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id="mw-panel-toc-list"> <li id="toc-mw-content-text" class="vector-toc-list-item vector-toc-level-1"> <a href="#" class="vector-toc-link"> <div class="vector-toc-text">Početak</div> </a> </li> <li id="toc-Pojmovi_i_ontologija" class="vector-toc-list-item vector-toc-level-1 vector-toc-list-item-expanded"> <a class="vector-toc-link" href="#Pojmovi_i_ontologija"> <div class="vector-toc-text"> <span class="vector-toc-numb">1</span> <span>Pojmovi i ontologija</span> </div> </a> <button aria-controls="toc-Pojmovi_i_ontologija-sublist" class="cdx-button cdx-button--weight-quiet cdx-button--icon-only vector-toc-toggle"> <span class="vector-icon mw-ui-icon-wikimedia-expand"></span> <span>Uključi/isključi podsekciju Pojmovi i ontologija</span> </button> <ul id="toc-Pojmovi_i_ontologija-sublist" class="vector-toc-list"> <li id="toc-Primjeri_termina" class="vector-toc-list-item vector-toc-level-2"> <a class="vector-toc-link" href="#Primjeri_termina"> <div class="vector-toc-text"> <span class="vector-toc-numb">1.1</span> <span>Primjeri termina</span> </div> </a> <ul id="toc-Primjeri_termina-sublist" class="vector-toc-list"> </ul> </li> </ul> </li> <li id="toc-Označavanje" class="vector-toc-list-item vector-toc-level-1 vector-toc-list-item-expanded"> <a class="vector-toc-link" href="#Označavanje"> <div class="vector-toc-text"> <span class="vector-toc-numb">2</span> <span>Označavanje</span> </div> </a> <button aria-controls="toc-Označavanje-sublist" class="cdx-button cdx-button--weight-quiet cdx-button--icon-only vector-toc-toggle"> <span class="vector-icon mw-ui-icon-wikimedia-expand"></span> <span>Uključi/isključi podsekciju Označavanje</span> </button> <ul id="toc-Označavanje-sublist" class="vector-toc-list"> <li id="toc-Primjeri_označavanja" class="vector-toc-list-item vector-toc-level-2"> <a class="vector-toc-link" href="#Primjeri_označavanja"> <div class="vector-toc-text"> <span class="vector-toc-numb">2.1</span> <span>Primjeri označavanja</span> </div> </a> <ul id="toc-Primjeri_označavanja-sublist" class="vector-toc-list"> </ul> </li> </ul> </li> <li id="toc-Alati" class="vector-toc-list-item vector-toc-level-1 vector-toc-list-item-expanded"> <a class="vector-toc-link" href="#Alati"> <div class="vector-toc-text"> <span class="vector-toc-numb">3</span> <span>Alati</span> </div> </a> <ul id="toc-Alati-sublist" class="vector-toc-list"> </ul> </li> <li id="toc-Konzorcij" class="vector-toc-list-item vector-toc-level-1 vector-toc-list-item-expanded"> <a class="vector-toc-link" href="#Konzorcij"> <div class="vector-toc-text"> <span class="vector-toc-numb">4</span> <span>Konzorcij</span> </div> </a> <ul id="toc-Konzorcij-sublist" class="vector-toc-list"> </ul> </li> <li id="toc-Historija" class="vector-toc-list-item vector-toc-level-1 vector-toc-list-item-expanded"> <a class="vector-toc-link" href="#Historija"> <div class="vector-toc-text"> <span class="vector-toc-numb">5</span> <span>Historija</span> </div> </a> <ul id="toc-Historija-sublist" class="vector-toc-list"> </ul> </li> <li id="toc-Također_pogledajte" class="vector-toc-list-item vector-toc-level-1 vector-toc-list-item-expanded"> <a class="vector-toc-link" href="#Također_pogledajte"> <div class="vector-toc-text"> <span class="vector-toc-numb">6</span> <span>Također pogledajte</span> </div> </a> <ul id="toc-Također_pogledajte-sublist" class="vector-toc-list"> </ul> </li> <li id="toc-Reference" class="vector-toc-list-item vector-toc-level-1 vector-toc-list-item-expanded"> <a class="vector-toc-link" href="#Reference"> <div class="vector-toc-text"> <span class="vector-toc-numb">7</span> <span>Reference</span> </div> </a> <ul id="toc-Reference-sublist" class="vector-toc-list"> </ul> </li> <li id="toc-Vanjski_linkovi" class="vector-toc-list-item vector-toc-level-1 vector-toc-list-item-expanded"> <a class="vector-toc-link" href="#Vanjski_linkovi"> <div class="vector-toc-text"> <span class="vector-toc-numb">8</span> <span>Vanjski linkovi</span> </div> </a> <ul id="toc-Vanjski_linkovi-sublist" class="vector-toc-list"> </ul> </li> </ul> </div> </div> </nav> </div> </div> <div class="mw-content-container"> <main id="content" class="mw-body"> <header class="mw-body-header vector-page-titlebar"> <nav aria-label="Sadržaj" class="vector-toc-landmark"> <div id="vector-page-titlebar-toc" class="vector-dropdown vector-page-titlebar-toc vector-button-flush-left" > <input type="checkbox" id="vector-page-titlebar-toc-checkbox" role="button" aria-haspopup="true" data-event-name="ui.dropdown-vector-page-titlebar-toc" class="vector-dropdown-checkbox " aria-label="Uključi/isključi sadržaj" > <label id="vector-page-titlebar-toc-label" for="vector-page-titlebar-toc-checkbox" class="vector-dropdown-label cdx-button cdx-button--fake-button cdx-button--fake-button--enabled cdx-button--weight-quiet cdx-button--icon-only " aria-hidden="true" ><span class="vector-icon mw-ui-icon-listBullet mw-ui-icon-wikimedia-listBullet"></span> <span class="vector-dropdown-label-text">Uključi/isključi sadržaj</span> </label> <div class="vector-dropdown-content"> <div id="vector-page-titlebar-toc-unpinned-container" class="vector-unpinned-container"> </div> </div> </div> </nav> <h1 id="firstHeading" class="firstHeading mw-first-heading"><span class="mw-page-title-main">Ontologija gena</span></h1> <div id="p-lang-btn" class="vector-dropdown mw-portlet mw-portlet-lang" > <input type="checkbox" id="p-lang-btn-checkbox" role="button" aria-haspopup="true" data-event-name="ui.dropdown-p-lang-btn" class="vector-dropdown-checkbox mw-interlanguage-selector" aria-label="Idi na članak na drugom jeziku. Dostupno na 23 jezika" > <label id="p-lang-btn-label" for="p-lang-btn-checkbox" class="vector-dropdown-label cdx-button cdx-button--fake-button cdx-button--fake-button--enabled cdx-button--weight-quiet cdx-button--action-progressive mw-portlet-lang-heading-23" aria-hidden="true" ><span class="vector-icon mw-ui-icon-language-progressive mw-ui-icon-wikimedia-language-progressive"></span> <span class="vector-dropdown-label-text">23 jezika</span> </label> <div class="vector-dropdown-content"> <div class="vector-menu-content"> <ul class="vector-menu-content-list"> <li class="interlanguage-link interwiki-ar mw-list-item"><a href="https://ar.wikipedia.org/wiki/%D8%B9%D9%84%D9%85_%D8%A7%D9%84%D9%88%D8%AC%D9%88%D8%AF_%D8%A7%D9%84%D8%AC%D9%8A%D9%86%D9%8A" title="علم الوجود الجيني – arapski" lang="ar" hreflang="ar" data-title="علم الوجود الجيني" data-language-autonym="العربية" data-language-local-name="arapski" class="interlanguage-link-target"><span>العربية</span></a></li><li class="interlanguage-link interwiki-ca mw-list-item"><a href="https://ca.wikipedia.org/wiki/Gene_Ontology" title="Gene Ontology – katalonski" lang="ca" hreflang="ca" data-title="Gene Ontology" data-language-autonym="Català" data-language-local-name="katalonski" class="interlanguage-link-target"><span>Català</span></a></li><li class="interlanguage-link interwiki-de mw-list-item"><a href="https://de.wikipedia.org/wiki/Gene_Ontology" title="Gene Ontology – njemački" lang="de" hreflang="de" data-title="Gene Ontology" data-language-autonym="Deutsch" data-language-local-name="njemački" class="interlanguage-link-target"><span>Deutsch</span></a></li><li class="interlanguage-link interwiki-el mw-list-item"><a href="https://el.wikipedia.org/wiki/%CE%9F%CE%BD%CF%84%CE%BF%CE%BB%CE%BF%CE%B3%CE%AF%CE%B1_%CE%93%CE%BF%CE%BD%CE%B9%CE%B4%CE%AF%CF%89%CE%BD" title="Οντολογία Γονιδίων – grčki" lang="el" hreflang="el" data-title="Οντολογία Γονιδίων" data-language-autonym="Ελληνικά" data-language-local-name="grčki" class="interlanguage-link-target"><span>Ελληνικά</span></a></li><li class="interlanguage-link interwiki-en mw-list-item"><a href="https://en.wikipedia.org/wiki/Gene_Ontology" title="Gene Ontology – engleski" lang="en" hreflang="en" data-title="Gene Ontology" data-language-autonym="English" data-language-local-name="engleski" class="interlanguage-link-target"><span>English</span></a></li><li class="interlanguage-link interwiki-es mw-list-item"><a href="https://es.wikipedia.org/wiki/Ontolog%C3%ADa_g%C3%A9nica" title="Ontología génica – španski" lang="es" hreflang="es" data-title="Ontología génica" data-language-autonym="Español" data-language-local-name="španski" class="interlanguage-link-target"><span>Español</span></a></li><li class="interlanguage-link interwiki-fa mw-list-item"><a href="https://fa.wikipedia.org/wiki/%D9%87%D8%B3%D8%AA%DB%8C%E2%80%8C%D8%B4%D9%86%D8%A7%D8%B3%DB%8C_%DA%98%D9%86" title="هستی‌شناسی ژن – perzijski" lang="fa" hreflang="fa" data-title="هستی‌شناسی ژن" data-language-autonym="فارسی" data-language-local-name="perzijski" class="interlanguage-link-target"><span>فارسی</span></a></li><li class="interlanguage-link interwiki-fr mw-list-item"><a href="https://fr.wikipedia.org/wiki/Gene_Ontology" title="Gene Ontology – francuski" lang="fr" hreflang="fr" data-title="Gene Ontology" data-language-autonym="Français" data-language-local-name="francuski" class="interlanguage-link-target"><span>Français</span></a></li><li class="interlanguage-link interwiki-gl mw-list-item"><a href="https://gl.wikipedia.org/wiki/Gene_Ontology" title="Gene Ontology – galicijski" lang="gl" hreflang="gl" data-title="Gene Ontology" data-language-autonym="Galego" data-language-local-name="galicijski" class="interlanguage-link-target"><span>Galego</span></a></li><li class="interlanguage-link interwiki-he mw-list-item"><a href="https://he.wikipedia.org/wiki/%D7%90%D7%95%D7%A0%D7%98%D7%95%D7%9C%D7%95%D7%92%D7%99%D7%99%D7%AA_%D7%92%D7%A0%D7%99%D7%9D" title="אונטולוגיית גנים – hebrejski" lang="he" hreflang="he" data-title="אונטולוגיית גנים" data-language-autonym="עברית" data-language-local-name="hebrejski" class="interlanguage-link-target"><span>עברית</span></a></li><li class="interlanguage-link interwiki-hr mw-list-item"><a href="https://hr.wikipedia.org/wiki/Genska_ontologija" title="Genska ontologija – hrvatski" lang="hr" hreflang="hr" data-title="Genska ontologija" data-language-autonym="Hrvatski" data-language-local-name="hrvatski" class="interlanguage-link-target"><span>Hrvatski</span></a></li><li class="interlanguage-link interwiki-it mw-list-item"><a href="https://it.wikipedia.org/wiki/Gene_Ontology" title="Gene Ontology – italijanski" lang="it" hreflang="it" data-title="Gene Ontology" data-language-autonym="Italiano" data-language-local-name="italijanski" class="interlanguage-link-target"><span>Italiano</span></a></li><li class="interlanguage-link interwiki-ja mw-list-item"><a href="https://ja.wikipedia.org/wiki/%E9%81%BA%E4%BC%9D%E5%AD%90%E3%82%AA%E3%83%B3%E3%83%88%E3%83%AD%E3%82%B8%E3%83%BC" title="遺伝子オントロジー – japanski" lang="ja" hreflang="ja" data-title="遺伝子オントロジー" data-language-autonym="日本語" data-language-local-name="japanski" class="interlanguage-link-target"><span>日本語</span></a></li><li class="interlanguage-link interwiki-ko mw-list-item"><a href="https://ko.wikipedia.org/wiki/%EC%9C%A0%EC%A0%84%EC%9E%90_%EC%98%A8%ED%86%A8%EB%A1%9C%EC%A7%80" title="유전자 온톨로지 – korejski" lang="ko" hreflang="ko" data-title="유전자 온톨로지" data-language-autonym="한국어" data-language-local-name="korejski" class="interlanguage-link-target"><span>한국어</span></a></li><li class="interlanguage-link interwiki-nl mw-list-item"><a href="https://nl.wikipedia.org/wiki/Gene_Ontology" title="Gene Ontology – nizozemski" lang="nl" hreflang="nl" data-title="Gene Ontology" data-language-autonym="Nederlands" data-language-local-name="nizozemski" class="interlanguage-link-target"><span>Nederlands</span></a></li><li class="interlanguage-link interwiki-pt mw-list-item"><a href="https://pt.wikipedia.org/wiki/Ontologia_gen%C3%A9tica" title="Ontologia genética – portugalski" lang="pt" hreflang="pt" data-title="Ontologia genética" data-language-autonym="Português" data-language-local-name="portugalski" class="interlanguage-link-target"><span>Português</span></a></li><li class="interlanguage-link interwiki-ro mw-list-item"><a href="https://ro.wikipedia.org/wiki/Ontologia_genei" title="Ontologia genei – rumunski" lang="ro" hreflang="ro" data-title="Ontologia