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GitHub - jhuapl-boss/intern: Python SDK for interacting with the BossDB REST API
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class="flex-1"> <button aria-label="Toggle navigation" aria-expanded="false" type="button" data-view-component="true" class="js-details-target js-nav-padding-recalculate js-header-menu-toggle Button--link Button--medium Button d-lg-none color-fg-inherit p-1"> <span class="Button-content"> <span class="Button-label"><div class="HeaderMenu-toggle-bar rounded my-1"></div> <div class="HeaderMenu-toggle-bar rounded my-1"></div> <div class="HeaderMenu-toggle-bar rounded my-1"></div></span> </span> </button> </div> <a class="mr-lg-3 color-fg-inherit flex-order-2 js-prevent-focus-on-mobile-nav" href="/" aria-label="Homepage" data-analytics-event="{"category":"Marketing nav","action":"click to go to homepage","label":"ref_page:Marketing;ref_cta:Logomark;ref_loc:Header"}"> <svg height="32" aria-hidden="true" viewBox="0 0 24 24" version="1.1" width="32" data-view-component="true" class="octicon octicon-mark-github"> <path d="M12.5.75C6.146.75 1 5.896 1 12.25c0 5.089 3.292 9.387 7.863 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js-header-menu-item"> <button type="button" class="HeaderMenu-link border-0 width-full width-lg-auto px-0 px-lg-2 py-lg-2 no-wrap d-flex flex-items-center flex-justify-between js-details-target" aria-expanded="false"> Product <svg opacity="0.5" aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-chevron-down HeaderMenu-icon ml-1"> <path d="M12.78 5.22a.749.749 0 0 1 0 1.06l-4.25 4.25a.749.749 0 0 1-1.06 0L3.22 6.28a.749.749 0 1 1 1.06-1.06L8 8.939l3.72-3.719a.749.749 0 0 1 1.06 0Z"></path> </svg> </button> <div class="HeaderMenu-dropdown dropdown-menu rounded m-0 p-0 pt-2 pt-lg-4 position-relative position-lg-absolute left-0 left-lg-n3 pb-2 pb-lg-4 d-lg-flex flex-wrap dropdown-menu-wide"> <div class="HeaderMenu-column px-lg-4 border-lg-right mb-4 mb-lg-0 pr-lg-7"> <div class="border-bottom pb-3 pb-lg-0 border-lg-bottom-0"> <ul class="list-style-none f5" > <li> <a class="HeaderMenu-dropdown-link d-block no-underline position-relative py-2 Link--secondary d-flex flex-items-center Link--has-description pb-lg-3" data-analytics-event="{"location":"navbar","action":"github_copilot","context":"product","tag":"link","label":"github_copilot_link_product_navbar"}" href="https://github.com/features/copilot"> <svg aria-hidden="true" height="24" viewBox="0 0 24 24" version="1.1" width="24" data-view-component="true" class="octicon octicon-copilot color-fg-subtle mr-3"> <path d="M23.922 16.992c-.861 1.495-5.859 5.023-11.922 5.023-6.063 0-11.061-3.528-11.922-5.023A.641.641 0 0 1 0 16.736v-2.869a.841.841 0 0 1 .053-.22c.372-.935 1.347-2.292 2.605-2.656.167-.429.414-1.055.644-1.517a10.195 10.195 0 0 1-.052-1.086c0-1.331.282-2.499 1.132-3.368.397-.406.89-.717 1.474-.952 1.399-1.136 3.392-2.093 6.122-2.093 2.731 0 4.767.957 6.166 2.093.584.235 1.077.546 1.474.952.85.869 1.132 2.037 1.132 3.368 0 .368-.014.733-.052 1.086.23.462.477 1.088.644 1.517 1.258.364 2.233 1.721 2.605 2.656a.832.832 0 0 1 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0v-2a1 1 0 0 1 1-1Zm-5 0a1 1 0 0 1 1 1v2a1 1 0 0 1-2 0v-2a1 1 0 0 1 1-1Z"></path> </svg> <div> <div class="color-fg-default h4">GitHub Copilot</div> Write better code with AI </div> </a></li> <li> <a class="HeaderMenu-dropdown-link d-block no-underline position-relative py-2 Link--secondary d-flex flex-items-center Link--has-description pb-lg-3" data-analytics-event="{"location":"navbar","action":"security","context":"product","tag":"link","label":"security_link_product_navbar"}" href="https://github.com/features/security"> <svg aria-hidden="true" height="24" viewBox="0 0 24 24" version="1.1" width="24" data-view-component="true" class="octicon octicon-shield-check color-fg-subtle mr-3"> <path d="M16.53 9.78a.75.75 0 0 0-1.06-1.06L11 13.19l-1.97-1.97a.75.75 0 0 0-1.06 1.06l2.5 2.5a.75.75 0 0 0 1.06 0l5-5Z"></path><path d="m12.54.637 8.25 2.675A1.75 1.75 0 0 1 22 4.976V10c0 6.19-3.771 10.704-9.401 12.83a1.704 1.704 0 0 1-1.198 0C5.77 20.705 2 16.19 2 10V4.976c0-.758.489-1.43 1.21-1.664L11.46.637a1.748 1.748 0 0 1 1.08 0Zm-.617 1.426-8.25 2.676a.249.249 0 0 0-.173.237V10c0 5.46 3.28 9.483 8.43 11.426a.199.199 0 0 0 .14 0C17.22 19.483 20.5 15.461 20.5 10V4.976a.25.25 0 0 0-.173-.237l-8.25-2.676a.253.253 0 0 0-.154 0Z"></path> </svg> <div> <div class="color-fg-default h4">Security</div> Find and fix vulnerabilities </div> </a></li> <li> <a class="HeaderMenu-dropdown-link d-block no-underline position-relative py-2 Link--secondary d-flex flex-items-center Link--has-description pb-lg-3" data-analytics-event="{"location":"navbar","action":"actions","context":"product","tag":"link","label":"actions_link_product_navbar"}" href="https://github.com/features/actions"> <svg