Virological - Discussion forum for analysis of virus genomes

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class="crawler browser-update"> <header> <a href="/"> Virological </a> </header> <div id="main-outlet" class="wrap" role="main"> <div class="topic-list-container" itemscope itemtype='http://schema.org/ItemList'> <meta itemprop='itemListOrder' content='http://schema.org/ItemListOrderDescending'> <table class='topic-list'> <thead> <tr> <th>Topic</th> <th></th> <th class="replies">Replies</th> <th class="views">Views</th> <th>Activity</th> </tr> </thead> <tbody> <tr class="topic-list-item"> <td class="main-link" itemprop='itemListElement' itemscope itemtype='http://schema.org/ListItem'> <meta itemprop='position' content='1'> <span class="link-top-line"> <a itemprop='url' href='https://virological.org/t/phylodynamic-analysis-176-genomes-6-mar-2020/356' class='title raw-link raw-topic-link'>Phylodynamic Analysis | 176 genomes | 6 Mar 2020</a> </span> <div class="link-bottom-line"> <a href='/c/novel-2019-coronavirus/ncov-2019-genomic-epidemiology/36' class='badge-wrapper bullet'> <span class='badge-category-bg' style='background-color: #12A89D'></span> <span class='badge-category clear-badge'> <span class='category-name'>nCoV-2019 Genomic Epidemiology</span> </span> </a> <div class="discourse-tags"> </div> </div> <p class='excerpt'> Phylogenetic analysis of nCoV-2019 genomes 6-Mar-2020 Andrew Rambaut, University of Edinburgh, Edinburgh UK <a href="/cdn-cgi/l/email-protection" class="__cf_email__" data-cfemail="a2c38cd0c3cfc0c3d7d6e2c7c68cc3c18cd7c9">[email protected]</a> This is a brief report outlining a simple phylogenetic analysis of publicly shared genome… </p> </td> <td class='posters'> <a href="https://virological.org/u/arambaut" class="latest"> <img width="25" height="25" src="/user_avatar/virological.org/arambaut/25/425_2.png" class="avatar" title='arambaut - Original Poster, Most Recent Poster' aria-label='arambaut - Original Poster, Most Recent Poster'> </a> <a href="https://virological.org/u/sebastian.duchene" class=""> <img width="25" height="25" src="/letter_avatar_proxy/v4/letter/s/c77e96/25.png" class="avatar" title='sebastian.duchene - Frequent Poster' aria-label='sebastian.duchene - Frequent Poster'> </a> <a href="https://virological.org/u/yhg926" class=""> <img width="25" height="25" src="/letter_avatar_proxy/v4/letter/y/f0a364/25.png" class="avatar" title='yhg926 - Frequent Poster' aria-label='yhg926 - Frequent Poster'> </a> <a href="https://virological.org/u/ssagi" class=""> <img width="25" height="25" src="/user_avatar/virological.org/ssagi/25/822_2.png" class="avatar" title='ssagi - Frequent Poster' aria-label='ssagi - Frequent Poster'> </a> <a href="https://virological.org/u/mscotch" class=""> <img width="25" height="25" src="/user_avatar/virological.org/mscotch/25/824_2.png" class="avatar" title='mscotch - Frequent Poster' aria-label='mscotch - Frequent Poster'> </a> </td> <td class="replies"> <span class='posts' title='posts'>17</span> </td> <td class="views"> <span class='views' title='views'>145688</span> </td> <td> April 2, 2020 </td> </tr> <tr class="topic-list-item"> <td class="main-link" itemprop='itemListElement' itemscope itemtype='http://schema.org/ListItem'> <meta itemprop='position' content='2'> <span class="link-top-line"> <a itemprop='url' href='https://virological.org/t/preliminary-analysis-of-98-genomic-sequences-of-mpxv-clade-ib-cases-from-burundi-july-to-september-2024/987' class='title raw-link raw-topic-link'>Preliminary analysis of 98 genomic sequences of MPXV clade Ib cases from Burundi, July to September 2024</a> </span> <div class="link-bottom-line"> <a href='/c/mpxv/46' class='badge-wrapper bullet'> <span class='badge-category-bg' style='background-color: #0088CC'></span> <span class='badge-category clear-badge'> <span class='category-name'>MPXV</span> </span> </a> <div class="discourse-tags"> </div> </div> </td> <td class='posters'> <a href="https://virological.org/u/NZOYIKORERA" class="latest