Fiji

<!DOCTYPE html> <html> <head> <title>Fiji</title> <meta charset="utf-8" /> <meta name="viewport" content="width=device-width, initial-scale=1, maximum-scale=3" /> <meta content="ImageJ Wiki" property="og:site_name"> <meta content="Fiji" property="og:title"> <meta content="article" property="og:type"> <meta content="The ImageJ wiki is a community-edited knowledge base on topics relating to ImageJ, a public domain program for processing and analyzing scientific images, and its ecosystem of derivatives and variants, including ImageJ2, Fiji, and others." property="og:description"> <meta content="https://imagej.github.io/software/fiji/index" property="og:url"> <meta content="https://imagej.github.io/media/icons/imagej2.png" property="og:image"> <link rel="apple-touch-icon" sizes="180x180" href="/apple-touch-icon.png"> <link rel="icon" type="image/png" sizes="32x32" href="/favicon-32x32.png"> <link rel="icon" type="image/png" sizes="16x16" href="/favicon-16x16.png"> <link rel="manifest" href="/site.webmanifest"> <link rel="mask-icon" href="/safari-pinned-tab.svg" color="#5bbad5"> <meta name="msapplication-TileColor" content="#da532c"> <meta name="theme-color" content="#ffffff"> <link rel="stylesheet" href="/assets/css/lightbox.min.css" /> <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/instantsearch.css@7/themes/algolia-min.css"/> <script type="text/javascript" src="https://cdn.jsdelivr.net/npm/dygraphs@2.1.0/dist/dygraph.min.js"></script> <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/dygraphs@2.1.0/dist/dygraph.min.css" /> <link rel="stylesheet" href="/assets/css/main.css" /> <link rel="stylesheet" href="/assets/css/layout.css"/> <link rel="stylesheet" href="/assets/css/includes.css" /> <link rel="stylesheet" href="/assets/css/dock.css"/> <noscript><link rel="stylesheet" href="/assets/css/noscript.css" /></noscript> <link rel="stylesheet" href="/assets/css/page.css" /> </head> <body class="is-preload">  <section id="top-bar"> <a href="/"><img id="site-logo" src="/media/icons/imagej2.png"></a> <div id="search-panel"> <div id="search-box"></div> </div> </section>  <div class="page-info"> <a href="https://github.com/imagej/imagej.github.io/commits/main/_pages/software/fiji/index.md">Page history</a> <a href="https://github.com/imagej/imagej.github.io/edit/main/_pages/software/fiji/index.md">Edit this page</a> <a href="/editing">How do I edit this website?</a></div> <section id="left-column" class="sidebar dock">  <div class="menu dockable"> <div class="drag-handle"></div><h3>ImageJ Docs</h3> <ul> <li><a href="/downloads">Download</a></li> <li><details><summary>Learn</summary><ul> <li><details><summary><a href="/learn">ImageJ Basics</a></summary><ul> <li><a href="/tutorials">Tutorials</a></li> <li><a href="/learn/user-guides">User Guides</a></li> <li><a href="/learn/keyboard-shortcuts">Keyboard Shortcuts</a></li> <li><a href="/learn/tips-and-tricks">Tips and Tricks</a></li> <li><a href="/learn/troubleshooting">Troubleshooting</a></li> <li><a href="/learn/faq">Frequently Asked Questions</a></li> <li><details><summary><a href="/platforms">Supported Platforms</a></summary><ul> <li><a href="/platforms/windows">Windows</a></li> <li><a href="/platforms/macos">MacOS</a></li> <li><a href="/platforms/linux">Linux</a></li> <li><a href="/platforms/pi">Raspberry Pi</a></li> <li><a href="/platforms/android">Android</a></li> </ul></details></li>  <li><details><summary><a href="/formats">File Formats</a></summary><ul> <li><a href="/formats/bio-formats">Bio-Formats</a></li> <li><a href="/formats/video">Video formats</a></li> <li><a href="/formats/quicktime">QuickTime</a></li> <li><a href="/formats/tiff">TIFF</a></li> <li><a href="/formats/pdf">PDF</a></li> <li><a href="/formats/dicom">DICOM</a></li> <li><a href="/formats/lsm">Zeiss LSM</a></li> <li><a href="/formats/olympus">Olympus VSI</a></li> <li><a href="/formats/lurawave">Opera Flex</a></li> <li><a href="/formats/fib-sem">FIB-SEM</a></li> </ul></details></li>  </ul></details></li>  <li><details><summary><a href="/imaging">Scientific Imaging</a></summary><ul> <li><a href="/imaging/principles">Principles of Scientific Imaging</a></li> <li><a href="/imaging/annotating-images">Annotating Images</a></li> <li><a href="/imaging/colocalization-analysis">Colocalization</a></li> <li><a href="/imaging/color-image-processing">Color Image Processing</a></li> <li><a href="/imaging/deconvolution">Deconvolution</a></li> <li><a href="/imaging/image-intensity-processing">Image Intensity Processing</a></li> <li><a href="/imaging/particle-analysis">Particle Analysis</a></li> <li><a href="/imaging/registration">Registration</a></li> <li><a href="/imaging/segmentation">Segmentation</a></li> <li><a href="/imaging/stack-slice-manipulations">Stack-slice Manipulations</a></li> <li><a