aria-hidden="true" height="24" viewBox="0 0 24 24" version="1.1" width="24" data-view-component="true" class="octicon octicon-workflow color-fg-subtle mr-3"> <path d="M1 3a2 2 0 0 1 2-2h6.5a2 2 0 0 1 2 2v6.5a2 2 0 0 1-2 2H7v4.063C7 16.355 7.644 17 8.438 17H12.5v-2.5a2 2 0 0 1 2-2H21a2 2 0 0 1 2 2V21a2 2 0 0 1-2 2h-6.5a2 2 0 0 1-2-2v-2.5H8.437A2.939 2.939 0 0 1 5.5 15.562V11.5H3a2 2 0 0 1-2-2Zm2-.5a.5.5 0 0 0-.5.5v6.5a.5.5 0 0 0 .5.5h6.5a.5.5 0 0 0 .5-.5V3a.5.5 0 0 0-.5-.5ZM14.5 14a.5.5 0 0 0-.5.5V21a.5.5 0 0 0 .5.5H21a.5.5 0 0 0 .5-.5v-6.5a.5.5 0 0 0-.5-.5Z"></path> </svg> <div> <div class="color-fg-default h4">Actions</div> Automate any workflow </div> </a></li> <li> <a class="HeaderMenu-dropdown-link d-block no-underline position-relative py-2 Link--secondary d-flex flex-items-center Link--has-description pb-lg-3" data-analytics-event="{"location":"navbar","action":"codespaces","context":"product","tag":"link","label":"codespaces_link_product_navbar"}" href="https://github.com/features/codespaces"> <svg aria-hidden="true" height="24" viewBox="0 0 24 24" version="1.1" width="24" data-view-component="true" class="octicon octicon-codespaces color-fg-subtle mr-3"> <path d="M3.5 3.75C3.5 2.784 4.284 2 5.25 2h13.5c.966 0 1.75.784 1.75 1.75v7.5A1.75 1.75 0 0 1 18.75 13H5.25a1.75 1.75 0 0 1-1.75-1.75Zm-2 12c0-.966.784-1.75 1.75-1.75h17.5c.966 0 1.75.784 1.75 1.75v4a1.75 1.75 0 0 1-1.75 1.75H3.25a1.75 1.75 0 0 1-1.75-1.75ZM5.25 3.5a.25.25 0 0 0-.25.25v7.5c0 .138.112.25.25.25h13.5a.25.25 0 0 0 .25-.25v-7.5a.25.25 0 0 0-.25-.25Zm-2 12a.25.25 0 0 0-.25.25v4c0 .138.112.25.25.25h17.5a.25.25 0 0 0 .25-.25v-4a.25.25 0 0 0-.25-.25Z"></path><path d="M10 17.75a.75.75 0 0 1 .75-.75h6.5a.75.75 0 0 1 0 1.5h-6.5a.75.75 0 0 1-.75-.75Zm-4 0a.75.75 0 0 1 .75-.75h.5a.75.75 0 0 1 0 1.5h-.5a.75.75 0 0 1-.75-.75Z"></path> </svg> <div> <div class="color-fg-default h4">Codespaces</div> Instant dev environments </div> </a></li> <li> <a class="HeaderMenu-dropdown-link d-block no-underline position-relative py-2 Link--secondary d-flex flex-items-center Link--has-description pb-lg-3" data-analytics-event="{"location":"navbar","action":"issues","context":"product","tag":"link","label":"issues_link_product_navbar"}" href="https://github.com/features/issues"> <svg aria-hidden="true" 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6.74a.75.75 0 0 1-.04 1.06l-2.908 2.7 2.908 2.7a.75.75 0 1 1-1.02 1.1l-3.5-3.25a.75.75 0 0 1 0-1.1l3.5-3.25a.75.75 0 0 1 1.06.04Zm3.44 1.06a.75.75 0 1 1 1.02-1.1l3.5 3.25a.75.75 0 0 1 0 1.1l-3.5 3.25a.75.75 0 1 1-1.02-1.1l2.908-2.7-2.908-2.7Z"></path><path d="M1.5 4.25c0-.966.784-1.75 1.75-1.75h17.5c.966 0 1.75.784 1.75 1.75v12.5a1.75 1.75 0 0 1-1.75 1.75h-9.69l-3.573 3.573A1.458 1.458 0 0 1 5 21.043V18.5H3.25a1.75 1.75 0 0 1-1.75-1.75ZM3.25 4a.25.25 0 0 0-.25.25v12.5c0 .138.112.25.25.25h2.5a.75.75 0 0 1 .75.75v3.19l3.72-3.72a.749.749 0 0 1 .53-.22h10a.25.25 0 0 0 .25-.25V4.25a.25.25 0 0 0-.25-.25Z"></path> </svg> <div> <div class="color-fg-default h4">Code Review</div> Manage code changes </div> </a></li> <li> <a class="HeaderMenu-dropdown-link d-block no-underline position-relative py-2 Link--secondary d-flex flex-items-center Link--has-description pb-lg-3" 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2h16.5c.966 0 1.75.784 1.75 1.75v16.5A1.75 1.75 0 0 1 20.25 22H3.75A1.75 1.75 0 0 1 2 20.25Zm1.75-.25a.25.25 0 0 0-.25.25v16.5c0 .138.112.25.25.25h16.5a.25.25 0 0 0 .25-.25V3.75a.25.25 0 0 0-.25-.25Z"></path> </svg> <div> <div class="color-fg-default h4">Code Search</div> Find more, search less </div> </a></li> </ul> </div> </div> <div class="HeaderMenu-column px-lg-4"> <div class="border-bottom pb-3 pb-lg-0 border-lg-bottom-0 border-bottom-0"> <span class="d-block h4 color-fg-default my-1" id="product-explore-heading">Explore</span> <ul class="list-style-none f5" aria-labelledby="product-explore-heading"> <li> <a class="HeaderMenu-dropdown-link d-block no-underline position-relative py-2 Link--secondary" data-analytics-event="{"location":"navbar","action":"all_features","context":"product","tag":"link","label":"all_features_link_product_navbar"}" href="https://github.com/features"> All features </a></li> <li> <a class="HeaderMenu-dropdown-link d-block no-underline position-relative 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class="octicon octicon-device-desktop"> <path d="M14.25 1c.966 0 1.75.784 1.75 1.75v7.5A1.75 1.75 0 0 1 14.25 12h-3.727c.099 1.041.52 1.872 1.292 2.757A.752.752 0 0 1 11.25 16h-6.5a.75.75 0 0 1-.565-1.243c.772-.885 1.192-1.716 1.292-2.757H1.75A1.75 1.75 0 0 1 0 10.25v-7.5C0 1.784.784 1 1.75 1ZM1.75 2.5a.25.25 0 0 0-.25.25v7.5c0 .138.112.25.25.25h12.5a.25.25 0 0 0 .25-.25v-7.5a.25.25 0 0 0-.25-.25ZM9.018 12H6.982a5.72 5.72 0 0 1-.765 2.5h3.566a5.72 5.72 0 0 1-.765-2.5Z"></path> </svg> </template> <div