genei" data-language-autonym="Română" data-language-local-name="rumunski" class="interlanguage-link-target"><span>Română</span></a></li><li class="interlanguage-link interwiki-ru mw-list-item"><a href="https://ru.wikipedia.org/wiki/%D0%93%D0%B5%D0%BD%D0%BD%D0%B0%D1%8F_%D0%BE%D0%BD%D1%82%D0%BE%D0%BB%D0%BE%D0%B3%D0%B8%D1%8F" title="Генная онтология – ruski" lang="ru" hreflang="ru" data-title="Генная онтология" data-language-autonym="Русский" data-language-local-name="ruski" class="interlanguage-link-target"><span>Русский</span></a></li><li class="interlanguage-link interwiki-sh mw-list-item"><a href="https://sh.wikipedia.org/wiki/Ontologija_gena" title="Ontologija gena – srpskohrvatski" lang="sh" hreflang="sh" data-title="Ontologija gena" data-language-autonym="Srpskohrvatski / српскохрватски" data-language-local-name="srpskohrvatski" class="interlanguage-link-target"><span>Srpskohrvatski / српскохрватски</span></a></li><li class="interlanguage-link interwiki-sr mw-list-item"><a href="https://sr.wikipedia.org/wiki/Ontologija_gena" title="Ontologija gena – srpski" lang="sr" hreflang="sr" data-title="Ontologija gena" data-language-autonym="Српски / srpski" data-language-local-name="srpski" class="interlanguage-link-target"><span>Српски / srpski</span></a></li><li class="interlanguage-link interwiki-tr mw-list-item"><a href="https://tr.wikipedia.org/wiki/Gen_Ontolojisi" title="Gen Ontolojisi – turski" lang="tr" hreflang="tr" data-title="Gen Ontolojisi" data-language-autonym="Türkçe" data-language-local-name="turski" class="interlanguage-link-target"><span>Türkçe</span></a></li><li class="interlanguage-link interwiki-uk mw-list-item"><a href="https://uk.wikipedia.org/wiki/%D0%9E%D0%BD%D1%82%D0%BE%D0%BB%D0%BE%D0%B3%D1%96%D1%8F_%D0%B3%D0%B5%D0%BD%D0%B0" title="Онтологія гена – ukrajinski" lang="uk" hreflang="uk" data-title="Онтологія гена" data-language-autonym="Українська" data-language-local-name="ukrajinski" class="interlanguage-link-target"><span>Українська</span></a></li><li class="interlanguage-link interwiki-zh mw-list-item"><a href="https://zh.wikipedia.org/wiki/%E5%9F%BA%E5%9B%A0%E6%9C%AC%E4%BD%93" title="基因本体 – kineski" lang="zh" hreflang="zh" data-title="基因本体" data-language-autonym="中文" data-language-local-name="kineski" class="interlanguage-link-target"><span>中文</span></a></li> </ul> <div class="after-portlet after-portlet-lang"><span class="wb-langlinks-edit wb-langlinks-link"><a href="https://www.wikidata.org/wiki/Special:EntityPage/Q135085#sitelinks-wikipedia" title="Uredi međujezičke linkove" class="wbc-editpage">Uredi veze</a></span></div> </div> </div> </div> </header> <div class="vector-page-toolbar"> <div class="vector-page-toolbar-container"> <div id="left-navigation"> <nav aria-label="Imenski prostori"> <div id="p-associated-pages" class="vector-menu vector-menu-tabs mw-portlet mw-portlet-associated-pages" > <div class="vector-menu-content"> <ul class="vector-menu-content-list"> <li id="ca-nstab-main" class="selected vector-tab-noicon mw-list-item"><a href="/wiki/Ontologija_gena" title="Prikaži stranicu sa sadržajem [c]" accesskey="c"><span>Stranica</span></a></li><li id="ca-talk" class="new 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class="infobox vcard"><tbody><tr><th colspan="2" class="infobox-above fn org">Ontologija gena/Genska ontologija</th></tr><tr><td colspan="2" class="infobox-image"><span typeof="mw:File"><a href="/wiki/Datoteka:Database.png" class="mw-file-description"><img src="//upload.wikimedia.org/wikipedia/commons/3/38/Database.png" decoding="async" width="30" height="30" class="mw-file-element" data-file-width="16" data-file-height="16" /></a></span></td></tr><tr><th scope="row" class="infobox-label" style="padding-right:0.6em;">Skraćenica</th><td class="infobox-data nickname"><b>GO</b></td></tr><tr><th scope="row" class="infobox-label" style="padding-right:0.6em;">Datum osnivanja</th><td class="infobox-data note">1998.</td></tr><tr><th scope="row" class="infobox-label" style="padding-right:0.6em;">Vrsta</th><td class="infobox-data">Biološka baza ontoloških podataka</td></tr><tr><th scope="row" class="infobox-label" style="padding-right:0.6em;">Status</th><td class="infobox-data">Aktivna</td></tr><tr><th scope="row" class="infobox-label" style="padding-right:0.6em;">Glavno sjedište</th><td class="infobox-data label">Slobodni pristup</td></tr><tr><th scope="row" class="infobox-label" style="padding-right:0.6em;">Članstvo</th><td class="infobox-data">Globalno</td></tr><tr><th scope="row" class="infobox-label" style="padding-right:0.6em;">Jezik</th><td class="infobox-data"><a href="/wiki/Engleski_jezik" title="Engleski jezik">Engleski</a></td></tr><tr><th scope="row" class="infobox-label" style="padding-right:0.6em;">Glavni organ</th><td class="infobox-data">Konzorcij za ontologiju gena</td></tr><tr><th scope="row" class="infobox-label" style="padding-right:0.6em;"><abbr title="Broj">Br.</abbr> volontera</th><td class="infobox-data">Neograničen</td></tr><tr><th scope="row" class="infobox-label" style="padding-right:0.6em;">Veb-sajt</th><td class="infobox-data"><a rel="nofollow" class="external free" href="http://geneontology.org/">http://geneontology.org/</a></td></tr></tbody></table> <p><b>Ontologija gena</b> (<a href="/wiki/Engleski" class="mw-redirect" title="Engleski">eng.</a> <i>Gene Ontology</i>: <b>GO</b>) glavna je <a href="/wiki/Bioinformatika" title="Bioinformatika">bioinformatička</a> inicijativa za objedinjavanje zastupljenosti atributa <a href="/wiki/Gen" title="Gen">gena</a> i <a href="/w/index.php?title=Genski_proizvod&action=edit&redlink=1" class="new" title="Genski proizvod (stranica ne postoji)">genskih proizvoda</a> u svim <a href="/wiki/Vrsta" class="mw-disambig" title="Vrsta">vrstama</a>.<sup id="cite_ref-pmid17984083_1-0" class="reference"><a href="#cite_note-pmid17984083-1"><span class="cite-bracket">[</span>1<span class="cite-bracket">]</span></a></sup> Preciznije, cilj projekta je </p> <ol><li>održavanje i razvoj svog <a href="/w/index.php?title=Kontrolirani_rje%C4%8Dnik&action=edit&redlink=1" class="new" title="Kontrolirani rječnik (stranica ne postoji)">kontroliranog rječnika</a> gena i svojstava genskih proizvoda;</li> <li><a href="/wiki/Ozna%C4%8Davanje_gena" title="Označavanje gena">označavanje</a> gena i genskih proizvoda, te asimilacija i širenje podatke o bilješkama;</li> <li>pružanje alata za lahak pristup svim aspektima podataka predviđenih projektom i omogućavanje funkcionalne interpretacije eksperimentalnih podataka koristeći GO, naprimjer putem analize obogaćenja.<sup id="cite_ref-GO_2-0" class="reference"><a href="#cite_note-GO-2"><span class="cite-bracket">[</span>2<span class="cite-bracket">]</span></a></sup><sup id="cite_ref-GaudetŠkunca2017_3-0" class="reference"><a href="#cite_note-GaudetŠkunca2017-3"><span class="cite-bracket">[</span>3<span class="cite-bracket">]</span></a></sup> GO je dio većeg napora u klasifikaciji, <a href="/w/index.php?title=Otvorena_biomedicinska_ontologija&action=edit&redlink=1" class="new" title="Otvorena biomedicinska ontologija (stranica ne postoji)">Otvorene biomedicinske ontologije</a>, jedan od prvih članova kandidata za <a href="/w/index.php?title=OBO_livnica&action=edit&redlink=1" class="new" title="OBO livnica (stranica ne postoji)">OBO livnicu</a>.<sup id="cite_ref-pmid17989687_4-0" class="reference"><a href="#cite_note-pmid17989687-4"><span class="cite-bracket">[</span>4<span class="cite-bracket">]</span></a></sup></li></ol> <p>Dok se <a href="/wiki/Ozna%C4%8Davanje_gena" title="Označavanje gena">označavanje gena</a> fokusira na gene i genske proizvode, ontologija gena usredotočuje se na funkciju gena i genskih proizvoda. GO također proširuje napore koristeći <a href="/w/index.php?title=Jezik_markiranja&action=edit&redlink=1" class="new" title="Jezik markiranja (stranica ne postoji)">jezik markiranja</a> za izradu podataka (ne samo gena i njihovih proizvoda već i kuriranih atributa) <a href="/w/index.php?title=Ma%C5%A1inski_%C4%8Ditljivi_podaci&action=edit&redlink=1" class="new" title="Mašinski čitljivi podaci (stranica ne postoji)">mašinski čitljivih</a>, i to na način koji je objedinjen u svim <a href="/wiki/Vrsta" class="mw-disambig" title="Vrsta">vrstama</a> (dok se konvencije genske nomenklature razlikuju u zavisnosti od biološkog <a href="/wiki/Takson" title="Takson">taksona</a>). </p> <meta property="mw:PageProp/toc" /> <div class="mw-heading mw-heading2"><h2 id="Pojmovi_i_ontologija">Pojmovi i ontologija</h2><span class="mw-editsection"><span class="mw-editsection-bracket">[</span><a href="/w/index.php?title=Ontologija_gena&veaction=edit&section=1" title="Uredi odlomak "Pojmovi i ontologija"" class="mw-editsection-visualeditor"><span>uredi</span></a><span class="mw-editsection-divider"> | </span><a href="/w/index.php?title=Ontologija_gena&action=edit&section=1" title="Edit section's source code: Pojmovi i ontologija"><span>uredi izvor</span></a><span class="mw-editsection-bracket">]</span></span></div> <p>S praktičnog gledišta, ontologija je prikaz nečega o čemu znamo. "Ontologije" se sastoje od prikaza stvari koje se mogu otkriti ili direktno uočiti, kao i odnosa između tih stvari. </p><p>U biologiji i srodnim domenama ne postoji univerzalna standardna terminologija, a upotreba izraza može biti specifična za vrstu, područje istraživanja ili čak određenu istraživačku skupinu. To otežava komunikaciju i razmjenu podataka. Projekt genske ontologije pruža <a href="/w/index.php?title=Ontologija_(bioinformatika)&action=edit&redlink=1" class="new" title="Ontologija (bioinformatika) (stranica ne postoji)">ontologiju</a> definiranih pojmova koji predstavljaju svojstva <a href="/w/index.php?title=Genski_proizvod&action=edit&redlink=1" class="new" title="Genski proizvod (stranica ne postoji)">genskog proizvoda</a>. Ontologija pokriva tri domena: </p> <ul><li><b><a href="/w/index.php?title=%C4%86elijska_komponenta&action=edit&redlink=1" class="new" title="Ćelijska komponenta (stranica ne postoji)">ćelijska komponenta</a></b>, dijelove <a href="/wiki/%C4%86elije_(biologija)" class="mw-redirect" title="Ćelije (biologija)">ćelije</a> ili njenog <a href="/wiki/Van%C4%87elijski_prostor" class="mw-redirect" title="Vanćelijski prostor">vanćelijskog</a> okruženja;</li> <li><b>molekulska funkcija</b>, elementarne aktivnosti genskog proizvoda na molekulSKom nivou, poput vezanja ili <a href="/wiki/Kataliza" title="Kataliza">kataliza</a>;</li> <li><b><a href="/wiki/Biolo%C5%A1ki_proces" title="Biološki proces">biološki proces</a></b>, operacije ili skupove molekulskih događaja s definiranim početkom i krajem, koji se odnose na funkcioniranje integriranih životnih jedinica: ćelije, <a href="/wiki/Tkivo" title="Tkivo">tkiva</a>, <a href="/wiki/Organ_(anatomija)" title="Organ (anatomija)">organi</a> i <a href="/wiki/Organizam" class="mw-redirect" title="Organizam">organizmi</a>.</li></ul> <p>Svaki GO pojam u ontologiji ima svoj naziv, koji može biti: </p> <ul><li>riječ ili niz riječi;</li> <li>jedinstveni alfanumerički identifikator;</li> <li>definicija sa navedenim izvorima, i</li> <li>ontologija koja ukazuje na domen kojem pripada.</li></ul> <p>Termini mogu imati i sinonime, koji se klasificiraju kao tačno ekvivalentni nazivu, širi, uži ili povezani; reference na ekvivalentne koncepte u drugim bazama podataka i komentari o značenju ili upotrebi izraza. GO ontologija je strukturirana kao <a href="/w/index.php?title=Usmjereni_acikli%C4%8Dni_grafikon&action=edit&redlink=1" class="new" title="Usmjereni aciklični grafikon (stranica ne postoji)">usmjereni aciklični grafikon</a>, a svaki pojam je definirao <a href="/w/index.php?title=Odnos_(matematika)&action=edit&redlink=1" class="new" title="Odnos (matematika) (stranica ne postoji)">odnose</a> sa jednim ili više drugih pojmova u istm domenu, a ponekad i na drugim domenima. GO rječnik je dizajniran da bude neutralan prema vrstama i uključuje termine koji se primjenjuju na <a href="/wiki/Prokariot" class="mw-redirect" title="Prokariot">prokariote</a> i <a href="/wiki/Eukariot" class="mw-redirect" title="Eukariot">eukariote</a>, <a href="/wiki/Jedno%C4%87elijski_organizam" title="Jednoćelijski organizam">pojedinačne</a> i <a href="/wiki/Vi%C5%A1e%C4%87elijski_organizam" class="mw-redirect" title="Višećelijski organizam">višećelijse organizme</a>. </p><p>GO nije statična, a dopune, ispravke i izmjene predlažu i traže od njih članovi istraživačkih i anotacijskih zajednica, kao i oni koji su direktno uključeni u GO projekt.