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flex-wrap"> <div class="flex flex-row pb-6"> <h1 class="title">PP_000RE4V.3</h1> </div> <div class="pt-2"> <div class="dropdown dropdown-hover hidden sm:inline-block"><label tabindex="0" class="btn btn-sm btn-outline py-1"><a href="/seq/PP_000RE4V.3/versions" class="text-sm">All versions</a><svg viewBox="0 0 24 24" width="1.2em" height="1.2em"><path fill="currentColor" d="M7.41 8.59L12 13.17l4.59-4.58L18 10l-6 6l-6-6z"></path></svg></label><ul tabindex="0" class="dropdown-content z-[1] menu p-1 shadow bg-base-100 rounded-box absolute top-full left-0 text-sm"><li><a href="/seq/PP_000RE4V.1">PP_000RE4V.1<p class="font-bold text-red-500">(<!-- -->Revised<!-- -->)</p></a></li><li><a href="/seq/PP_000RE4V.2">PP_000RE4V.2<p class="font-bold text-red-500">(<!-- -->Revised<!-- -->)</p></a></li><li><a href="/seq/PP_000RE4V.3">PP_000RE4V.3<p class="font-bold text-green-500">(<!-- -->Latest version<!-- -->)</p></a></li></ul></div><div class="sm:hidden inline-block"><a href="/seq/PP_000RE4V.3/versions" class="text-xl"><svg viewBox="0 0 24 24" width="1.2em" height="1.2em"><path fill="currentColor" d="M13 3a9 9 0 0 0-9 9H1l3.89 3.89l.07.14L9 12H6c0-3.87 3.13-7 7-7s7 3.13 7 7s-3.13 7-7 7c-1.93 0-3.68-.79-4.94-2.06l-1.42 1.42A8.95 8.95 0 0 0 13 21a9 9 0 0 0 0-18m-1 5v5l4.28 2.54l.72-1.21l-3.5-2.08V8z"></path></svg></a></div> <div class="inline-block dropdown dropdown-hover dropdown-end"> <label tabindex="0" class="hidden sm:block py-1 text-primary-700 cursor-pointer"> Download <span class="text-primary"> <svg viewBox="0 0 40 40" width="1.2em" height="1.2em" class="inline-block -mt-1 ml-1 h-4 w-4"><path fill="currentColor" d="M4.659 11.833h30.682L20 32.167z"></path></svg> </span> </label> <span tabindex="0" class="sm:hidden inline text-xl cursor-pointer"> <svg viewBox="0 0 24 24" width="1.2em" height="1.2em"><path fill="currentColor" d="M5 20h14v-2H5zM19 9h-4V3H9v6H5l7 7z"></path></svg> </span> <ul class="dropdown-content z-20 menu p-1 shadow bg-base-100 rounded-btn top-full -left-44 sm:-left-24 w-52"> <li> <a href="/seq/PP_000RE4V.3.fa?download" class="block px-4 py-2 outlineButtonDropdownItem"> Download FASTA </a> </li> <li> <a href="/seq/PP_000RE4V.3.tsv?download" class="block px-4 py-2 outlineButtonDropdownItem"> Download metadata TSV </a> </li> </ul> </div> </div> </div> <astro-island uid="ZK4Qk6" prefix="r2" component-url="/_astro/SequenceDataUI.CbfdLVnu.js" component-export="SequenceDataUI" renderer-url="/_astro/client.DAwOWTUB.js" props="{"tableData":[1,[[0,{"label":[0,"Submission ID"],"name":[0,"submissionId"],"customDisplay":[0],"value":[0,"PP067063.1.L/PP067076.1.M/PP067048.1.S"],"header":[0,"Submission details"],"type":[0,{"kind":[0,"metadata"],"metadataType":[0,"string"]}]}],[0,{"label":[0,"Submitting group"],"name":[0,"groupName"],"customDisplay":[0,{"type":[0,"submittingGroup"],"url":[0,"<no value>"],"displayGroup":[0,"group"]}],"value":[0,"Automated Ingest from INSDC/NCBI Virus by Loculus"],"header":[0,"Submission 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If not applicable, leave blank."]}],[0,{"name":[0,"breadthOfCoverage"],"displayName":[0,"Breadth of coverage"],"definition":[0,"The percentage of the reference genome covered by the sequenced data, at a prescribed depth (depthOfCoverage)."],"example":[0,"95"],"guidance":[0,"Provide the percentage (as a number)"]}],[0,{"name":[0,"cellLine"],"definition":[0,"Population of cells derived from a single cell or group of cells, which are cultured in the laboratory under controlled conditions"]}],[0,{"name":[0,"collectionDevice"],"displayName":[0,"Collection device"],"definition":[0,"The instrument or container used to collect the sample e.g. swab."],"example":[0,"Swab [GENEPIO:0100027]"],"guidance":[0,"Use this look-up service to identify a standardized term: https://www.ebi.ac.uk/ols/ontologies/obi. If not applicable, leave blank."],"desired":[0,true]}],[0,{"name":[0,"collectionMethod"],"displayName":[0,"Collection method"],"definition":[0,"The process used to collect the sample e.g. phlebotomy, necropsy."],"example":[0,"Bronchoalveolar lavage (BAL) [GENEPIO:0100032]"],"guidance":[0,"Use this look-up service to identify a standardized term: https://www.ebi.ac.uk/ols/ontologies/obi. If not applicable, leave blank."],"desired":[0,true]}],[0,{"name":[0,"consensusSequenceSoftwareName"],"displayName":[0,"Consensus sequence software name"],"definition":[0,"The name of software used to generate the consensus sequence."],"example":[0,"Ivar"],"guidance":[0,"Provide the name of the software used to generate the consensus sequence."]}],[0,{"name":[0,"consensusSequenceSoftwareVersion"],"displayName":[0,"Consensus sequence software version"],"definition":[0,"The version of the software used to generate the consensus sequence."],"example":[0,"1.3"],"guidance":[0,"Provide the version of the software used to generate the consensus sequence."]}],[0,{"name":[0,"cultureId"],"displayName":[0,"Culture ID"],"definition":[0,"An ID useful to linking to a culture"],"example":[0,"Plate7-1124"],"desired":[0,true]}],[0,{"name":[0,"dehostingMethod"],"displayName":[0,"Dehosting method"],"definition":[0,"The method used to remove host reads from the pathogen sequence."],"example":[0,"Nanostripper 1.2.3"],"guidance":[0,"Provide the name and version number of the software used to remove host reads."]}],[0,{"name":[0,"depthOfCoverage"],"displayName":[0,"Depth of coverage"],"definition":[0,"The average number of reads representing a given nucleotide in the reconstructed sequence."],"example":[0,"400"],"guidance":[0,"Provide value as a fold of coverage (as a number)."],"desired":[0,true]}],[0,{"name":[0,"diagnosticMeasurementMethod"],"displayName":[0,"Diagnostic measurement method"],"definition":[0,"Type of diagnostic test performed"],"example":[0,"RT-PCR test"]}],[0,{"name":[0,"diagnosticMeasurementUnit"],"displayName":[0,"Diagnostic measurement unit"],"definition":[0,"Unit of the diagnostic measurement value"],"example":[0,"Cycle threshold (CT)"]}],[0,{"name":[0,"diagnosticMeasurementValue"],"displayName":[0,"Diagnostic measurement value"],"example":[0,"39"]}],[0,{"name":[0,"diagnosticTargetGeneName"],"displayName":[0,"Gene name"],"definition":[0,"Name of the gene targeted by the diagnostic RT-PCR test."],"example":[0,"E gene (orf4)"]}],[0,{"name":[0,"diagnosticTargetPresence"],"displayName":[0,"Diagnostic target presence"],"definition":[0,"Boolean value, if the diagnostic target was present."],"example":[0,"True"]}],[0,{"name":[0,"environmentalMaterial"],"displayName":[0,"Environmental material"],"definition":[0,"A substance obtained from the natural or man-made environment e.g. soil, water, sewage, door handle, bed handrail, face mask."],"example":[0,"Face mask [OBI:0002787]"],"guidance":[0,"Use this look-up service to identify a standardized term: https://www.ebi.ac.uk/ols/ontologies/envo. If not applicable, leave blank."]}],[0,{"name":[0,"environmentalSite"],"displayName":[0,"Environmental site"],"definition":[0,"An environmental location may describe a site in the natural or built environment e.g. hospital, wet market, bat cave."],"example":[0,"Hospital [ENVO:00002173]"],"guidance":[0,"Use this look-up service to identify a standardized term: https://www.ebi.ac.uk/ols/ontologies/envo. If not applicable, leave blank."]}],[0,{"name":[0,"experimentalSpecimenRoleType"],"displayName":[0,"Experimental specimen role type"],"definition":[0,"The type of role that the sample represents in the experiment (control, replicate, sample under study)."],"example":[0,"Positive experimental control [GENEPIO:0101018]"],"guidance":[0,"Use this look-up service to identify a standardized term: https://www.ebi.ac.uk/ols4/ontologies/efo. If not applicable, leave blank."]}],[0,{"name":[0,"exposureDetails"],"displayName":[0,"Exposure details"],"definition":[0,"Additional host exposure information."],"example":[0,"Host role - Other: Bus Driver"]}],[0,{"name":[0,"exposureEvent"],"displayName":[0,"Exposure event"],"definition":[0,"Event leading to exposure."],"example":[0,"Mass Gathering [GENEPIO:0100237]"],"guidance":[0,"You can use the look-up service: https://www.ebi.ac.uk/ols4/ontologies/ecto to select a value."]}],[0,{"name":[0,"exposureSetting"],"displayName":[0,"Exposure setting"],"definition":[0,"The setting leading to exposure."],"example":[0,"Healthcare Setting [GENEPIO:0100201]"]}],[0,{"name":[0,"foodProduct"],"displayName":[0,"Food product"],"definition":[0,"A material consumed and digested for nutritional value or enjoyment, including animal feed."],"example":[0,"Feather meal [FOODON:00003927]; Bone meal [ENVO:02000054]; Chicken breast [FOODON:00002703]"],"guidance":[0,"Use this look-up service to identify a standardized term: https://www.ebi.ac.uk/ols4/ontologies/foodon. If not applicable, leave blank."]