class="position-relative"> <ul role="listbox" class="ActionListWrap QueryBuilder-ListWrap" aria-label="Suggestions" data-action=" combobox-commit:query-builder#comboboxCommit mousedown:query-builder#resultsMousedown " data-target="query-builder.resultsList" data-persist-list=false id="query-builder-test-results" ></ul> </div> <div class="FormControl-inlineValidation" id="validation-3a4f637d-8020-4407-ad72-af127553e12e" hidden="hidden"> <span class="FormControl-inlineValidation--visual"> 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hidden data-target="qbsearch-input.darkBackdrop"></div> <div class="color-fg-default"> <dialog-helper> <dialog data-target="qbsearch-input.feedbackDialog" data-action="close:qbsearch-input#handleDialogClose cancel:qbsearch-input#handleDialogClose" id="feedback-dialog" aria-modal="true" aria-labelledby="feedback-dialog-title" aria-describedby="feedback-dialog-description" data-view-component="true" class="Overlay Overlay-whenNarrow Overlay--size-medium Overlay--motion-scaleFade Overlay--disableScroll"> <div data-view-component="true" class="Overlay-header"> <div class="Overlay-headerContentWrap"> <div class="Overlay-titleWrap"> <h1 class="Overlay-title " id="feedback-dialog-title"> Provide feedback </h1> </div> <div class="Overlay-actionWrap"> <button data-close-dialog-id="feedback-dialog" aria-label="Close" type="button" data-view-component="true" class="close-button Overlay-closeButton"><svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" 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id="feedback"></textarea> <input name="include_email" id="include_email" aria-label="Include my email address so I can be contacted" class="form-control mr-2" type="checkbox"> <label for="include_email" style="font-weight: normal">Include my email address so I can be contacted</label> </form></div> </scrollable-region> <div data-view-component="true" class="Overlay-footer Overlay-footer--alignEnd"> <button data-close-dialog-id="feedback-dialog" type="button" data-view-component="true" class="btn"> Cancel </button> <button form="code-search-feedback-form" data-action="click:qbsearch-input#submitFeedback" type="submit" data-view-component="true" class="btn-primary btn"> Submit feedback </button> </div> </dialog></dialog-helper> <custom-scopes data-target="qbsearch-input.customScopesManager"> <dialog-helper> <dialog data-target="custom-scopes.customScopesModalDialog" data-action="close:qbsearch-input#handleDialogClose cancel:qbsearch-input#handleDialogClose" id="custom-scopes-dialog" aria-modal="true" aria-labelledby="custom-scopes-dialog-title" aria-describedby="custom-scopes-dialog-description" data-view-component="true" class="Overlay Overlay-whenNarrow Overlay--size-medium Overlay--motion-scaleFade Overlay--disableScroll"> <div data-view-component="true" class="Overlay-header Overlay-header--divided"> <div class="Overlay-headerContentWrap"> <div class="Overlay-titleWrap"> <h1 class="Overlay-title " id="custom-scopes-dialog-title"> Saved searches </h1> <h2 id="custom-scopes-dialog-description" class="Overlay-description">Use saved searches to filter your results more quickly</h2> </div> <div class="Overlay-actionWrap"> <button data-close-dialog-id="custom-scopes-dialog" aria-label="Close" type="button" data-view-component="true" class="close-button Overlay-closeButton"><svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-x"> <path d="M3.72 3.72a.75.75 0 0 1 1.06 0L8 6.94l3.22-3.22a.749.749 0 0 1 1.275.326.749.749 0 0 1-.215.734L9.06 8l3.22 3.22a.749.749 0 0 1-.326 1.275.749.749 0 0 1-.734-.215L8 9.06l-3.22 3.22a.751.751 0 0 1-1.042-.018.751.751 0 0 1-.018-1.042L6.94 8 3.72 4.78a.75.75 0 0 1 0-1.06Z"></path> </svg></button> </div> </div> </div> <scrollable-region data-labelled-by="custom-scopes-dialog-title"> <div data-view-component="true" class="Overlay-body"> <div data-target="custom-scopes.customScopesModalDialogFlash"></div> <div hidden class="create-custom-scope-form" data-target="custom-scopes.createCustomScopeForm"> <!-- '"` --><!-- </textarea></xmp> --></option></form><form id="custom-scopes-dialog-form" data-turbo="false" action="/search/custom_scopes" accept-charset="UTF-8" method="post"><input type="hidden" data-csrf="true" name="authenticity_token" value="y2Q6Fy5n5pAMNFEFTVahTuAHw/PUdBX9ijA8f9L0hiRNGbIyhb6Eo0fZHSoZs24G637omtJb+JeCzP5n/gzQhA==" /> <div data-target="custom-scopes.customScopesModalDialogFlash"></div> <input type="hidden" 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dir=\"auto\"\u003eintern\u003c/h1\u003e\u003ca id=\"user-content-intern\" class=\"anchor\" aria-label=\"Permalink: intern\" href=\"#intern\"\u003e\u003csvg class=\"octicon octicon-link\" viewBox=\"0 0 16 16\" version=\"1.1\" width=\"16\" height=\"16\" aria-hidden=\"true\"\u003e\u003cpath d=\"m7.775 3.275 1.25-1.25a3.5 