Software and Tools - Virological

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href="/c/novel-2019-coronavirus/software-and-tools/42"> <span itemprop='name'>Software and Tools</span> </a> </h1> <br/> <div class="topic-list-container" itemscope itemtype='http://schema.org/ItemList'> <meta itemprop='itemListOrder' content='http://schema.org/ItemListOrderDescending'> <table class='topic-list'> <thead> <tr> <th>Topic</th> <th></th> <th class="replies">Replies</th> <th class="views">Views</th> <th>Activity</th> </tr> </thead> <tbody> <tr class="topic-list-item"> <td class="main-link" itemprop='itemListElement' itemscope itemtype='http://schema.org/ListItem'> <meta itemprop='position' content='1'> <span class="link-top-line"> <a itemprop='url' href='https://virological.org/t/about-the-software-and-tools-category/481' class='title raw-link raw-topic-link'>About the Software and Tools category</a> </span> <div class="link-bottom-line"> <div class="discourse-tags"> </div> </div> </td> <td class='posters'> <a href="https://virological.org/u/arambaut" class="latest single"> <img width="25" height="25" src="/user_avatar/virological.org/arambaut/25/425_2.png" class="avatar" title='arambaut - Original Poster, Most Recent Poster' aria-label='arambaut - Original Poster, Most Recent Poster'> </a> </td> <td class="replies"> <span class='posts' title='posts'>0</span> </td> <td class="views"> <span class='views' title='views'>1969</span> </td> <td> May 13, 2020 </td> </tr> <tr class="topic-list-item"> <td class="main-link" itemprop='itemListElement' itemscope itemtype='http://schema.org/ListItem'> <meta itemprop='position' content='2'> <span class="link-top-line"> <a itemprop='url' href='https://virological.org/t/towards-pandemic-scale-ancestral-recombination-graphs-of-sars-cov-2/936' class='title raw-link raw-topic-link'>Towards Pandemic-Scale Ancestral Recombination Graphs of SARS-CoV-2</a> </span> <div class="link-bottom-line"> <div class="discourse-tags"> </div> </div> </td> <td class='posters'> <a href="https://virological.org/u/shing.zhan" class="latest single"> <img width="25" height="25" src="/letter_avatar_proxy/v4/letter/s/90ced4/25.png" class="avatar" title='shing.zhan - Original Poster, Most Recent Poster' aria-label='shing.zhan - Original Poster, Most Recent Poster'> </a> </td> <td class="replies"> <span class='posts' title='posts'>0</span> </td> <td class="views"> <span class='views' title='views'>3575</span> </td> <td> June 9, 2023 </td> </tr> <tr class="topic-list-item"> <td class="main-link" itemprop='itemListElement' itemscope itemtype='http://schema.org/ListItem'> <meta itemprop='position' content='3'> <span class="link-top-line"> <a itemprop='url' href='https://virological.org/t/wastewater-samples-cannot-be-used-for-genome-assembly/921' class='title raw-link raw-topic-link'>Wastewater samples CANNOT be used for genome assembly</a> </span> <div class="link-bottom-line"> <div class="discourse-tags"> </div> </div> </td> <td class='posters'> <a href="https://virological.org/u/gener" class="latest"> <img width="25" height="25" src="/letter_avatar_proxy/v4/letter/g/f14d63/25.png" class="avatar" title='gener - Original Poster, Most Recent Poster' aria-label='gener - Original Poster, Most Recent Poster'> </a> <a href="https://virological.org/u/Kristian_Andersen" class=""> <img width="25" height="25" src="/user_avatar/virological.org/kristian_andersen/25/521_2.png" class="avatar" title='Kristian_Andersen - Frequent Poster' aria-label='Kristian_Andersen - Frequent Poster'> </a> <a href="https://virological.org/u/alexcritschristoph" class=""> <img width="25" height="25" src="/letter_avatar_proxy/v4/letter/a/d6d6ee/25.png" class="avatar" title='alexcritschristoph - Frequent Poster' aria-label='alexcritschristoph - Frequent Poster'> </a> <a href="https://virological.org/u/theosanderson" class=""> <img width="25" height="25" src="/letter_avatar_proxy/v4/letter/t/e95f7d/25.png" class="avatar" title='theosanderson - Frequent Poster' aria-label='theosanderson - Frequent Poster'> </a> </td> <td class="replies"> <span class='posts' title='posts'>7</span> </td> <td class="views"> <span class='views' title='views'>7553</span> </td> <td> March 3, 2023 </td> </tr> <tr class="topic-list-item"> <td