single"> <img width="25" height="25" src="/letter_avatar_proxy/v4/letter/n/bb73d2/25.png" class="avatar" title='NZOYIKORERA - Original Poster, Most Recent Poster' aria-label='NZOYIKORERA - Original Poster, Most Recent Poster'> </a> </td> <td class="replies"> <span class='posts' title='posts'>0</span> </td> <td class="views"> <span class='views' title='views'>788</span> </td> <td> November 19, 2024 </td> </tr> <tr class="topic-list-item"> <td class="main-link" itemprop='itemListElement' itemscope itemtype='http://schema.org/ListItem'> <meta itemprop='position' content='3'> <span class="link-top-line"> <a itemprop='url' href='https://virological.org/t/october-2024-lassa-virus-introduced-into-iowa-usa-from-liberia/985' class='title raw-link raw-topic-link'>October 2024 Lassa virus introduced into Iowa, USA from Liberia</a> </span> <div class="link-bottom-line"> <a href='/c/lassa-virus/23' class='badge-wrapper bullet'> <span class='badge-category-bg' style='background-color: #12A89D'></span> <span class='badge-category clear-badge'> <span class='category-name'>Lassa virus</span> </span> </a> <div class="discourse-tags"> </div> </div> </td> <td class='posters'> <a href="https://virological.org/u/evk3" class="latest single"> <img width="25" height="25" src="/letter_avatar_proxy/v4/letter/e/c68b51/25.png" class="avatar" title='evk3 - Original Poster, Most Recent Poster' aria-label='evk3 - Original Poster, Most Recent Poster'> </a> </td> <td class="replies"> <span class='posts' title='posts'>0</span> </td> <td class="views"> <span class='views' title='views'>339</span> </td> <td> November 18, 2024 </td> </tr> <tr class="topic-list-item"> <td class="main-link" itemprop='itemListElement' itemscope itemtype='http://schema.org/ListItem'> <meta itemprop='position' content='4'> <span class="link-top-line"> <a itemprop='url' href='https://virological.org/t/apobec3-deaminase-editing-supports-human-to-human-transmission-in-escalating-mpox-outbreaks-of-both-clade-ia-and-ib-in-kinshasa-democratic-republic-of-the-congo-july-september-2024/982' class='title raw-link raw-topic-link'>APOBEC3 deaminase editing supports human-to-human transmission in escalating Mpox outbreaks of both Clade Ia and Ib in Kinshasa, Democratic Republic of the Congo, July-September 2024</a> </span> <div class="link-bottom-line"> <a href='/c/mpxv/evolution/48' class='badge-wrapper bullet'> <span class='badge-category-bg' style='background-color: #12A89D'></span> <span class='badge-category clear-badge'> <span class='category-name'>Evolution</span> </span> </a> <div class="discourse-tags"> </div> </div> </td> <td class='posters'> <a href="https://virological.org/u/mbalaplacide" class="latest single"> <img width="25" height="25" src="/user_avatar/virological.org/mbalaplacide/25/452_2.png" class="avatar" title='mbalaplacide - Original Poster, Most Recent Poster' aria-label='mbalaplacide - Original Poster, Most Recent Poster'> </a> </td> <td class="replies"> <span class='posts' title='posts'>0</span> </td> <td class="views"> <span class='views' title='views'>4145</span> </td> <td> October 22, 2024 </td> </tr> <tr class="topic-list-item"> <td class="main-link" itemprop='itemListElement' itemscope itemtype='http://schema.org/ListItem'> <meta itemprop='position' content='5'> <span class="link-top-line"> <a itemprop='url' href='https://virological.org/t/clade-ib-mpox-in-the-democratic-republic-of-the-congo-drc-clinical-and-virological-report-of-the-first-case-in-kinshasa-the-capital-city/978' class='title raw-link raw-topic-link'>Clade Ib Mpox in the Democratic Republic of the Congo (DRC): clinical and virological report of the first case in Kinshasa, the capital city</a> </span> <div class="link-bottom-line"> <a href='/c/mpxv/46' class='badge-wrapper bullet'> <span class='badge-category-bg' style='background-color: #0088CC'></span> <span class='badge-category clear-badge'> <span class='category-name'>MPXV</span> </span> </a> <div class="discourse-tags"> </div> </div> </td> <td class='posters'> <a