href="/imaging/t-functions">T-functions</a></li> <li><a href="/imaging/tracking">Tracking</a></li> <li><a href="/imaging/visualization">Visualization</a></li> <li><a href="/imaging/z-functions">Z-functions</a></li> </ul></details></li>  </ul></details></li>  <li><details><summary><a href="/plugins">Extend</a></summary><ul> <li><a href="/list-of-extensions">List of Extensions</a></li> <li><details><summary><a href="/update-sites">Update Sites</a></summary><ul> <li><a href="/list-of-update-sites">List of Update Sites</a></li> <li><a href="/update-sites/following">Following an Update Site</a></li> <li><a href="/update-sites/setup">Creating an Update Site</a></li> <li><a href="/update-sites/tos">Terms of Service</a></li> <li><a href="/update-sites/automatic-uploads">Automatic Upload</a></li> <li><a href="/update-sites/core-uploads">Uploading to Core Sites</a></li> <li><a href="/update-sites/faq">Update Sites FAQ</a></li> <li><a href="/update-sites/stats">Statistics</a></li> </ul></details></li>  <li><details><summary><a href="/scripting">Scripting</a></summary><ul> <li><a href="/scripting/basics">Scripting Basics</a></li> <li><a href="/scripting/script-editor">Script Editor</a></li> <li><a href="/scripting/parameters">Parameters</a></li> <li><a href="/scripting/user-input">User Input</a></li> <li><a href="/scripting/auto-imports">Auto Import</a></li> <li><a href="/scripting/templates">Templates</a></li> <li><a href="/scripting/batch">Batch Processing</a></li> <li><a href="/scripting/headless">Running Headlessly</a></li> <li><a href="/scripting/comparisons">Scripting Comparisons</a></li> <li><a href="/scripting/toolbox">Toolbox</a></li> <li><details><summary>Languages</summary><ul> <li><a href="/scripting/beanshell">BeanShell Scripting</a></li> <li><a href="/scripting/groovy">Groovy Scripting</a></li> <li><a href="/scripting/macro">ImageJ Macro</a></li> <li><a href="/scripting/javascript">JavaScript</a></li> <li><a href="/scripting/clojure">Lisp (Clojure)</a></li> <li><a href="/scripting/matlab">MATLAB</a></li> <li><a href="/scripting/jython">Python (Jython)</a></li> <li><a href="/scripting/python">Python (native)</a></li> <li><a href="/scripting/renjin">R (Renjin)</a></li> <li><a href="/scripting/jruby">Ruby (JRuby)</a></li> <li><a href="/scripting/scala">Scala Scripting</a></li> </ul></details></li>  </ul></details></li>  <li><details><summary><a href="/develop">Development</a></summary><ul> <li><a href="/develop/philosophy">Philosophy</a></li> <li><a href="/develop/architecture">Architecture</a></li> <li><a href="/develop/source">Source code</a></li> <li><a href="/develop/project-management">Project management</a></li> <li><a href="/develop/coding-style">Coding style</a></li> <li><a href="/develop/javadoc">Using Javadoc</a></li> <li><a href="/develop/debugging">Debugging</a></li> <li><a href="/develop/wish-list">Wish list</a></li> <li><details><summary>Tools</summary><ul> <li><a href="/develop/github">GitHub</a></li> <li><a href="/develop/maven">Maven</a></li> <li><a href="/develop/ci">CI/CD</a></li> <li><a href="/develop/dotfiles">Dotfiles</a></li> <li><details><summary><a href="/develop/ides">IDEs</a></summary><ul> <li><a href="/develop/eclipse">Eclipse</a></li> <li><a href="/develop/netbeans">NetBeans</a></li> <li><a href="/develop/intellij">IntelliJ IDEA</a></li> <li><a href="/develop/command-line">Command Line</a></li> </ul></details></li> </ul></details></li>  <li><details><summary>Guides</summary><ul> <li><a href="/develop/plugins">Writing plugins</a></li> <li><a href="/develop/improving-the-code">Contributing to a plugin</a></li> <li><a href="/develop/releasing">Development lifecycle</a></li> <li><a href="/develop/building-a-pom">Building a POM</a></li> <li><a href="/develop/debugging-exercises">Hands-on debugging</a></li> <li><a href="/develop/writing-ops">Adding new ops</a></li> <li><a href="/develop/formats">Adding new formats</a></li> <li><a href="/develop/native-libraries">Using native libraries</a></li> <li><a href="/develop/tips">Tips for developers</a></li> <li><a href="/develop/cpp-tips">Tips for C++ developers</a></li> <li><a href="/develop/ij1-plugins">ImageJ 1.x plugins</a></li> <li><a href="/develop/versioning">Versioning</a></li> <li><a href="/develop/logging">Logging</a></li> <li><a href="/develop/uber-jars">Uber-JARs</a></li> </ul></details></li>  <li><details><summary><a href="/develop/git">Git</a></summary><ul> <li><a href="/develop/git/eclipse">Git in Eclipse (EGit)</a></li> <li><a href="/develop/git/mini-howto">Git mini howto</a></li> <li><a href="/develop/git/workshop">Git workshop</a></li> <li><a href="/develop/git/conflicts">Git conflicts</a></li> <li><a href="/develop/git/topic-branches">Git topic branches</a></li> <li><a href="/develop/git/notes">Git notes</a></li> <li><a href="/develop/git/reflogs">Git