class="main-link" itemprop='itemListElement' itemscope itemtype='http://schema.org/ListItem'> <meta itemprop='position' content='4'> <span class="link-top-line"> <a itemprop='url' href='https://virological.org/t/issue-with-pipelines-using-bcftools-to-calling-consensus-in-low-coverage-regions/905' class='title raw-link raw-topic-link'>Issue with pipelines using bcftools to calling consensus in low-coverage regions</a> </span> <div class="link-bottom-line"> <div class="discourse-tags"> </div> </div> </td> <td class='posters'> <a href="https://virological.org/u/gkarthik" class=""> <img width="25" height="25" src="/user_avatar/virological.org/gkarthik/25/1271_2.png" class="avatar" title='gkarthik - Original Poster' aria-label='gkarthik - Original Poster'> </a> <a href="https://virological.org/u/Kristian_Andersen" class="latest"> <img width="25" height="25" src="/user_avatar/virological.org/kristian_andersen/25/521_2.png" class="avatar" title='Kristian_Andersen - Most Recent Poster' aria-label='Kristian_Andersen - Most Recent Poster'> </a> </td> <td class="replies"> <span class='posts' title='posts'>1</span> </td> <td class="views"> <span class='views' title='views'>6904</span> </td> <td> October 19, 2022 </td> </tr> <tr class="topic-list-item"> <td class="main-link" itemprop='itemListElement' itemscope itemtype='http://schema.org/ListItem'> <meta itemprop='position' content='5'> <span class="link-top-line"> <a itemprop='url' href='https://virological.org/t/using-varianthunter-for-detecting-emerging-sars-cov-2-variants/797' class='title raw-link raw-topic-link'>Using VariantHunter for detecting emerging SARS-CoV-2 variants</a> </span> <div class="link-bottom-line"> <div class="discourse-tags"> </div> </div> </td> <td class='posters'> <a href="https://virological.org/u/sunbrn" class="latest single"> <img width="25" height="25" src="/user_avatar/virological.org/sunbrn/25/1528_2.png" class="avatar" title='sunbrn - Original Poster, Most Recent Poster' aria-label='sunbrn - Original Poster, Most Recent Poster'> </a> </td> <td class="replies"> <span class='posts' title='posts'>0</span> </td> <td class="views"> <span class='views' title='views'>2715</span> </td> <td> May 11, 2022 </td> </tr> <tr class="topic-list-item"> <td class="main-link" itemprop='itemListElement' itemscope itemtype='http://schema.org/ListItem'> <meta itemprop='position' content='6'> <span class="link-top-line"> <a itemprop='url' href='https://virological.org/t/serratus-the-ultra-deep-search-to-discover-novel-coronaviruses/516' class='title raw-link raw-topic-link'>Serratus: The ultra-deep search to discover novel coronaviruses</a> </span> <div class="link-bottom-line"> <div class="discourse-tags"> </div> </div> </td> <td class='posters'> <a href="https://virological.org/u/ababaian" class="latest"> <img width="25" height="25" src="/user_avatar/virological.org/ababaian/25/951_2.png" class="avatar" title='ababaian - Original Poster, Most Recent Poster' aria-label='ababaian - Original Poster, Most Recent Poster'> </a> <a href="https://virological.org/u/daniel.streicker" class=""> <img width="25" height="25" src="/letter_avatar_proxy/v4/letter/d/f0a364/25.png" class="avatar" title='daniel.streicker - Frequent Poster' aria-label='daniel.streicker - Frequent Poster'> </a> <a href="https://virological.org/u/david_h_oconnor" class=""> <img width="25" height="25" src="/letter_avatar_proxy/v4/letter/d/ce7236/25.png" class="avatar" title='david_h_oconnor - Frequent Poster' aria-label='david_h_oconnor - Frequent Poster'> </a> </td> <td class="replies"> <span class='posts' title='posts'>7</span> </td> <td class="views"> <span class='views' title='views'>11337</span> </td> <td> October 11, 2021 </td> </tr> <tr class="topic-list-item"> <td class="main-link" itemprop='itemListElement' itemscope itemtype='http://schema.org/ListItem'> <meta itemprop='position' content='7'> <span class="link-top-line"> <a itemprop='url' href='https://virological.org/t/masking-strategies-for-sars-cov-2-alignments/480' class='title raw-link raw-topic-link'>Masking strategies for SARS-CoV-2 alignments</a> </span> <div class="link-bottom-line"> <div class="discourse-tags"> </div> </div> </td> <td class='posters'> <a