}],[0,{"name":[0,"foodProductProperties"],"displayName":[0,"Food product properties"],"definition":[0,"Any characteristic of the food product pertaining to its state, processing, a label claim, or implications for consumers (e.g. cooked, preserved, processed, raw, ready-to-eat)."],"example":[0,"Food (chopped) [FOODON:00002777]; Ready-to-eat (RTE) [FOODON:03316636]"],"guidance":[0,"Use this look-up service to identify a standardized term: https://www.ebi.ac.uk/ols4/ontologies/foodon. If not applicable, leave blank."]}],[0,{"name":[0,"geoLocAdmin1"],"displayName":[0,"Collection subdivision level 1"],"definition":[0,"A local administrative region from which the sample was collected (ex: Province, State, Canton)"],"example":[0,"Ontario"],"desired":[0,true]}],[0,{"name":[0,"geoLocAdmin2"],"displayName":[0,"Collection subdivision level 2"],"definition":[0,"A local administrative region from which the sample was collected (ex: county or municipality)"],"example":[0,"City of Toronto"],"desired":[0,true]}],[0,{"name":[0,"geoLocCity"],"displayName":[0,"Collection city"],"definition":[0,"The city from which the sample was collected."],"example":[0,"Toronto"]}],[0,{"name":[0,"geoLocCountry"],"displayName":[0,"Collection country"],"required":[0,true],"definition":[0,"The country from which the sample was collected."],"example":[0,"Canada"],"guidance":[0,"Please choose a country or ocean/sea from the list of options defined by INSDC standards."]}],[0,{"name":[0,"geoLocLatitude"],"displayName":[0,"Latitude"],"definition":[0,"Geo-coordinate latitude in decimal degree (WGS84) format"],"example":[0,-34.603722],"guidance":[0,"Provide values in range -90 to 90, where positive values are north of the Equator."]}],[0,{"name":[0,"geoLocLongitude"],"displayName":[0,"Longitude"],"definition":[0,"Geo-coordinate longitude in decimal degree (WGS84) format"],"example":[0,-58.381592],"guidance":[0,"Provide values in range -180 to 180, where positive values are east of the Prime Meridian."]}],[0,{"name":[0,"geoLocSite"],"displayName":[0,"Collection site"],"definition":[0,"The name of a specific geographical location e.g. Credit River (rather than river)."],"example":[0,"Credit River"]}],[0,{"name":[0,"hostAge"],"displayName":[0,"Host age"],"definition":[0,"Age of host at the time of sampling."],"example":[0,"79"],"guidance":[0,"In case of privacy concerns use hostAgeBin."]}],[0,{"name":[0,"hostAgeBin"],"displayName":[0,"Host age bin"],"definition":[0,"The age category of the host at the time of sampling."],"example":[0,"50 - 59 [GENEPIO:0100054]"],"guidance":[0,"Age bins in 10 year intervals."]}],[0,{"name":[0,"hostDisease"],"displayName":[0,"Host disease"],"definition":[0,"The name of the disease experienced by the host."],"example":[0,"mastitis, gastroenteritis"],"guidance":[0,"The standardized term can be sourced from this look-up service: https://www.ebi.ac.uk/ols/ontologies/doid."]}],[0,{"name":[0,"hostGender"],"displayName":[0,"Host gender"],"definition":[0,"The gender of the host at the time of sample collection."],"example":[0,"Male [NCIT:C46109]"]}],[0,{"name":[0,"hostHealthOutcome"],"displayName":[0,"Host health outcome"],"definition":[0,"Disease outcome in the host."],"example":[0,"Recovered [NCIT:C49498]"],"guidance":[0,"The standardized term can be sourced from this look-up service: https://www.ebi.ac.uk/ols4/ontologies/ncit"]}],[0,{"name":[0,"hostHealthState"],"displayName":[0,"Host health state"],"definition":[0,"Health status of the host at the time of sample collection."],"example":[0,"Asymptomatic [NCIT:C3833]"],"guidance":[0,"The standardized term can be sourced from this look-up service: https://www.ebi.ac.uk/ols4/ontologies/ncit"]}],[0,{"name":[0,"hostNameCommon"],"definition":[0,"The common name of the host from which the sample was collected."],"example":[0,"Human"]}],[0,{"name":[0,"hostNameScientific"],"definition":[0,"The scientific name of the host from which the sample was collected."],"example":[0,"Homo sapiens"],"desired":[0,true]}],[0,{"name":[0,"hostOriginCountry"],"displayName":[0,"Host origin country"],"definition":[0,"The country of origin of the host."],"example":[0,"South Africa"],"guidance":[0,"Please add if host origin differs from sample collection location."]}],[0,{"name":[0,"hostRole"],"displayName":[0,"Host role"],"definition":[0,"The role of the host in relation to the exposure setting."],"example":[0,"Patient [OMRSE:00000030]"]}],[0,{"name":[0,"hostTaxonId"],"definition":[0,"Taxon ID for the host"],"example":[0,"9606"],"guidance":[0,"Use https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi to find taxon ids."]}],[0,{"name":[0,"hostVaccinationStatus"],"displayName":[0,"Host vaccination status"],"definition":[0,"The vaccination status of the host (fully vaccinated, partially vaccinated, or not vaccinated) in relation to the sequenced pathogen."],"example":[0,"Fully Vaccinated [GENEPIO:0100100]"]}],[0,{"name":[0,"insdcRawReadsAccession"],"displayName":[0,"Raw reads accession"],"definition":[0,"Accession of corresponding raw reads in the INSDC, e.g. SRR27477368"],"guidance":[0,"Only add this field if you have already submitted raw reads to the INSDC, read more at https://pathoplexus.org/docs/how-to/upload-sequences."]}],[0,{"name":[0,"isLabHost"],"definition":[0,"If a laboratory host (e.g. cultured cell line) was used to propagate the sample."],"example":[0,"True"]}],[0,{"name":[0,"passageMethod"],"definition":[0,"The techniques used to subculture cells"],"example":[0,"Enzymatic Detachment"]}],[0,{"name":[0,"passageNumber"],"definition":[0,"The number of times a cell culture has been subcultured or transferred from one vessel to another."],"example":[0,"12"]}],[0,{"name":[0,"presamplingActivity"],"displayName":[0,"Presampling activity"],"definition":[0,"Any activities or variables introduced upstream of sample collection that would affect the sample prior to collection (this is different than sample processing which happens after the sample is collected)."],"example":[0,"Antimicrobial pre-treatment [GENEPIO:0100537]"]}],[0,{"name":[0,"previousInfectionDisease"],"displayName":[0,"Previous infection (disease)"],"definition":[0,"The name of the disease previously experienced by the host."],"example":[0,"COVID-19"],"guidance":[0,"The standardized term can be sourced from this look-up service: https://www.ebi.ac.uk/ols/ontologies/doid."]}],[0,{"name":[0,"previousInfectionOrganism"],"displayName":[0,"Previous infection (organism)"],"definition":[0,"The name of the pathogen causing the disease previously experienced by the host."],"example":[0,"Sudden Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2)"]}],[0,{"name":[0,"purposeOfSampling"],"definition":[0,"The reason that the sample was collected."],"example":[0,"Diagnostic testing"]}],[0,{"name":[0,"purposeOfSequencing"],"displayName":[0,"Purpose of sequencing"],"definition":[0,"The reason that the sample was sequenced."],"example":[0,"Baseline surveillance (random sampling) [GENEPIO:0100005]"],"guidance":[0,"The reason why a sample was originally collected may differ from the reason why it was selected for sequencing. The reason a sample was sequenced may provide information about potential biases in sequencing strategy."]}],[0,{"name":[0,"qualityControlDetails"],"displayName":[0,"Quality control details"],"definition":[0,"The details surrounding a low quality determination in a quality control assessment."],"example":[0,"CT value of 39. Low viral load. Low DNA concentration after amplification."]}],[0,{"name":[0,"qualityControlDetermination"],"displayName":[0,"Quality control determination"],"definition":[0,"The determination (result) of a quality control assessment."],"example":[0,"sequence failed quality control"]}],[0,{"name":[0,"qualityControlIssues"],"displayName":[0,"Quality control issues"],"definition":[0,"The reason contributing to, or causing, a low quality determination in a quality control assessment."],"example":[0,"low average genome coverage"]}],[0,{"name":[0,"qualityControlMethodName"],"displayName":[0,"Quality control method name"],"definition":[0,"The name of the method used to assess whether a sequence passed a predetermined quality control threshold."],"example":[0,"ncov-tools"],"guidance":[0,"Method names can be provided as the name of a pipeline or a link to a GitHub repository. Multiple methods should be listed and separated by a semi-colon."]}],[0,{"name":[0,"qualityControlMethodVersion"],"displayName":[0,"Quality control method version"],"definition":[0,"The version number of the method used to assess whether a sequence passed a predetermined quality control threshold."],"example":[0,"1.2.3"],"guidance":[0,"If multiple methods were used, record the version numbers in the same order as the method names. Separate the version numbers using a semi-colon."]