reflogs</a></li> <li><a href="/develop/git/submodules">Git submodules</a></li> <li><a href="/develop/git/pinpoint-regressions">How to pinpoint regressions</a></li> <li><a href="/develop/git/publish-a-repository">How to publish a git repository</a></li> <li><a href="/develop/git/extract-a-subproject">How to extract a subproject</a></li> </ul></details></li>  </ul></details></li>  </ul></details></li>  <li><details><summary><a href="/contribute">Contribute</a></summary><ul> <li><a href="/contribute/citing">Citing</a></li> <li><a href="/people">Contributors</a></li> <li><a href="/orgs">Organizations</a></li> <li><a href="/contribute/governance">Governance</a></li> <li><a href="/contribute/funding">Funding</a></li> <li><a href="/contribute/fiji">Contributing to Fiji</a></li> <li><details><summary><a href="/licensing">Licensing</a></summary><ul> <li><details><summary><a href="/licensing/open-source">Open Source</a></summary><ul> <li><a href="/licensing/apache">Apache</a></li> <li><a href="/licensing/bsd">BSD</a></li> <li><a href="/licensing/epl">EPL</a></li> <li><a href="/licensing/gpl">GPL</a></li> <li><a href="/licensing/lgpl">LGPL</a></li> <li><a href="/licensing/mit">MIT</a></li> <li><a href="/licensing/public-domain">Public domain</a></li> <li><a href="/licensing/big">BIG</a></li> </ul></details></li>  <li><a href="/licensing/closed-source">Proprietary</a></li> </ul></details></li>  <li><details><summary><a href="/editing">Editing the Wiki</a></summary><ul> <li><a href="/editing/advanced">Advanced Editing</a></li> <li><a href="/editing/buttons">Buttons</a></li> <li><a href="/editing/citations">Citations</a></li> <li><a href="/editing/code">Source Code</a></li> <li><a href="/editing/debugging">Debugging</a></li> <li><a href="/editing/headers">Headers</a></li> <li><a href="/editing/icons">Icons</a></li> <li><a href="/editing/images">Images</a></li> <li><a href="/editing/keys">Keyboard Shortcuts</a></li> <li><a href="/editing/linking">Linking</a></li> <li><a href="/editing/math">Math Expressions</a></li> <li><a href="/editing/menu-paths">Menu Paths</a></li> <li><a href="/editing/navigation">Navigation</a></li> <li><a href="/editing/notices">Notices</a></li> <li><a href="/editing/people">People</a></li> <li><a href="/editing/pitfalls">Pitfalls</a></li> <li><a href="/editing/quizzes">Quizzes</a></li> <li><a href="/editing/statbox">Statbox</a></li> <li><a href="/editing/symbols">Symbols</a></li> <li><a href="/editing/tables">Tables</a></li> <li><a href="/editing/tooltips">Tooltips</a></li> <li><a href="/editing/videos">Videos</a></li> <li><a href="/editing/whitespace">Whitespace</a></li> </ul></details></li>  </ul></details></li>  <li><details><summary><a href="/discuss">Discuss</a></summary><ul> <li><a href="/discuss/bugs">Reporting Issues</a></li> <li><a href="/discuss/mailing-lists">Mailing Lists</a></li> <li><a href="/discuss/chat">Chat</a></li> </ul></details></li>  <li><details open><summary>Explore</summary><ul> <li><a href="/news">News</a></li> <li><details><summary><a href="/events">Events</a></summary><ul> <li><a href="/events/presentations">Presentations</a></li> <li><a href="/events/conferences">Conferences</a></li> <li><a href="/events/hackathons">Hackathons</a></li> <li><a href="/events">More...</a></li> </ul></details></li>  <li><details><summary><a href="/libs">Libraries</a></summary><ul> <li><a href="/libs/imagej-ops">ImageJ Ops</a></li> <li><a href="/libs/imagej-common">ImageJ Common</a></li> <li><a href="/libs/imagej-legacy">ImageJ Legacy</a></li> <li><a href="/libs/scijava">SciJava</a></li> <li><a href="/libs/scifio">SCIFIO</a></li> <li><details><summary><a href="/libs/imglib2">ImgLib2</a></summary><ul> <li><a href="/libs/imglib2/getting-started">Getting Started</a></li> <li><a href="/libs/imglib2/accessors">Accessors</a></li> <li><a href="/libs/imglib2/accessibles">Accessibles</a></li> <li><a href="/libs/imglib2/examples">Examples</a></li> <li><a href="/libs/imglib2/workshop-introductory">Introductory Workshop</a></li> <li><a href="/libs/imglib2/workshop-advanced">Advanced Workshop</a></li> <li><a href="/libs/imglib2/matlab">ImgLib2 images in MATLAB</a></li> <li><a href="/libs/imglib2/benchmarks">Benchmarks</a></li> <li><a href="/libs/imglib2/faq">FAQ</a></li> <li><a href="/libs/imglib2/developing">Developing ImgLib2</a></li> <li><a href="/libs/imglib2/discussion">ImgLib2 Discussion</a></li> </ul></details></li>  <li><a href="/libs">More...</a></li> </ul></details></li>  <li><details open><summary><a href="/software">Software</a></summary><ul> <li><a href="/software/nih-image">NIH Image</a></li> <li><a href="/software/imagej">ImageJ</a></li> <li><a href="/software/imagej2">ImageJ2</a></li> <li><a class="current-page">Fiji</a></li> <li><a href="/software">More...