href="https://virological.org/u/NicolaDeMaio" class="latest"> <img width="25" height="25" src="/letter_avatar_proxy/v4/letter/n/a5b964/25.png" class="avatar" title='NicolaDeMaio - Original Poster, Most Recent Poster' aria-label='NicolaDeMaio - Original Poster, Most Recent Poster'> </a> <a href="https://virological.org/u/gregcaporaso" class=""> <img width="25" height="25" src="/letter_avatar_proxy/v4/letter/g/b3f665/25.png" class="avatar" title='gregcaporaso - Frequent Poster' aria-label='gregcaporaso - Frequent Poster'> </a> <a href="https://virological.org/u/goldman" class=""> <img width="25" height="25" src="/user_avatar/virological.org/goldman/25/947_2.png" class="avatar" title='goldman - Frequent Poster' aria-label='goldman - Frequent Poster'> </a> <a href="https://virological.org/u/conorwalker" class=""> <img width="25" height="25" src="/letter_avatar_proxy/v4/letter/c/97f17d/25.png" class="avatar" title='conorwalker - Frequent Poster' aria-label='conorwalker - Frequent Poster'> </a> <a href="https://virological.org/u/mscotch" class=""> <img width="25" height="25" src="/user_avatar/virological.org/mscotch/25/824_2.png" class="avatar" title='mscotch - Frequent Poster' aria-label='mscotch - Frequent Poster'> </a> </td> <td class="replies"> <span class='posts' title='posts'>17</span> </td> <td class="views"> <span class='views' title='views'>20028</span> </td> <td> September 28, 2021 </td> </tr> <tr class="topic-list-item"> <td class="main-link" itemprop='itemListElement' itemscope itemtype='http://schema.org/ListItem'> <meta itemprop='position' content='8'> <span class="link-top-line"> <a itemprop='url' href='https://virological.org/t/covizu-rapid-analysis-and-visualization-of-the-global-diversity-of-sars-cov-2-genomes/678' class='title raw-link raw-topic-link'>CoVizu: Rapid analysis and visualization of the global diversity of SARS-CoV-2 genomes</a> </span> <div class="link-bottom-line"> <div class="discourse-tags"> </div> </div> </td> <td class='posters'> <a href="https://virological.org/u/apoon42" class="latest single"> <img width="25" height="25" src="/letter_avatar_proxy/v4/letter/a/848f3c/25.png" class="avatar" title='apoon42 - Original Poster, Most Recent Poster' aria-label='apoon42 - Original Poster, Most Recent Poster'> </a> </td> <td class="replies"> <span class='posts' title='posts'>0</span> </td> <td class="views"> <span class='views' title='views'>5355</span> </td> <td> April 12, 2021 </td> </tr> <tr class="topic-list-item"> <td class="main-link" itemprop='itemListElement' itemscope itemtype='http://schema.org/ListItem'> <meta itemprop='position' content='9'> <span class="link-top-line"> <a itemprop='url' href='https://virological.org/t/ready-to-use-global-platform-for-variant-detection-in-sars-cov-2/672' class='title raw-link raw-topic-link'>Ready-to-use global platform for variant detection in SARS-CoV-2</a> </span> <div class="link-bottom-line"> <div class="discourse-tags"> </div> </div> </td> <td class='posters'> <a href="https://virological.org/u/anekrut" class="latest single"> <img width="25" height="25" src="/user_avatar/virological.org/anekrut/25/702_2.png" class="avatar" title='anekrut - Original Poster, Most Recent Poster' aria-label='anekrut - Original Poster, Most Recent Poster'> </a> </td> <td class="replies"> <span class='posts' title='posts'>0</span> </td> <td class="views"> <span class='views' title='views'>2970</span> </td> <td> April 2, 2021 </td> </tr> <tr class="topic-list-item"> <td class="main-link" itemprop='itemListElement' itemscope itemtype='http://schema.org/ListItem'> <meta itemprop='position' content='10'> <span class="link-top-line"> <a itemprop='url' href='https://virological.org/t/integration-of-jbrowse-2-genome-browser-with-nextstrain/656' class='title raw-link raw-topic-link'>Integration of JBrowse 2 genome browser with Nextstrain</a> </span> <div class="link-bottom-line"> <div class="discourse-tags"> </div> </div> </td> <td class='posters'> <a href="https://virological.org/u/GMOD" class="latest single"> <img width="25" height="25" src="/letter_avatar_proxy/v4/letter/g/9fc29f/25.png" class="avatar" title='GMOD - Original Poster, Most Recent Poster' aria-label='GMOD - Original Poster, Most Recent Poster'> </a> </td> <td class="replies"> <span