<sup id="cite_ref-Lovering2017_5-0" class="reference"><a href="#cite_note-Lovering2017-5"><span class="cite-bracket">[</span>5<span class="cite-bracket">]</span></a></sup> Naprimjer, komentator može zatražiti određeni termin koji predstavlja metabolički put ili se dio ontologije može revidirati uz pomoć stručnjaka iz zajednice (npr.<sup id="cite_ref-pmid17267433_6-0" class="reference"><a href="#cite_note-pmid17267433-6"><span class="cite-bracket">[</span>6<span class="cite-bracket">]</span></a></sup>). Predložene izmjene pregledaju urednici ontologije i primjenjuju se prema potrebi. </p><p>Datoteke GO ontologije i napomena su besplatno dostupne na web stranici GO<sup id="cite_ref-urlGene_Ontology_Resource_7-0" class="reference"><a href="#cite_note-urlGene_Ontology_Resource-7"><span class="cite-bracket">[</span>7<span class="cite-bracket">]</span></a></sup> in a number of formats, or can be accessed online using the GO browser <a href="/w/index.php?title=AmiGO&action=edit&redlink=1" class="new" title="AmiGO (stranica ne postoji)">AmiGO</a>. Projekt Ontologija gena također nudi mapiranje svojih pojmova za preuzimanje u druge sisteme klasifikacije. </p> <div class="mw-heading mw-heading3"><h3 id="Primjeri_termina">Primjeri termina</h3><span class="mw-editsection"><span class="mw-editsection-bracket">[</span><a href="/w/index.php?title=Ontologija_gena&veaction=edit&section=2" title="Uredi odlomak "Primjeri termina"" class="mw-editsection-visualeditor"><span>uredi</span></a><span class="mw-editsection-divider"> | </span><a href="/w/index.php?title=Ontologija_gena&action=edit&section=2" title="Edit section's source code: Primjeri termina"><span>uredi izvor</span></a><span class="mw-editsection-bracket">]</span></span></div> <dl><dd>id: GO:0000016</dd> <dd>ime: laktazna aktivnost</dd> <dd>ontologija: molekulska_funkcija</dd> <dd>def: "Kataliza reakcije: laktoza + H2O=D-glukoza + D-galaktoza". [EC:3.2.1.108]</dd> <dd>sinonim: "lactase-phlorizin hydrolase activity" BROAD [EC:3.2.1.108]</dd> <dd>sinonim: "aktivnost laktoza-galaktohidrolazew" EXACT [EC:3.2.1.108]</dd> <dd>xref: EC:3.2.1.108</dd> <dd>xref: MetaCyc:LACTASE-RXN</dd> <dd>xref: Reaktom:20536</dd> <dd>is_a: GO:0004553 ! hidrolazma aktivnost, hidroliziranje spojeva O-glikozila</dd></dl> <p>Podatak o izvoru:<sup id="cite_ref-8" class="reference"><a href="#cite_note-8"><span class="cite-bracket">[</span>8<span class="cite-bracket">]</span></a></sup> </p> <div class="mw-heading mw-heading2"><h2 id="Označavanje"><span id="Ozna.C4.8Davanje"></span>Označavanje</h2><span class="mw-editsection"><span class="mw-editsection-bracket">[</span><a href="/w/index.php?title=Ontologija_gena&veaction=edit&section=3" title="Uredi odlomak "Označavanje"" class="mw-editsection-visualeditor"><span>uredi</span></a><span class="mw-editsection-divider"> | </span><a href="/w/index.php?title=Ontologija_gena&action=edit&section=3" title="Edit section's source code: Označavanje"><span>uredi izvor</span></a><span class="mw-editsection-bracket">]</span></span></div> <p><a href="/wiki/Ozna%C4%8Davanje_genoma" class="mw-redirect" title="Označavanje genoma">Označavanje genoma</a> obuhvata praksu pribavljanja podataka o genskom proizvodu, a GO oznake za to koriste termine iz GO. Bilješke kustosa GO integrirane su i distribuirane na web stranici GO, gdje se mogu direktno preuzeti ili pregledati na mreži pomoću AmiGO.<sup id="cite_ref-AmiGO_9-0" class="reference"><a href="#cite_note-AmiGO-9"><span class="cite-bracket">[</span>9<span class="cite-bracket">]</span></a></sup> Pored identifikatora genskog proizvoda i relevantnog izraza GO, GO oznake imaju najmanje sljedeće podatke: </p> <ul><li><i>Referenca </i> korištena za izradu napomena (npr. članak u časopisu);</li> <li><i>Šifra dokaza</i> koja označava tip dokaza na kojima se zasniva napomena;</li> <li>Datum i kreator napomene</li></ul> <p>Dodatne informacije, ovisno o rerminu GO i korištenim dokazima, kao i posebne informacije, poput uvjeta pod kojima se funkcija poštuje, također se mogu uključiti u napomenu GO. </p><p>Kodiranje dokaza dolazi iz <a href="/w/index.php?title=Kontrolirani_rje%C4%8Dnik&action=edit&redlink=1" class="new" title="Kontrolirani rječnik (stranica ne postoji)">kontroliranog rječnika</a> kodova Ontologije koda dokaza, koji pokriva i ručne i automatizirane metode označavanje.<sup id="cite_ref-urlECO:_Evidence_Code_Ontology_10-0" class="reference"><a href="#cite_note-urlECO:_Evidence_Code_Ontology-10"><span class="cite-bracket">[</span>10<span class="cite-bracket">]</span></a></sup> Naperimjer, <i>Traceable Author Statement</i> (TAS) znači da je kustos (kurator) pročitao objavljeni naučni rad i da metapodaci za tu napomenu navode taj rad; <i>Izvučeno iz sličnosti sekvence </i> (ISS) znači da je ljudski kustos pregledao rezultate pretraživanja sličnosti sekvenci i potvrdio da je biološki značajan. Oznake iz automatiziranih procesa (naprimjer, preslikavanje bilješki kreiranih korištenjem drugog rječnika označavanje) dobivaju kod <i> Izvučeno iz elektronske bilješke </i> (IEA). U 2010. godini preko 98% svih GO oznaka izvedeno je računarski, ne od strane kustosa, ali od 2. jula 2019. računarski je izvedeno samo oko 30% svih GO oznaka.<sup id="cite_ref-urThe_what,_where,_how_and_why_of_gene_ontology—a_primer_for_bioinformaticians_—_Brief_Bioinform_11-0" class="reference"><a href="#cite_note-urThe_what,_where,_how_and_why_of_gene_ontology—a_primer_for_bioinformaticians_—_Brief_Bioinform-11"><span class="cite-bracket">[</span>11<span class="cite-bracket">]</span></a></sup><sup id="cite_ref-gocons_12-0" class="reference"><a href="#cite_note-gocons-12"><span class="cite-bracket">[</span>12<span class="cite-bracket">]</span></a></sup> </p><p>Budući da ove oznake ne provjerava čovjek, GO konzorcij smatra da su marginalno manje pouzdane i da su obično na višem nivou, manje detaljni pojmovi. Cjeloviti skupovi podataka o označavanjima mogu se preuzeti s web stranice GO. Da bi podržao razvoj anotacija, GO konzorcij pruža radionice i mentore novim grupama kustosa i programera. </p><p>Mnogi algoritmi <a href="/wiki/Ma%C5%A1insko_u%C4%8Denje" title="Mašinsko učenje">mašinskog učenja</a> dizajnirani su i implementirani za predviđanje napomena o genetičkoj ontologiji.<sup id="cite_ref-13" class="reference"><a href="#cite_note-13"><span class="cite-bracket">[</span>13<span class="cite-bracket">]</span></a></sup><sup id="cite_ref-CozzettoJones2017_14-0" class="reference"><a href="#cite_note-CozzettoJones2017-14"><span class="cite-bracket">[</span>14<span class="cite-bracket">]</span></a></sup> </p> <div class="mw-heading mw-heading3"><h3 id="Primjeri_označavanja"><span id="Primjeri_ozna.C4.8Davanja"></span>Primjeri označavanja</h3><span class="mw-editsection"><span class="mw-editsection-bracket">[</span><a href="/w/index.php?title=Ontologija_gena&veaction=edit&section=4" title="Uredi odlomak "Primjeri označavanja"" class="mw-editsection-visualeditor"><span>uredi</span></a><span class="mw-editsection-divider"> | </span><a href="/w/index.php?title=Ontologija_gena&action=edit&section=4" title="Edit section's source code: Primjeri označavanja"><span>uredi izvor</span></a><span class="mw-editsection-bracket">]</span></span></div> <dl><dd>Genski proizvod : Aktin, srčani mišić alfa 1, <a rel="nofollow" class="external text" href="http://amigo.geneontology.org/amigo/gene_product/UniProtKB:P68032">UniProtKB:P68032</a></dd> <dd>GO termin: <a rel="nofollow" class="external text" href="http://amigo.geneontology.org/amigo/term/GO:0060047">heart contraction ; GO:0060047</a> (biološki proces)</dd> <dd>Kod dokaza: Inferencija mutantnog fenotipa (IMP)</dd> <dd>Referenca: <a rel="nofollow" class="external text" href="//www.ncbi.nlm.nih.gov/pubmed/17611253">PubMed</a></dd> <dd>Označio: UniProtKB, 6. jun, 2008</dd></dl> <p>Podatak o izvoru:<sup id="cite_ref-15" class="reference"><a href="#cite_note-15"><span class="cite-bracket">[</span>15<span class="cite-bracket">]</span></a></sup> </p> <div class="mw-heading mw-heading2"><h2 id="Alati">Alati</h2><span class="mw-editsection"><span class="mw-editsection-bracket">[</span><a href="/w/index.php?title=Ontologija_gena&veaction=edit&section=5" title="Uredi odlomak "Alati"" class="mw-editsection-visualeditor"><span>uredi</span></a><span class="mw-editsection-divider"> | </span><a href="/w/index.php?title=Ontologija_gena&action=edit&section=5" title="Edit section's source code: Alati"><span>uredi izvor</span></a><span class="mw-editsection-bracket">]</span></span></div> <p>Dostupan je veliki broj alata,<sup id="cite_ref-pmid18480123_16-0" class="reference"><a href="#cite_note-pmid18480123-16"><span class="cite-bracket">[</span>16<span class="cite-bracket">]</span></a></sup> kako na mreži, tako i za preuzimanja koja koriste podatke koje pruža projekt GO. Velika većina njih dolazi od trećih strana; konzorcij GO razvija i podržava dva alata, <b>AmiGO</b> i <b>OBO-Edit</b>. </p><p>AmiGO<sup id="cite_ref-AmiGO_9-1" class="reference"><a href="#cite_note-AmiGO-9"><span class="cite-bracket">[</span>9<span class="cite-bracket">]</span></a></sup><sup id="cite_ref-17" class="reference"><a href="#cite_note-17"><span class="cite-bracket">[</span>17<span class="cite-bracket">]</span></a></sup> je internetska aplikacija koja omogućava korisnicima da pretražuju, pregledavaju i vizualiziraju ontologije i podatke o oznakama genskog proizvoda. Također ima alat <a href="/wiki/BLAST" title="BLAST">BLAST</a>-a,<sup id="cite_ref-18" class="reference"><a href="#cite_note-18"><span class="cite-bracket">[</span>18<span class="cite-bracket">]</span></a></sup> tools allowing analysis of larger data sets,<sup id="cite_ref-19" class="reference"><a href="#cite_note-19"><span class="cite-bracket">[</span>19<span class="cite-bracket">]</span></a></sup><sup id="cite_ref-20" class="reference"><a href="#cite_note-20"><span class="cite-bracket">[</span>20<span class="cite-bracket">]</span></a></sup> and an interface to query the GO database directly.<sup id="cite_ref-21" class="reference"><a href="#cite_note-21"><span class="cite-bracket">[</span>21<span class="cite-bracket">]</span></a></sup> </p><p>AmiGO može se koristiti na mreži na web stranici GO za pristup podacima koje pruža GO konzorcij ili se može preuzeti i instalirati za lokalnu upotrebu, u bilo kojoj bazi podataka koja koristi shemu baze podataka GO (npr.<sup id="cite_ref-22" class="reference"><a href="#cite_note-22"><span class="cite-bracket">[</span>22<span class="cite-bracket">]</span></a></sup>). Besplatni <a href="/wiki/Softver_otvorenog_koda" title="Softver otvorenog koda">softver otvorenog koda</a> dostupan je kao dio distribucije go-dev softvera.<sup id="cite_ref-sfdl_23-0" class="reference"><a href="#cite_note-sfdl-23"><span class="cite-bracket">[</span>23<span class="cite-bracket">]</span></a></sup> </p><p>OBO-Edit<sup id="cite_ref-24" class="reference"><a href="#cite_note-24"><span class="cite-bracket">[</span>24<span class="cite-bracket">]</span></a></sup> je uređivač ontologije otvorenog koda, neovisan o platformi, koji je razvio i održava Konzorcij za genetičku ontologiju. Implementiran je u [[Java (programski jezik] | Java]] i koristi pristup <a href="/wiki/Teorija_grafova" title="Teorija grafova">orijentiran na grafove</a> za prikaz i uređivanje ontologija. OBO-Edit uključuje sveobuhvatni interfejs (sučelje) za pretraživanje i filtriranje, s opcijom prikazivanja podskupina pojmova, kako bi ih vizualno razlikovali; korisnički interfejs se takođe može prilagoditi prema korisničkim željama. OBO-Edit također ima <a href="/w/index.php?title=Semanti%C4%8Dki_rezoner&action=edit&redlink=1" class="new" title="Semantički rezoner (stranica ne postoji)">rezoner</a> koji može zaključiti veze koje nisu izričito navedene, na osnovu postojećih odnosa i njihovih svojstava. Iako je razvijen za biomedicinske ontologije, OBO-Edit može se koristiti za pregled, pretraživanje i uređivanje bilo koje ontologije. Slobodno je dostupan za preuzimanje.