</a></li> </ul></details></li>  </ul></details></li>  </ul> </div> </section> <section id="right-column" class="sidebar dock">  <script src="/assets/js/maven.js"></script> <script> function refreshComponent() { var statboxName = document.getElementById('statbox-name'); if (statboxName) statboxName.innerHTML = 'Reloading...'; fillStatsFromArtifact('sc.fiji:fiji', ''); } refreshComponent(); </script><div id="statbox" class="dockable" style="position: relative;"> <h3>Vital statistics</h3> <div class="drag-handle"></div> <button class="btn-refresh" onclick="refreshComponent()"><i class="fa fa-sync" style="pointer-events: none;"></i></button> <table><tr><td id="statbox-header" colspan=2><p id="statbox-image"><img src="/media/icons/fiji.svg"></p> <p id="statbox-name">Loading...</p></td></tr><tr><th>Source</th> <td id="component-source">none</td></tr><tr><th>License</th> <td id="component-license"></td></tr><tr><th>Release</th> <td id="component-release"></td></tr><tr><th>Date</th> <td id="component-date"></td></tr><tr><th>Development status</th> <td id="component-dev-status"></td></tr><tr><th>Support status</th> <td id="component-support-status"></td></tr><tr><th>Discussion</th> <td id="component-forum-tag" class="manual"><a rel="nofollow" href="https://forum.image.sc/tag/fiji"><img alt="Image.sc forum" src="https://img.shields.io/badge/dynamic/json.svg?label=&url=https%3A%2F%2Fforum.image.sc%2Ftags%2Ffiji.json&query=%24.topic_list.tags.0.topic_count&colorB=brightgreen&suffix=%20topics&logo=data:image/png;base64,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"></a></td></tr><tr><td id="component-team" colspan=2> <details> <summary style="text-align: center"><span class="tooltip">Team<span class="tooltiptext" style="top: 80%; left: -75px; width: 180px">The group of people who take responsibility for the project.</span></span></summary> <table><tr><th><span class="tooltip">Founders<span class="tooltiptext" style="top: 80%; left: -10px; width: 180px">People who created the project. Does not imply any current participation or responsibility.</span></span></th><td id="component-team-founders"></td> </tr><tr><th><span class="tooltip">Leads<span class="tooltiptext" style="top: 80%; left: -10px; width: 180px">People responsible for making decisions about the project: timing of releases, inclusion of features, etc.</span></span></th><td id="component-team-leads"></td> </tr><tr><th><span class="tooltip">Developers<span class="tooltiptext" style="top: 80%; left: -10px; width: 180px">People responsible for adding new features or enhancements.</span></span></th><td id="component-team-developers"></td> </tr><tr><th><span class="tooltip">Debuggers<span class="tooltiptext" style="top: 80%; left: -10px; width: 180px">People responsible for fixing bugs.</span></span></th><td id="component-team-debuggers"></td> </tr><tr><th><span class="tooltip">Reviewers<span class="tooltiptext" style="top: 80%; left: -10px; width: 180px">People responsible for reviewing patch submissions.</span></span></th><td id="component-team-reviewers"></td> </tr><tr><th><span class="tooltip">Support<span class="tooltiptext" style="top: 80%; left: -10px; width: 180px">People responsible for responding to community questions and issue reports.</span></span></th><td id="component-team-support"></td> </tr><tr><th><span class="tooltip">Maintainers<span class="tooltiptext" style="top: 80%; left: -10px; width: 180px">People responsible for maintaining the project: e.g., merging patch submissions and cutting releases.</span></span></th><td id="component-team-maintainers"></td> </tr><tr><th><span class="tooltip">Contributors<span class="tooltiptext" style="top: 80%; left: -10px; width: 180px">People who contributed code to the project. Does not imply any current participation or responsibility.</span></span></th><td id="component-team-contributors"></td> </tr></table> </details> </td></tr></table> </div>  <div id="toc" class="toc menu dockable"> <div class="drag-handle"></div> <h3>Page contents</h3> <ul data-toc="#content" data-toc-headings="h1,h2,h3,h4,h5,h6"></ul> </div> </section>  <div class="container"> <header class="major special"> <a class="project-icon shadowed-box"><span class="tooltip"><img src="/media/icons/fiji.svg"><span class="tooltiptext" style="top: 80%; left: 25%; width: 20em">This page describes the Fiji distribution of ImageJ.</span></span></a> <h1>Fiji</h1> <span class="project-counterweight"> </span> </header> </div>   <section id="page" class="main style1"> <div class="container"> <div class="box alt"></div> <div id="content" class="page-content"> <p><a href="https://fiji.sc/">Fiji</a> is an image processing package—a “batteries-included” distribution of <a href="/software/imagej2">ImageJ2</a>, bundling a lot of plugins which facilitate scientific image analysis.