wwPDB: All Deposition Resources

<!DOCTYPE html> <html lang="en"> <head> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1.0"> <meta name="description" content="wwPDB: Worldwide Protein Data Bank"> <meta name="author" content="wwPDB.org"> <link rel="shortcut icon" href="/favicon.ico"> <link href="/css/bootstrap-v3.1.1.min.css" rel="stylesheet"> <link href="/tools/font-awesome-4.4.0/css/font-awesome.min.css" rel="stylesheet"> <link href="/css/wwPDB.css?v=4" rel="stylesheet"> <link href='https://fonts.googleapis.com/css?family=Exo+2:600' rel='stylesheet' type='text/css'> <link href='https://fonts.googleapis.com/css?family=Roboto:300, 400,500,700' rel='stylesheet' type='text/css'> <link href='https://fonts.googleapis.com/css?family=Petit+Formal+Script' rel='stylesheet' type='text/css'>  <script async src="https://www.googletagmanager.com/gtag/js?id=G-5ED0CQCXV6"></script> <script> window.dataLayer = window.dataLayer || []; function gtag(){dataLayer.push(arguments);} gtag('js', new Date()); gtag('config', 'G-5ED0CQCXV6'); </script> <title>wwPDB: All Deposition Resources</title> </head> <body> <nav id='wwpdb-nav' class='navbar navbar-fixed-top hidden-print'> <div class='container'> <div class='navbar-header'> <div class='pull-left wwpdb-logo'> <a class='brand hidden-desktop' href='/'> <img src='https://cdn.rcsb.org/wwpdb/img/core/wwpdb-logo.png'></a> </div> <button type='button' data-toggle='collapse' data-target='#navbar' aria-expanded='false' aria-controls='navbar' class='navbar-toggle collapsed'> <span class='sr-only'>Toggle navigation</span> <span class='icon-bar'></span> <span class='icon-bar'></span> <span class='icon-bar'></span> </button> </div> <div id='navbar' class='collapse navbar-collapse'> <ul class='nav navbar-nav pull-right'> <li class='dropdown'> <a href='#' class='dropdown-toggle' data-toggle='dropdown'>Validation <b class='caret'></b></a> <ul class='dropdown-menu'> <li><a href='/validation/validation-reports' >Validation Reports</a></li> <li><a href='/validation/validation-servers' >Validation Servers</a></li> <li><a href='/validation/onedep-validation-web-service-interface' >OneDep Validation API</a></li> </ul> </li> <li class='dropdown'> <a href='#' class='dropdown-toggle' data-toggle='dropdown'>Deposition <b class='caret'></b></a> <ul class='dropdown-menu'> <li><a href='http://deposit.wwpdb.org/deposition/' target='_blank'>Deposit Structure</a></li> <li><a href='/deposition/system-information' >System Information</a></li> <li><a href='/deposition/tutorial' >Tutorial</a></li> <li><a href='/deposition/faq' >FAQ</a></li> <li><a href='/deposition/deposition-resources' >All Deposition Resources</a></li> </ul> </li> <li class='dropdown'> <a href='#' class='dropdown-toggle' data-toggle='dropdown'>Dictionaries <b class='caret'></b></a> <ul class='dropdown-menu'> <li><a href='http://mmcif.wwpdb.org' target='_blank'>PDBx/mmCIF</a></li> <li><a href='/data/ccd' >Chemical Component Dictionary</a></li> <li><a href='/data/bird' >Biologically Interesting Molecule Reference Dictionary (BIRD)</a></li> </ul> </li> <li class='dropdown'> <a href='#' class='dropdown-toggle' data-toggle='dropdown'>Documentation <b class='caret'></b></a> <ul class='dropdown-menu'> <li><a href='/documentation/new-format-for-pdb-ids' >Extended PDB ID With 12 Characters</a></li> <li><a