<sup id="cite_ref-sfdl_23-1" class="reference"><a href="#cite_note-sfdl-23"><span class="cite-bracket">[</span>23<span class="cite-bracket">]</span></a></sup> </p> <div class="mw-heading mw-heading2"><h2 id="Konzorcij">Konzorcij</h2><span class="mw-editsection"><span class="mw-editsection-bracket">[</span><a href="/w/index.php?title=Ontologija_gena&veaction=edit&section=6" title="Uredi odlomak "Konzorcij"" class="mw-editsection-visualeditor"><span>uredi</span></a><span class="mw-editsection-divider"> | </span><a href="/w/index.php?title=Ontologija_gena&action=edit&section=6" title="Edit section's source code: Konzorcij"><span>uredi izvor</span></a><span class="mw-editsection-bracket">]</span></span></div> <p>Konzorcij za gensku ontologiju je skup <a href="/w/index.php?title=Biolo%C5%A1ka_baza_podataka&action=edit&redlink=1" class="new" title="Biološka baza podataka (stranica ne postoji)">bioloških baza podataka</a> i istraživačkih grupa koje su aktivno uključene u projekt genske ontologije.<sup id="cite_ref-gocons_12-1" class="reference"><a href="#cite_note-gocons-12"><span class="cite-bracket">[</span>12<span class="cite-bracket">]</span></a></sup> To uključuje niz baza podataka o <a href="/wiki/Modelni_organizam" title="Modelni organizam">model organizama</a> i <a href="/w/index.php?title=Biolo%C5%A1ka_baza_podataka&action=edit&redlink=1" class="new" title="Biološka baza podataka (stranica ne postoji)">baze podataka o više vrsta</a>, grupe za razvoj softvera i namjensku redakciju. </p> <div class="mw-heading mw-heading2"><h2 id="Historija">Historija</h2><span class="mw-editsection"><span class="mw-editsection-bracket">[</span><a href="/w/index.php?title=Ontologija_gena&veaction=edit&section=7" title="Uredi odlomak "Historija"" class="mw-editsection-visualeditor"><span>uredi</span></a><span class="mw-editsection-divider"> | </span><a href="/w/index.php?title=Ontologija_gena&action=edit&section=7" title="Edit section's source code: Historija"><span>uredi izvor</span></a><span class="mw-editsection-bracket">]</span></span></div> <p>Ontologija gena je prvobitno konstruirana 1998., u organizaciji Konzorcija istraživača koji su proučavali <a href="/wiki/Genom" title="Genom">genome</a> tri <a href="/wiki/Modelni_organizam" title="Modelni organizam">modelnih organizma</a>: <i><a href="/wiki/Drosophila_melanogaster" class="mw-redirect" title="Drosophila melanogaster">Drosophila melanogaster</a> </i> (voćna mušica), <i><a href="/wiki/Mus_musculus" class="mw-redirect" title="Mus musculus">Mus musculus</a></i> (miš) i <i><a href="/wiki/Saccharomyces_cerevisiae" class="mw-redirect" title="Saccharomyces cerevisiae">Saccharomyces cerevisiae</a></i> (pivski ili pekarski kvasac).<sup id="cite_ref-pmid10802651_25-0" class="reference"><a href="#cite_note-pmid10802651-25"><span class="cite-bracket">[</span>25<span class="cite-bracket">]</span></a></sup> Mnoge druge <a href="/w/index.php?title=Baza_podataka_o_model_organizmima&action=edit&redlink=1" class="new" title="Baza podataka o model organizmima (stranica ne postoji)">baze podataka o model-organizmima</a> pridružile su se Konzorciju ontologoje gena, doprinoseći ne samo anotacijskim podacima, već i razvoju ontologija i alata za pregled i primjenu podataka. Mnoge velike baze podataka o <a href="/wiki/Biljka" class="mw-redirect" title="Biljka">biljkama</a>, <a href="/wiki/%C5%BDivotinja" class="mw-redirect" title="Životinja">životinjama</a> i <a href="/wiki/Mikroorganizmi" class="mw-redirect" title="Mikroorganizmi">mikroorganizmima</a> daju svoj doprinos ovom projektu.<sup id="cite_ref-urlGene_Ontology_Resource_7-1" class="reference"><a href="#cite_note-urlGene_Ontology_Resource-7"><span class="cite-bracket">[</span>7<span class="cite-bracket">]</span></a></sup> As of July 2019, the GO contains 44,945 terms; there are 6,408,283 annotations to 4,467 different biological organisms.<sup id="cite_ref-urlGene_Ontology_Resource_7-2" class="reference"><a href="#cite_note-urlGene_Ontology_Resource-7"><span class="cite-bracket">[</span>7<span class="cite-bracket">]</span></a></sup> Postoji značajna literatura o razvoju i upotrebi GO-a, a ona je postala standardni alat u <a href="/wiki/Bioinformatika" title="Bioinformatika">bioinformatičkom</a> arsenalu. Njihovi ciljevi imaju tri aspekta: izgradnja ontologije gena, dodjeljivanje ontologije genima/genskim proizvodima i razvoj softvera i baza podataka za prva dva objekta. </p><p>Počinje se pojavljivati i nekoliko analiza genske ontologije, koristeći formalna svojstva <a href="/wiki/Razred_(biologija)" title="Razred (biologija)">razreda</a> (metasvojstva), koja su nezavisna od domena. Naprimjer, vidi ontološka analiza bioloških ontologija.<sup id="cite_ref-26" class="reference"><a href="#cite_note-26"><span class="cite-bracket">[</span>26<span class="cite-bracket">]</span></a></sup> </p> <div class="mw-heading mw-heading2"><h2 id="Također_pogledajte"><span id="Tako.C4.91er_pogledajte"></span>Također pogledajte</h2><span class="mw-editsection"><span class="mw-editsection-bracket">[</span><a href="/w/index.php?title=Ontologija_gena&veaction=edit&section=8" title="Uredi odlomak "Također pogledajte"" class="mw-editsection-visualeditor"><span>uredi</span></a><span class="mw-editsection-divider"> | </span><a href="/w/index.php?title=Ontologija_gena&action=edit&section=8" title="Edit section's source code: Također pogledajte"><span>uredi izvor</span></a><span class="mw-editsection-bracket">]</span></span></div> <ul><li><a href="/wiki/BLAST" title="BLAST">BLAST</a></li> <li><a href="/w/index.php?title=Blast2GO&action=edit&redlink=1" class="new" title="Blast2GO (stranica ne postoji)">Blast2GO</a><sup id="cite_ref-27" class="reference"><a href="#cite_note-27"><span class="cite-bracket">[</span>27<span class="cite-bracket">]</span></a></sup></li> <li><a href="/w/index.php?title=Uporedna_toksikogenomska_baza_podataka&action=edit&redlink=1" class="new" title="Uporedna toksikogenomska baza podataka (stranica ne postoji)">Uporedna toksikogenomska baza podataka</a></li> <li><a href="/w/index.php?title=DAVID_bioinformatika&action=edit&redlink=1" class="new" title="DAVID bioinformatika (stranica ne postoji)">DAVID bioinformatika</a></li> <li><a href="/w/index.php?title=Interferom&action=edit&redlink=1" class="new" title="Interferom (stranica ne postoji)">Interferom</a></li> <li><a href="/w/index.php?title=Nacionalni_centar_za_biomedicinsku_ontologiju&action=edit&redlink=1" class="new" title="Nacionalni centar za biomedicinsku ontologiju (stranica ne postoji)">Nacionalni centar za biomedicinsku ontologiju</a></li></ul> <div class="mw-heading mw-heading2"><h2 id="Reference">Reference</h2><span class="mw-editsection"><span class="mw-editsection-bracket">[</span><a href="/w/index.php?title=Ontologija_gena&veaction=edit&section=9" title="Uredi odlomak "Reference"" class="mw-editsection-visualeditor"><span>uredi</span></a><span class="mw-editsection-divider"> | </span><a href="/w/index.php?title=Ontologija_gena&action=edit&section=9" title="Edit section's source code: Reference"><span>uredi izvor</span></a><span class="mw-editsection-bracket">]</span></span></div> <style data-mw-deduplicate="TemplateStyles:r3312388">.mw-parser-output .reflist{font-size:90%;margin-bottom:0.5em;list-style-type:decimal}.mw-parser-output .reflist .references{font-size:100%;margin-bottom:0;list-style-type:inherit}.mw-parser-output .reflist-columns-2{column-width:30em}.mw-parser-output .reflist-columns-3{column-width:25em}.mw-parser-output .reflist-columns{margin-top:0.3em}.mw-parser-output .reflist-columns ol{margin-top:0}.mw-parser-output .reflist-columns li{page-break-inside:avoid;break-inside:avoid-column}.mw-parser-output .reflist-upper-alpha{list-style-type:upper-alpha}.mw-parser-output .reflist-upper-roman{list-style-type:upper-roman}.mw-parser-output .reflist-lower-alpha{list-style-type:lower-alpha}.mw-parser-output .reflist-lower-greek{list-style-type:lower-greek}.mw-parser-output .reflist-lower-roman{list-style-type:lower-roman}</style><div class="reflist reflist-columns references-column-width" style="column-width: 30em;"> <ol class="references"> <li id="cite_note-pmid17984083-1"><span class="mw-cite-backlink"><b><a href="#cite_ref-pmid17984083_1-0">^</a></b></span> <span class="reference-text"><style data-mw-deduplicate="TemplateStyles:r3303350">.mw-parser-output cite.citation{font-style:inherit}.mw-parser-output .citation q{quotes:"\"""\"""'""'"}.mw-parser-output .id-lock-free a,.mw-parser-output .citation .cs1-lock-free a{background:linear-gradient(transparent,transparent),url("//upload.wikimedia.org/wikipedia/commons/6/65/Lock-green.svg")right 0.1em center/9px no-repeat}.mw-parser-output .id-lock-limited a,.mw-parser-output .id-lock-registration a,.mw-parser-output .citation .cs1-lock-limited a,.mw-parser-output .citation .cs1-lock-registration a{background:linear-gradient(transparent,transparent),url("//upload.wikimedia.org/wikipedia/commons/d/d6/Lock-gray-alt-2.svg")right 0.1em center/9px no-repeat}.mw-parser-output .id-lock-subscription a,.mw-parser-output .citation .cs1-lock-subscription a{background:linear-gradient(transparent,transparent),url("//upload.wikimedia.org/wikipedia/commons/a/aa/Lock-red-alt-2.svg")right 0.1em center/9px no-repeat}.mw-parser-output .cs1-subscription,.mw-parser-output .cs1-registration{color:#555}.mw-parser-output .cs1-subscription span,.mw-parser-output .cs1-registration span{border-bottom:1px dotted;cursor:help}.mw-parser-output .cs1-ws-icon a{background:linear-gradient(transparent,transparent),url("//upload.wikimedia.org/wikipedia/commons/4/4c/Wikisource-logo.svg")right 0.1em center/12px no-repeat}.mw-parser-output code.cs1-code{color:inherit;background:inherit;border:none;padding:inherit}.mw-parser-output .cs1-hidden-error{display:none;font-size:100%}.mw-parser-output .cs1-visible-error{font-size:100%}.mw-parser-output .cs1-maint{display:none;color:#33aa33;margin-left:0.3em}.mw-parser-output .cs1-format{font-size:95%}.mw-parser-output .cs1-kern-left,.mw-parser-output .cs1-kern-wl-left{padding-left:0.2em}.mw-parser-output .cs1-kern-right,.mw-parser-output .cs1-kern-wl-right{padding-right:0.2em}.mw-parser-output .citation .mw-selflink{font-weight:inherit}</style><cite id="CITEREFThe_Gene_Ontology_Consortium2008" class="citation journal cs1">The Gene Ontology Consortium (januar 2008). <a rel="nofollow" class="external text" href="//www.ncbi.nlm.nih.gov/pmc/articles/PMC2238979">"The Gene Ontology project in 2008"</a>. <i>Nucleic Acids Research</i>. <b>36</b> (Database issue): D440–4. <a href="/wiki/Doi_(identifikator)" class="mw-redirect" title="Doi (identifikator)">doi</a>:<a rel="nofollow" class="external text" href="https://doi.org/10.1093%2Fnar%2Fgkm883">10.1093/nar/gkm883</a>. <a href="/wiki/PMC_(identifikator)" class="mw-redirect" title="PMC (identifikator)">PMC</a> <span class="cs1-lock-free" title="Slobodno dostupno"><a rel="nofollow" class="external text" href="//www.ncbi.nlm.nih.gov/pmc/articles/PMC2238979">2238979</a></span>. <a href="/wiki/PMID_(identifikator)" class="mw-redirect" title="PMID (identifikator)">PMID</a> <a rel="nofollow" class="external text" href="//pubmed.ncbi.nlm.nih.gov/17984083">17984083</a>.