</p> <ul> <li><strong>For users</strong> - Fiji is <a href="/software/fiji/downloads">easy to install</a> and has an automatic update function, bundles a <a href="/list-of-extensions">lot of plugins</a> and offers comprehensive <a href="/learn">documentation</a>.</li> <li><strong>For developers</strong> - Fiji is an open source project hosted in a <a href="/develop/git">Git</a> version control <a href="https://github.com/fiji/fiji/">repository</a>, with access to the source code of all internals, libraries and plugins, and eases the <a href="/develop">development</a> and <a href="/scripting">scripting</a> of plugins.</li> </ul> <h2 id="downloads">Downloads</h2> <div> <table> <tbody> <tr> <th> </th> <th>Operating system</th> <th>Download links</th> </tr> <tr> <th><img alt="Linux" src="/media/icons/linux.svg" width="24" height="24" /></th> <td>Linux (64-bit)</td> <td> <a style="text-decoration: underline;" href="https://downloads.imagej.net/fiji/latest/fiji-linux64.zip">imagej.net (USA)</a> | <a style="text-decoration: underline;" href="https://downloads.micron.ox.ac.uk/fiji_update/mirrors/fiji-latest/fiji-linux64.zip">micron.ox.ac.uk (Europe)</a> </td> </tr> <tr> <th><img alt="macOS" src="/media/icons/macos.png" width="24" height="24" /></th> <td>macOS (Apple silicon)</td> <td> <a style="text-decoration: underline;" href="https://downloads.imagej.net/fiji/future/fiji-future-macos-arm64.zip">imagej.net (USA)</a> </td> </tr> <tr> <th><img alt="macOS" src="/media/icons/macos.png" width="24" height="24" /></th> <td>macOS (Intel)</td> <td> <a style="text-decoration: underline;" href="https://downloads.imagej.net/fiji/latest/fiji-macosx.zip">imagej.net (USA)</a> | <a style="text-decoration: underline;" href="https://downloads.micron.ox.ac.uk/fiji_update/mirrors/fiji-latest/fiji-macosx.zip">micron.ox.ac.uk (Europe)</a> </td> </tr> <tr> <th><img alt="Windows" src="/media/icons/windows.svg" width="24" height="24" /></th> <td>Windows (64-bit)</td> <td> <a style="text-decoration: underline;" href="https://downloads.imagej.net/fiji/latest/fiji-win64.zip">imagej.net (USA)</a> | <a style="text-decoration: underline;" href="https://downloads.micron.ox.ac.uk/fiji_update/mirrors/fiji-latest/fiji-win64.zip">micron.ox.ac.uk (Europe)</a> </td> </tr> <tr> <th><img alt="Windows" src="/media/icons/windows.svg" width="24" height="24" /></th> <td>Windows (32-bit)</td> <td> <a style="text-decoration: underline;" href="https://downloads.imagej.net/fiji/latest/fiji-win32.zip">imagej.net (USA)</a> | <a style="text-decoration: underline;" href="https://downloads.micron.ox.ac.uk/fiji_update/mirrors/fiji-latest/fiji-win32.zip">micron.ox.ac.uk (Europe)</a> </td> </tr> <tr> <th><img alt="no-JRE" src="/media/icons/fiji.png" width="24" height="24" /></th> <td>No JRE</td> <td> <a style="text-decoration: underline;" href="https://downloads.imagej.net/fiji/latest/fiji-nojre.zip">imagej.net (USA)</a> | <a style="text-decoration: underline;" href="https://downloads.micron.ox.ac.uk/fiji_update/mirrors/fiji-latest/fiji-nojre.zip">micron.ox.ac.uk (Europe)</a> </td> </tr> </tbody> </table> </div> <p>See the <a href="/software/fiji/downloads">Fiji downloads</a> page for Life-Line versions, etc.</p> <h2 id="license">License</h2> <p>Fiji is released as <a href="/licensing/open-source">open source</a> under the <a href="/licensing/gpl">GNU General Public License</a>.</p> <p>Fiji builds on top of the <a href="/software/imagej2">ImageJ2</a> core, which is licensed under the permissive <a href="/licensing/bsd">BSD 2-Clause license</a>.</p> <p>Fiji also includes the original <a href="/software/imagej">ImageJ</a>, which is <a href="/licensing/public-domain">free of copyright</a>.</p> <p>Plugins and other components have <a href="https://github.com/fiji/fiji/blob/master/LICENSES">their own licenses</a>.</p> <p>See the <a href="/licensing">Licensing</a> page for details.</p> <h2 id="contributing">Contributing</h2> <p>Fiji is supported by several laboratories and institutions:</p> <ul> <li>The <a href="/orgs/loci">Eliceiri/LOCI</a> lab at <a href="https://wisc.edu/">UW-Madison</a>, home of <a href="/software/imagej2">ImageJ2</a>.</li> <li>The <a href="/people/fjug">Jug</a> lab at the <a href="/orgs/human-technopole">Human Technopole</a>.</li> <li>The <a href="/people/axtimwalde">Saalfeld</a> lab at <a href="/orgs/janelia">Janelia Research Campus</a>.</li> <li>The <a href="/people/tomancak">Tomancak</a> lab at <a href="/orgs/mpi-cbg">MPI-CBG</a> and the <a href="/orgs/csbd">CSBD</a>.</li> <li>Individuals at <a href="/people">many other institutions worldwide</a>.</li> </ul> <p>Fiji is an <a href="/licensing/open-source">open source</a> project, so everybody is welcome to contribute with plugins, patches, bug reports, tutorials, documentation, and artwork.