}],[0,{"name":[0,"rawSequenceDataProcessingMethod"],"displayName":[0,"Raw sequence data processing method"],"definition":[0,"The method used for raw data processing such as removing barcodes, adapter trimming, filtering etc."],"example":[0,"Porechop 0.2.3"],"guidance":[0,"Provide the name and version numbers of the software used to process the raw data."]}],[0,{"name":[0,"sampleCollectionDate"],"displayName":[0,"Collection date"],"required":[0,true],"definition":[0,"The date on which the sample was collected."],"example":[0,"2020-03-15"],"guidance":[0,"Please format YYYY-MM-DD - use XX if unknown, ex: `2020-03-XX` or `2020-XX-XX`, and provide at least year"]}],[0,{"name":[0,"sampleReceivedDate"],"displayName":[0,"Sample received date"],"definition":[0,"The date on which the sample was received by the laboratory."],"example":[0,"2020-03-20"],"guidance":[0,"Please format YYYY-MM-DD - use XX if unknown, ex: `2020-03-XX` or `2020-XX-XX`, and provide at least year. Before sharing this data, ensure this date is not considered identifiable information."],"desired":[0,true]}],[0,{"name":[0,"sampleType"],"displayName":[0,"Sample type"],"definition":[0,"Method of sampling."],"example":[0,"Nasopharyngeal Swabs"]}],[0,{"name":[0,"sequencedByContactEmail"],"displayName":[0,"Sequenced by - contact email"],"definition":[0,"The email address of the contact responsible for follow-up regarding the sequence."],"example":[0,"enterics@lab.ca"],"guidance":[0,"As personnel turnover may render an individual's email obsolete, it is more prefereable to provide an address for a position or lab, to ensure accuracy of information and institutional memory."]}],[0,{"name":[0,"sequencedByContactName"],"displayName":[0,"Sequenced by - contact name"],"definition":[0,"The name or title of the contact responsible for follow-up regarding the sequence."],"example":[0,"Enterics Lab Manager"],"guidance":[0,"As personnel turnover may render the contact's name obsolete, it is more prefereable to provide a job title for ensuring accuracy of information and institutional memory."]}],[0,{"name":[0,"sequencedByOrganization"],"displayName":[0,"Sequenced by"],"definition":[0,"The name of the agency, organization or institution responsible for sequencing the isolate's genome."],"example":[0,"Public Health Agency of Canada (PHAC) [GENEPIO:0100551]"]}],[0,{"name":[0,"sequencingAssayType"],"displayName":[0,"Sequencing assay type"],"definition":[0,"The overarching DNA or RNA sequencing methodology that was used to determine the sequence of a biomaterial."],"example":[0,"whole genome sequencing assay [OBI:0002117]"],"guidance":[0,"First check if there exists a standardized term: https://www.ebi.ac.uk/ols4/ontologies/obi for your assay, if not add your methodology in free text."]}],[0,{"name":[0,"sequencingDate"],"displayName":[0,"Sequencing date"],"definition":[0,"The date the sample was sequenced."],"example":[0,"2021-04-26"],"guidance":[0,"Please format YYYY-MM-DD - use XX if unknown, ex: `2020-03-XX` or `2020-XX-XX`, and provide at least year"],"desired":[0,true]}],[0,{"name":[0,"sequencingInstrument"],"displayName":[0,"Sequencing instrument"],"example":[0,"Oxford Nanopore MinION [GENEPIO:0100142]"],"guidance":[0,"First check if there exists a standardized term: https://www.ebi.ac.uk/ols4/ontologies/obi for your model, if not add your model in free text."],"desired":[0,true]}],[0,{"name":[0,"sequencingProtocol"],"displayName":[0,"Sequencing protocol"],"definition":[0,"The protocol used to generate the sequence."],"example":[0,"Genomes were generated through amplicon sequencing of 1200 bp amplicons with Freed schema primers. Libraries were created using Illumina DNA Prep kits, and sequence data was produced using Miseq Micro v2 (500 cycles) sequencing kits."],"guidance":[0,"Provide methods and materials used to generate the sequence (e.g. amplicon strategy, primer scheme, sequencing instrument, library kit)."],"desired":[0,true]}],[0,{"name":[0,"signsAndSymptoms"],"displayName":[0,"Signs and symptoms"],"definition":[0,"A perceived change in function or sensation, (loss, disturbance or appearance) indicative of a disease, reported by a patient."],"example":[0,"Cough [HP:0012735], Fever [HP:0001945], Rigors (fever shakes) [HP:0025145]"],"guidance":[0,"The standardized term can be sourced from this look-up service: https://www.ebi.ac.uk/ols4/ontologies/symp."]}],[0,{"name":[0,"specimenCollectorSampleId"],"displayName":[0,"Isolate name"],"definition":[0,"Any other non-identifiable sample ID attached to the sequence."],"example":[0,"Isolate 1"],"desired":[0,true]}],[0,{"name":[0,"specimenProcessing"],"displayName":[0,"Specimen processing"],"definition":[0,"The processing applied to samples post-collection, prior to further testing, characterization, or isolation procedures."],"example":[0,"Samples pooled [OBI:0600016]"],"guidance":[0,"Use this look-up service to identify a standardized term: https://www.ebi.ac.uk/ols4/ontologies/obi. If not applicable, leave blank."]}],[0,{"name":[0,"specimenProcessingDetails"],"displayName":[0,"Specimen processing details"],"definition":[0,"Detailed information regarding the processing applied to a sample during or after receiving the sample."],"example":[0,"25 swabs were pooled and further prepared as a single sample during library prep."]}],[0,{"name":[0,"travelHistory"],"displayName":[0,"Travel history"],"example":[0,"Canada, Vancouver; USA, Seattle; Italy, Milan"],"guidance":[0,"Specify the countries travelled in the last six months; separate multiple travel events with a semicolon."]}],[0,{"name":[0,"versionComment"],"displayName":[0,"Version comment"],"definition":[0,"Reason for revising sequences or other general comments concerning a specific version"],"example":[0,"Fixed an issue in previous version where low-coverage nucleotides were erroneously filled with reference sequence"],"desired":[0,true]}]]],"tableColumns":[1,[[0,"sampleCollectionDate"],[0,"geoLocCountry"],[0,"geoLocAdmin1"],[0,"authors"],[0,"authorAffiliations"],[0,"earliestReleaseDate"],[0,"hostNameScientific"],[0,"length_M"],[0,"length_S"],[0,"length_L"]]],"primaryKey":[0,"accessionVersion"],"defaultOrderBy":[0,"sampleCollectionDate"],"defaultOrder":[0,"descending"],"submissionDataTypes":[0,{"consensusSequences":[0,true]}],"loadSequencesAutomatically":[0,true]}],"clientConfig":[0,{"backendUrl":[0,"https://backend.pathoplexus.org"],"lapisUrls":[0,{"cchf":[0,"https://lapis.pathoplexus.org/cchf"],"ebola-sudan":[0,"https://lapis.pathoplexus.org/ebola-sudan"],"ebola-zaire":[0,"https://lapis.pathoplexus.org/ebola-zaire"],"mpox":[0,"https://lapis.pathoplexus.org/mpox"],"west-nile":[0,"https://lapis.pathoplexus.org/west-nile"]}]}],"myGroups":[1,[]],"accessToken":[0],"sequenceFlaggingConfig":[0,{"github":[0,{"organization":[0,"pathoplexus"],"repository":[0,"curation_reports"],"issueTemplate":[0,"sequence-metadata-issue.md"]}]}]}" ssr client="load" opts="{"name":"SequenceDataUI","value":true}" await-children><div><div class="pr-6 mb-4 italic">Display Name: <!-- -->France/PP_000RE4V.3/2023-01-01</div><div class="pr-6 mb-4"><div><span>Picard<!-- -->, </span><span>C.; Baize<!-- -->, </span><span>S.</span></div></div><div class="grid gap-x-6" style="grid-template-columns:repeat(auto-fill, minmax(min(100vw, 32rem), 1fr))"><div class="p-4 pl-0"><div class="flex flex-row"><h1 class="py-2 text-lg font-semibold border-b mr-2">Submission details</h1></div><div class="mt-4"><div class="text-sm grid my-1" style="grid-template-columns:200px 1fr"><div class="font-medium text-gray-900 break-inside-avoid pr-4">Submission ID</div><div class="whitespace-normal text-gray-600 break-inside-avoid"><div class="whitespace-wrap">PP067063.1.L/PP067076.1.M/PP067048.1.S</div></div></div><div class="text-sm grid my-1" style="grid-template-columns:200px 1fr"><div class="font-medium text-gray-900 break-inside-avoid pr-4">Submitting group</div><div class="whitespace-normal text-gray-600 break-inside-avoid"><div class="whitespace-wrap"><a href="/group/1" class="underline">Automated Ingest from INSDC/NCBI Virus by Loculus</a></div></div></div><div class="text-sm grid my-1" style="grid-template-columns:200px 1fr"><div class="font-medium text-gray-900 break-inside-avoid pr-4">Date submitted</div><div class="whitespace-normal text-gray-600 break-inside-avoid"><div class="whitespace-wrap">2024-10-29 17:10:51 UTC</div></div></div><div class="text-sm grid my-1" style="grid-template-columns:200px 1fr"><div class="font-medium text-gray-900 break-inside-avoid pr-4">Date released</div><div class="whitespace-normal text-gray-600 break-inside-avoid"><div class="whitespace-wrap">2024-10-29 17:16:10 UTC</div></div></div></div></div><div class="p-4 pl-0"><div class="flex flex-row"><h1 class="py-2 text-lg font-semibold border-b mr-2">Data use terms</h1></div><div class="mt-4"><div class="text-sm grid my-1" style="grid-template-columns:200px 1fr"><div class="font-medium text-gray-900 break-inside-avoid pr-4">Data use terms</div><div class="whitespace-normal text-gray-600 break-inside-avoid"><div class="whitespace-wrap">OPEN<!