</cite><span title="ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.jtitle=Nucleic+Acids+Research&rft.atitle=The+Gene+Ontology+project+in+2008&rft.volume=36&rft.issue=Database+issue&rft.pages=D440-4&rft.date=2008-01&rft_id=%2F%2Fwww.ncbi.nlm.nih.gov%2Fpmc%2Farticles%2FPMC2238979%23id-name%3DPMC&rft_id=info%3Apmid%2F17984083&rft_id=info%3Adoi%2F10.1093%2Fnar%2Fgkm883&rft.au=The+Gene+Ontology+Consortium&rft_id=%2F%2Fwww.ncbi.nlm.nih.gov%2Fpmc%2Farticles%2FPMC2238979&rfr_id=info%3Asid%2Fbs.wikipedia.org%3AOntologija+gena" class="Z3988"></span></span> </li> <li id="cite_note-GO-2"><span class="mw-cite-backlink"><b><a href="#cite_ref-GO_2-0">^</a></b></span> <span class="reference-text"><link rel="mw-deduplicated-inline-style" href="mw-data:TemplateStyles:r3303350"><cite id="CITEREFDessimozŠkunca2017" class="citation book cs1">Dessimoz, Christophe; Škunca, Nives, ured. (2017). <i>The Gene Ontology Handbook</i>. Methods in Molecular Biology. <b>1446</b>. <a href="/wiki/Doi_(identifikator)" class="mw-redirect" title="Doi (identifikator)">doi</a>:<a rel="nofollow" class="external text" href="https://doi.org/10.1007%2F978-1-4939-3743-1">10.1007/978-1-4939-3743-1</a>. <a href="/wiki/ISBN_(identifikator)" class="mw-redirect" title="ISBN (identifikator)">ISBN</a> <a href="/wiki/Posebno:Knji%C5%BEni_izvori/9781493937431" title="Posebno:Knjižni izvori/9781493937431"><bdi>9781493937431</bdi></a>. <a href="/wiki/ISSN_(identifikator)" class="mw-redirect" title="ISSN (identifikator)">ISSN</a> <a rel="nofollow" class="external text" href="//www.worldcat.org/issn/1064-3745">1064-3745</a>. <a href="/wiki/S2CID_(identifikator)" class="mw-redirect" title="S2CID (identifikator)">S2CID</a> <a rel="nofollow" class="external text" href="https://api.semanticscholar.org/CorpusID:3708801">3708801</a>.</cite><span title="ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Abook&rft.genre=book&rft.btitle=The+Gene+Ontology+Handbook&rft.series=Methods+in+Molecular+Biology&rft.date=2017&rft_id=info%3Adoi%2F10.1007%2F978-1-4939-3743-1&rft_id=https%3A%2F%2Fapi.semanticscholar.org%2FCorpusID%3A3708801%23id-name%3DS2CID&rft.issn=1064-3745&rft.isbn=9781493937431&rfr_id=info%3Asid%2Fbs.wikipedia.org%3AOntologija+gena" class="Z3988"></span> <span style="position:relative; top: -2px;"><span typeof="mw:File"><a href="/wiki/Otvoren_pristup" title="publikacija otvorenog pristupa - besplatna za čitanje"><img alt="publikacija otvorenog pristupa - besplatna za čitanje" src="//upload.wikimedia.org/wikipedia/commons/thumb/7/77/Open_Access_logo_PLoS_transparent.svg/9px-Open_Access_logo_PLoS_transparent.svg.png" decoding="async" width="9" height="14" class="mw-file-element" srcset="//upload.wikimedia.org/wikipedia/commons/thumb/7/77/Open_Access_logo_PLoS_transparent.svg/14px-Open_Access_logo_PLoS_transparent.svg.png 1.5x, //upload.wikimedia.org/wikipedia/commons/thumb/7/77/Open_Access_logo_PLoS_transparent.svg/18px-Open_Access_logo_PLoS_transparent.svg.png 2x" data-file-width="640" data-file-height="1000" /></a></span></span></span> </li> <li id="cite_note-GaudetŠkunca2017-3"><span class="mw-cite-backlink"><b><a href="#cite_ref-GaudetŠkunca2017_3-0">^</a></b></span> <span class="reference-text"><link rel="mw-deduplicated-inline-style" href="mw-data:TemplateStyles:r3303350"><cite id="CITEREFGaudetŠkuncaHuDessimoz2017" class="citation book cs1">Gaudet, Pascale; Škunca, Nives; Hu, James C.; Dessimoz, Christophe (2017). "Primer on the Gene Ontology". <i>The Gene Ontology Handbook</i>. Methods in Molecular Biology. <b>1446</b>. str. 25–37. <a href="/wiki/Doi_(identifikator)" class="mw-redirect" title="Doi (identifikator)">doi</a>:<a rel="nofollow" class="external text" href="https://doi.org/10.1007%2F978-1-4939-3743-1_3">10.1007/978-1-4939-3743-1_3</a>. <a href="/wiki/ISBN_(identifikator)" class="mw-redirect" title="ISBN (identifikator)">ISBN</a> <a href="/wiki/Posebno:Knji%C5%BEni_izvori/978-1-4939-3741-7" title="Posebno:Knjižni izvori/978-1-4939-3741-7"><bdi>978-1-4939-3741-7</bdi></a>. <a href="/wiki/ISSN_(identifikator)" class="mw-redirect" title="ISSN (identifikator)">ISSN</a> <a rel="nofollow" class="external text" href="//www.worldcat.org/issn/1064-3745">1064-3745</a>. <a href="/wiki/PMC_(identifikator)" class="mw-redirect" title="PMC (identifikator)">PMC</a> <span class="cs1-lock-free" title="Slobodno dostupno"><a rel="nofollow" class="external text" href="//www.ncbi.nlm.nih.gov/pmc/articles/PMC6377150">6377150</a></span>. <a href="/wiki/PMID_(identifikator)" class="mw-redirect" title="PMID (identifikator)">PMID</a> <a rel="nofollow" class="external text" href="//pubmed.ncbi.nlm.nih.gov/27812933">27812933</a>.</cite><span title="ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Abook&rft.genre=bookitem&rft.atitle=Primer+on+the+Gene+Ontology&rft.btitle=The+Gene+Ontology+Handbook&rft.series=Methods+in+Molecular+Biology&rft.pages=25-37&rft.date=2017&rft_id=%2F%2Fwww.ncbi.nlm.nih.gov%2Fpmc%2Farticles%2FPMC6377150%23id-name%3DPMC&rft_id=info%3Adoi%2F10.1007%2F978-1-4939-3743-1_3&rft_id=info%3Apmid%2F27812933&rft.issn=1064-3745&rft.isbn=978-1-4939-3741-7&rft.aulast=Gaudet&rft.aufirst=Pascale&rft.au=%C5%A0kunca%2C+Nives&rft.au=Hu%2C+James+C.&rft.au=Dessimoz%2C+Christophe&rfr_id=info%3Asid%2Fbs.wikipedia.org%3AOntologija+gena" class="Z3988"></span></span> </li> <li id="cite_note-pmid17989687-4"><span class="mw-cite-backlink"><b><a href="#cite_ref-pmid17989687_4-0">^</a></b></span> <span class="reference-text"><link rel="mw-deduplicated-inline-style" href="mw-data:TemplateStyles:r3303350"><cite id="CITEREFSmithAshburnerRosseBard2007" class="citation journal cs1">Smith B, Ashburner M, Rosse C, Bard J, Bug W, Ceusters W, Goldberg LJ, Eilbeck K, Ireland A, Mungall CJ, Leontis N, Rocca-Serra P, Ruttenberg A, Sansone SA, Scheuermann RH, Shah N, Whetzel PL, Lewis S (novembar 2007). <a rel="nofollow" class="external text" href="//www.ncbi.nlm.nih.gov/pmc/articles/PMC2814061">"The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration"</a>. <i>Nature Biotechnology</i>. <b>25</b> (11): 1251–5. <a href="/wiki/Doi_(identifikator)" class="mw-redirect" title="Doi (identifikator)">doi</a>:<a rel="nofollow" class="external text" href="https://doi.org/10.1038%2Fnbt1346">10.1038/nbt1346</a>. <a href="/wiki/PMC_(identifikator)" class="mw-redirect" title="PMC (identifikator)">PMC</a> <span class="cs1-lock-free" title="Slobodno dostupno"><a rel="nofollow" class="external text" href="//www.ncbi.nlm.nih.gov/pmc/articles/PMC2814061">2814061</a></span>. <a href="/wiki/PMID_(identifikator)" class="mw-redirect" title="PMID (identifikator)">PMID</a> <a rel="nofollow" class="external text" href="//pubmed.ncbi.nlm.nih.gov/17989687">17989687</a>.</cite><span title="ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.jtitle=Nature+Biotechnology&rft.atitle=The+OBO+Foundry%3A+coordinated+evolution+of+ontologies+to+support+biomedical+data+integration&rft.volume=25&rft.issue=11&rft.pages=1251-5&rft.date=2007-11&rft_id=%2F%2Fwww.ncbi.nlm.nih.gov%2Fpmc%2Farticles%2FPMC2814061%23id-name%3DPMC&rft_id=info%3Apmid%2F17989687&rft_id=info%3Adoi%2F10.1038%2Fnbt1346&rft.aulast=Smith&rft.aufirst=B&rft.au=Ashburner%2C+M&rft.au=Rosse%2C+C&rft.au=Bard%2C+J&rft.au=Bug%2C+W&rft.au=Ceusters%2C+W&rft.au=Goldberg%2C+LJ&rft.au=Eilbeck%2C+K&rft.au=Ireland%2C+A&rft.au=Mungall%2C+CJ&rft.au=Leontis%2C+N&rft.au=Rocca-Serra%2C+P&rft.au=Ruttenberg%2C+A&rft.au=Sansone%2C+SA&rft.au=Scheuermann%2C+RH&rft.au=Shah%2C+N&rft.au=Whetzel%2C+PL&rft.au=Lewis%2C+S&rft_id=%2F%2Fwww.ncbi.nlm.nih.gov%2Fpmc%2Farticles%2FPMC2814061&rfr_id=info%3Asid%2Fbs.wikipedia.org%3AOntologija+gena" class="Z3988"></span></span> </li> <li id="cite_note-Lovering2017-5"><span class="mw-cite-backlink"><b><a href="#cite_ref-Lovering2017_5-0">^</a></b></span> <span class="reference-text"><link rel="mw-deduplicated-inline-style" href="mw-data:TemplateStyles:r3303350"><cite id="CITEREFLovering2017" class="citation book cs1">Lovering, Ruth C. (2017). "How Does the Scientific Community Contribute to Gene Ontology?". u Dessimoz, C; Skunca, N (ured.). <i>The Gene Ontology Handbook</i>. Methods in Molecular Biology (jezik: engleski). <b>1446</b>. Springer (New York). str. 85–93. <a href="/wiki/Doi_(identifikator)" class="mw-redirect" title="Doi (identifikator)">doi</a>:<a rel="nofollow" class="external text" href="https://doi.org/10.1007%2F978-1-4939-3743-1_7">10.1007/978-1-4939-3743-1_7</a>. <a href="/wiki/ISBN_(identifikator)" class="mw-redirect" title="ISBN (identifikator)">ISBN</a> <a href="/wiki/Posebno:Knji%C5%BEni_izvori/978-1-4939-3741-7" title="Posebno:Knjižni izvori/978-1-4939-3741-7"><bdi>978-1-4939-3741-7</bdi></a>. <a href="/wiki/ISSN_(identifikator)" class="mw-redirect" title="ISSN (identifikator)">ISSN</a> <a rel="nofollow" class="external text" href="//www.worldcat.org/issn/1064-3745">1064-3745</a>. <a href="/wiki/PMID_(identifikator)" class="mw-redirect" title="PMID (identifikator)">PMID</a> <a rel="nofollow" class="external text" href="//pubmed.ncbi.nlm.nih.gov/27812937">27812937</a>.</cite><span title="ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Abook&rft.genre=bookitem&rft.atitle=How+Does+the+Scientific+Community+Contribute+to+Gene+Ontology%3F&rft.btitle=The+Gene+Ontology+Handbook&rft.series=Methods+in+Molecular+Biology&rft.pages=85-93&rft.pub=Springer+%28New+York%29&rft.date=2017&rft_id=info%3Adoi%2F10.1007%2F978-1-4939-3743-1_7&rft.issn=1064-3745&rft_id=info%3Apmid%2F27812937&rft.isbn=978-1-4939-3741-7&rft.aulast=Lovering&rft.aufirst=Ruth+C.&rfr_id=info%3Asid%2Fbs.wikipedia.org%3AOntologija+gena" class="Z3988"></span></span> </li> <li id="cite_note-pmid17267433-6"><span class="mw-cite-backlink"><b><a href="#cite_ref-pmid17267433_6-0">^</a></b></span> <span class="reference-text"><link rel="mw-deduplicated-inline-style" href="mw-data:TemplateStyles:r3303350"><cite id="CITEREFDiehlLeeScheuermannJudith_Blake2007" class="citation journal cs1">Diehl AD, Lee JA, Scheuermann RH, Judith Blake (april 2007). <a rel="nofollow" class="external text" href="https://doi.org/10.1093%2Fbioinformatics%2Fbtm029">"Ontology development for biological systems: immunology"</a>. <i>Bioinformatics</i>. <b>23</b> (7): 913–5. <a href="/wiki/Doi_(identifikator)" class="mw-redirect" title="Doi (identifikator)">doi</a>:<span class="cs1-lock-free" title="Slobodno dostupno"><a rel="nofollow" class="external text" href="https://doi.org/10.1093%2Fbioinformatics%2Fbtm029">10.1093/bioinformatics/btm029</a></span>. <a href="/wiki/PMID_(identifikator)" class="mw-redirect" title="PMID (identifikator)">PMID</a> <a rel="nofollow" class="external text" href="//pubmed.ncbi.nlm.nih.gov/17267433">17267433</a>.</cite><span title="ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.jtitle=Bioinformatics&rft.atitle=Ontology+development+for+biological+systems%3A+immunology&rft.volume=23&rft.issue=7&rft.pages=913-5&rft.date=2007-04&rft_id=info%3Adoi%2F10.1093%2Fbioinformatics%2Fbtm029&rft_id=info%3Apmid%2F17267433&rft.aulast=Diehl&rft.aufirst=AD&rft.au=Lee%2C+JA&rft.au=Scheuermann%2C+RH&rft.au=Judith+Blake&rft_id=%2F%2Fdoi.org%2F10.1093%252Fbioinformatics%252Fbtm029&rfr_id=info%3Asid%2Fbs.wikipedia.org%3AOntologija+gena" class="Z3988"></span> <span class="cs1-visible-error error citation-comment">Greška u vankuverskom stilu: name u nazivu 4 (<a href="/w/index.php?title=Pomo%C4%87:CS1_gre%C5%A1ke&action=edit&redlink=1" class="new" title="Pomoć:CS1 greške (stranica ne postoji)">pomoć</a>)</span></span> </li> <li id="cite_note-urlGene_Ontology_Resource-7"><span class="mw-cite-backlink">^ <a href="#cite_ref-urlGene_Ontology_Resource_7-0"><sup><i><b>a</b></i></sup></a> <a href="#cite_ref-urlGene_Ontology_Resource_7-1"><sup><i><b>b</b></i></sup></a> <a href="#cite_ref-urlGene_Ontology_Resource_7-2"><sup><i><b>c</b></i></sup></a></span> <span class="reference-text"><link rel="mw-deduplicated-inline-style" href="mw-data:TemplateStyles:r3303350"><cite class="citation web cs1"><a rel="nofollow" class="external text" href="http://www.geneontology.org/">"The Gene Ontology Resource"</a>. Gene Ontology Consortium.</cite><span title="ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Abook&rft.genre=unknown&rft.btitle=The+Gene+Ontology+Resource&rft.pub=Gene+Ontology+Consortium&rft_id=http%3A%2F%2Fwww.geneontology.org%2F&rfr_id=info%3Asid%2Fbs.wikipedia.org%3AOntologija+gena" class="Z3988"></span></span> </li> <li id="cite_note-8"><span class="mw-cite-backlink"><b><a href="#cite_ref-8">^</a></b></span> <span class="reference-text"><link rel="mw-deduplicated-inline-style" href="mw-data:TemplateStyles:r3303350"><cite id="CITEREFSjcarbon,Gene_Ontology_Consortium_Wiki2013" class="citation web cs1">Sjcarbon,Gene Ontology Consortium Wiki (10. 7. 2013). <a rel="nofollow" class="external text" href="http://wiki.geneontology.org/index.php/AmiGO_2_Manual:_Term_Page">"AmiGO_2_Manual:term_Page"</a> <span class="cs1-format">(html)</span>.