3.5 0 1 1 4.95 4.95l-2.5 2.5a3.5 3.5 0 0 1-4.95 0 .751.751 0 0 1 .018-1.042.751.751 0 0 1 1.042-.018 1.998 1.998 0 0 0 2.83 0l2.5-2.5a2.002 2.002 0 0 0-2.83-2.83l-1.25 1.25a.751.751 0 0 1-1.042-.018.751.751 0 0 1-.018-1.042Zm-4.69 9.64a1.998 1.998 0 0 0 2.83 0l1.25-1.25a.751.751 0 0 1 1.042.018.751.751 0 0 1 .018 1.042l-1.25 1.25a3.5 3.5 0 1 1-4.95-4.95l2.5-2.5a3.5 3.5 0 0 1 4.95 0 .751.751 0 0 1-.018 1.042.751.751 0 0 1-1.042.018 1.998 1.998 0 0 0-2.83 0l-2.5 2.5a1.998 1.998 0 0 0 0 2.83Z\"\u003e\u003c/path\u003e\u003c/svg\u003e\u003c/a\u003e\u003c/div\u003e\n\u003cp dir=\"auto\"\u003e\u003ca href=\"https://pypi.org/project/intern/\" rel=\"nofollow\"\u003e\u003cimg src=\"https://camo.githubusercontent.com/705dcdabe7336917a5b57636fbbefd12bfc5e75a2e85670277352a3f524bb782/68747470733a2f2f696d672e736869656c64732e696f2f707970692f762f696e7465726e3f7374796c653d666f722d7468652d6261646765\" alt=\"PyPI version\" data-canonical-src=\"https://img.shields.io/pypi/v/intern?style=for-the-badge\" style=\"max-width: 100%;\"\u003e\u003c/a\u003e\n\u003ca href=\"https://github.com/jhuapl-boss/intern/actions?query=workflow%3A%22Test+Python+Package%22\"\u003e\u003cimg src=\"https://camo.githubusercontent.com/77f66d3bbb50e9970cc0bd5a8261d3ad359db4b07ea24b314f01a44cfa88a3a9/68747470733a2f2f696d672e736869656c64732e696f2f6769746875622f616374696f6e732f776f726b666c6f772f7374617475732f6a687561706c2d626f73732f696e7465726e2f74657374732e796d6c3f7374796c653d666f722d7468652d6261646765\" alt=\"Python 3.6/3.7 Tests\" data-canonical-src=\"https://img.shields.io/github/actions/workflow/status/jhuapl-boss/intern/tests.yml?style=for-the-badge\" style=\"max-width: 100%;\"\u003e\u003c/a\u003e\u003c/p\u003e\n\u003cp dir=\"auto\"\u003e\u003cstrong\u003eintern\u003c/strong\u003e (Integrated Toolkit for Extensible and Reproducible Neuroscience) is a Python 3 module that enables big-data neuroscience. Currently, it provides an interface to common big-data neuroimaging databases such as \u003ca href=\"https://bossdb.org\" rel=\"nofollow\"\u003eBossDB\u003c/a\u003e, CloudVolume, DVID, and other standard formats.\u003c/p\u003e\n\u003cdiv class=\"markdown-heading\" dir=\"auto\"\u003e\u003ch2 tabindex=\"-1\" class=\"heading-element\" dir=\"auto\"\u003eGetting Started\u003c/h2\u003e\u003ca id=\"user-content-getting-started\" class=\"anchor\" aria-label=\"Permalink: Getting Started\" href=\"#getting-started\"\u003e\u003csvg class=\"octicon octicon-link\" viewBox=\"0 0 16 16\" version=\"1.1\" width=\"16\" height=\"16\" aria-hidden=\"true\"\u003e\u003cpath d=\"m7.775 3.275 1.25-1.25a3.5 3.5 0 1 1 4.95 4.95l-2.5 2.5a3.5 3.5 0 0 1-4.95 0 .751.751 0 0 1 .018-1.042.751.751 0 0 1 1.042-.018 1.998 1.998 0 0 0 2.83 0l2.5-2.5a2.002 2.002 0 0 0-2.83-2.83l-1.25 1.25a.751.751 0 0 1-1.042-.018.751.751 0 0 1-.018-1.042Zm-4.69 9.64a1.998 1.998 0 0 0 2.83 0l1.25-1.25a.751.751 0 0 1 1.042.018.751.751 0 0 1 .018 1.042l-1.25 1.25a3.5 3.5 0 1 1-4.95-4.95l2.5-2.5a3.5 3.5 0 0 1 4.95 0 .751.751 0 0 1-.018 1.042.751.751 0 0 1-1.042.018 1.998 1.998 0 0 0-2.83 0l-2.5 2.5a1.998 1.998 0 0 0 0 2.83Z\"\u003e\u003c/path\u003e\u003c/svg\u003e\u003c/a\u003e\u003c/div\u003e\n\u003cp dir=\"auto\"\u003eTo quickly get started with intern, check out the wiki: \u003ca href=\"https://github.com/jhuapl-boss/intern/wiki\"\u003ehttps://github.com/jhuapl-boss/intern/wiki\u003c/a\u003e\u003c/p\u003e\n\u003cdiv class=\"markdown-heading\" dir=\"auto\"\u003e\u003ch2 tabindex=\"-1\" class=\"heading-element\" dir=\"auto\"\u003eDocumentation\u003c/h2\u003e\u003ca id=\"user-content-documentation\" class=\"anchor\" aria-label=\"Permalink: Documentation\" href=\"#documentation\"\u003e\u003csvg class=\"octicon octicon-link\" viewBox=\"0 0 16 16\" version=\"1.1\" width=\"16\" height=\"16\" aria-hidden=\"true\"\u003e\u003cpath d=\"m7.775 3.275 1.25-1.25a3.5 3.5 0 1 1 4.95 4.95l-2.5 2.5a3.5 3.5 0 0 1-4.95 0 .751.751 0 0 1 .018-1.042.751.751 0 0 1 1.042-.018 1.998 1.998 0 0 0 2.83 0l2.5-2.5a2.002 2.002 0 0 0-2.83-2.83l-1.25 1.25a.751.751 0 0 1-1.042-.018.751.751 0 0 1-.018-1.042Zm-4.69 9.64a1.998 1.998 0 0 0 2.83 0l1.25-1.25a.751.751 0 0 1 1.042.018.751.751 0 0 1 .018 1.042l-1.25 1.25a3.5 3.5 0 1 1-4.95-4.95l2.5-2.5a3.5 3.5 0 0 1 4.95 0 .751.751 0 0 1-.018 1.042.751.751 0 0 1-1.042.018 1.998 1.998 0 0 0-2.83 0l-2.5 2.5a1.998 1.998 0 0 0 0 2.83Z\"\u003e\u003c/path\u003e\u003c/svg\u003e\u003c/a\u003e\u003c/div\u003e\n\u003cp dir=\"auto\"\u003eFull detailed documentation can be found here: \u003ca href=\"https://jhuapl-boss.github.io/intern/\" rel=\"nofollow\"\u003ehttps://jhuapl-boss.github.io/intern/\u003c/a\u003e\u003c/p\u003e\n\u003cdiv class=\"markdown-heading\" dir=\"auto\"\u003e\u003ch2 tabindex=\"-1\" class=\"heading-element\" dir=\"auto\"\u003eInstallation\u003c/h2\u003e\u003ca id=\"user-content-installation\" class=\"anchor\" aria-label=\"Permalink: Installation\" href=\"#installation\"\u003e\u003csvg class=\"octicon octicon-link\" viewBox=\"0 0 16 16\" version=\"1.1\" width=\"16\" height=\"16\" aria-hidden=\"true\"\u003e\u003cpath d=\"m7.775 3.275 1.25-1.25a3.5 3.5 0 1 1 4.95 4.95l-2.5 2.5a3.5 3.5 0 0 1-4.95 0 .751.751 0 0 1 .018-1.042.751.751 0 0 1 1.042-.018 1.998 1.998 0 0 0 2.83 0l2.5-2.5a2.002 2.002 0 0 0-2.83-2.83l-1.25 1.25a.751.751 0 0 1-1.042-.018.751.751 0 0 1-.018-1.042Zm-4.69 9.64a1.998 1.998 0 0 0 2.83 0l1.25-1.25a.751.751 0 0 1 1.042.018.751.751 0 0 1 .018 1.042l-1.25 1.25a3.5 3.5 0 1 1-4.95-4.95l2.5-2.5a3.5 3.5 0 0 1 4.95 0 .751.751 0 0 1-.018 1.042.751.751 0 0 1-1.042.018 1.998 1.998 0 0 0-2.83 0l-2.5 2.5a1.998 1.998 0 0 0 0 2.83Z\"\u003e\u003c/path\u003e\u003c/svg\u003e\u003c/a\u003e\u003c/div\u003e\n\u003cul dir=\"auto\"\u003e\n\u003cli\u003e\n\u003cp dir=\"auto\"\u003eIt's always a good idea to use virtualenv to isolate your work from your system Python installation:\u003c/p\u003e\n\u003c/li\u003e\n\u003cli\u003e\n\u003cp dir=\"auto\"\u003eUsing \u003ca href=\"https://virtualenv.pypa.io/en/stable/\" rel=\"nofollow\"\u003evirtualenv\u003c/a\u003e:\u003c/p\u003e\n\u003c/li\u003e\n\u003c/ul\u003e\n\u003cdiv class=\"highlight highlight-source-shell notranslate position-relative overflow-auto\" dir=\"auto\" data-snippet-clipboard-copy-content=\"virtualenv intern\n. intern/bin/activate\"\u003e\u003cpre\u003evirtualenv intern\n\u003cspan class=\"pl-c1\"\u003e.\u003c/span\u003e intern/bin/activate\u003c/pre\u003e\u003c/div\u003e\n\u003cul dir=\"auto\"\u003e\n\u003cli\u003eUsing \u003ca href=\"https://virtualenvwrapper.readthedocs.io/en/latest/\" rel=\"nofollow\"\u003evirtualenvwrapper\u003c/a\u003e:\u003c/li\u003e\n\u003c/ul\u003e\n\u003cdiv class=\"highlight highlight-source-shell notranslate position-relative overflow-auto\" dir=\"auto\" data-snippet-clipboard-copy-content=\"mkvirtualenv intern\"\u003e\u003cpre\u003emkvirtualenv intern\u003c/pre\u003e\u003c/div\u003e\n\u003cul dir=\"auto\"\u003e\n\u003cli\u003e(Preferred) Install via pypi\u003c/li\u003e\n\u003c/ul\u003e\n\u003cdiv class=\"highlight highlight-source-shell notranslate position-relative overflow-auto\" dir=\"auto\" data-snippet-clipboard-copy-content=\"pip install intern\"\u003e\u003cpre\u003epip install intern\u003c/pre\u003e\u003c/div\u003e\n\u003cul dir=\"auto\"\u003e\n\u003cli\u003eInstall via git\u003c/li\u003e\n\u003c/ul\u003e\n\u003cp dir=\"auto\"\u003eClone the repository from \u003ca href=\"https://github.com/jhuapl-boss/intern\"\u003ehttps://github.com/jhuapl-boss/intern\u003c/a\u003e and run\n\u003ccode\u003epip install -r requirements.txt\u003c/code\u003e from the repository's location on your\nsystem.\u003c/p\u003e\n\u003cp dir=\"auto\"\u003eAdd \u003ccode\u003e\u0026lt;repository location\u0026gt;\u003c/code\u003e to your \u003ccode\u003ePYTHONPATH\u003c/code\u003e.\u003c/p\u003e\n\u003cp dir=\"auto\"\u003eFor example, on a *nix system, if intern was cloned to ~/intern:\u003c/p\u003e\n\u003cp dir=\"auto\"\u003e\u003ccode\u003eexport PYTHONPATH=$PYTHONPATH:~/intern\u003c/code\u003e\u003c/p\u003e\n\u003cblockquote\u003e\n\u003cp dir=\"auto\"\u003e\u003cstrong\u003eFor Python 2 support, you will need to install intern v0.10.0 or earlier.\u003c/strong\u003e\u003c/p\u003e\n\u003c/blockquote\u003e\n\u003cdiv class=\"markdown-heading\" dir=\"auto\"\u003e\u003ch3 tabindex=\"-1\" class=\"heading-element\" dir=\"auto\"\u003eOptional Dependencies\u003c/h3\u003e\u003ca id=\"user-content-optional-dependencies\" class=\"anchor\" aria-label=\"Permalink: Optional Dependencies\" href=\"#optional-dependencies\"\u003e\u003csvg class=\"octicon octicon-link\" viewBox=\"0 0 16 16\" version=\"1.1\" width=\"16\" height=\"16\" aria-hidden=\"true\"\u003e\u003cpath d=\"m7.775 3.275 1.25-1.25a3.5 3.5 0 1 1 4.95 4.95l-2.5 2.5a3.5 3.5 0 0 1-4.95 0 .751.751 0 0 1 .018-1.042.751.751 0 0 1 1.042-.018 1.998 1.998 0 0 0 2.83 0l2.5-2.5a2.002 2.002 0 0 0-2.83-2.83l-1.25 1.25a.751.751 0 0 1-1.042-.018.751.751 0 0 1-.018-1.042Zm-4.69 9.64a1.998 1.998 0 0 0 2.83 0l1.25-1.25a.751.751 0 0 1 1.042.018.751.751 0 0 1 .018 1.042l-1.25 1.25a3.5 3.5 0 1 1-4.95-4.95l2.5-2.5a3.5 3.5 0 0 1 4.95 0 .751.751 0 0 1-.018 1.042.751.751 0 0 1-1.042.018 1.998 1.998 0 0 0-2.83 0l-2.5 2.5a1.998 1.998 0 0 0 0 2.83Z\"\u003e\u003c/path\u003e\u003c/svg\u003e\u003c/a\u003e\u003c/div\u003e\n\u003cp dir=\"auto\"\u003eTo install depedencies required to use the \u003ca href=\"https://github.com/seung-lab/cloud-volume\"\u003ecloud-volume\u003c/a\u003e remote, run the command:\u003c/p\u003e\n\u003cdiv class=\"highlight highlight-source-shell notranslate position-relative overflow-auto\" dir=\"auto\" data-snippet-clipboard-copy-content=\"pip install intern[cloudvolume]\"\u003e\u003cpre\u003epip install intern[cloudvolume]\u003c/pre\u003e\u003c/div\u003e\n\u003cdiv