-- --> <dialog class="modal"><div class="modal-box w-auto max-w-md"><form method="dialog"><button class="btn btn-sm btn-circle btn-ghost absolute right-2 top-2">✕</button></form><h3 class="font-bold text-lg">Data Use Terms History</h3><table class="table"><thead><tr><th>Changed</th><th>User</th><th>Data Use Terms</th></tr></thead><tbody><tr><td>2024-08-27 12:11</td><td>insdc_ingest_user</td><td>OPEN</td></tr></tbody></table><div class="flex justify-end gap-4 mt-4"><form method="dialog"><button class="btn">Close</button></form></div></div></dialog><span><button class="underline">(history)</button></span></div></div></div><div class="text-sm grid my-1" style="grid-template-columns:200px 1fr"><div class="font-medium text-gray-900 break-inside-avoid pr-4">Data use terms URL</div><div class="whitespace-normal text-gray-600 break-inside-avoid"><div class="whitespace-wrap"><a href="https://pathoplexus.org/about/terms-of-use/open-data" target="_blank" class="underline">https://pathoplexus.org/about/terms-of-use/open-data</a></div></div></div></div></div><div class="p-4 pl-0"><div class="flex flex-row"><h1 class="py-2 text-lg font-semibold border-b mr-2">Authors</h1></div><div class="mt-4"><div class="text-sm grid my-1" style="grid-template-columns:200px 1fr"><div class="font-medium text-gray-900 break-inside-avoid pr-4">Author affiliations</div><div class="whitespace-normal text-gray-600 break-inside-avoid"><div class="whitespace-wrap">Institut Pasteur, Virology</div></div></div></div></div><div class="p-4 pl-0"><div class="flex flex-row"><h1 class="py-2 text-lg font-semibold border-b mr-2">Alignment and QC metrics L</h1><button class="text-gray-400 hover:text-primary-600 "><svg viewBox="0 0 24 24" width="1.2em" height="1.2em" class="inline-block h-6 w-5"><path fill="currentColor" d="M11 17h2v-6h-2zm1-8q.425 0 .713-.288T13 8t-.288-.712T12 7t-.712.288T11 8t.288.713T12 9m0 13q-2.075 0-3.9-.788t-3.175-2.137T2.788 15.9T2 12t.788-3.9t2.137-3.175T8.1 2.788T12 2t3.9.788t3.175 2.137T21.213 8.1T22 12t-.788 3.9t-2.137 3.175t-3.175 2.138T12 22m0-2q3.35 0 5.675-2.325T20 12t-2.325-5.675T12 4T6.325 6.325T4 12t2.325 5.675T12 20m0-8"></path></svg></button></div><div class="mt-4"><div class="text-sm grid my-1" style="grid-template-columns:200px 1fr"><div class="font-medium text-gray-900 break-inside-avoid pr-4">Completeness L</div><div class="whitespace-normal text-gray-600 break-inside-avoid"><div class="whitespace-wrap">97.77%</div></div></div><div class="text-sm grid my-1" style="grid-template-columns:200px 1fr"><div class="font-medium text-gray-900 break-inside-avoid pr-4">Length L</div><div class="whitespace-normal text-gray-600 break-inside-avoid"><div class="whitespace-wrap">11838</div></div></div><div class="text-sm grid my-1" style="grid-template-columns:200px 1fr"><div class="font-medium text-gray-900 break-inside-avoid pr-4">Total ambiguous nucs L</div><div class="whitespace-normal text-gray-600 break-inside-avoid"><div class="whitespace-wrap">0</div></div></div><div class="text-sm grid my-1" style="grid-template-columns:200px 1fr"><div class="font-medium text-gray-900 break-inside-avoid pr-4">Total deleted nucs L</div><div class="whitespace-normal text-gray-600 break-inside-avoid"><div class="whitespace-wrap">0</div></div></div><div class="text-sm grid my-1" style="grid-template-columns:200px 1fr"><div class="font-medium text-gray-900 break-inside-avoid pr-4">Total frame shifts L</div><div class="whitespace-normal text-gray-600 break-inside-avoid"><div class="whitespace-wrap">0</div></div></div><div class="text-sm grid my-1" style="grid-template-columns:200px 1fr"><div class="font-medium text-gray-900 break-inside-avoid pr-4">Total inserted nucs L</div><div class="whitespace-normal text-gray-600 break-inside-avoid"><div class="whitespace-wrap">0</div></div></div><div class="text-sm grid my-1" style="grid-template-columns:200px 1fr"><div class="font-medium text-gray-900 break-inside-avoid pr-4">Total SNPs L</div><div class="whitespace-normal text-gray-600 break-inside-avoid"><div class="whitespace-wrap">243</div></div></div><div class="text-sm grid my-1" style="grid-template-columns:200px 1fr"><div class="font-medium text-gray-900 break-inside-avoid pr-4">Total unknown nucs L</div><div class="whitespace-normal text-gray-600 break-inside-avoid"><div class="whitespace-wrap">0</div></div></div></div></div><div class="p-4 pl-0"><div class="flex flex-row"><h1 class="py-2 text-lg font-semibold border-b mr-2">Alignment and QC metrics M</h1><button class="text-gray-400 hover:text-primary-600 "><svg viewBox="0 0 24 24" width="1.2em" height="1.2em" class="inline-block h-6 w-5"><path fill="currentColor" d="M11 17h2v-6h-2zm1-8q.425 0 .713-.288T13 8t-.288-.712T12 7t-.712.288T11 8t.288.713T12 9m0 13q-2.075 0-3.9-.788t-3.175-2.137T2.788 15.9T2 12t.788-3.9t2.137-3.175T8.1 2.788T12 2t3.9.788t3.175 2.137T21.213 8.1T22 12t-.788 3.9t-2.137 3.175t-3.175 2.138T12 22m0-2q3.35 0 5.675-2.325T20 12t-2.325-5.675T12 4T6.325 6.325T4 12t2.325 5.675T12 20m0-8"></path></svg></button></div><div class="mt-4"><div class="text-sm grid my-1" style="grid-template-columns:200px 1fr"><div class="font-medium text-gray-900 break-inside-avoid pr-4">Completeness M</div><div class="whitespace-normal text-gray-600 break-inside-avoid"><div class="whitespace-wrap">80.79%</div></div></div><div class="text-sm grid my-1" style="grid-template-columns:200px 1fr"><div class="font-medium text-gray-900 break-inside-avoid pr-4">Length M</div><div class="whitespace-normal text-gray-600 break-inside-avoid"><div class="whitespace-wrap">4335</div></div></div><div class="text-sm grid my-1" style="grid-template-columns:200px 1fr"><div class="font-medium text-gray-900 break-inside-avoid pr-4">Total ambiguous nucs M</div><div class="whitespace-normal text-gray-600 break-inside-avoid"><div class="whitespace-wrap">0</div></div></div><div class="text-sm grid my-1" style="grid-template-columns:200px 1fr"><div class="font-medium text-gray-900 break-inside-avoid pr-4">Total deleted nucs M</div><div class="whitespace-normal text-gray-600 break-inside-avoid"><div class="whitespace-wrap">0</div></div></div><div class="text-sm grid my-1" style="grid-template-columns:200px 1fr"><div class="font-medium text-gray-900 break-inside-avoid pr-4">Total frame shifts M</div><div class="whitespace-normal text-gray-600 break-inside-avoid"><div class="whitespace-wrap">0</div></div></div><div class="text-sm grid my-1" style="grid-template-columns:200px 1fr"><div class="font-medium text-gray-900 break-inside-avoid pr-4">Total inserted nucs M</div><div class="whitespace-normal text-gray-600 break-inside-avoid"><div class="whitespace-wrap">0</div></div></div><div class="text-sm grid my-1" style="grid-template-columns:200px 1fr"><div class="font-medium text-gray-900 break-inside-avoid pr-4">Total SNPs M</div><div class="whitespace-normal text-gray-600 break-inside-avoid"><div class="whitespace-wrap">373</div></div></div><div class="text-sm grid my-1" style="grid-template-columns:200px 1fr"><div class="font-medium text-gray-900 break-inside-avoid pr-4">Total unknown nucs M</div><div class="whitespace-normal text-gray-600 break-inside-avoid"><div class="whitespace-wrap">0</div></div></div></div></div><div class="p-4 pl-0"><div class="flex flex-row"><h1 class="py-2 text-lg font-semibold border-b mr-2">Alignment and QC metrics S</h1><button class="text-gray-400 hover:text-primary-600 "><svg viewBox="0 0 24 24" width="1.2em" height="1.2em" class="inline-block h-6 w-5"><path fill="currentColor" d="M11 17h2v-6h-2zm1-8q.425 0 .713-.288T13 8t-.288-.712T12 7t-.712.288T11 8t.288.713T12 9m0 13q-2.075 0-3.9-.788t-3.175-2.137T2.788 15.9T2 12t.788-3.9t2.137-3.175T8.1 2.788T12 2t3.9.788t3.175 2.137T21.213 8.1T22 12t-.788 3.9t-2.137 3.175t-3.175 2.138T12 22m0-2q3.35 0 5.675-2.325T20 12t-2.325-5.675T12 4T6.325 6.325T4 12t2.325 5.675T12 20m0-8"></path></svg></button></div><div class="mt-4"><div class="text-sm grid my-1" style="grid-template-columns:200px 1fr"><div class="font-medium text-gray-900 break-inside-avoid pr-4">Completeness S</div><div class="whitespace-normal text-gray-600 break-inside-avoid"><div class="whitespace-wrap">86.66%</div></div></div><div class="text-sm grid my-1" style="grid-template-columns:200px 1fr"><div class="font-medium text-gray-900 break-inside-avoid pr-4">Length S</div><div class="whitespace-normal text-gray-600 break-inside-avoid"><div class="whitespace-wrap">1449</div></div></div><div class="text-sm grid my-1" style="grid-template-columns:200px 1fr"><div class="font-medium text-gray-900 