</p> <p>If you’d like to share an idea or project, please <a href="/discuss">share them with the community</a>.</p> <h2 id="publication">Publication</h2> <p><span class="citation" data-citation-id="10.1038/nmeth.2019" data-citation-style="apa"><a href="https://doi.org/10.1038/nmeth.2019">doi:10.1038/nmeth.2019</a></span></p> </div> </div> </section>  <section id="footer"> <ul class="icons"> <li><a href="https://forum.image.sc/tag/imagej" class="icon alt"><img src="/media/icons/image-sc.png" width="24" style="vertical-align: middle; margin-top: -10px"><span class="label">Forum</span></a></li> <li><a href="https://twitter.com/hashtag/ImageJ" class="icon brands alt fa-twitter"><span class="label">Twitter</span></a></li> <li><a href="https://github.com/imagej" class="icon brands alt fa-github"><span class="label">GitHub</span></a></li> </ul> <ul class="copyright"> <li>Design: <a href="http://html5up.net">HTML5 UP</a></li> </ul> </section>  <nav role="navigation"> <div id="ham-toggle"> <input type="checkbox" /> <span></span>  <span></span>  <span></span>  <ul id="ham-menu"> <div class="menu"><h3>ImageJ Docs</h3> <ul> <li><a href="/downloads">Download</a></li> <li><details><summary>Learn</summary><ul> <li><details><summary><a href="/learn">ImageJ Basics</a></summary><ul> <li><a href="/tutorials">Tutorials</a></li> <li><a href="/learn/user-guides">User Guides</a></li> <li><a href="/learn/keyboard-shortcuts">Keyboard Shortcuts</a></li> <li><a href="/learn/tips-and-tricks">Tips and Tricks</a></li> <li><a href="/learn/troubleshooting">Troubleshooting</a></li> <li><a href="/learn/faq">Frequently Asked Questions</a></li> <li><details><summary><a href="/platforms">Supported Platforms</a></summary><ul> <li><a href="/platforms/windows">Windows</a></li> <li><a href="/platforms/macos">MacOS</a></li> <li><a href="/platforms/linux">Linux</a></li> <li><a href="/platforms/pi">Raspberry Pi</a></li> <li><a href="/platforms/android">Android</a></li> </ul></details></li>  <li><details><summary><a href="/formats">File Formats</a></summary><ul> <li><a href="/formats/bio-formats">Bio-Formats</a></li> <li><a href="/formats/video">Video formats</a></li> <li><a href="/formats/quicktime">QuickTime</a></li> <li><a href="/formats/tiff">TIFF</a></li> <li><a href="/formats/pdf">PDF</a></li> <li><a href="/formats/dicom">DICOM</a></li> <li><a href="/formats/lsm">Zeiss LSM</a></li> <li><a href="/formats/olympus">Olympus VSI</a></li> <li><a href="/formats/lurawave">Opera Flex</a></li> <li><a href="/formats/fib-sem">FIB-SEM</a></li> </ul></details></li>  </ul></details></li>  <li><details><summary><a href="/imaging">Scientific Imaging</a></summary><ul> <li><a href="/imaging/principles">Principles of Scientific Imaging</a></li> <li><a href="/imaging/annotating-images">Annotating Images</a></li> <li><a href="/imaging/colocalization-analysis">Colocalization</a></li> <li><a href="/imaging/color-image-processing">Color Image Processing</a></li> <li><a href="/imaging/deconvolution">Deconvolution</a></li> <li><a href="/imaging/image-intensity-processing">Image Intensity Processing</a></li> <li><a href="/imaging/particle-analysis">Particle Analysis</a></li> <li><a href="/imaging/registration">Registration</a></li> <li><a href="/imaging/segmentation">Segmentation</a></li> <li><a href="/imaging/stack-slice-manipulations">Stack-slice Manipulations</a></li> <li><a href="/imaging/t-functions">T-functions</a></li> <li><a href="/imaging/tracking">Tracking</a></li> <li><a href="/imaging/visualization">Visualization</a></li> <li><a href="/imaging/z-functions">Z-functions</a></li> </ul></details></li>  </ul></details></li>  <li><details><summary><a href="/plugins">Extend</a></summary><ul> <li><a href="/list-of-extensions">List of Extensions</a></li> <li><details><summary><a href="/update-sites">Update Sites</a></summary><ul> <li><a href="/list-of-update-sites">List of Update Sites</a></li> <li><a href="/update-sites/following">Following an Update Site</a></li> <li><a href="/update-sites/setup">Creating an Update Site</a></li> <li><a href="/update-sites/tos">Terms of Service</a></li> <li><a href="/update-sites/automatic-uploads">Automatic Upload</a></li> <li><a href="/update-sites/core-uploads">Uploading to Core Sites</a></li> <li><a href="/update-sites/faq">Update Sites FAQ</a></li> <li><a href="/update-sites/stats">Statistics</a></li> </ul></details></li>  <li><details><summary><a href="/scripting">Scripting</a></summary><ul> <li><a href="/scripting/basics">Scripting Basics</a></li> <li><a href="/scripting/script-editor">Script Editor</a></li> <li><a href="/scripting/parameters">Parameters</a></li> <li><a href="/scripting/user-input">User Input</a></li> <li><a href="/scripting/auto-imports">Auto Import</a></li> <li><a href="/scripting/templates">Templates</a></li> <li><a href="/scripting/batch">Batch