class=\"markdown-heading\" dir=\"auto\"\u003e\u003ch2 tabindex=\"-1\" class=\"heading-element\" dir=\"auto\"\u003eContributing\u003c/h2\u003e\u003ca id=\"user-content-contributing\" class=\"anchor\" aria-label=\"Permalink: Contributing\" href=\"#contributing\"\u003e\u003csvg class=\"octicon octicon-link\" viewBox=\"0 0 16 16\" version=\"1.1\" width=\"16\" height=\"16\" aria-hidden=\"true\"\u003e\u003cpath d=\"m7.775 3.275 1.25-1.25a3.5 3.5 0 1 1 4.95 4.95l-2.5 2.5a3.5 3.5 0 0 1-4.95 0 .751.751 0 0 1 .018-1.042.751.751 0 0 1 1.042-.018 1.998 1.998 0 0 0 2.83 0l2.5-2.5a2.002 2.002 0 0 0-2.83-2.83l-1.25 1.25a.751.751 0 0 1-1.042-.018.751.751 0 0 1-.018-1.042Zm-4.69 9.64a1.998 1.998 0 0 0 2.83 0l1.25-1.25a.751.751 0 0 1 1.042.018.751.751 0 0 1 .018 1.042l-1.25 1.25a3.5 3.5 0 1 1-4.95-4.95l2.5-2.5a3.5 3.5 0 0 1 4.95 0 .751.751 0 0 1-.018 1.042.751.751 0 0 1-1.042.018 1.998 1.998 0 0 0-2.83 0l-2.5 2.5a1.998 1.998 0 0 0 0 2.83Z\"\u003e\u003c/path\u003e\u003c/svg\u003e\u003c/a\u003e\u003c/div\u003e\n\u003cp dir=\"auto\"\u003ePlease submit bug reports, or get in touch using GitHub Issues.\u003c/p\u003e\n\u003cdiv class=\"markdown-heading\" dir=\"auto\"\u003e\u003ch2 tabindex=\"-1\" class=\"heading-element\" dir=\"auto\"\u003eCitation\u003c/h2\u003e\u003ca id=\"user-content-citation\" class=\"anchor\" aria-label=\"Permalink: Citation\" href=\"#citation\"\u003e\u003csvg class=\"octicon octicon-link\" viewBox=\"0 0 16 16\" version=\"1.1\" width=\"16\" height=\"16\" aria-hidden=\"true\"\u003e\u003cpath d=\"m7.775 3.275 1.25-1.25a3.5 3.5 0 1 1 4.95 4.95l-2.5 2.5a3.5 3.5 0 0 1-4.95 0 .751.751 0 0 1 .018-1.042.751.751 0 0 1 1.042-.018 1.998 1.998 0 0 0 2.83 0l2.5-2.5a2.002 2.002 0 0 0-2.83-2.83l-1.25 1.25a.751.751 0 0 1-1.042-.018.751.751 0 0 1-.018-1.042Zm-4.69 9.64a1.998 1.998 0 0 0 2.83 0l1.25-1.25a.751.751 0 0 1 1.042.018.751.751 0 0 1 .018 1.042l-1.25 1.25a3.5 3.5 0 1 1-4.95-4.95l2.5-2.5a3.5 3.5 0 0 1 4.95 0 .751.751 0 0 1-.018 1.042.751.751 0 0 1-1.042.018 1.998 1.998 0 0 0-2.83 0l-2.5 2.5a1.998 1.998 0 0 0 0 2.83Z\"\u003e\u003c/path\u003e\u003c/svg\u003e\u003c/a\u003e\u003c/div\u003e\n\u003cp dir=\"auto\"\u003eIf you find this library useful to your work, please consider citing the following:\u003c/p\u003e\n\u003cp dir=\"auto\"\u003e\u003ca href=\"https://www.biorxiv.org/content/10.1101/2020.05.15.098707v1\" rel=\"nofollow\"\u003ehttps://www.biorxiv.org/content/10.1101/2020.05.15.098707v1\u003c/a\u003e\u003c/p\u003e\n\u003cdiv class=\"snippet-clipboard-content notranslate position-relative overflow-auto\" data-snippet-clipboard-copy-content=\"@article{intern,\n\tdoi = {10.1101/2020.05.15.098707},\n\turl = {https://www.biorxiv.org/content/10.1101/2020.05.15.098707v1},\n\tyear = 2020,\n\tmonth = {may},\n\tpublisher = {BiorXiv},\n\tauthor = {Matelsky, Jordan K and Rodriguez, Luis and Xenes, Daniel and Gion, Timothy and Hider Jr., Robert and Wester, Brock and Gray-Roncal, William},\n\ttitle = {{intern: Integrated Toolkit for Extensible and Reproducible Neuroscience}},\n\tjournal = {BiorXiv}\n}\"\u003e\u003cpre class=\"notranslate\"\u003e\u003ccode\u003e@article{intern,\n\tdoi = {10.1101/2020.05.15.098707},\n\turl = {https://www.biorxiv.org/content/10.1101/2020.05.15.098707v1},\n\tyear = 2020,\n\tmonth = {may},\n\tpublisher = {BiorXiv},\n\tauthor = {Matelsky, Jordan K and Rodriguez, Luis and Xenes, Daniel and Gion, Timothy and Hider Jr., Robert and Wester, Brock and Gray-Roncal, William},\n\ttitle = {{intern: Integrated Toolkit for Extensible and Reproducible Neuroscience}},\n\tjournal = {BiorXiv}\n}\n\u003c/code\u003e\u003c/pre\u003e\u003c/div\u003e\n\u003cdiv class=\"markdown-heading\" dir=\"auto\"\u003e\u003ch2 tabindex=\"-1\" class=\"heading-element\" dir=\"auto\"\u003eThe Boss Legal Notes\u003c/h2\u003e\u003ca id=\"user-content-the-boss-legal-notes\" class=\"anchor\" aria-label=\"Permalink: The Boss Legal Notes\" href=\"#the-boss-legal-notes\"\u003e\u003csvg class=\"octicon octicon-link\" viewBox=\"0 0 16 16\" version=\"1.1\" width=\"16\" height=\"16\" aria-hidden=\"true\"\u003e\u003cpath d=\"m7.775 3.275 1.25-1.25a3.5 3.5 0 1 1 4.95 4.95l-2.5 2.5a3.5 3.5 0 0 1-4.95 0 .751.751 0 0 1 .018-1.042.751.751 0 0 1 1.042-.018 1.998 1.998 0 0 0 2.83 0l2.5-2.5a2.002 2.002 0 0 0-2.83-2.83l-1.25 1.25a.751.751 0 0 1-1.042-.018.751.751 0 0 1-.018-1.042Zm-4.69 9.64a1.998 1.998 0 0 0 2.83 0l1.25-1.25a.751.751 0 0 1 1.042.018.751.751 0 0 1 .018 1.042l-1.25 1.25a3.5 3.5 0 1 1-4.95-4.95l2.5-2.5a3.5 3.5 0 0 1 4.95 0 .751.751 0 0 1-.018 1.042.751.751 0 0 1-1.042.018 1.998 1.998 0 0 0-2.83 0l-2.5 2.5a1.998 1.998 0 0 0 0 2.83Z\"\u003e\u003c/path\u003e\u003c/svg\u003e\u003c/a\u003e\u003c/div\u003e\n\u003cp dir=\"auto\"\u003eUse or redistribution of the Boss system in source and/or binary forms, with or without modification, are permitted provided that the following conditions are met:\u003c/p\u003e\n\u003col dir=\"auto\"\u003e\n\u003cli\u003eRedistributions of source code or binary forms must adhere to the terms and conditions of any applicable software licenses.