break-inside-avoid pr-4">Total ambiguous nucs S</div><div class="whitespace-normal text-gray-600 break-inside-avoid"><div class="whitespace-wrap">0</div></div></div><div class="text-sm grid my-1" style="grid-template-columns:200px 1fr"><div class="font-medium text-gray-900 break-inside-avoid pr-4">Total deleted nucs S</div><div class="whitespace-normal text-gray-600 break-inside-avoid"><div class="whitespace-wrap">0</div></div></div><div class="text-sm grid my-1" style="grid-template-columns:200px 1fr"><div class="font-medium text-gray-900 break-inside-avoid pr-4">Total frame shifts S</div><div class="whitespace-normal text-gray-600 break-inside-avoid"><div class="whitespace-wrap">0</div></div></div><div class="text-sm grid my-1" style="grid-template-columns:200px 1fr"><div class="font-medium text-gray-900 break-inside-avoid pr-4">Total inserted nucs S</div><div class="whitespace-normal text-gray-600 break-inside-avoid"><div class="whitespace-wrap">0</div></div></div><div class="text-sm grid my-1" style="grid-template-columns:200px 1fr"><div class="font-medium text-gray-900 break-inside-avoid pr-4">Total SNPs S</div><div class="whitespace-normal text-gray-600 break-inside-avoid"><div class="whitespace-wrap">107</div></div></div><div class="text-sm grid my-1" style="grid-template-columns:200px 1fr"><div class="font-medium text-gray-900 break-inside-avoid pr-4">Total unknown nucs S</div><div class="whitespace-normal text-gray-600 break-inside-avoid"><div class="whitespace-wrap">0</div></div></div></div></div><div class="p-4 pl-0"><div class="flex flex-row"><h1 class="py-2 text-lg font-semibold border-b mr-2">Sample details</h1></div><div class="mt-4"><div class="text-sm grid my-1" style="grid-template-columns:200px 1fr"><div class="font-medium text-gray-900 break-inside-avoid pr-4">Earliest release date</div><div class="whitespace-normal text-gray-600 break-inside-avoid"><div class="whitespace-wrap">2024-01-21</div></div></div><div class="text-sm grid my-1" style="grid-template-columns:200px 1fr"><div class="font-medium text-gray-900 break-inside-avoid pr-4">Collection country</div><div class="whitespace-normal text-gray-600 break-inside-avoid"><div class="whitespace-wrap">France</div></div></div><div class="text-sm grid my-1" style="grid-template-columns:200px 1fr"><div class="font-medium text-gray-900 break-inside-avoid pr-4">Collection date</div><div class="whitespace-normal text-gray-600 break-inside-avoid"><div class="whitespace-wrap">2023</div></div></div><div class="text-sm grid my-1" style="grid-template-columns:200px 1fr"><div class="font-medium text-gray-900 break-inside-avoid pr-4">Collection date (lower bound)</div><div class="whitespace-normal text-gray-600 break-inside-avoid"><div class="whitespace-wrap">2023-01-01</div></div></div><div class="text-sm grid my-1" style="grid-template-columns:200px 1fr"><div class="font-medium text-gray-900 break-inside-avoid pr-4">Collection date (upper bound)</div><div class="whitespace-normal text-gray-600 break-inside-avoid"><div class="whitespace-wrap">2023-12-31</div></div></div><div class="text-sm grid my-1" style="grid-template-columns:200px 1fr"><div class="font-medium text-gray-900 break-inside-avoid pr-4">Isolate name</div><div class="whitespace-normal text-gray-600 break-inside-avoid"><div class="whitespace-wrap">12AG9</div></div></div></div></div><div class="p-4 pl-0"><div class="flex flex-row"><h1 class="py-2 text-lg font-semibold border-b mr-2">Host</h1></div><div class="mt-4"><div class="text-sm grid my-1" style="grid-template-columns:200px 1fr"><div class="font-medium text-gray-900 break-inside-avoid pr-4">Host name scientific</div><div class="whitespace-normal text-gray-600 break-inside-avoid"><div class="whitespace-wrap">Hyalomma marginatum</div></div></div><div class="text-sm grid my-1" style="grid-template-columns:200px 1fr"><div class="font-medium text-gray-900 break-inside-avoid pr-4">Host taxon id</div><div class="whitespace-normal text-gray-600 break-inside-avoid"><div class="whitespace-wrap"><a href="https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=info&id=34627" target="_blank" class="underline">34627</a></div></div></div></div></div><div class="p-4 pl-0"><div class="flex flex-row"><h1 class="py-2 text-lg font-semibold border-b mr-2">INSDC</h1></div><div class="mt-4"><div class="text-sm grid my-1" style="grid-template-columns:200px 1fr"><div class="font-medium text-gray-900 break-inside-avoid pr-4">INSDC accession L</div><div class="whitespace-normal text-gray-600 break-inside-avoid"><div class="whitespace-wrap"><a href="https://www.ncbi.nlm.nih.gov/nuccore/PP067063.1" target="_blank" class="underline">PP067063.1</a></div></div></div><div class="text-sm grid my-1" style="grid-template-columns:200px 1fr"><div class="font-medium text-gray-900 break-inside-avoid pr-4">INSDC accession M</div><div class="whitespace-normal text-gray-600 break-inside-avoid"><div class="whitespace-wrap"><a href="https://www.ncbi.nlm.nih.gov/nuccore/PP067076.1" target="_blank" class="underline">PP067076.1</a></div></div></div><div class="text-sm grid my-1" style="grid-template-columns:200px 1fr"><div class="font-medium text-gray-900 break-inside-avoid pr-4">INSDC accession S</div><div class="whitespace-normal text-gray-600 break-inside-avoid"><div class="whitespace-wrap"><a href="https://www.ncbi.nlm.nih.gov/nuccore/PP067048.1" target="_blank" class="underline">PP067048.1</a></div></div></div><div class="text-sm grid my-1" style="grid-template-columns:200px 1fr"><div class="font-medium text-gray-900 break-inside-avoid pr-4">NCBI release date</div><div class="whitespace-normal text-gray-600 break-inside-avoid"><div class="whitespace-wrap">2024-01-21</div></div></div></div></div><div class="p-4 pl-0"><div class="flex flex-row"><h1 class="py-2 text-lg font-semibold border-b mr-2">Nucleotide mutations</h1></div><h2 class="pt-2 text-xs text-gray-500"><svg viewBox="0 0 24 24" width="1.2em" height="1.2em" class="inline-block h-4 w-4 mr-1 -mt-0.5"><path fill="currentColor" d="M12 22C6.477 22 2 17.523 2 12S6.477 2 12 2s10 4.477 10 10s-4.477 10-10 10m0-2a8 8 0 1 0 0-16a8 8 0 0 0 0 16M11 7h2v2h-2zm0 4h2v6h-2z"></path></svg>Mutations called relative to the <a class="underline hover:text-primary-500" target="_blank" href="https://www.ncbi.nlm.nih.gov/nuccore/NC_005301.3">NC_005301.3</a>, <a class="underline hover:text-primary-500" target="_blank" href="https://www.ncbi.nlm.nih.gov/nuccore/NC_005300.2">NC_005300.2</a> & <a class="underline hover:text-primary-500" target="_blank" href="https://www.ncbi.nlm.nih.gov/nuccore/NC_005302.1">NC_005302.1</a> reference<!-- -->s</h2><div class="mt-4"><div class="text-sm my-1"><div class="font-medium text-gray-900 break-inside-avoid py-2">Substitutions</div><div class="whitespace-normal text-gray-600 break-inside-avoid"><div class="whitespace-wrap"><div><h2 class="py-1 my-1 font-semibold border-b">L</h2><div><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">L<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#c2b553">G</span><span class="px-[4px] py-[2px] bg-gray-200">93</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#db8070">A</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">L<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#db8070">A</span><span class="px-[4px] py-[2px] bg-gray-200">220</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#c2b553">G</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">L<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#7fbb81">T</span><span class="px-[4px] py-[2px] bg-gray-200">254</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#db8070">A</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">L<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#db8070">A</span><span class="px-[4px] py-[2px] bg-gray-200">298</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#c2b553">G</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">L<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#859dfc">C</span><span class="px-[4px] py-[2px] bg-gray-200">313</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#7fbb81">T</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">L<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#7fbb81">T</span><span class="px-[4px] py-[2px] bg-gray-200">340</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#859dfc">C</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">L<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#7fbb81">T</span><span class="px-[4px] py-[2px] bg-gray-200">550</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#db8070">A</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">L<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#c2b553">G</span><span