}],"question_id":"q8","question":"<span id=\"q8\">What are the annotations associated with the protein family <input id=\"q8f1\" type=\"text\" placeholder=\"\" class=\"form-control amigo-grebe-tooltip\" title=\"Hint: add a space after completing a word to narrow the search.\" style=\"width: 10em;\">?   <button id=\"q8-action\" type=\"button\" class=\"amigo-grebe-action btn btn-primary\" title=\"Jump to AmiGO 2 Search\" alt=\"[search]\">Go »</button></span>","personality":"annotation"},{"group_label":"Curator tools"},{"document_category":"annotation","personality":"annotation","question":"<span id=\"q1\">What are the direct annotations to term <input id=\"q1f1\" type=\"text\" placeholder=\"\" class=\"form-control amigo-grebe-tooltip\" title=\"Hint: add a space after completing a word to narrow the search.\" style=\"width: 10em;\">?   <button id=\"q1-action\" type=\"button\" class=\"amigo-grebe-action btn btn-primary\" title=\"Jump to AmiGO 2 Search\" alt=\"[search]\">Go »</button></span>","question_id":"q1","field_translations":[{"field_id":"q1f1","widget_options":"general","widget_filters":["category:ontology_class"],"widget_document":"general","widget_personality":"general","field_filter":"annotation_class"}]},{"question_id":"q3","question":"<span id=\"q3\">What are the direct annotations for organism (scientific name) <input id=\"q3f1\" type=\"text\" placeholder=\"\" class=\"form-control amigo-grebe-tooltip\" title=\"Hint: add a space after completing a word to narrow the search.\" style=\"width: 10em;\"> to term <input id=\"q3f2\" type=\"text\" placeholder=\"\" class=\"form-control amigo-grebe-tooltip\" title=\"Hint: add a space after completing a word to narrow the search.\" style=\"width: 10em;\">?   <button id=\"q3-action\" type=\"button\" class=\"amigo-grebe-action btn btn-primary\" title=\"Jump to AmiGO 2 Search\" alt=\"[search]\">Go »</button></span>","personality":"annotation","field_translations":[{"widget_document":"ontology_class","widget_filters":["source:ncbi_taxonomy"],"widget_options":"bbop_term_ac","field_id":"q3f1","field_filter":"taxon_closure","widget_personality":"ontology"},{"widget_document":"ontology_class","field_id":"q3f2","widget_options":"bbop_term_ac","field_filter":"annotation_class","widget_personality":"ontology"}],"document_category":"annotation"}];</script>  </head>   <body>         <div class="navbar navbar-default navbar-static-top"> <div class="container">  <div class="navbar-header"> <button type="button" class="navbar-toggle" data-toggle="collapse" data-target=".navbar-collapse"> <span class="icon-bar"></span> <span class="icon-bar"></span> <span class="icon-bar"></span> </button> <a class="amigo-logo-img-link" href="http://geneontology.org"><img class="amigo-logo-img" src="https://amigo.geneontology.org/static/images/go-logo-icon.small.png" alt="GO logo" title="Gene Ontology front page"></a> <a class="navbar-brand" href="https://amigo.geneontology.org/amigo/landing">AmiGO 2</a> </div> <div class="navbar-collapse collapse"> <ul class="nav navbar-nav">  <li><a href="https://amigo.geneontology.org/amigo/landing" title="The AmiGO 2 landing page.">Home</a></li>  <li class="dropdown"> <a href="#" class="dropdown-toggle" data-toggle="dropdown">Search <b class="caret"></b></a> <ul class="dropdown-menu"> <li><a href="https://amigo.geneontology.org/amigo/search/annotation" title="Associations between GO terms and genes or gene products.">Annotations</a></li>     <li><a href="https://amigo.geneontology.org/amigo/search/ontology" title="Gene Ontology Term, Synonym, or Definition.">Ontology</a></li>     <li><a href="https://amigo.geneontology.org/amigo/search/bioentity" title="Genes and gene products associated with GO terms.">Genes and gene products</a></li>     </ul> </li>  <li><a href="https://amigo.geneontology.org/amigo/dd_browse" title="Browse GO terms and view annotation counts.">Browse</a></li>  <li><a href="https://amigo.geneontology.org/amigo/software_list" title="More tools to explore the Gene Ontology">Tools & Resources</a></li>  <li><a href="http://wiki.geneontology.org/index.php/AmiGO_2_Manual:_Search_Templates" title="Help for 'Search Templates'">Help</a></li>  <li><a href="http://wiki.geneontology.org/index.php/AmiGO_2:_Feedback" title="Give feedback on AmiGO 2">Feedback</a></li>  <li><a href="http://wiki.geneontology.org/index.php/AmiGO_2" title="About AmiGO 2">About</a></li> </ul>   <form action="https://amigo.geneontology.org/amigo/medial_search" id="query-form" class="navbar-form