href='/documentation/file-format' >File Format</a></li> <li><a href='/documentation/biocuration' >Deposition & Biocuration Policies</a></li> <li><a href='/documentation/remediation' >Remediation</a></li> <li><a href='/documentation/journals' >Instructions to Journals</a></li> </ul> </li> <li class='dropdown'> <a href='#' class='dropdown-toggle' data-toggle='dropdown'>Task Forces <b class='caret'></b></a> <ul class='dropdown-menu'> <li><a href='/task/validation-task-forces' >Validation Task Forces</a></li> <li><a href='/task/xray' >X-Ray Validation</a></li> <li><a href='/task/nmr' >NMR Validation</a></li> <li><a href='/task/em' >EM Validation</a></li> <li><a href='/task/sas' >Small Angle Scattering (SAS)</a></li> <li><a href='/task/mmcif' >PDBx/mmCIF Working Group</a></li> <li><a href='/task/hybrid' >Hybrid/Integrative Methods</a></li> <li><a href='/task/ligand-validation-workshop' >Ligand Validation Workshop</a></li> <li><a href='/task/modelcif' >ModelCIF Working Group</a></li> </ul> </li> <li class='dropdown'> <a href='#' class='dropdown-toggle' data-toggle='dropdown'>Downloads <b class='caret'></b></a> <ul class='dropdown-menu'> <li><a href='/ftp/pdb-ftp-sites' >PDB Archive</a></li> <li><a href='/ftp/pdb-versioned-ftp-site' >PDB Versioned Archive</a></li> <li><a href='/ftp/pdb-nextgen-archive-site' >PDB NextGen Archive </a></li> </ul> </li> <li class='dropdown'> <a href='#' class='dropdown-toggle' data-toggle='dropdown'>Statistics <b class='caret'></b></a> <ul class='dropdown-menu'> <li><a href='/stats/deposition' >Deposition Statistics</a></li> <li><a href='/stats/download' >Download Statistics</a></li> </ul> </li> <li class='dropdown'> <a href='#' class='dropdown-toggle' data-toggle='dropdown'>About <b class='caret'></b></a> <ul class='dropdown-menu'> <li><a href='/about/contact' >Contact Us</a></li> <li><a href='/about/cite-us' >Cite Us</a></li> <li><a href='/about/publications' >Publications</a></li> <li><a href='/about/advisory' >Advisory Committee</a></li> <li><a href='/about/agreement' >Agreement</a></li> <li><a href='/about/outreach' >Outreach</a></li> <li><a href='/about/faq' >FAQ</a></li> <li><a href='/about/privacy' >Privacy</a></li> <li><a href='/about/usage-policies' >Usage Policies</a></li> <li><a href='/pdb50' >PDB50</a></li> </ul> </li> <li class='wwpdb-foundation-logo'><a href='http://foundation.wwpdb.org/' target='_blank'> <img src='https://cdn.rcsb.org/wwpdb/img/core/wwpdb-foundation-logo-sm.png'></a> </li> </ul> </div> </nav> <div class="container belowFold"> <div class="col-md-3 hidden-print"> <ul class='nav nav-list wwpdb-sidenav'> <li class='menu-title'>Deposition</li> <li ><a href='http://deposit.wwpdb.org/deposition/' target='_blank' ><i class='glyphicon glyphicon-chevron-right' style='color:#888'></i> Deposit Structure</a></li> <li ><a href='/deposition/system-information' ><i class='glyphicon glyphicon-chevron-right' style='color:#888'></i> System Information</a></li> <li ><a href='/deposition/tutorial' ><i class='glyphicon glyphicon-chevron-right' style='color:#888'></i> Tutorial</a></li> <li ><a href='/deposition/faq' ><i class='glyphicon glyphicon-chevron-right' style='color:#888'></i> FAQ</a></li> <li class='active'><a href='/deposition/deposition-resources' ><i class='glyphicon glyphicon-chevron-right' style='color:#888'></i> All