\u003c/li\u003e\n\u003cli\u003eEnd-user documentation or notices, whether included as part of a redistribution or disseminated as part of a legal or scientific disclosure (e.g. publication) or advertisement, must include the following acknowledgement: The Boss software system was designed and developed by the Johns Hopkins University Applied Physics Laboratory (JHU/APL).\u003c/li\u003e\n\u003cli\u003eThe names \"The Boss\", \"JHU/APL\", \"Johns Hopkins University\", \"Applied Physics Laboratory\", \"MICrONS\", or \"IARPA\" must not be used to endorse or promote products derived from this software without prior written permission. For written permission, please contact \u003ca href=\"mailto:BossAdmin@jhuapl.edu\"\u003eBossAdmin@jhuapl.edu\u003c/a\u003e.\u003c/li\u003e\n\u003cli\u003eThis source code and library is distributed in the hope that it will be useful, but is provided without any warranty of any kind.\u003c/li\u003e\n\u003c/ol\u003e\n\u003c/article\u003e","loaded":true,"timedOut":false,"errorMessage":null,"headerInfo":{"toc":[{"level":1,"text":"intern","anchor":"intern","htmlText":"intern"},{"level":2,"text":"Getting Started","anchor":"getting-started","htmlText":"Getting Started"},{"level":2,"text":"Documentation","anchor":"documentation","htmlText":"Documentation"},{"level":2,"text":"Installation","anchor":"installation","htmlText":"Installation"},{"level":3,"text":"Optional Dependencies","anchor":"optional-dependencies","htmlText":"Optional Dependencies"},{"level":2,"text":"Contributing","anchor":"contributing","htmlText":"Contributing"},{"level":2,"text":"Citation","anchor":"citation","htmlText":"Citation"},{"level":2,"text":"The Boss Legal Notes","anchor":"the-boss-legal-notes","htmlText":"The Boss Legal Notes"}],"siteNavLoginPath":"/login?return_to=https%3A%2F%2Fgithub.com%2Fjhuapl-boss%2Fintern"}},{"displayName":"license","repoName":"intern","refName":"master","path":"license","preferredFileType":"license","tabName":"License","richText":null,"loaded":false,"timedOut":false,"errorMessage":null,"headerInfo":{"toc":null,"siteNavLoginPath":"/login?return_to=https%3A%2F%2Fgithub.com%2Fjhuapl-boss%2Fintern"}}],"overviewFilesProcessingTime":0}},"appPayload":{"helpUrl":"https://docs.github.com","findFileWorkerPath":"/assets-cdn/worker/find-file-worker-1583894afd38.js","findInFileWorkerPath":"/assets-cdn/worker/find-in-file-worker-67668e8c2caa.js","githubDevUrl":null,"enabled_features":{"code_nav_ui_events":false,"overview_shared_code_dropdown_button":false,"react_blob_overlay":false,"copilot_conversational_ux_embedding_update":false,"copilot_smell_icebreaker_ux":true,"copilot_workspace":false,"accessible_code_button":true}}}}</script> <div data-target="react-partial.reactRoot"><style 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9.64a1.998 1.998 0 0 0 2.83 0l1.25-1.25a.751.751 0 0 1 1.042.018.751.751 0 0 1 .018 1.042l-1.25 1.25a3.5 3.5 0 1 1-4.95-4.95l2.5-2.5a3.5 3.5 0 0 1 4.95 0 .751.751 0 0 1-.018 1.042.751.751 0 0 1-1.042.018 1.998 1.998 0 0 0-2.83 0l-2.5 2.5a1.998 1.998 0 0 0 0 2.83Z"></path></svg></a></div> <p dir="auto"><a href="https://pypi.org/project/intern/" rel="nofollow"><img src="https://camo.githubusercontent.com/705dcdabe7336917a5b57636fbbefd12bfc5e75a2e85670277352a3f524bb782/68747470733a2f2f696d672e736869656c64732e696f2f707970692f762f696e7465726e3f7374796c653d666f722d7468652d6261646765" alt="PyPI version" data-canonical-src="https://img.shields.io/pypi/v/intern?style=for-the-badge" style="max-width: 100%;"></a> <a href="https://github.com/jhuapl-boss/intern/actions?query=workflow%3A%22Test+Python+Package%22"><img src="https://camo.githubusercontent.com/77f66d3bbb50e9970cc0bd5a8261d3ad359db4b07ea24b314f01a44cfa88a3a9/68747470733a2f2f696d672e736869656c64732e696f2f6769746875622f616374696f6e732f776f726b666c6f772f7374617475732f6a687561706c2d626f73732f696e7465726e2f74657374732e796d6c3f7374796c653d666f722d7468652d6261646765" alt="Python 3.6/3.7 Tests" data-canonical-src="https://img.shields.io/github/actions/workflow/status/jhuapl-boss/intern/tests.yml?style=for-the-badge" style="max-width: 100%;"></a></p> <p dir="auto"><strong>intern</strong> (Integrated Toolkit for Extensible and Reproducible Neuroscience) is a Python 3 module that enables big-data neuroscience. Currently, it provides an interface to common big-data neuroimaging databases such as <a href="https://bossdb.org" rel="nofollow">BossDB</a>, CloudVolume, DVID, and other standard formats.