navbar-right" role="search" method="GET"> <div class="form-group"> <input type="text" title="Hint: add a space after completing a word to narrow the search." class="form-control bbop-js-tooltip" name="q" placeholder="Quick search" value="" id="gsf-query"> </div> <button type="submit" title="Search for annotations with the inputted text." class="btn btn-default">Search</button>   <a href="http://wiki.geneontology.org/index.php/AmiGO_2_Manual:_Quick_Search" title="More information on Quick Search" class=""><span class="glyphicon glyphicon-question-sign"></span> </a>   </form>        </div> </div> </div>   <div class="container amigo-ui-wide-max">      <noscript> <div class="panel panel-warning"> <div class="panel-heading"> <h3 class="panel-title">Notice</h3> </div> <div class="panel-body"> <p> Some functionality on this page depends on JavaScript. To fully use the features of AmiGO 2, enable JavaScript in your browser and reload from the landing page. </p> </div> </div> </noscript>   <div class="panel panel-default"> <div class="panel-heading"> <h4 class="panel-title"> <a class="accordion-toggle" data-toggle="collapse" title="Click to display more information." href="#info_header">Information about Search Templates <span class="glyphicon glyphicon-question-sign"></span> </a> </h4> </div> <div id="info_header" class="panel-collapse collapse"> <div class="panel-body">  <p> Search Templates are a simple fill-in-the-blank wizard interface to AmiGO 2 users that are either unfamiliar with how to search in AmiGO 2 or for users that want to simplify common queries. To use, fill in the necessary blank columns with IDs, selecting from the autocomplete results; hit the "go" icon at the end of the question when done. </p> <p> For more information, please see the Search Templates <a href="http://wiki.geneontology.org/index.php/AmiGO_2_Manual:_Search_Templates">manual page</a>. </p>  </div> </div> </div>   <h2>Term annotations</h2> <ul class="list-group"> <li class="list-group-item odd_row"> <div class="form-inline"> <div class="form-group"> <span id="q2">What are the direct and indirect annotations to term <input id="q2f1" type="text" placeholder="" class="form-control amigo-grebe-tooltip" title="Hint: add a space after completing a word to narrow the search." style="width: 10em;">?   <button id="q2-action" type="button" class="amigo-grebe-action btn btn-primary" title="Jump to AmiGO 2 Search" alt="[search]">Go »</button></span> </div> </div> </li> <li class="list-group-item even_row"> <div class="form-inline"> <div class="form-group"> <span id="q4">What are the direct and indirect annotations for organism (scientific name) <input id="q4f1" type="text" placeholder="" class="form-control amigo-grebe-tooltip" title="Hint: add a space after completing a word to narrow the search." style="width: 10em;"> to term <input id="q4f2" type="text" placeholder="" class="form-control amigo-grebe-tooltip" title="Hint: add a space after completing a word to narrow the search." style="width: 10em;">?   <button id="q4-action" type="button" class="amigo-grebe-action btn btn-primary" title="Jump to AmiGO 2 Search" alt="[search]">Go »</button></span> </div> </div> </li> <li class="list-group-item odd_row"> <div class="form-inline"> <div class="form-group"> <span id="q9">What are the <em>experimental</em> direct and indirect annotations for organism (scientific name) <input id="q9f1" type="text" placeholder="" class="form-control amigo-grebe-tooltip" title="Hint: add a space after completing a word to narrow the search." style="width: 10em;">?   <button id="q9-action" type="button" class="amigo-grebe-action btn btn-primary" title="Jump to AmiGO 2 Search" alt="[search]">Go »</button></span> </div> </div> </li> </ul>   <h2>Gene product annotations</h2> <ul class="list-group"> <li class="list-group-item odd_row"> <div class="form-inline"> <div class="form-group"> <span id="q5">What are all the annotations for gene product <input id="q5f1" type="text" placeholder="" class="form-control amigo-grebe-tooltip" title="Hint: add a space after completing a word to narrow the search." style="width: 10em;">   <button id="q5-action" type="button" class="amigo-grebe-action btn btn-primary" title="Jump to AmiGO 2 Search" alt="[search]">Go »</button></span> </div> </div> </li> </ul>   <h2>Gene products associated with terms</h2> <ul class="list-group"> <li class="list-group-item odd_row"> <div class="form-inline"> <div class="form-group"> <span id="q6">What are the gene products annotated to term <input id="q6f1" type="text" placeholder="" class="form-control amigo-grebe-tooltip" title="Hint: add a space after completing a word to narrow the search." style="width: 10em;"> but <em>not</em> term <input id="q6f2" type="text" placeholder="" class="form-control amigo-grebe-tooltip" title="Hint: add a space after completing a word to narrow the search." style="width: 10em;">?   <button id="q6-action" type="button" class="amigo-grebe-action btn btn-primary" title="Jump to AmiGO 2 Search" alt="[search]">Go »</button></span> </div> </div> </li> <li class="list-group-item even_row"> <div class="form-inline"> <div class="form-group"> <span id="q7">What are the gene products annotated to term <input id="q7f1" type="text" placeholder="" class="form-control amigo-grebe-tooltip" title="Hint: add a space after completing a word to narrow the search." style="width: 10em;"> <em>and</em> term <input id="q7f2" type="text" placeholder="" class="form-control amigo-grebe-tooltip" title="Hint: add a space after completing a word to narrow the search." style="width: 10em;">?   <button id="q7-action" type="button" class="amigo-grebe-action btn btn-primary" title="Jump to AmiGO 2 Search" alt="[search]">Go »</button></span> </div> </div> </li> </ul>   <h2>Protein family</h2> <ul class="list-group"> <li class="list-group-item odd_row"> <div class="form-inline"> <div class="form-group"> <span id="q8">What are the annotations associated with the protein family <input id="q8f1" type="text" placeholder="" class="form-control amigo-grebe-tooltip" title="Hint: add a space after completing a word to narrow the search." style="width: 10em;">?   <button id="q8-action" type="button" class="amigo-grebe-action btn btn-primary" title="Jump to AmiGO 2 Search" alt="[search]">Go »</button></span> </div> </div> </li> </ul>   <h2>Curator tools</h2> <ul class="list-group"> <li class="list-group-item odd_row"> <div class="form-inline"> <div class="form-group"> <span id="q1">What are the direct annotations to term <input id="q1f1" type="text" placeholder="" class="form-control amigo-grebe-tooltip" title="Hint: add a space after completing a word to narrow the search." style="width: 10em;">?   <button id="q1-action" type="button" class="amigo-grebe-action btn btn-primary" title="Jump to AmiGO 2 Search" alt="[search]">Go »</button></span> </div> </div> </li> <li class="list-group-item even_row"> <div class="form-inline"> <div class="form-group"> <span id="q3">What are the direct annotations for organism (scientific name) <input id="q3f1" type="text" placeholder="" class="form-control amigo-grebe-tooltip" title="Hint: add a space after completing a word to narrow the search." style="width: 10em;"> to term <input id="q3f2" type="text" placeholder="" class="form-control amigo-grebe-tooltip" title="Hint: add a space after completing a word to narrow the search." style="width: 10em;">?   <button id="q3-action" type="button" class="amigo-grebe-action btn btn-primary" title="Jump to AmiGO 2 Search" alt="[search]">Go »</button></span> </div> </div> </li> </ul>  <div class="text-center">    </div>      <hr> <footer> <div class="row">  <div class="col-md-4"> <a href="https://geneontology.org/page/go-citation-policy#GO_Data" title="How to cite AmiGO data">Cite this data</a> • <a href="http://geneontology.org/page/use-and-license" title="Terms of use for the GO project">Terms of use</a> • <a href="http://help.geneontology.org" title="Contact the GO helpdesk">GO helpdesk</a> <br /> Copyright © 1999-2025 <a href="https://geneontology.org/" title="Gene Ontology home page">the Gene Ontology</a> </div>  <div class="col-md-4" style="text-align: center;">  </div>  <div class="col-md-4" style="text-align: right;"> <a href="https://doi.org/10.5281/zenodo.14861039"> <img src="https://zenodo.org/badge/DOI/10.5281/zenodo.14861039.svg" alt="DOI"> </a> <br /> Last file loaded on 2025-02-08, see <a href="https://amigo.geneontology.org/amigo/load_details">full details</a> <br /> AmiGO 2 version: <a title="View release notes for the current version" href="https://wiki.geneontology.org/index.php/AmiGO_2_0">2.5.17</a> (amigo-production) </div> </div> </footer>   <script async src="https://www.googletagmanager.com/gtag/js?id=G-SW9EH26WXM"></script> <script> window.dataLayer = window.dataLayer || []; function gtag(){dataLayer.push(arguments);} gtag('js', new Date()); gtag('config', 'G-SW9EH26WXM'); </script>   </div> </body> </html>