Deposition Resources</a></li> </ul> </div> <div class="col-md-9"> <div class="wwpdb-content">  <h1 class="center">Data Deposition Resources</h1> <h3 class="underline">Data Preparation</h3> <ul> <li>5 Easy Steps to PDB Deposition with OneDep Brochure    <span class="wwpdb-document-links"> <a href="https://cdn.rcsb.org/wwpdb/docs/deposition/one-dep-brochure-letter.pdf" target="_blank">PDF - US Letter</a> <a href="https://cdn.rcsb.org/wwpdb/docs/deposition/one-dep-brochure-a4.pdf" target="_blank">PDF - A4</a> </span> </li> <li><a href="preparing-pdbx-mmcif-files.php">Preparing PDBx/mmCIF files for Depositing Structures Large and Small</a></li> <li><a href="http://pdb-extract.wwpdb.org" target="_blank">pdb_extract</a>: Extract and harvest data in PDBx/mmCIF format from structure determination programs</li> <li><a href="http://sf-tool.wwpdb.org" target="_blank">SF-Tool</a>: Convert structure factor files among various formats</li> <li><a href="refmac-user-notice.php">REFMAC User Notice: Regarding partial B factors</a></li> </ul> <h3 class="underline">wwPDB OneDep System</h3> <p> The wwPDB partners are developing the next generation of deposition and annotation tools. This new system was created to enhance the wwPDB's ability to meet the evolving deposition requirements from the scientific community over the next decade. </p> <ul> <li>Deposition Tool for all methods (<a href="http://deposit.wwpdb.org/deposition/" target="_blank">RCSB PDB</a> | <a href="http://deposit-pdbe.wwpdb.org/deposition/" target="_blank">PDBe</a> | <a href="http://deposit-pdbj.wwpdb.org/deposition" target="_blank">PDBj</a>)</li> <li><a href="tutorial.php">Tutorials</a></li> <li><a href="faq.php">FAQ</a></li> </ul> <h3 class="underline">PDB-Dev and Integrative/Hybrid (I/H) Modeling</h3> <ul> <li><a href="https://pdb-dev.wwpdb.org/" target="_blank">PDB-Dev</a> is a prototype deposition and archiving system for structural models obtained through integrative/hybrid (I/H) methods.</li> </ul>  </div> </div> </div> <br> <footer class="footer"> <div class="container-fluid hidden-print" style="position: relative;"> <div class="row topFooter tinyPad"> <div class="ScreenLimitFooter"> <div class="col-sm-4"> <div class="smallMarginTop"> <a href="https://www.facebook.com/pages/Worldwide-PDB/223648640998643" target="_blank"><img src="https://cdn.rcsb.org/wwpdb/img/core/facebook.png" width="24" height="24"></a> <a href="https://www.youtube.com/channel/UCgM7zpapumhWHDMV11FIz0Q" target="_blank"><img src="https://cdn.rcsb.org/wwpdb/img/core/youtube-logo.png" width="24" height="24"></a> <a href="#"><img alt="RSS Feed for the Latest News" src="https://cdn.rcsb.org/wwpdb/img/core/rss.png" width="24" height="24"></a> <a href="mailto: info@wwpdb.org"><img src="https://cdn.rcsb.org/wwpdb/img/core/mail.png" width="24" height="24"></a> </div> <div class="smallMarginTop"> <a href="/news/news.php"> <p><a href="/news/news.php">News & Announcements</a></p> </a> </div> <div> <p><a href="https://lists.wwpdb.org/list/pdb-l.lists.wwpdb.org">Community Bulletin Board</a></p> </div> <div><a class='brand hidden-desktop' href='http://foundation.wwpdb.org/' target='_blank'><img src="https://cdn.rcsb.org/wwpdb/img/core/wwpdb-foundation-logo.png" class="logoLimit smallMarginTop"></a></div> </div> <div class="col-sm-4"> <div