class='posts' title='posts'>0</span> </td> <td class="views"> <span class='views' title='views'>3835</span> </td> <td> March 16, 2021 </td> </tr> <tr class="topic-list-item"> <td class="main-link" itemprop='itemListElement' itemscope itemtype='http://schema.org/ListItem'> <meta itemprop='position' content='11'> <span class="link-top-line"> <a itemprop='url' href='https://virological.org/t/genomic-coordinates-for-b-1-1-7-p-1-and-b-1-351/606' class='title raw-link raw-topic-link'>Genomic coordinates for B.1.1.7, P.1, and B.1.351</a> </span> <div class="link-bottom-line"> <div class="discourse-tags"> </div> </div> </td> <td class='posters'> <a href="https://virological.org/u/anekrut" class=""> <img width="25" height="25" src="/user_avatar/virological.org/anekrut/25/702_2.png" class="avatar" title='anekrut - Original Poster' aria-label='anekrut - Original Poster'> </a> <a href="https://virological.org/u/arambaut" class="latest"> <img width="25" height="25" src="/user_avatar/virological.org/arambaut/25/425_2.png" class="avatar" title='arambaut - Most Recent Poster' aria-label='arambaut - Most Recent Poster'> </a> </td> <td class="replies"> <span class='posts' title='posts'>2</span> </td> <td class="views"> <span class='views' title='views'>5228</span> </td> <td> January 27, 2021 </td> </tr> <tr class="topic-list-item"> <td class="main-link" itemprop='itemListElement' itemscope itemtype='http://schema.org/ListItem'> <meta itemprop='position' content='12'> <span class="link-top-line"> <a itemprop='url' href='https://virological.org/t/a-resource-for-comparing-sars-cov2-to-other-coronaviruses-coordinate-mapping-and-residue-annotation/534' class='title raw-link raw-topic-link'>A resource for comparing SARS-CoV2 to other coronaviruses: Coordinate mapping and residue annotation</a> </span> <div class="link-bottom-line"> <div class="discourse-tags"> </div> </div> </td> <td class='posters'> <a href="https://virological.org/u/anekrut" class="latest single"> <img width="25" height="25" src="/user_avatar/virological.org/anekrut/25/702_2.png" class="avatar" title='anekrut - Original Poster, Most Recent Poster' aria-label='anekrut - Original Poster, Most Recent Poster'> </a> </td> <td class="replies"> <span class='posts' title='posts'>0</span> </td> <td class="views"> <span class='views' title='views'>4593</span> </td> <td> July 27, 2020 </td> </tr> <tr class="topic-list-item"> <td class="main-link" itemprop='itemListElement' itemscope itemtype='http://schema.org/ListItem'> <meta itemprop='position' content='13'> <span class="link-top-line"> <a itemprop='url' href='https://virological.org/t/new-online-resource-covid-19-cov-genetics-browser/548' class='title raw-link raw-topic-link'>New online resource: COVID-19 CoV Genetics browser</a> </span> <div class="link-bottom-line"> <div class="discourse-tags"> </div> </div> </td> <td class='posters'> <a href="https://virological.org/u/Alina" class="latest single"> <img width="25" height="25" src="/letter_avatar_proxy/v4/letter/a/f14d63/25.png" class="avatar" title='Alina - Original Poster, Most Recent Poster' aria-label='Alina - Original Poster, Most Recent Poster'> </a> </td> <td class="replies"> <span class='posts' title='posts'>0</span> </td> <td class="views"> <span class='views' title='views'>4992</span> </td> <td> September 3, 2020 </td> </tr> <tr class="topic-list-item"> <td class="main-link" itemprop='itemListElement' itemscope itemtype='http://schema.org/ListItem'> <meta itemprop='position' content='14'> <span class="link-top-line"> <a itemprop='url' href='https://virological.org/t/genome-sampler-reproducibly-sampling-sars-cov-2-genomes-across-time-geography-and-viral-diversity/523' class='title raw-link raw-topic-link'>Genome-sampler: reproducibly sampling SARS-CoV-2 genomes across time, geography, and viral diversity</a> </span> <div class="link-bottom-line"> <div class="discourse-tags"> </div> </div> </td> <td class='posters'> <a href="https://virological.org/u/gregcaporaso" class="latest single"> <img width="25" height="25" src="/letter_avatar_proxy/v4/letter/g/b3f665/25.png" class="avatar" title='gregcaporaso - Original Poster, Most Recent Poster' aria-label='gregcaporaso - Original Poster, Most Recent 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