href="https://virological.org/u/Eddy_K.Lusamaki" class="latest"> <img width="25" height="25" src="/user_avatar/virological.org/eddy_k.lusamaki/25/1801_2.png" class="avatar" title='Eddy_K.Lusamaki - Original Poster, Most Recent Poster' aria-label='Eddy_K.Lusamaki - Original Poster, Most Recent Poster'> </a> <a href="https://virological.org/u/MarliesJFG" class=""> <img width="25" height="25" src="/user_avatar/virological.org/marliesjfg/25/1806_2.png" class="avatar" title='MarliesJFG - Frequent Poster' aria-label='MarliesJFG - Frequent Poster'> </a> </td> <td class="replies"> <span class='posts' title='posts'>2</span> </td> <td class="views"> <span class='views' title='views'>2875</span> </td> <td> September 10, 2024 </td> </tr> <tr class="topic-list-item"> <td class="main-link" itemprop='itemListElement' itemscope itemtype='http://schema.org/ListItem'> <meta itemprop='position' content='6'> <span class="link-top-line"> <a itemprop='url' href='https://virological.org/t/introducing-pathoplexus/977' class='title raw-link raw-topic-link'>Introducing Pathoplexus</a> </span> <div class="link-bottom-line"> <a href='/c/software/26' class='badge-wrapper bullet'> <span class='badge-category-bg' style='background-color: #BF1E2E'></span> <span class='badge-category clear-badge'> <span class='category-name'>Software</span> </span> </a> <div class="discourse-tags"> </div> </div> </td> <td class='posters'> <a href="https://virological.org/u/emmahodcroft" class="latest single"> <img width="25" height="25" src="/user_avatar/virological.org/emmahodcroft/25/437_2.png" class="avatar" title='emmahodcroft - Original Poster, Most Recent Poster' aria-label='emmahodcroft - Original Poster, Most Recent Poster'> </a> </td> <td class="replies"> <span class='posts' title='posts'>0</span> </td> <td class="views"> <span class='views' title='views'>972</span> </td> <td> August 27, 2024 </td> </tr> <tr class="topic-list-item"> <td class="main-link" itemprop='itemListElement' itemscope itemtype='http://schema.org/ListItem'> <meta itemprop='position' content='7'> <span class="link-top-line"> <a itemprop='url' href='https://virological.org/t/draft-genome-of-the-first-case-of-mpox-virus-detected-in-kenya-august-2024/976' class='title raw-link raw-topic-link'>Draft genome of the first case of mpox virus detected in Kenya, August 2024</a> </span> <div class="link-bottom-line"> <a href='/c/mpxv/evolution/48' class='badge-wrapper bullet'> <span class='badge-category-bg' style='background-color: #12A89D'></span> <span class='badge-category clear-badge'> <span class='category-name'>Evolution</span> </span> </a> <div class="discourse-tags"> </div> </div> </td> <td class='posters'> <a href="https://virological.org/u/slangat" class="latest single"> <img width="25" height="25" 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2024</a> </span> <div class="link-bottom-line"> <a href='/c/other-viruses/53' class='badge-wrapper bullet'> <span class='badge-category-bg' style='background-color: #9EB83B'></span> <span class='badge-category clear-badge'> <span class='category-name'>Other Viruses</span> </span> </a> <div class="discourse-tags"> </div> </div> </td> <td class='posters'> <a href="https://virological.org/u/gbellobr" class="latest single"> <img width="25" height="25" src="/letter_avatar_proxy/v4/letter/g/6bbea6/25.png" class="avatar" title='gbellobr - Original Poster, Most Recent Poster' aria-label='gbellobr - Original Poster, Most Recent Poster'> </a> </td> <td class="replies"> <span class='posts' title='posts'>1</span> </td> <td class="views"> <span class='views' title='views'>12434</span> </td> <td> July 24, 2024 </td> </tr> <tr class="topic-list-item"> <td class="main-link" itemprop='itemListElement' itemscope itemtype='http://schema.org/ListItem'> <meta itemprop='position' content='11'> <span 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<tr class="topic-list-item"> <td class="main-link" itemprop='itemListElement' itemscope itemtype='http://schema.org/ListItem'> <meta itemprop='position' content='12'> <span