class="px-[4px] py-[2px] bg-gray-200">553</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#db8070">A</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">L<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#859dfc">C</span><span class="px-[4px] py-[2px] bg-gray-200">568</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#7fbb81">T</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">L<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#c2b553">G</span><span class="px-[4px] py-[2px] bg-gray-200">619</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#db8070">A</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">L<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#859dfc">C</span><span class="px-[4px] py-[2px] bg-gray-200">673</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#7fbb81">T</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">L<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#859dfc">C</span><span class="px-[4px] py-[2px] bg-gray-200">727</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#7fbb81">T</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">L<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#db8070">A</span><span class="px-[4px] py-[2px] bg-gray-200">745</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#c2b553">G</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">L<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#c2b553">G</span><span class="px-[4px] py-[2px] bg-gray-200">766</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#db8070">A</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">L<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#7fbb81">T</span><span class="px-[4px] py-[2px] bg-gray-200">781</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#859dfc">C</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">L<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#7fbb81">T</span><span class="px-[4px] py-[2px] bg-gray-200">790</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#859dfc">C</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">L<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#859dfc">C</span><span class="px-[4px] py-[2px] bg-gray-200">829</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#7fbb81">T</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">L<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#db8070">A</span><span class="px-[4px] py-[2px] bg-gray-200">859</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#c2b553">G</span></span></li> </span><button class="underline">Show more</button></div></div><div><h2 class="py-1 my-1 font-semibold border-b">M</h2><div><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">M<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#c2b553">G</span><span class="px-[4px] py-[2px] bg-gray-200">818</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#db8070">A</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">M<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#db8070">A</span><span class="px-[4px] py-[2px] bg-gray-200">833</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#c2b553">G</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">M<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#db8070">A</span><span class="px-[4px] py-[2px] bg-gray-200">840</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#c2b553">G</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">M<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#7fbb81">T</span><span class="px-[4px] py-[2px] bg-gray-200">860</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#859dfc">C</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">M<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#7fbb81">T</span><span class="px-[4px] py-[2px] bg-gray-200">866</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#859dfc">C</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">M<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#7fbb81">T</span><span class="px-[4px] py-[2px] bg-gray-200">872</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#859dfc">C</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">M<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#7fbb81">T</span><span class="px-[4px] py-[2px] bg-gray-200">887</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#859dfc">C</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">M<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#c2b553">G</span><span class="px-[4px] py-[2px] bg-gray-200">890</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#859dfc">C</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">M<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#7fbb81">T</span><span class="px-[4px] py-[2px] bg-gray-200">897</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#859dfc">C</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">M<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#db8070">A</span><span class="px-[4px] py-[2px] bg-gray-200">899</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#7fbb81">T</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">M<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#c2b553">G</span><span class="px-[4px] py-[2px] bg-gray-200">908</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#db8070">A</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">M<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#db8070">A</span><span class="px-[4px] py-[2px] bg-gray-200">911</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#7fbb81">T</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">M<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#7fbb81">T</span><span class="px-[4px] py-[2px] bg-gray-200">938</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#859dfc">C</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">M<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#db8070">A</span><span class="px-[4px] py-[2px] bg-gray-200">941</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#c2b553">G</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">M<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#c2b553">G</span><span class="px-[4px] py-[2px] bg-gray-200">944</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#db8070">A</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">M<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#db8070">A</span><span class="px-[4px] py-[2px] bg-gray-200">955</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#c2b553">G</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">M<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#7fbb81">T</span><span class="px-[4px] py-[2px] bg-gray-200">968</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#859dfc">C</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">M<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#859dfc">C</span><span class="px-[4px] py-[2px] bg-gray-200">983</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#7fbb81">T</span></span></li> </span><button class="underline">Show more</button></div></div><div><h2 class="py-1 my-1 font-semibold border-b">S</h2><div><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">S<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#c2b553">G</span><span class="px-[4px] py-[2px] bg-gray-200">67</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#db8070">A</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">S<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#c2b553">G</span><span class="px-[4px] py-[2px] bg-gray-200">99</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#db8070">A</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">S<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#c2b553">G</span><span class="px-[4px] py-[2px] bg-gray-200">100</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#db8070">A</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">S<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#859dfc">C</span><span class="px-[4px] py-[2px] bg-gray-200">178</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#db8070">A</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">S<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#c2b553">G</span><span class="px-[4px] py-[2px] bg-gray-200">189</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#db8070">A</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">S<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#7fbb81">T</span><span class="px-[4px] py-[2px] bg-gray-200">199</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#859dfc">C</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">S<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#c2b553">G</span><span class="px-[4px] py-[2px] bg-gray-200">202</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#db8070">A</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">S<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#c2b553">G</span><span