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Data Submission from Transcriptome Project
<!DOCTYPE html> <html lang="en"> <head> <meta charset="UTF-8" /> <meta property="og:title" content="Data Submission from Transcriptome Project" /> <meta property="og:url" content="https://www.ddbj.nig.ac.jp/ddbj/transcriptome-e.html" /> <meta property="og:description" content="This page shows steps of transcriptome project, categories of sequencedata and t..." /> <meta property6="og:image" content="/images/thumbnail/logo_ddbj_fb.png" /> <meta name="viewport" content="width=device-width, initial-scale=1.0" /> <title>Data Submission from Transcriptome Project</title> <script async src="https://www.google-analytics.com/analytics.js"></script> <script src="https://code.jquery.com/jquery-3.5.0.js" integrity="sha256-r/AaFHrszJtwpe+tHyNi/XCfMxYpbsRg2Uqn0x3s2zc=" crossorigin="anonymous"></script> <script src="https://cdnjs.cloudflare.com/ajax/libs/jquery.hoverintent/1.10.1/jquery.hoverIntent.min.js" 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class="page-title"> <p class="title -normal">DDBJ Annotated/Assembled Sequences</p> </div> <nav class="tab-menu-view"> <ul class="tabmenucontainer"> <li class=""> <a href="/ddbj/index-e.html">Home</a> </li> <li class=" -haschild"> <a href="/ddbj/submission-e.html">Submission</a> <ul> <li> <a href="/ddbj/submission-e.html">Before Submission</a> </li> <li> <a href="/ddbj/web-submission-e.html">Web submission</a> </li> <li> <a href="/ddbj/mss-e.html">Mass Submission</a> </li> <li> <a href="/ddbj/update-e.html">Data Update</a> </li> </ul> </li> <li class=" -haschild"> <a href="http://ddbj.nig.ac.jp/arsa/?lang=en">Search</a> <ul> <li> <a href="http://getentry.ddbj.nig.ac.jp/top-e.html">getentry</a> </li> <li> <a href="http://ddbj.nig.ac.jp/arsa/?lang=en">ARSA</a> </li> </ul> </li> <li class=" -haschild"> <a href="/ddbj/flat-file-e.html">Flat file</a> <ul> <li> <a href="/ddbj/feature-table-e.html">Feature Table</a> </li> <li> <a href="/ddbj/features-e.html">Feature key</a> </li> <li> <a 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sequences</a> </li> <li> <a href="/ddbj/metagenome-assembly-e.html">Metagenome Assembly</a> </li> <li> <a href="/ddbj/single-amplified-genome-e.html">Single amplified genome</a> </li> <li> <a href="/ddbj/htg-e.html">HTG</a> </li> <li> <a href="/ddbj/environmental-e.html">Environmental sample</a> </li> <li> <a href="/ddbj/env-e.html">ENV</a> </li> <li> <a href="/ddbj/tls-e.html">TLS</a> </li> <li> <a href="/ddbj/transcriptome-e.html">Data Submission from Transcriptome Project</a> </li> <li> <a href="/ddbj/tsa-e.html">TSA</a> </li> <li> <a href="/ddbj/est-e.html">EST</a> </li> <li> <a href="/ddbj/htc-e.html">HTC</a> </li> <li> <a href="/ddbj/tpa-e.html">Third Party Data (TPA)</a> </li> </ul> </li> <li class=""> <a href="/faq/en/index-e.html?tag=ddbj">FAQ</a> </li> <li class=" -haschild"> <a href="/ddbj/index-e.html">Other</a> <ul> <li> <a href="/ddbj/patent-data-e.html">Patent</a> </li> <li> <a href="/ddbj/mga-e.html">MGA</a> </li> </ul> </li> </ul> </nav> </div> </header> <section id="NavigationAndMainView"> <div class="inner"> <div class="subview"> <nav id="TableOfContents" class="internal-link"> </nav> </div> <section id="MainContentView" class="mainview"> <header class="header"> <nav class="breadcrumb-view"> <ul> <li> <a href="https://www.ddbj.nig.ac.jp/index-e.html">Home</a> </li> <li> <a href="https://www.ddbj.nig.ac.jp/ddbj/index-e.html">ddbj</a> </li> <li><a>Data Submission from Transcriptome Project</a></li> </ul> </nav> <h1 class="title">Data Submission from Transcriptome Project</h1> </header> <main class="md-content"> <p>This page shows steps of transcriptome project, categories of sequence data and their correspondences, briefly. <br /> The schematic diagram below indicates phases of typical transcriptome strategies. <br /> Also, please submit to <a href="/bioproject/index-e.html">BioProject</a> and <a href="/biosample/index-e.html">BioSample</a>, in case of using next-generation sequencing platforms.</p> <p><strong>Important:</strong> <a href="/policies-e.html#submission-of-human-data">Data submission of human subjects research</a></p> <p><img src="/assets/images/ddbj/transcriptome.png" alt="" title="" class="" /></p> <dl> <dt>[DRA] Raw outputs: data generated by next-generation sequencers</dt> <dd>In case of output data generated by next-generation sequencing platforms, submit to <a href="/dra/index-e.html">DDBJ Sequence Read Archive (DRA)</a>.</dd> </dl> <!-- [DTA] Chromatograms, Sequences, Qualities: data generated by sequencers based on Sanger method : In case of single-pass reads of DNA sequence chromatograms (traces), base calls, quality estimates, submit to [Trace Archive (DTA)](/dta/index-e.html ). --> <dl> <dt>[TSA] Contigs: assemblies (overlapping reads) and Scaffolds</dt> <dd>In case of assembled cDNA sequences, submit to <a href="/ddbj/mss-e.html">Mass Submission System</a> as <a href="/ddbj/tsa-e.html">TSA</a> data.</dd> <dt>[EST] Expressed Sequence Tags</dt> <dd>In case of single-pass cDNA sequences, submit to <a href="/ddbj/mss-e.html">Mass Submission System</a> as <a href="/ddbj/est-e.html">EST</a> data.</dd> <dt>[HTC] draft sequences of large clones</dt> <dd>In case of unfinished level, draft sequence data derived from cDNA libraries created using full length insert cDNA cloning methods, submit to <a href="/ddbj/mss-e.html">Mass Submission System</a> as <a href="/ddbj/htc-e.html">HTC</a> data.</dd> <dt>Finished sequences of cDNA clones</dt> <dd>Submit to <a href="/ddbj/mss-e.html">Mass Submission System</a> as general data or full length insert cDNAs.</dd> </dl> </main> <aside class="related-pages"> <h2 class="caption">Related pages</h2> <div class="navigation"> <nav> <ul> <li> <a href="/ddbj/genome-e.html">Data Submission from Genome Project</a> </li> <li> <a href="/ddbj/environmental-e.html">Submission of environmental sequences</a> </li> <li> <a href="/ddbj/tpa-e.html">Third Party Data (TPA)</a> </li> </ul> </nav> </div> </aside> </section> </div> </section> </div> 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