Processing</a></li> <li><a href="/scripting/headless">Running Headlessly</a></li> <li><a href="/scripting/comparisons">Scripting Comparisons</a></li> <li><a href="/scripting/toolbox">Toolbox</a></li> <li><details><summary>Languages</summary><ul> <li><a href="/scripting/beanshell">BeanShell Scripting</a></li> <li><a href="/scripting/groovy">Groovy Scripting</a></li> <li><a href="/scripting/macro">ImageJ Macro</a></li> <li><a href="/scripting/javascript">JavaScript</a></li> <li><a href="/scripting/clojure">Lisp (Clojure)</a></li> <li><a href="/scripting/matlab">MATLAB</a></li> <li><a href="/scripting/jython">Python (Jython)</a></li> <li><a href="/scripting/python">Python (native)</a></li> <li><a href="/scripting/renjin">R (Renjin)</a></li> <li><a href="/scripting/jruby">Ruby (JRuby)</a></li> <li><a href="/scripting/scala">Scala Scripting</a></li> </ul></details></li>  </ul></details></li>  <li><details><summary><a href="/develop">Development</a></summary><ul> <li><a href="/develop/philosophy">Philosophy</a></li> <li><a href="/develop/architecture">Architecture</a></li> <li><a href="/develop/source">Source code</a></li> <li><a href="/develop/project-management">Project management</a></li> <li><a href="/develop/coding-style">Coding style</a></li> <li><a href="/develop/javadoc">Using Javadoc</a></li> <li><a href="/develop/debugging">Debugging</a></li> <li><a href="/develop/wish-list">Wish list</a></li> <li><details><summary>Tools</summary><ul> <li><a href="/develop/github">GitHub</a></li> <li><a href="/develop/maven">Maven</a></li> <li><a href="/develop/ci">CI/CD</a></li> <li><a href="/develop/dotfiles">Dotfiles</a></li> <li><details><summary><a href="/develop/ides">IDEs</a></summary><ul> <li><a href="/develop/eclipse">Eclipse</a></li> <li><a href="/develop/netbeans">NetBeans</a></li> <li><a href="/develop/intellij">IntelliJ IDEA</a></li> <li><a href="/develop/command-line">Command Line</a></li> </ul></details></li> </ul></details></li>  <li><details><summary>Guides</summary><ul> <li><a href="/develop/plugins">Writing plugins</a></li> <li><a href="/develop/improving-the-code">Contributing to a plugin</a></li> <li><a href="/develop/releasing">Development lifecycle</a></li> <li><a href="/develop/building-a-pom">Building a POM</a></li> <li><a href="/develop/debugging-exercises">Hands-on debugging</a></li> <li><a href="/develop/writing-ops">Adding new ops</a></li> <li><a href="/develop/formats">Adding new formats</a></li> <li><a href="/develop/native-libraries">Using native libraries</a></li> <li><a href="/develop/tips">Tips for developers</a></li> <li><a href="/develop/cpp-tips">Tips for C++ developers</a></li> <li><a href="/develop/ij1-plugins">ImageJ 1.x plugins</a></li> <li><a href="/develop/versioning">Versioning</a></li> <li><a href="/develop/logging">Logging</a></li> <li><a href="/develop/uber-jars">Uber-JARs</a></li> </ul></details></li>  <li><details><summary><a href="/develop/git">Git</a></summary><ul> <li><a href="/develop/git/eclipse">Git in Eclipse (EGit)</a></li> <li><a href="/develop/git/mini-howto">Git mini howto</a></li> <li><a href="/develop/git/workshop">Git workshop</a></li> <li><a href="/develop/git/conflicts">Git conflicts</a></li> <li><a href="/develop/git/topic-branches">Git topic branches</a></li> <li><a href="/develop/git/notes">Git notes</a></li> <li><a href="/develop/git/reflogs">Git reflogs</a></li> <li><a href="/develop/git/submodules">Git submodules</a></li> <li><a href="/develop/git/pinpoint-regressions">How to pinpoint regressions</a></li> <li><a href="/develop/git/publish-a-repository">How to publish a git repository</a></li> <li><a href="/develop/git/extract-a-subproject">How to extract a subproject</a></li> </ul></details></li>  </ul></details></li>  </ul></details></li>  <li><details><summary><a href="/contribute">Contribute</a></summary><ul> <li><a href="/contribute/citing">Citing</a></li> <li><a href="/people">Contributors</a></li> <li><a href="/orgs">Organizations</a></li> <li><a href="/contribute/governance">Governance</a></li> <li><a href="/contribute/funding">Funding</a></li> <li><a href="/contribute/fiji">Contributing to Fiji</a></li> <li><details><summary><a href="/licensing">Licensing</a></summary><ul> <li><details><summary><a href="/licensing/open-source">Open Source</a></summary><ul> <li><a href="/licensing/apache">Apache</a></li> <li><a href="/licensing/bsd">BSD</a></li> <li><a href="/licensing/epl">EPL</a></li> <li><a href="/licensing/gpl">GPL</a></li> <li><a href="/licensing/lgpl">LGPL</a></li> <li><a href="/licensing/mit">MIT</a></li> <li><a href="/licensing/public-domain">Public domain</a></li> <li><a href="/licensing/big">BIG</a></li> </ul></details></li>  <li><a href="/licensing/closed-source">Proprietary</a></li> </ul></details></li>  <li><details><summary><a