</cite><span title="ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Abook&rft.genre=unknown&rft.btitle=AmiGO_2_Manual%3Aterm_Page&rft.date=2013-07-10&rft.au=Sjcarbon%2CGene+Ontology+Consortium+Wiki&rft_id=http%3A%2F%2Fwiki.geneontology.org%2Findex.php%2FAmiGO_2_Manual%3A_Term_Page&rfr_id=info%3Asid%2Fbs.wikipedia.org%3AOntologija+gena" class="Z3988"></span></span> </li> <li id="cite_note-AmiGO-9"><span class="mw-cite-backlink">^ <a href="#cite_ref-AmiGO_9-0"><sup><i><b>a</b></i></sup></a> <a href="#cite_ref-AmiGO_9-1"><sup><i><b>b</b></i></sup></a></span> <span class="reference-text"><a rel="nofollow" class="external text" href="http://amigo.geneontology.org/amigo">AmiGO</a>--the current official web-based set of tools for searching and browsing the Gene Ontology database</span> </li> <li id="cite_note-urlECO:_Evidence_Code_Ontology-10"><span class="mw-cite-backlink"><b><a href="#cite_ref-urlECO:_Evidence_Code_Ontology_10-0">^</a></b></span> <span class="reference-text"><link rel="mw-deduplicated-inline-style" href="mw-data:TemplateStyles:r3303350"><cite class="citation web cs1"><a rel="nofollow" class="external text" href="http://www.evidenceontology.org/">"Evidence Code Ontology"</a>. 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Pristupljeno 13. 3. 2009</span>.</cite><span title="ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Abook&rft.genre=unknown&rft.btitle=AmiGO+BLAST+tool&rft_id=http%3A%2F%2Famigo.geneontology.org%2Fcgi-bin%2Famigo%2Fblast.cgi&rfr_id=info%3Asid%2Fbs.wikipedia.org%3AOntologija+gena" class="Z3988"></span></span> </li> <li id="cite_note-19"><span class="mw-cite-backlink"><b><a href="#cite_ref-19">^</a></b></span> <span class="reference-text"><a rel="nofollow" class="external text" href="http://amigo.geneontology.org/cgi-bin/amigo/term_enrichment">AmiGO Term Enrichment tool</a> <a rel="nofollow" class="external text" href="https://web.archive.org/web/20080407005338/http://amigo.geneontology.org/cgi-bin/amigo/term_enrichment">Arhivirano</a> 7. 4. 2008. na <a href="/wiki/Wayback_Machine" title="Wayback Machine">Wayback Machine</a>; finds significant shared GO terms in an annotation set</span> </li> <li id="cite_note-20"><span class="mw-cite-backlink"><b><a href="#cite_ref-20">^</a></b></span> <span class="reference-text"><a rel="nofollow" class="external text" href="http://amigo.geneontology.org/cgi-bin/amigo/slimmer">AmiGO Slimmer</a> <a rel="nofollow" class="external text" href="https://web.archive.org/web/20110929141146/http://amigo.geneontology.org/cgi-bin/amigo/slimmer">Arhivirano</a> 29. 9. 2011. na <a href="/wiki/Wayback_Machine" title="Wayback Machine">Wayback Machine</a>; maps granular annotations up to high-level terms</span> </li> <li id="cite_note-21"><span class="mw-cite-backlink"><b><a href="#cite_ref-21">^</a></b></span> <span class="reference-text"><a rel="nofollow" class="external text" href="http://berkeleybop.org/goose">GOOSE</a> <a rel="nofollow" class="external text" href="https://web.archive.org/web/20090301041914/http://berkeleybop.org/goose">Arhivirano</a> 1. 3. 2009. na <a href="/wiki/Wayback_Machine" title="Wayback Machine">Wayback Machine</a>, GO Online SQL Environment; allows direct SQL querying of the GO database</span> </li> <li id="cite_note-22"><span class="mw-cite-backlink"><b><a href="#cite_ref-22">^</a></b></span> <span class="reference-text"><link rel="mw-deduplicated-inline-style" href="mw-data:TemplateStyles:r3303350"><cite id="CITEREFThe_Plant_Ontology_Consortium2009" class="citation web cs1">The Plant Ontology Consortium (16. 3. 2009). <a rel="nofollow" class="external text" href="http://plantontology.org/amigo/go.cgi">"Plant Ontology Consortium"</a><span class="reference-accessdate">. Pristupljeno 16. 3. 2009</span>.</cite><span title="ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Abook&rft.genre=unknown&rft.btitle=Plant+Ontology+Consortium&rft.date=2009-03-16&rft.au=The+Plant+Ontology+Consortium&rft_id=http%3A%2F%2Fplantontology.org%2Famigo%2Fgo.cgi&rfr_id=info%3Asid%2Fbs.wikipedia.org%3AOntologija+gena" class="Z3988"></span></span> </li> <li id="cite_note-sfdl-23"><span class="mw-cite-backlink">^ <a href="#cite_ref-sfdl_23-0"><sup><i><b>a</b></i></sup></a> <a href="#cite_ref-sfdl_23-1"><sup><i><b>b</b></i></sup></a></span> <span class="reference-text"><link rel="mw-deduplicated-inline-style" href="mw-data:TemplateStyles:r3303350"><cite class="citation web cs1"><a rel="nofollow" class="external text" href="http://sourceforge.net/project/showfiles.php?group_id=36855">"Gene Ontology downloads at SourceForge"</a><span class="reference-accessdate">. Pristupljeno 16. 3. 2009</span>.</cite><span title="ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Abook&rft.genre=unknown&rft.btitle=Gene+Ontology+downloads+at+SourceForge&rft_id=http%3A%2F%2Fsourceforge.net%2Fproject%2Fshowfiles.php%3Fgroup_id%3D36855&rfr_id=info%3Asid%2Fbs.wikipedia.org%3AOntologija+gena" class="Z3988"></span></span> </li> <li id="cite_note-24"><span class="mw-cite-backlink"><b><a href="#cite_ref-24">^</a></b></span> <span class="reference-text"><link rel="mw-deduplicated-inline-style" href="mw-data:TemplateStyles:r3303350"><cite id="CITEREFDay-RichterHarrisHaendelLewis2007" class="citation journal cs1">Day-Richter J, Harris MA, Haendel M, Lewis S (august 2007). <a rel="nofollow" class="external text" href="https://doi.org/10.1093%2Fbioinformatics%2Fbtm112">"OBO-Edit--an ontology editor for biologists"</a>. <i>Bioinformatics</i>. <b>23</b> (16): 2198–200. <a href="/wiki/Doi_(identifikator)" class="mw-redirect" title="Doi (identifikator)">doi</a>:<span class="cs1-lock-free" title="Slobodno dostupno"><a rel="nofollow" class="external text" href="https://doi.org/10.1093%2Fbioinformatics%2Fbtm112">10.1093/bioinformatics/btm112</a></span>. <a href="/wiki/PMID_(identifikator)" class="mw-redirect" title="PMID (identifikator)">PMID</a> <a rel="nofollow" class="external text" href="//pubmed.ncbi.nlm.nih.gov/17545183">17545183</a>.</cite><span title="ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.jtitle=Bioinformatics&rft.atitle=OBO-Edit--an+ontology+editor+for+biologists&rft.volume=23&rft.issue=16&rft.pages=2198-200&rft.date=2007-08&rft_id=info%3Adoi%2F10.1093%2Fbioinformatics%2Fbtm112&rft_id=info%3Apmid%2F17545183&rft.aulast=Day-Richter&rft.aufirst=J&rft.au=Harris%2C+MA&rft.au=Haendel%2C+M&rft.au=Lewis%2C+S&rft_id=%2F%2Fdoi.org%2F10.1093%252Fbioinformatics%252Fbtm112&rfr_id=info%3Asid%2Fbs.wikipedia.org%3AOntologija+gena" class="Z3988"></span></span> </li> <li id="cite_note-pmid10802651-25"><span class="mw-cite-backlink"><b><a href="#cite_ref-pmid10802651_25-0">^</a></b></span> <span class="reference-text"><link rel="mw-deduplicated-inline-style" href="mw-data:TemplateStyles:r3303350"><cite id="CITEREFAshburnerBallJudith_BlakeBotstein2000" class="citation journal cs1">Ashburner M, Ball CA, Judith Blake, Botstein DB, Butler H, Cherry JM, Davis AP, Dolinski K, Dwight SS, Eppig JT, Harris MA, Hill DP, Issel-Tarver L, Kasarskis A, Lewis S, Matese JC, Richardson JE, Ringwald M, Rubin GM, Sherlock G (maj 2000). <a rel="nofollow" class="external text" href="//www.ncbi.nlm.nih.gov/pmc/articles/PMC3037419">"Gene ontology: tool for the unification of biology. The Gene Ontology Consortium"</a>. <i>Nature Genetics</i>. <b>25</b> (1): 25–9. <a href="/wiki/Doi_(identifikator)" class="mw-redirect" title="Doi (identifikator)">doi</a>:<a rel="nofollow" class="external text" href="https://doi.org/10.1038%2F75556">10.1038/75556</a>. <a href="/wiki/PMC_(identifikator)" class="mw-redirect" title="PMC (identifikator)">PMC</a> <span class="cs1-lock-free" title="Slobodno dostupno"><a rel="nofollow" class="external text" href="//www.ncbi.nlm.nih.gov/pmc/articles/PMC3037419">3037419</a></span>. <a href="/wiki/PMID_(identifikator)" class="mw-redirect" title="PMID (identifikator)">PMID</a> <a rel="nofollow" class="external text" href="//pubmed.ncbi.nlm.nih.gov/10802651">10802651</a>.</cite><span title="ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.jtitle=Nature+Genetics&rft.atitle=Gene+ontology%3A+tool+for+the+unification+of+biology.+The+Gene+Ontology+Consortium&rft.volume=25&rft.issue=1&rft.pages=25-9&rft.date=2000-05&rft_id=%2F%2Fwww.ncbi.nlm.nih.gov%2Fpmc%2Farticles%2FPMC3037419%23id-name%3DPMC&rft_id=info%3Apmid%2F10802651&rft_id=info%3Adoi%2F10.1038%2F75556&rft.aulast=Ashburner&rft.aufirst=M&rft.au=Ball%2C+CA&rft.au=Judith+Blake&rft.au=Botstein%2C+D+Blake&rft.au=Butler%2C+H&rft.au=Cherry%2C+JM&rft.au=Davis%2C+AP&rft.au=Dolinski%2C+K&rft.au=Dwight%2C+SS&rft.au=Eppig%2C+JT&rft.au=Harris%2C+MA&rft.au=Hill%2C+DP&rft.au=Issel-Tarver%2C+L&rft.au=Kasarskis%2C+A&rft.au=Lewis%2C+S&rft.au=Matese%2C+JC&rft.au=Richardson%2C+JE&rft.au=Ringwald%2C+M&rft.au=Rubin%2C+GM&rft.au=Sherlock%2C+G&rft_id=%2F%2Fwww.ncbi.nlm.nih.gov%2Fpmc%2Farticles%2FPMC3037419&rfr_id=info%3Asid%2Fbs.wikipedia.org%3AOntologija+gena" class="Z3988"></span> <span class="cs1-visible-error error citation-comment">Greška u vankuverskom stilu: name u nazivu 3 (<a href="/w/index.php?title=Pomo%C4%87:CS1_gre%C5%A1ke&action=edit&redlink=1" class="new" title="Pomoć:CS1 greške (stranica ne postoji)">pomoć</a>)</span></span> </li> <li id="cite_note-26"><span class="mw-cite-backlink"><b><a href="#cite_ref-26">^</a></b></span> <span class="reference-text"><link rel="mw-deduplicated-inline-style" href="mw-data:TemplateStyles:r3303350"><cite id="CITEREFDeb,_B.2012" class="citation journal cs1">Deb, B. (2012). <a rel="nofollow" class="external text" href="//www.ncbi.nlm.nih.gov/pmc/articles/PMC3509948">"An ontological analysis of some biological ontologies"</a>. <i>Frontiers in Genetics</i>. <b>3</b>: 269. <a href="/wiki/Doi_(identifikator)" class="mw-redirect" title="Doi (identifikator)">doi</a>:<a rel="nofollow" class="external text" href="https://doi.org/10.3389%2Ffgene.2012.00269">10.3389/fgene.2012.00269</a>. <a href="/wiki/PMC_(identifikator)" class="mw-redirect" title="PMC (identifikator)">PMC</a> <span class="cs1-lock-free" title="Slobodno dostupno"><a rel="nofollow" class="external text" href="//www.ncbi.nlm.nih.gov/pmc/articles/PMC3509948">3509948</a></span>. <a href="/wiki/PMID_(identifikator)" class="mw-redirect" title="PMID (identifikator)">PMID</a> <a rel="nofollow" class="external text" href="//pubmed.ncbi.nlm.nih.gov/23226158">23226158</a>.</cite><span title="ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.jtitle=Frontiers+in+Genetics&rft.atitle=An+ontological+analysis+of+some+biological+ontologies&rft.volume=3&rft.pages=269&rft.date=2012&rft_id=%2F%2Fwww.ncbi.nlm.nih.gov%2Fpmc%2Farticles%2FPMC3509948%23id-name%3DPMC&rft_id=info%3Apmid%2F23226158&rft_id=info%3Adoi%2F10.3389%2Ffgene.2012.00269&rft.au=Deb%2C+B.&rft_id=%2F%2Fwww.ncbi.nlm.nih.gov%2Fpmc%2Farticles%2FPMC3509948&rfr_id=info%3Asid%2Fbs.wikipedia.org%3AOntologija+gena" class="Z3988"></span></span> </li> <li id="cite_note-27"><span class="mw-cite-backlink"><b><a href="#cite_ref-27">^</a></b></span> <span class="reference-text"><link rel="mw-deduplicated-inline-style" href="mw-data:TemplateStyles:r3303350"><cite id="CITEREFGötzGarcía-GómezTerolWilliams2008" class="citation journal cs1">Götz S, García-Gómez JM, Terol J, Williams TD, Nagaraj SH, Nueda MJ, Robles M, Talón M, Dopazo J, Conesa A (juni 2008). <a rel="nofollow" class="external text" href="//www.ncbi.nlm.nih.gov/pmc/articles/PMC2425479">"High-throughput functional annotation and data mining with the Blast2GO suite"</a>. <i>Nucleic Acids Research</i>. <b>36</b> (10): 3420–35. <a href="/wiki/Doi_(identifikator)" class="mw-redirect" title="Doi (identifikator)">doi</a>:<a rel="nofollow" class="external text" href="https://doi.org/10.1093%2Fnar%2Fgkn176">10.1093/nar/gkn176</a>. <a href="/wiki/PMC_(identifikator)" class="mw-redirect" title="PMC (identifikator)">PMC</a> <span class="cs1-lock-free" title="Slobodno dostupno"><a rel="nofollow" class="external text" href="//www.ncbi.nlm.nih.gov/pmc/articles/PMC2425479">2425479</a></span>. <a href="/wiki/PMID_(identifikator)" class="mw-redirect" title="PMID (identifikator)">PMID</a> <a rel="nofollow" class="external text" href="//pubmed.ncbi.nlm.nih.gov/18445632">18445632</a>.