class="link-top-line"> <a itemprop='url' href='https://virological.org/t/mpox-virus-resurgence-in-new-york-city-2024/973' class='title raw-link raw-topic-link'>Mpox virus resurgence in New York City, 2024</a> </span> <div class="link-bottom-line"> <a href='/c/mpxv/evolution/48' class='badge-wrapper bullet'> <span class='badge-category-bg' style='background-color: #12A89D'></span> <span class='badge-category clear-badge'> <span class='category-name'>Evolution</span> </span> </a> <div class="discourse-tags"> </div> </div> </td> <td class='posters'> <a href="https://virological.org/u/jwertheim" class="latest single"> <img width="25" height="25" src="/letter_avatar_proxy/v4/letter/j/e47774/25.png" class="avatar" title='jwertheim - Original Poster, Most Recent Poster' aria-label='jwertheim - Original Poster, Most Recent Poster'> </a> </td> <td class="replies"> <span class='posts' title='posts'>0</span> </td> <td class="views"> <span class='views' title='views'>2574</span> </td> <td> June 11, 2024 </td> </tr> <tr class="topic-list-item"> <td class="main-link" itemprop='itemListElement' itemscope itemtype='http://schema.org/ListItem'> <meta itemprop='position' content='13'> <span class="link-top-line"> <a itemprop='url' href='https://virological.org/t/preliminary-report-on-genomic-epidemiology-of-the-2024-h5n1-influenza-a-virus-outbreak-in-u-s-cattle-part-1-of-2/970' class='title raw-link raw-topic-link'>Preliminary report on genomic epidemiology of the 2024 H5N1 influenza A virus outbreak in U.S. cattle (Part 1 of 2)</a> </span> <div class="link-bottom-line"> <a href='/c/influenza-virus/h5n1-global/52' class='badge-wrapper bullet'> <span class='badge-category-bg' style='background-color: #12A89D'></span> <span class='badge-category clear-badge'> <span class='category-name'>H5N1-global</span> </span> 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class="topic-list-item"> <td class="main-link" itemprop='itemListElement' itemscope itemtype='http://schema.org/ListItem'> <meta itemprop='position' content='14'> <span class="link-top-line"> <a itemprop='url' href='https://virological.org/t/note-about-availability-of-h5n1-2-3-4-4b-consensus-sequences-from-cattle-and-other-species/967' class='title raw-link raw-topic-link'>Note about availability of H5N1 2.3.4.4b consensus sequences from cattle and other species:</a> </span> <div class="link-bottom-line"> <a href='/c/influenza-virus/h5n1-global/52' class='badge-wrapper bullet'> <span class='badge-category-bg' style='background-color: #12A89D'></span> <span class='badge-category clear-badge'> <span class='category-name'>H5N1-global</span> </span> </a> <div class="discourse-tags"> </div> </div> </td> <td class='posters'> <a href="https://virological.org/u/worobey" class=""> <img width="25" height="25" src="/letter_avatar_proxy/v4/letter/w/e68b1a/25.png" class="avatar" title='worobey - Original Poster' aria-label='worobey - Original Poster'> </a> <a href="https://virological.org/u/Brian_Foley" class="latest"> <img width="25" height="25" src="/user_avatar/virological.org/brian_foley/25/598_2.png" class="avatar" title='Brian_Foley - Most Recent Poster' aria-label='Brian_Foley - Most Recent Poster'> </a> </td> <td class="replies"> <span class='posts' title='posts'>1</span> </td> <td class="views"> <span class='views' title='views'>6756</span> </td> <td> May 5, 2024 </td> </tr> <tr class="topic-list-item"> <td class="main-link" itemprop='itemListElement' itemscope itemtype='http://schema.org/ListItem'> <meta itemprop='position' content='15'> <span class="link-top-line"> <a itemprop='url' href='https://virological.org/t/unbiased-metagenomic-sequencing-reveals-hepatitis-a-virus-as-an-underestimated-cause-of-undiagnosed-febrile-illness-in-kenya/965' class='title raw-link raw-topic-link'>Unbiased metagenomic sequencing reveals Hepatitis A virus as an underestimated cause of 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itemprop='position' content='16'> <span class="link-top-line"> <a