class="px-[4px] py-[2px] bg-gray-200">229</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#db8070">A</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">S<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#859dfc">C</span><span class="px-[4px] py-[2px] bg-gray-200">235</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#7fbb81">T</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">S<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#db8070">A</span><span class="px-[4px] py-[2px] bg-gray-200">247</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#c2b553">G</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">S<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#c2b553">G</span><span class="px-[4px] py-[2px] bg-gray-200">271</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#db8070">A</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">S<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#859dfc">C</span><span class="px-[4px] py-[2px] bg-gray-200">295</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#7fbb81">T</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">S<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#db8070">A</span><span class="px-[4px] py-[2px] bg-gray-200">298</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#c2b553">G</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">S<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#db8070">A</span><span class="px-[4px] py-[2px] bg-gray-200">322</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#c2b553">G</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">S<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#db8070">A</span><span class="px-[4px] py-[2px] bg-gray-200">327</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#c2b553">G</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">S<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#c2b553">G</span><span class="px-[4px] py-[2px] bg-gray-200">346</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#db8070">A</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">S<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#db8070">A</span><span class="px-[4px] py-[2px] bg-gray-200">358</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#859dfc">C</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">S<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#859dfc">C</span><span class="px-[4px] py-[2px] bg-gray-200">370</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#7fbb81">T</span></span></li> </span><button class="underline">Show more</button></div></div></div></div></div><div class="text-sm my-1"><div class="font-medium text-gray-900 break-inside-avoid py-2">Deletions</div><div class="whitespace-normal text-gray-600 break-inside-avoid"><div class="whitespace-wrap"><span class="italic">None</span></div></div></div><div class="text-sm my-1"><div class="font-medium text-gray-900 break-inside-avoid py-2">Insertions</div><div class="whitespace-normal text-gray-600 break-inside-avoid"><div class="whitespace-wrap"><span class="italic">None</span></div></div></div></div></div><div class="p-4 pl-0"><div class="flex flex-row"><h1 class="py-2 text-lg font-semibold border-b mr-2">Amino acid mutations</h1></div><h2 class="pt-2 text-xs text-gray-500"><svg viewBox="0 0 24 24" width="1.2em" height="1.2em" class="inline-block h-4 w-4 mr-1 -mt-0.5"><path fill="currentColor" d="M12 22C6.477 22 2 17.523 2 12S6.477 2 12 2s10 4.477 10 10s-4.477 10-10 10m0-2a8 8 0 1 0 0-16a8 8 0 0 0 0 16M11 7h2v2h-2zm0 4h2v6h-2z"></path></svg>Mutations called relative to the <a class="underline hover:text-primary-500" target="_blank" href="https://www.ncbi.nlm.nih.gov/nuccore/NC_005301.3">NC_005301.3</a>, <a class="underline hover:text-primary-500" target="_blank" href="https://www.ncbi.nlm.nih.gov/nuccore/NC_005300.2">NC_005300.2</a> & <a class="underline hover:text-primary-500" target="_blank" href="https://www.ncbi.nlm.nih.gov/nuccore/NC_005302.1">NC_005302.1</a> reference<!-- -->s</h2><div class="mt-4"><div class="text-sm my-1"><div class="font-medium text-gray-900 break-inside-avoid py-2">Substitutions</div><div class="whitespace-normal text-gray-600 break-inside-avoid"><div class="whitespace-wrap"><div><h2 class="py-1 my-1 font-semibold border-b">GPC</h2><div><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">GPC<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#b4a2e5">K</span><span class="px-[4px] py-[2px] bg-gray-200">250</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#e59c6c">E</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">GPC<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#e5aacd">Q</span><span class="px-[4px] py-[2px] bg-gray-200">273</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#9ddde5">H</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">GPC<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#b4a2e5">K</span><span class="px-[4px] py-[2px] bg-gray-200">288</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#878fe5">R</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">GPC<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#7fbb81">T</span><span class="px-[4px] py-[2px] bg-gray-200">298</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#db8070">A</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">GPC<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#b4a2e5">K</span><span class="px-[4px] py-[2px] bg-gray-200">302</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#e59c6c">E</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">GPC<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#b6b5e5">P</span><span class="px-[4px] py-[2px] bg-gray-200">334</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#9ddde5">H</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">GPC<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#c2b553">G</span><span class="px-[4px] py-[2px] bg-gray-200">336</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#b4a2e5">K</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">GPC<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#e5e550">L</span><span class="px-[4px] py-[2px] bg-gray-200">337</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#b6b5e5">P</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">GPC<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#e59c6c">E</span><span class="px-[4px] py-[2px] bg-gray-200">341</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#b4a2e5">K</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">GPC<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#e5e514">I</span><span class="px-[4px] py-[2px] bg-gray-200">377</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#e5e57c">V</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">GPC<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#e5e57c">V</span><span class="px-[4px] py-[2px] bg-gray-200">385</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#db8070">A</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">GPC<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#e5e57c">V</span><span class="px-[4px] py-[2px] bg-gray-200">433</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#e5e550">L</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">GPC<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#e5e514">I</span><span class="px-[4px] py-[2px] bg-gray-200">445</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#db8070">A</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">GPC<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#db8070">A</span><span class="px-[4px] py-[2px] bg-gray-200">448</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#7fbb81">T</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">GPC<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#57cfe5">Y</span><span class="px-[4px] py-[2px] bg-gray-200">455</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#9ddde5">H</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">GPC<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#e5e57c">V</span><span class="px-[4px] py-[2px] bg-gray-200">459</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#7fbb81">T</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">GPC<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#e5774e">D</span><span class="px-[4px] py-[2px] bg-gray-200">484</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#c2b553">G</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">GPC<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#db8070">A</span><span class="px-[4px] py-[2px] bg-gray-200">511</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#e5e57c">V</span></span></li> </span><button class="underline">Show more</button></div></div><div><h2 