</cite><span title="ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.jtitle=Nucleic+Acids+Research&rft.atitle=High-throughput+functional+annotation+and+data+mining+with+the+Blast2GO+suite&rft.volume=36&rft.issue=10&rft.pages=3420-35&rft.date=2008-06&rft_id=%2F%2Fwww.ncbi.nlm.nih.gov%2Fpmc%2Farticles%2FPMC2425479%23id-name%3DPMC&rft_id=info%3Apmid%2F18445632&rft_id=info%3Adoi%2F10.1093%2Fnar%2Fgkn176&rft.aulast=G%C3%B6tz&rft.aufirst=S&rft.au=Garc%C3%ADa-G%C3%B3mez%2C+JM&rft.au=Terol%2C+J&rft.au=Williams%2C+TD&rft.au=Nagaraj%2C+SH&rft.au=Nueda%2C+MJ&rft.au=Robles%2C+M&rft.au=Tal%C3%B3n%2C+M&rft.au=Dopazo%2C+J&rft.au=Conesa%2C+A&rft_id=%2F%2Fwww.ncbi.nlm.nih.gov%2Fpmc%2Farticles%2FPMC2425479&rfr_id=info%3Asid%2Fbs.wikipedia.org%3AOntologija+gena" class="Z3988"></span></span> </li> </ol></div> <div class="mw-heading mw-heading2"><h2 id="Vanjski_linkovi">Vanjski linkovi</h2><span class="mw-editsection"><span class="mw-editsection-bracket">[</span><a href="/w/index.php?title=Ontologija_gena&veaction=edit&section=10" title="Uredi odlomak "Vanjski linkovi"" class="mw-editsection-visualeditor"><span>uredi</span></a><span class="mw-editsection-divider"> | </span><a href="/w/index.php?title=Ontologija_gena&action=edit&section=10" title="Edit section's source code: Vanjski linkovi"><span>uredi izvor</span></a><span class="mw-editsection-bracket">]</span></span></div> <style data-mw-deduplicate="TemplateStyles:r3627399">.mw-parser-output .side-box{margin:4px 0;box-sizing:border-box;border:1px solid #aaa;font-size:88%;line-height:1.25em;background-color:#f9f9f9;display:flow-root}.mw-parser-output .side-box-abovebelow,.mw-parser-output .side-box-text{padding:0.25em 0.9em}.mw-parser-output .side-box-image{padding:2px 0 2px 0.9em;text-align:center}.mw-parser-output .side-box-imageright{padding:2px 0.9em 2px 0;text-align:center}@media(min-width:500px){.mw-parser-output .side-box-flex{display:flex;align-items:center}.mw-parser-output .side-box-text{flex:1;min-width:0}}@media(min-width:720px){.mw-parser-output .side-box{width:238px}.mw-parser-output .side-box-right{clear:right;float:right;margin-left:1em}.mw-parser-output .side-box-left{margin-right:1em}}</style><div class="side-box side-box-right plainlinks sistersitebox"><style data-mw-deduplicate="TemplateStyles:r3486241">.mw-parser-output .plainlist ol,.mw-parser-output .plainlist ul{line-height:inherit;list-style:none;margin:0;padding:0}.mw-parser-output .plainlist ol li,.mw-parser-output .plainlist ul li{margin-bottom:0}</style> <div class="side-box-flex"> <div class="side-box-image"><span typeof="mw:File"><span><img alt="" src="//upload.wikimedia.org/wikipedia/commons/thumb/f/ff/Wikidata-logo.svg/40px-Wikidata-logo.svg.png" decoding="async" width="40" height="22" class="mw-file-element" srcset="//upload.wikimedia.org/wikipedia/commons/thumb/f/ff/Wikidata-logo.svg/60px-Wikidata-logo.svg.png 1.5x, //upload.wikimedia.org/wikipedia/commons/thumb/f/ff/Wikidata-logo.svg/80px-Wikidata-logo.svg.png 2x" data-file-width="1050" data-file-height="590" /></span></span></div> <div class="side-box-text plainlist"><a href="/wiki/Wikidata" class="mw-redirect" title="Wikidata">Wikidata</a> posjeduje svojstvo: <i><b><a href="https://www.wikidata.org/wiki/Property:P686" class="extiw" title="d:Property:P686">Gene Ontology ID <small>(P686)</small></a></b></i> (pogledajte <a href="https://www.wikidata.org/wiki/Property_talk:P686" class="extiw" title="d:Property talk:P686">stranicu za razgovor</a>; <span class="plainlinks"><a class="external text" href="https://query.wikidata.org/embed.html#SELECT%20%3Fitem%20%3FitemLabel%20%3Fvalue%20%3FvalueLabel%0A%7B%0A%09%3Fitem%20wdt%3AP686%20%3Fvalue%20.%0A%09SERVICE%20wikibase%3Alabel%20%7B%20bd%3AserviceParam%20wikibase%3Alanguage%20%22en%22%20%20%7D%20%20%20%20%0A%7D%0ALIMIT%201000">korištenja</a></span>)</div></div> </div> <ul><li><a rel="nofollow" class="external text" href="http://amigo.geneontology.org/amigo">AmiGO</a> - the current official web-based set of tools for searching and browsing the Gene Ontology database</li> <li><a rel="nofollow" class="external text" href="http://www.geneontology.org/">Gene Ontology Consortium</a> - official site</li> <li><a rel="nofollow" class="external text" href="http://plantregmap.cbi.pku.edu.cn/">PlantRegMap - GO annotation for 165 plant species and GO enrichment Analysis</a> <a rel="nofollow" class="external text" href="https://web.archive.org/web/20200513055428/http://plantregmap.cbi.pku.edu.cn/">Arhivirano</a> 13. 5. 2020. na <a href="/wiki/Wayback_Machine" title="Wayback Machine">Wayback Machine</a></li> <li><a rel="nofollow" class="external text" href="https://web.archive.org/web/20120828100848/http://tagc.univ-mrs.fr/SimCT/">SimCT</a> — web-based tool to display relationships between biological objects annotated to an ontology, in the form of a clustering tree.</li> <li><a rel="nofollow" class="external text" href="https://web.archive.org/web/20120419000901/http://estbioinfo.stat.ub.es/apli/serbgo/">SerbGO</a> — a GO tool to compare the capabilities of different programs to show their common features and their differences and to find which tools, if any, have some specific user-required capabilities for GO analysis.</li> <li><a rel="nofollow" class="external text" href="http://supfam.org/SUPERFAMILY/dcGO">Domain-centric Gene Ontology</a> <a rel="nofollow" class="external text" href="https://web.archive.org/web/20150102055146/http://supfam.org/SUPERFAMILY/dcGO/">Arhivirano</a> 2. 1. 2015. na <a href="/wiki/Wayback_Machine" title="Wayback Machine">Wayback Machine</a> — database of domain-centric ontologies on functions, phenotypes, diseases and more.</li></ul> <p><br /> </p> <div role="navigation" class="navbox" aria-labelledby="Bioinformatika" style="padding:3px"><table class="nowraplinks mw-collapsible autocollapse navbox-inner" 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.navbar{display:block;font-size:100%}.mw-parser-output .navbox-title .navbar{float:left;text-align:left;margin-right:0.5em}</style><div class="navbar plainlinks hlist navbar-mini"><ul><li class="nv-pogledaj"><a href="/wiki/%C5%A0ablon:Bioinformatika" title="Šablon:Bioinformatika"><abbr title="Pogledaj šablon" style=";;background:none transparent;border:none;box-shadow:none;padding:0;">p</abbr></a></li><li class="nv-razgovor"><a href="/w/index.php?title=Razgovor_o_%C5%A1ablonu:Bioinformatika&action=edit&redlink=1" class="new" title="Razgovor o šablonu:Bioinformatika (stranica ne postoji)"><abbr title="Razgovor o šablonu" style=";;background:none transparent;border:none;box-shadow:none;padding:0;">r</abbr></a></li><li class="nv-uredi"><a class="external text" href="https://bs.wikipedia.org/w/index.php?title=%C5%A0ablon:Bioinformatika&action=edit"><abbr title="Uredi šablon" style=";;background:none transparent;border:none;box-shadow:none;padding:0;">u</abbr></a></li></ul></div><div id="Bioinformatika" style="font-size:114%;margin:0 4em"><a href="/wiki/Bioinformatika" title="Bioinformatika">Bioinformatika</a></div></th></tr><tr><th scope="row" class="navbox-group" style="width:1%"><a href="/wiki/Baze_podataka" class="mw-redirect" title="Baze podataka">Baze podataka</a></th><td class="navbox-list navbox-odd" style="text-align:left;border-left-width:2px;border-left-style:solid;width:100%;padding:0px"><div style="padding:0em 0.25em"> <ul><li>Baze podataka sekvenci: <a href="/wiki/GenBank" title="GenBank">GenBank</a>, <a href="/w/index.php?title=Evropska_arhiva_nukleotida&action=edit&redlink=1" class="new" title="Evropska arhiva nukleotida (stranica ne postoji)">Evropska arhiva nukleotida</a> i <a href="/w/index.php?title=Japanska_DNK_baza_podataka&action=edit&redlink=1" class="new" title="Japanska DNK baza podataka (stranica ne postoji)">Japanska DNK baza podataka</a></li> <li>Sekundarne baze podataka: <a href="/wiki/UniProt" title="UniProt">UniProt</a>, baza podataka proteinskih sekvenci grupisanih zajedno <a href="/wiki/UniProt#UniProtKB.2FSwiss-Prot" title="UniProt">Swiss-Prot</a>, <a href="/wiki/UniProt#UniProtKB.2FTrEMBL" title="UniProt">TrEMBL</a> i <a href="/w/index.php?title=Izvor_informacija_o_proteinima&action=edit&redlink=1" class="new" title="Izvor informacija o proteinima (stranica ne postoji)">Izvor informacija o proteinima</a></li> <li>Ostale baze podataka: <a href="/wiki/Protein_Data_Bank" class="mw-redirect" title="Protein Data Bank">Protein Data Bank</a>, <a href="/wiki/Ensembl" class="mw-redirect" title="Ensembl">Ensembl</a> i <a href="/wiki/InterPro" title="InterPro">InterPro</a></li> <li>Specijalizirane genomske <a href="/wiki/Baze_podataka" class="mw-redirect" title="Baze podataka">baze podataka</a>: <a href="/w/index.php?title=BOLD&action=edit&redlink=1" class="new" title="BOLD (stranica ne postoji)">BOLD</a>, <a href="/w/index.php?title=Kva%C5%A1%C4%8Deva_genomska_baza_podataka&action=edit&redlink=1" class="new" title="Kvaščeva genomska baza podataka (stranica ne postoji)">Kvaščeva genomska baza podataka</a>, <a href="/w/index.php?title=FlyBaza&action=edit&redlink=1" class="new" title="FlyBaza (stranica ne postoji)">FlyBaza</a>, <a href="/w/index.php?title=VectorBase&action=edit&redlink=1" class="new" title="VectorBase (stranica ne postoji)">VectorBase</a>, <a href="/w/index.php?title=WormBase&action=edit&redlink=1" class="new" title="WormBase (stranica ne postoji)">WormBase</a>, <a href="/w/index.php?title=Baza_pacovskog_genoma&action=edit&redlink=1" class="new" title="Baza pacovskog genoma (stranica ne postoji)">Baza pacovskog genoma</a> , <a href="/w/index.php?title=PHI-baza&action=edit&redlink=1" class="new" title="PHI-baza (stranica ne postoji)">PHI-baza</a>, <a href="/w/index.php?title=Arabidopsisni_informacijski_resurs&action=edit&redlink=1" class="new" title="Arabidopsisni informacijski resurs (stranica ne postoji)">Arabidopsisni informacijski resurs</a> i <a href="/w/index.php?title=Informacijska_mre%C5%BEa_o_zebricama&action=edit&redlink=1" class="new" title="Informacijska mreža o zebricama (stranica ne postoji)">Informacijska mreža o zebricama</a></li></ul> </div></td></tr><tr><th scope="row" class="navbox-group" style="width:1%">Softver</th><td class="navbox-list navbox-even hlist" style="text-align:left;border-left-width:2px;border-left-style:solid;width:100%;padding:0px"><div style="padding:0em 0.25em"> <ul><li><a href="/wiki/BLAST" title="BLAST">BLAST</a></li> <li><a href="/w/index.php?title=Bowtie_(analiza_sekvenci)&action=edit&redlink=1" class="new" title="Bowtie (analiza sekvenci) (stranica ne postoji)">Bowtie</a></li> <li><a href="/w/index.php?title=Clustal&action=edit&redlink=1" class="new" title="Clustal (stranica ne postoji)">Clustal</a></li> <li><a href="/w/index.php?title=EMBOSS&action=edit&redlink=1" class="new" title="EMBOSS (stranica ne postoji)">EMBOSS</a></li> <li><a href="/w/index.php?title=HMMER&action=edit&redlink=1" class="new" title="HMMER (stranica ne postoji)">HMMER</a></li> <li><a href="/w/index.php?title=MUSCLE_(softver)&action=edit&redlink=1" class="new" title="MUSCLE (softver) (stranica ne postoji)">MUSCLE</a></li> <li><a href="/w/index.php?title=SAMtools&action=edit&redlink=1" class="new" title="SAMtools (stranica ne postoji)">SAMtools</a></li> <li><a href="/w/index.php?title=Kratki_paket_analize_oligonukleotida&action=edit&redlink=1" class="new" title="Kratki paket analize oligonukleotida (stranica ne postoji)">SOAP-paket</a></li> <li><a href="/w/index.php?title=TopHat_(bioinformatika)&action=edit&redlink=1" class="new" title="TopHat (bioinformatika) (stranica ne postoji)">TopHat</a></li></ul> </div></td></tr><tr><th scope="row" class="navbox-group" style="width:1%">Ostale</th><td class="navbox-list navbox-odd hlist" style="text-align:left;border-left-width:2px;border-left-style:solid;width:100%;padding:0px"><div style="padding:0em 0.25em"> <ul><li>Server: <a href="/wiki/ExPASy" class="mw-redirect" title="ExPASy">ExPASy</a></li> <li>Ontologija: <a class="mw-selflink selflink">Ontologija gena</a></li> <li><a href="/w/index.php?title=Rosalind_(obrazovna_platforma)&action=edit&redlink=1" class="new" title="Rosalind (obrazovna platforma) (stranica ne postoji)">Rosalind (obrazovna platforma)</a></li></ul> </div></td></tr><tr><th