itemprop='url' href='https://virological.org/t/novel-clade-i-genome-sequences-from-the-ongoing-mpox-virus-outbreak-of-kamituga-in-south-kivu-province-democratic-republic-of-congo/956' class='title raw-link raw-topic-link'>Novel Clade I genome sequences from the ongoing mpox virus outbreak of Kamituga in South Kivu province, Democratic Republic of Congo</a> </span> <div class="link-bottom-line"> <a href='/c/mpxv/46' class='badge-wrapper bullet'> <span class='badge-category-bg' style='background-color: #0088CC'></span> <span class='badge-category clear-badge'> <span class='category-name'>MPXV</span> </span> </a> <div class="discourse-tags"> </div> </div> </td> <td class='posters'> <a href="https://virological.org/u/Leandre" class="latest"> <img width="25" height="25" src="/letter_avatar_proxy/v4/letter/l/df788c/25.png" class="avatar" title='Leandre - Original Poster, Most Recent Poster' aria-label='Leandre - Original 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itemtype='http://schema.org/ListItem'> <meta itemprop='position' content='20'> <span class="link-top-line"> <a itemprop='url' href='https://virological.org/t/preliminary-results-from-two-novel-artic-style-amplicon-based-sequencing-approaches-for-rsv-a-and-rsv-b/918' class='title raw-link raw-topic-link'>Preliminary Results from two novel ARTIC-style amplicon based sequencing approaches for RSV A and RSV B</a> </span> <div class="link-bottom-line"> <a href='/c/rsv/54' class='badge-wrapper bullet'> <span class='badge-category-bg' style='background-color: #BF1E2E'></span> <span class='badge-category clear-badge'> <span class='category-name'>RSV</span> </span> </a> <div class="discourse-tags"> </div> </div> </td> <td class='posters'> <a href="https://virological.org/u/dmaloney" class="latest single"> <img width="25" height="25" src="/letter_avatar_proxy/v4/letter/d/d07c76/25.png" class="avatar" title='dmaloney - Original Poster, Most Recent Poster' aria-label='dmaloney - Original Poster, 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content='23'> <span class="link-top-line"> <a itemprop='url' href='https://virological.org/t/niaid-data-ecosystem-discovery-portal/942' class='title raw-link raw-topic-link'>NIAID Data Ecosystem Discovery Portal</a> </span> <div class="link-bottom-line"> <a href='/c/software/26' class='badge-wrapper bullet'> <span class='badge-category-bg' style='background-color: #BF1E2E'></span> <span class='badge-category clear-badge'> <span class='category-name'>Software</span> </span> </a> <div class="discourse-tags"> </div> </div> </td> <td class='posters'> <a href="https://virological.org/u/emilyhaag" class="latest single"> <img width="25" height="25" src="/letter_avatar_proxy/v4/letter/e/94ad74/25.png" class="avatar" title='emilyhaag - Original Poster, Most Recent Poster' aria-label='emilyhaag - Original Poster, Most Recent Poster'> </a> </td> <td class="replies"> <span class='posts' title='posts'>0</span> </td> <td class="views"> <span class='views' title='views'>2402</span> </td> <td> August 16, 2023 </td> </tr> <tr class="topic-list-item"> <td class="main-link" itemprop='itemListElement' itemscope itemtype='http://schema.org/ListItem'> <meta itemprop='position' content='24'> <span class="link-top-line"> <a itemprop='url' href='https://virological.org/t/update-to-observations-about-putative-apobec3-deaminase-editing-in-the-light-of-new-genomes-from-usa/847' class='title raw-link raw-topic-link'>Update to observations about putative APOBEC3 deaminase editing in the light of new genomes from USA</a> </span> <div class="link-bottom-line"> <a href='/c/mpxv/evolution/48' class='badge-wrapper bullet'> <span class='badge-category-bg' style='background-color: #12A89D'></span> <span class='badge-category clear-badge'> <span class='category-name'>Evolution</span> </span> </a> <div class="discourse-tags"> </div> </div> </td> <td class='posters'> <a href="https://virological.org/u/arambaut" class="latest single"> <img width="25" height="25" 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