class="py-1 my-1 font-semibold border-b">NP</h2><div><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">NP<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#878fe5">R</span><span class="px-[4px] py-[2px] bg-gray-200">15</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#b4a2e5">K</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">NP<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#878fe5">R</span><span class="px-[4px] py-[2px] bg-gray-200">45</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#b4a2e5">K</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">NP<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#b4a2e5">K</span><span class="px-[4px] py-[2px] bg-gray-200">91</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#878fe5">R</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">NP<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#7fbb81">T</span><span class="px-[4px] py-[2px] bg-gray-200">124</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#db8070">A</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">NP<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#c2b553">G</span><span class="px-[4px] py-[2px] bg-gray-200">125</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#e57875">N</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">NP<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#e5e550">L</span><span class="px-[4px] py-[2px] bg-gray-200">179</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#e5aacd">Q</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">NP<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#9ddde5">H</span><span class="px-[4px] py-[2px] bg-gray-200">195</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#878fe5">R</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">NP<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#e5e514">I</span><span class="px-[4px] py-[2px] bg-gray-200">246</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#e5e57c">V</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">NP<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#e583d8">S</span><span class="px-[4px] py-[2px] bg-gray-200">301</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#c2b553">G</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">NP<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#7fbb81">T</span><span class="px-[4px] py-[2px] bg-gray-200">418</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#e5e514">I</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">NP<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#b4a2e5">K</span><span class="px-[4px] py-[2px] bg-gray-200">428</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#878fe5">R</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">NP<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#e5e57c">V</span><span class="px-[4px] py-[2px] bg-gray-200">436</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#e5e514">I</span></span></li> </span></div></div><div><h2 class="py-1 my-1 font-semibold border-b">RdRp</h2><div><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">RdRp<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#e583d8">S</span><span class="px-[4px] py-[2px] bg-gray-200">6</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#e57875">N</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">RdRp<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#57cfe5">Y</span><span class="px-[4px] py-[2px] bg-gray-200">60</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#e57875">N</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">RdRp<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#e5e514">I</span><span class="px-[4px] py-[2px] bg-gray-200">223</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#b7e525">M</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">RdRp<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#e5e514">I</span><span class="px-[4px] py-[2px] bg-gray-200">261</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#b7e525">M</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">RdRp<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#e5e514">I</span><span class="px-[4px] py-[2px] bg-gray-200">505</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#7fbb81">T</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">RdRp<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#7fbb81">T</span><span class="px-[4px] py-[2px] bg-gray-200">767</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#db8070">A</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">RdRp<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#878fe5">R</span><span class="px-[4px] py-[2px] bg-gray-200">770</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#b4a2e5">K</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">RdRp<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#e5e514">I</span><span class="px-[4px] py-[2px] bg-gray-200">783</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#e5e57c">V</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">RdRp<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#b4a2e5">K</span><span class="px-[4px] py-[2px] bg-gray-200">809</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#878fe5">R</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">RdRp<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#c2b553">G</span><span class="px-[4px] py-[2px] bg-gray-200">812</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#e59c6c">E</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">RdRp<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#7fbb81">T</span><span class="px-[4px] py-[2px] bg-gray-200">876</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#e583d8">S</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">RdRp<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#e5774e">D</span><span class="px-[4px] py-[2px] bg-gray-200">993</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#e57875">N</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">RdRp<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#c2b553">G</span><span class="px-[4px] py-[2px] bg-gray-200">1029</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#e583d8">S</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">RdRp<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#db8070">A</span><span class="px-[4px] py-[2px] bg-gray-200">1038</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#7fbb81">T</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">RdRp<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#c2b553">G</span><span class="px-[4px] py-[2px] bg-gray-200">1047</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#e59c6c">E</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">RdRp<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#9ddde5">H</span><span class="px-[4px] py-[2px] bg-gray-200">1161</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#e57875">N</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">RdRp<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#e5774e">D</span><span class="px-[4px] py-[2px] bg-gray-200">1173</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#e57875">N</span></span></li> </span><span><li class="inline-block"><span class="rounded-[3px] font-mono text-xs overflow-auto"><span class="px-[4px] py-[2px] rounded-s-[3px] bg-gray-200">RdRp<!-- -->:</span><span class="px-[4px] py-[2px]" style="background:#e5e57c">V</span><span class="px-[4px] py-[2px] bg-gray-200">1228</span><span class="px-[4px] py-[2px] rounded-e-[3px]" style="background:#e5e514">I</span></span></li> </span><button class="underline">Show more</button></div></div></div></div></div><div class="text-sm my-1"><div class="font-medium text-gray-900 break-inside-avoid py-2">Deletions</div><div class="whitespace-normal text-gray-600 break-inside-avoid"><div class="whitespace-wrap"><span class="italic">None</span></div></div></div><div class="text-sm my-1"><div class="font-medium text-gray-900 break-inside-avoid py-2">Insertions</div><div class="whitespace-normal text-gray-600 break-inside-avoid"><div class="whitespace-wrap"><span class="italic">None</span></div></div></div></div></div></div></div><div class="mt-10"><button class="btn btn-sm m-4">Load sequences</button></div><hr class="my-4"/><div class="my-8"><h2 class="text-xl font-bold mb-3">Report an issue with this sequence or metadata</h2><a href="https://github.com/pathoplexus/curation_reports/issues/new?template=sequence-metadata-issue.md&title=%5Bcchf+-+PP_000RE4V.3%5D" class="btn btn-sm">Create GitHub issue</a></div><!--astro:end--></astro-island> </div> <hr class="border-t border-gray-1000"> <footer class="hidden sm:flex sm:z-6 sm:z-6 flex justify-between items-center 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