href="/editing">Editing the Wiki</a></summary><ul> <li><a href="/editing/advanced">Advanced Editing</a></li> <li><a href="/editing/buttons">Buttons</a></li> <li><a href="/editing/citations">Citations</a></li> <li><a href="/editing/code">Source Code</a></li> <li><a href="/editing/debugging">Debugging</a></li> <li><a href="/editing/headers">Headers</a></li> <li><a href="/editing/icons">Icons</a></li> <li><a href="/editing/images">Images</a></li> <li><a href="/editing/keys">Keyboard Shortcuts</a></li> <li><a href="/editing/linking">Linking</a></li> <li><a href="/editing/math">Math Expressions</a></li> <li><a href="/editing/menu-paths">Menu Paths</a></li> <li><a href="/editing/navigation">Navigation</a></li> <li><a href="/editing/notices">Notices</a></li> <li><a href="/editing/people">People</a></li> <li><a href="/editing/pitfalls">Pitfalls</a></li> <li><a href="/editing/quizzes">Quizzes</a></li> <li><a href="/editing/statbox">Statbox</a></li> <li><a href="/editing/symbols">Symbols</a></li> <li><a href="/editing/tables">Tables</a></li> <li><a href="/editing/tooltips">Tooltips</a></li> <li><a href="/editing/videos">Videos</a></li> <li><a href="/editing/whitespace">Whitespace</a></li> </ul></details></li>  </ul></details></li>  <li><details><summary><a href="/discuss">Discuss</a></summary><ul> <li><a href="/discuss/bugs">Reporting Issues</a></li> <li><a href="/discuss/mailing-lists">Mailing Lists</a></li> <li><a href="/discuss/chat">Chat</a></li> </ul></details></li>  <li><details open><summary>Explore</summary><ul> <li><a href="/news">News</a></li> <li><details><summary><a href="/events">Events</a></summary><ul> <li><a href="/events/presentations">Presentations</a></li> <li><a href="/events/conferences">Conferences</a></li> <li><a href="/events/hackathons">Hackathons</a></li> <li><a href="/events">More...</a></li> </ul></details></li>  <li><details><summary><a href="/libs">Libraries</a></summary><ul> <li><a href="/libs/imagej-ops">ImageJ Ops</a></li> <li><a href="/libs/imagej-common">ImageJ Common</a></li> <li><a href="/libs/imagej-legacy">ImageJ Legacy</a></li> <li><a href="/libs/scijava">SciJava</a></li> <li><a href="/libs/scifio">SCIFIO</a></li> <li><details><summary><a href="/libs/imglib2">ImgLib2</a></summary><ul> <li><a href="/libs/imglib2/getting-started">Getting Started</a></li> <li><a href="/libs/imglib2/accessors">Accessors</a></li> <li><a href="/libs/imglib2/accessibles">Accessibles</a></li> <li><a href="/libs/imglib2/examples">Examples</a></li> <li><a href="/libs/imglib2/workshop-introductory">Introductory Workshop</a></li> <li><a href="/libs/imglib2/workshop-advanced">Advanced Workshop</a></li> <li><a href="/libs/imglib2/matlab">ImgLib2 images in MATLAB</a></li> <li><a href="/libs/imglib2/benchmarks">Benchmarks</a></li> <li><a href="/libs/imglib2/faq">FAQ</a></li> <li><a href="/libs/imglib2/developing">Developing ImgLib2</a></li> <li><a href="/libs/imglib2/discussion">ImgLib2 Discussion</a></li> </ul></details></li>  <li><a href="/libs">More...</a></li> </ul></details></li>  <li><details open><summary><a href="/software">Software</a></summary><ul> <li><a href="/software/nih-image">NIH Image</a></li> <li><a href="/software/imagej">ImageJ</a></li> <li><a href="/software/imagej2">ImageJ2</a></li> <li><a class="current-page">Fiji</a></li> <li><a href="/software">More...</a></li> </ul></details></li>  </ul></details></li>  </ul> </div> </ul> </div> </nav> <div id="dock-overlay-left" class="dock-overlay" data-dock-target="left-column"></div> <div id="dock-overlay-right" class="dock-overlay" data-dock-target="right-column"></div>  <div id="search-results"> <div id="search-hits"></div> <div id="pagination"></div> </div>   <script src="/assets/js/jquery.min.js"></script> <script src="/assets/js/jquery.scrolly.min.js"></script> <script src="/assets/js/browser.min.js"></script> <script src="/assets/js/breakpoints.min.js"></script> <script src="/assets/js/util.js"></script> <script src="/assets/js/jquery.toc.js"></script> <script src="/assets/js/lightbox.min.js"></script>   <script src="/assets/js/main.js"></script> <script src="/assets/js/dock.js"></script> <script src="/assets/js/code.js"></script>  <script src="https://cdn.jsdelivr.net/npm/anchor-js/anchor.min.js"></script> <script>anchors.add('#page h1, #page h2, #page h3, #page h4, #page h5, #page h6');</script>  <script src="https://cdn.jsdelivr.net/npm/citation-js@0.4.0-9"></script> <script src="/assets/js/cite.js"></script>  <script src="https://cdn.jsdelivr.net/npm/algoliasearch@4.13.0/dist/algoliasearch-lite.umd.js"></script> <script src="https://cdn.jsdelivr.net/npm/instantsearch.js@4.40.3/dist/instantsearch.production.min.js"></script> <script src="/assets/js/search.js"></script> <script src="/assets/js/search-tweaks.js"></script> </body> </html>

CINXE.COM

Fiji