class="tinyMarginTop"> <h4><a class="h4-link" href="/download/downloads.php">Download Archive</a></h4> </div> <div class="smallMarginTop"> <a href="https://files.wwpdb.org/pub/pdb/">RCSB PDB</a> | <a href="https://ftp.ebi.ac.uk/pub/databases/pdb/">PDBe</a> | <a href="https://ftp.pdbj.org/pub/pdb/">PDBj</a> <br> <a href="/download/downloads.php">Instructions</a> </div> <div class="row"> <div class="col-sm-4"> <div class="tinyMarginTop"> <h4>Archive Snapshots</h4> </div> <div class="smallMarginTop"> <a href="https://s3snapshots.rcsb.org">RCSB PDB (https)</a> | <a href="ftp://snapshots.pdbj.org/">PDBj</a> </div> </div>  </div> </div> <div class="col-sm-3"> <h4> Cite wwPDB: </h4> <div class="smallMarginTop"> <em>Nature Structural Biology</em> <strong>10</strong>, 980 (2003)<br> <a href="http://dx.doi.org/10.1038/nsb1203-980" target="_blank">doi: 10.1038/nsb1203-980</a> <p class="tinyMarginTop"><a href="/about/publications.php">More publications</a></p> </div> </div> <div class="row" style="padding: 40px 0px 10px 10px"> <div class="col-sm-7"> <div class="tinyPad"> <h4>wwPDB Members:</h4> </div> <div class="col-sm-2 tinyPad"><a href="https://www.ebi.ac.uk/pdbe/emdb/" target="blank"><img src="https://cdn.rcsb.org/wwpdb/img/core/emdb.png" class="logoLimit img-responsive"></a></div> <div class="col-sm-2 tinyPad"><a href="https://www.pdbj.org/" target="blank"><img src="https://cdn.rcsb.org/wwpdb/img/core/pdbj.png" class="logoLimit img-responsive"></a></div> <div class="col-sm-2 tinyPad"><a href="http://bmrb.io/" target="blank"><img src="https://cdn.rcsb.org/wwpdb/img/core/bmrb.png" class="logoLimit img-responsive"></a></div> <div class="col-sm-2 tinyPad"><a href="https://www.rcsb.org/" target="blank"><img src="https://cdn.rcsb.org/wwpdb/img/core/rcsb-pdb.png" class="logoLimit img-responsive"></a></div> <div class="col-sm-2 tinyPad"><a href="https://www.ebi.ac.uk/pdbe/" target="blank"><img src="https://cdn.rcsb.org/wwpdb/img/core/pdbe.png" class="logoLimit img-responsive"></a></div> </div> <div class="col-sm-1"><br></br></div> <div class="col-sm-4"> <div class="row"> <div class="col-xs-6"> <a href='http://www.CoreTrustSeal.org' target='_blank'><img src="https://cdn.rcsb.org/wwpdb/img/homepage/CoreTrustSeal-logo-transparent-small.png" class='img-responsive seal' style="border-right: 1px solid #666; padding-right: 50px"/></a> </div> <div class="col-xs-6"> <a href='https://globalbiodata.org/' target='_blank'><img src="https://cdn.rcsb.org/wwpdb/img/homepage/GCBR-Logo-RGB.png" class='img-responsive seal'/></a> </div> </div> </div> </div> </div> <div class="row bottomFooter"> © wwPDB </div> </div> </footer>  <script type="text/javascript" src="/js/jquery-2.1.0.min.js"></script> <script type="text/javascript" src="/js/bootstrap-3.1.1.min.js"></script> <script type="text/javascript" src="/js/NavbarControl.js?v2"></script> <script> (function(i,s,o,g,r,a,m){i['GoogleAnalyticsObject']=r;i[r]=i[r]||function(){ (i[r].q=i[r].q||[]).push(arguments)},i[r].l=1*new Date();a=s.createElement(o), m=s.getElementsByTagName(o)[0];a.async=1;a.src=g;m.parentNode.insertBefore(a,m) })(window,document,'script','//www.google-analytics.com/analytics.js','ga'); ga('create', 'UA-62256915-1', 'auto'); ga('send', 'pageview'); </script> </body> </html>

CINXE.COM

wwPDB: All Deposition Resources