scope="row" class="navbox-group" style="width:1%">Institucije</th><td class="navbox-list navbox-even hlist" style="text-align:left;border-left-width:2px;border-left-style:solid;width:100%;padding:0px"><div style="padding:0em 0.25em"> <ul><li><a href="/w/index.php?title=Institut_Broad&action=edit&redlink=1" class="new" title="Institut Broad (stranica ne postoji)">Institut Broad</a></li> <li><a href="/w/index.php?title=Kineska_nacionalna_GeneBank&action=edit&redlink=1" class="new" title="Kineska nacionalna GeneBank (stranica ne postoji)">Kineska nacionalna GeneBank</a> (CNGB)</li> <li><a href="/w/index.php?title=Odsjek_za_ra%C4%8Dunarsku_biologiju&action=edit&redlink=1" class="new" title="Odsjek za računarsku biologiju (stranica ne postoji)">Odsjek za računarsku biologiju</a> (CBD)</li> <li><a href="/w/index.php?title=COSBI&action=edit&redlink=1" class="new" title="COSBI (stranica ne postoji)"> Microsoft Research - Centar za računarsku i sistemsku biologiju Univerziteta u Trentu</a> (COSBI)</li> <li><a href="/w/index.php?title=Baza_podataka_Centra_za_nauku_o_%C5%BEivotu&action=edit&redlink=1" class="new" title="Baza podataka Centra za nauku o životu (stranica ne postoji)">Baza podataka Centra za nauku o životu</a> (DBCLS)</li> <li><a href="/w/index.php?title=Japanska_DNK_baza_podataka&action=edit&redlink=1" class="new" title="Japanska DNK baza podataka (stranica ne postoji)">Japanska DNK baza podataka</a> (DDBJ)</li> <li><a href="/w/index.php?title=Evropski_institut_za_bioinformatiku&action=edit&redlink=1" class="new" title="Evropski institut za bioinformatiku (stranica ne postoji)">Evropski institut za bioinformatiku</a> (EMBL-EBI)</li> <li><a href="/w/index.php?title=Evropska_laboratorija_za_molekularnu_biologiju&action=edit&redlink=1" class="new" title="Evropska laboratorija za molekularnu biologiju (stranica ne postoji)">Evropska laboratorija za molekularnu biologiju</a> (EMBL)</li> <li><a href="/w/index.php?title=Institut_Flatiron&action=edit&redlink=1" class="new" title="Institut Flatiron (stranica ne postoji)">Institut Flatiron</a></li> <li><a href="/w/index.php?title=Institut_J._Craiga_Ventera&action=edit&redlink=1" class="new" title="Institut J. Craiga Ventera (stranica ne postoji)">Institut J. Craiga Ventera</a> (JCVI)</li> <li><a href="/w/index.php?title=Max_Planck_Institut_za_molekularnu_%C4%87elijsku_biologiju_i_genetiku&action=edit&redlink=1" class="new" title="Max Planck Institut za molekularnu ćelijsku biologiju i genetiku (stranica ne postoji)">Max Planck Institut za molekularnu ćelijsku biologiju i genetiku</a> (MPI-CBG)</li> <li><a href="/wiki/Nacionalni_centar_za_biotehnolo%C5%A1ke_informacije" title="Nacionalni centar za biotehnološke informacije">Nacionalni centar za biotehnološke informacije</a> (<a href="/wiki/NCBI" class="mw-redirect" title="NCBI">NCBI</a>)</li> <li><a href="/w/index.php?title=Nacionalni_institut_za_genetiku&action=edit&redlink=1" class="new" title="Nacionalni institut za genetiku (stranica ne postoji)">Japanski institut za genetiku</a></li> <li><a href="/w/index.php?title=Nizozemski_bioinformati%C4%8Dki_centar&action=edit&redlink=1" class="new" title="Nizozemski bioinformatički centar (stranica ne postoji)">Nizozemski bioinformatički centar</a> (NBIC)</li> <li><a href="/w/index.php?title=Filipinski_centar_za_genome&action=edit&redlink=1" class="new" title="Filipinski centar za genome (stranica ne postoji)">Filipinski centar za genome</a> (PGC)</li> <li><a href="/w/index.php?title=Scripps_Research&action=edit&redlink=1" class="new" title="Scripps Research (stranica ne postoji)">Scripps Research</a></li> <li><a href="/w/index.php?title=%C5%A0vicarski_institut_za_bioinformatiku&action=edit&redlink=1" class="new" title="Švicarski institut za bioinformatiku (stranica ne postoji)">Švicarski institut za bioinformatiku</a> (SIB)</li> <li><a href="/w/index.php?title=Institut_Welcome_Sanger&action=edit&redlink=1" class="new" title="Institut Welcome Sanger (stranica ne postoji)">Institut Welcome Sanger</a></li> <li><a href="/w/index.php?title=Institut_Whitehead&action=edit&redlink=1" class="new" title="Institut Whitehead (stranica ne postoji)">Institut Whitehead</a></li></ul> </div></td></tr><tr><th scope="row" class="navbox-group" style="width:1%">Organizacije</th><td class="navbox-list navbox-odd hlist" style="text-align:left;border-left-width:2px;border-left-style:solid;width:100%;padding:0px"><div style="padding:0em 0.25em"> <ul><li><a href="/w/index.php?title=Afri%C4%8Dko_dru%C5%A1tvo_za_bioinformatiku_i_ra%C4%8Dunarsku_biologiju&action=edit&redlink=1" class="new" title="Afričko društvo za bioinformatiku i računarsku biologiju (stranica ne postoji)">Afričko društvo za bioinformatiku i računarsku biologiju</a> (ASBCB)</li> <li><a href="/w/index.php?title=Australijski_bioinformati%C4%8Dki_resurs&action=edit&redlink=1" class="new" title="Australijski bioinformatički resurs (stranica ne postoji)">Australijski bioinformatički resurs</a> (EMBL-AR)</li> <li><a href="/w/index.php?title=EMBnet&action=edit&redlink=1" class="new" title="EMBnet (stranica ne postoji)">Evropska mreža za molekularnu biologiju</a> (EMBnet)</li> <li><a href="/w/index.php?title=Me%C4%91unarodna_saradnja_baze_podataka_nukleotidnih_sekvenci&action=edit&redlink=1" class="new" title="Međunarodna saradnja baze podataka nukleotidnih sekvenci (stranica ne postoji)">Međunarodna saradnja baze podataka nukleotidnih sekvenci</a> (INSDC)</li> <li><a href="/w/index.php?title=Me%C4%91unarodno_dru%C5%A1tvo_za_biokuriranje&action=edit&redlink=1" class="new" title="Međunarodno društvo za biokuriranje (stranica ne postoji)">Međunarodno društvo za biokuriranje</a> (ISB)</li> <li><a href="/w/index.php?title=Me%C4%91unarodno_dru%C5%A1tvo_za_ra%C4%8Dunarsku_biologiju&action=edit&redlink=1" class="new" title="Međunarodno društvo za računarsku biologiju (stranica ne postoji)">Međunarodno društvo za računarsku biologiju</a> (ISCB) <ul><li><a href="/w/index.php?title=Vije%C4%87e_studenata_Me%C4%91unarodnog_dru%C5%A1tva_za_ra%C4%8Dunarsku_biologiju&action=edit&redlink=1" class="new" title="Vijeće studenata Međunarodnog društva za računarsku biologiju (stranica ne postoji)">Studentsko vijeće</a> (ISCB-SC)</li></ul></li> <li><a href="/w/index.php?title=Institut_za_genomiku_i_integrativnu_biologiju&action=edit&redlink=1" class="new" title="Institut za genomiku i integrativnu biologiju (stranica ne postoji)">Institut za genomiku i integrativnu biologiju</a> (CSIR-IGIB)</li> <li><a href="/w/index.php?title=Japansko_dru%C5%A1tvo_za_bioinformatiku&action=edit&redlink=1" class="new" title="Japansko društvo za bioinformatiku (stranica ne postoji)">Japansko društvo za bioinformatiku</a> (JSBi)</li></ul> </div></td></tr><tr><th scope="row" class="navbox-group" style="width:1%">sastanci</th><td class="navbox-list navbox-even hlist" style="text-align:left;border-left-width:2px;border-left-style:solid;width:100%;padding:0px"><div style="padding:0em 0.25em"> <ul><li><a href="/w/index.php?title=Bazelska_konferencija_ra%C4%8Dunarske_biologije&action=edit&redlink=1" class="new" title="Bazelska konferencija računarske biologije (stranica ne postoji)">Bazelska konferencija računarske biologije‎</a> ([BC<sup>2</sup>])</li> <li><a href="/w/index.php?title=Evropska_konferencija_o_ra%C4%8Dunarskoj_biologiji&action=edit&redlink=1" class="new" title="Evropska konferencija o računarskoj biologiji (stranica ne postoji)">Evropska konferencija o računarskoj biologiji</a> (ECCB)</li> <li><a href="/w/index.php?title=Inteligentni_sistemi_za_molekularnu_biologiju&action=edit&redlink=1" class="new" title="Inteligentni sistemi za molekularnu biologiju (stranica ne postoji)">Inteligentni sistemi za molekularnu biologiju</a> (ISMB)</li> <li><a href="/w/index.php?title=Me%C4%91unarodna_konferencija_o_bioinformatici&action=edit&redlink=1" class="new" title="Međunarodna konferencija o bioinformatici (stranica ne postoji)">Međunarodna konferencija o bioinformatici</a> (InCoB)</li> <li><a href="/w/index.php?title=ISCB_Afri%C4%8Dka_ASBCB_konferencija_o_bioinformatici&action=edit&redlink=1" class="new" title="ISCB Afrička ASBCB konferencija o bioinformatici (stranica ne postoji)">ISCB Afrička ASBCB konferencija o bioinformatici</a></li> <li><a href="/w/index.php?title=Pacifi%C4%8Dki_simpozij_o_biora%C4%8Dunarstvu&action=edit&redlink=1" class="new" title="Pacifički simpozij o bioračunarstvu (stranica ne postoji)">Pacifički simpozij o bioračunarstvu</a> (PSB)</li> <li><a href="/w/index.php?title=Istra%C5%BEivanje_u_ra%C4%8Dunarskoj_molekularnoj_biologiji&action=edit&redlink=1" class="new" title="Istraživanje u računarskoj molekularnoj biologiji (stranica ne postoji)">Istraživanje u računarskoj molekularnoj biologiji</a> (RECOMB)</li></ul> </div></td></tr><tr><th scope="row" class="navbox-group" style="width:1%">Formati datoteka</th><td class="navbox-list navbox-odd hlist" style="text-align:left;border-left-width:2px;border-left-style:solid;width:100%;padding:0px"><div style="padding:0em 0.25em"> <ul><li><a href="/w/index.php?title=CRAM_(format_datoteke)&action=edit&redlink=1" class="new" title="CRAM (format datoteke) (stranica ne postoji)">CRAM format</a></li> <li><a href="/wiki/FASTA_format" class="mw-redirect" title="FASTA format">FASTA format</a></li> <li><a href="/w/index.php?title=FASTQ_format&action=edit&redlink=1" class="new" title="FASTQ format (stranica ne postoji)">FASTQ format</a></li> <li><a href="/w/index.php?title=NeXML_format&action=edit&redlink=1" class="new" title="NeXML format (stranica ne postoji)">NeXML format</a></li> <li><a href="/w/index.php?title=Nexus_fajl&action=edit&redlink=1" class="new" title="Nexus fajl (stranica ne postoji)">Nexus format</a></li> <li><a href="/w/index.php?title=Pileupski_format&action=edit&redlink=1" class="new" title="Pileupski format (stranica ne postoji)">Pileupski format</a></li> <li><a href="/w/index.php?title=SAM_(format_datoteke)&action=edit&redlink=1" class="new" title="SAM (format datoteke) (stranica ne postoji)">SAM format</a></li> <li><a href="/w/index.php?title=Stockholmski_format&action=edit&redlink=1" class="new" title="Stockholmski format (stranica ne postoji)">Stockholmski format</a></li> <li><a href="/w/index.php?title=Varijantni_%C4%87elijski_format&action=edit&redlink=1" class="new" title="Varijantni ćelijski format (stranica ne postoji)">VCF format</a></li></ul> </div></td></tr><tr><th scope="row" class="navbox-group" style="width:1%">Ostale teme</th><td class="navbox-list navbox-even hlist" style="text-align:left;border-left-width:2px;border-left-style:solid;width:100%;padding:0px"><div style="padding:0em 0.25em"> <ul><li><a href="/w/index.php?title=Ra%C4%8Dunarska_biologija&action=edit&redlink=1" class="new" title="Računarska biologija (stranica ne postoji)">Računarska biologija</a></li> <li><a href="/w/index.php?title=Spisak_biobanaka&action=edit&redlink=1" class="new" title="Spisak biobanaka (stranica ne postoji)">Spisak biobanaka</a></li> <li><a href="/w/index.php?title=Spisak_biolo%C5%A1kih_baza_podataka&action=edit&redlink=1" class="new" title="Spisak bioloških baza podataka (stranica ne postoji)">Spisak bioloških baza podataka</a></li> <li><a href="/w/index.php?title=Molecularna_filogenetika&action=edit&redlink=1" class="new" title="Molecularna filogenetika (stranica ne postoji)">Molecularna filogenetika</a></li> <li><a href="/w/index.php?title=Sekvenciranje&action=edit&redlink=1" class="new" title="Sekvenciranje (stranica ne postoji)">Sekvenciranje</a></li> <li><a href="/w/index.php?title=Baze_podataka_sekvenci&action=edit&redlink=1" class="new" title="Baze podataka sekvenci (stranica ne postoji)">Baze podataka sekvenci</a></li> <li><a href="/w/index.php?title=Poravnavanje_sekvence&action=edit&redlink=1" class="new" title="Poravnavanje sekvence (stranica ne postoji)">Poravnavanje sekvence</a></li></ul> </div></td></tr><tr><td class="navbox-abovebelow hlist" colspan="2"><div> <ul><li><span typeof="mw:File"><span><img src="//upload.wikimedia.org/wikipedia/commons/thumb/e/e0/Symbol_question.svg/16px-Symbol_question.svg.png" decoding="async" width="16" height="16" class="mw-file-element" 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