</p> <div class="markdown-heading" dir="auto"><h2 tabindex="-1" class="heading-element" dir="auto">Getting Started</h2><a id="user-content-getting-started" class="anchor" aria-label="Permalink: Getting Started" href="#getting-started"><svg class="octicon octicon-link" viewBox="0 0 16 16" version="1.1" width="16" height="16" aria-hidden="true"><path d="m7.775 3.275 1.25-1.25a3.5 3.5 0 1 1 4.95 4.95l-2.5 2.5a3.5 3.5 0 0 1-4.95 0 .751.751 0 0 1 .018-1.042.751.751 0 0 1 1.042-.018 1.998 1.998 0 0 0 2.83 0l2.5-2.5a2.002 2.002 0 0 0-2.83-2.83l-1.25 1.25a.751.751 0 0 1-1.042-.018.751.751 0 0 1-.018-1.042Zm-4.69 9.64a1.998 1.998 0 0 0 2.83 0l1.25-1.25a.751.751 0 0 1 1.042.018.751.751 0 0 1 .018 1.042l-1.25 1.25a3.5 3.5 0 1 1-4.95-4.95l2.5-2.5a3.5 3.5 0 0 1 4.95 0 .751.751 0 0 1-.018 1.042.751.751 0 0 1-1.042.018 1.998 1.998 0 0 0-2.83 0l-2.5 2.5a1.998 1.998 0 0 0 0 2.83Z"></path></svg></a></div> <p dir="auto">To quickly get started with intern, check out the wiki: <a href="https://github.com/jhuapl-boss/intern/wiki">https://github.com/jhuapl-boss/intern/wiki</a></p> <div class="markdown-heading" dir="auto"><h2 tabindex="-1" class="heading-element" dir="auto">Documentation</h2><a id="user-content-documentation" class="anchor" aria-label="Permalink: Documentation" href="#documentation"><svg class="octicon octicon-link" viewBox="0 0 16 16" version="1.1" width="16" height="16" aria-hidden="true"><path d="m7.775 3.275 1.25-1.25a3.5 3.5 0 1 1 4.95 4.95l-2.5 2.5a3.5 3.5 0 0 1-4.95 0 .751.751 0 0 1 .018-1.042.751.751 0 0 1 1.042-.018 1.998 1.998 0 0 0 2.83 0l2.5-2.5a2.002 2.002 0 0 0-2.83-2.83l-1.25 1.25a.751.751 0 0 1-1.042-.018.751.751 0 0 1-.018-1.042Zm-4.69 9.64a1.998 1.998 0 0 0 2.83 0l1.25-1.25a.751.751 0 0 1 1.042.018.751.751 0 0 1 .018 1.042l-1.25 1.25a3.5 3.5 0 1 1-4.95-4.95l2.5-2.5a3.5 3.5 0 0 1 4.95 0 .751.751 0 0 1-.018 1.042.751.751 0 0 1-1.042.018 1.998 1.998 0 0 0-2.83 0l-2.5 2.5a1.998 1.998 0 0 0 0 2.83Z"></path></svg></a></div> <p dir="auto">Full detailed documentation can be found here: <a href="https://jhuapl-boss.github.io/intern/" rel="nofollow">https://jhuapl-boss.github.io/intern/</a></p> <div class="markdown-heading" dir="auto"><h2 tabindex="-1" class="heading-element" dir="auto">Installation</h2><a id="user-content-installation" class="anchor" aria-label="Permalink: Installation" href="#installation"><svg class="octicon octicon-link" viewBox="0 0 16 16" version="1.1" width="16" height="16" aria-hidden="true"><path d="m7.775 3.275 1.25-1.25a3.5 3.5 0 1 1 4.95 4.95l-2.5 2.5a3.5 3.5 0 0 1-4.95 0 .751.751 0 0 1 .018-1.042.751.751 0 0 1 1.042-.018 1.998 1.998 0 0 0 2.83 0l2.5-2.5a2.002 2.002 0 0 0-2.83-2.83l-1.25 1.25a.751.751 0 0 1-1.042-.018.751.751 0 0 1-.018-1.042Zm-4.69 9.64a1.998 1.998 0 0 0 2.83 0l1.25-1.25a.751.751 0 0 1 1.042.018.751.751 0 0 1 .018 1.042l-1.25 1.25a3.5 3.5 0 1 1-4.95-4.95l2.5-2.5a3.5 3.5 0 0 1 4.95 0 .751.751 0 0 1-.018 1.042.751.751 0 0 1-1.042.018 1.998 1.998 0 0 0-2.83 0l-2.5 2.5a1.998 1.998 0 0 0 0 2.83Z"></path></svg></a></div> <ul dir="auto"> <li> <p dir="auto">It's always a good idea to use virtualenv to isolate your work from your system Python installation:</p> </li> <li> <p dir="auto">Using <a href="https://virtualenv.pypa.io/en/stable/" rel="nofollow">virtualenv</a>:</p> </li> </ul> <div class="highlight highlight-source-shell notranslate position-relative overflow-auto" dir="auto" data-snippet-clipboard-copy-content="virtualenv intern . intern/bin/activate"><pre>virtualenv intern <span class="pl-c1">.</span> intern/bin/activate</pre></div> <ul dir="auto"> <li>Using <a href="https://virtualenvwrapper.readthedocs.io/en/latest/" rel="nofollow">virtualenvwrapper</a>:</li> </ul> <div class="highlight highlight-source-shell notranslate position-relative overflow-auto" dir="auto" data-snippet-clipboard-copy-content="mkvirtualenv intern"><pre>mkvirtualenv intern</pre></div> <ul dir="auto"> <li>(Preferred) Install via pypi</li> </ul> <div class="highlight highlight-source-shell notranslate position-relative overflow-auto" dir="auto" data-snippet-clipboard-copy-content="pip install intern"><pre>pip install intern</pre></div> <ul dir="auto"> <li>Install via git</li> </ul> <p dir="auto">Clone the repository from <a href="https://github.com/jhuapl-boss/intern">https://github.com/jhuapl-boss/intern</a> and run <code>pip install -r requirements.txt</code> from the repository's location on your system.</p> <p dir="auto">Add <code><repository location></code> to your <code>PYTHONPATH</code>.</p> <p dir="auto">For example, on a *nix system, if intern was cloned to ~/intern:</p> <p dir="auto"><code>export PYTHONPATH=$PYTHONPATH:~/intern</code></p> <blockquote> <p dir="auto"><strong>For Python 2 support, you will need to install intern v0.10.0 or earlier.</strong></p> </blockquote> <div class="markdown-heading" dir="auto"><h3 tabindex="-1" class="heading-element" dir="auto">Optional Dependencies</h3><a id="user-content-optional-dependencies" class="anchor" aria-label="Permalink: Optional Dependencies" href="#optional-dependencies"><svg class="octicon octicon-link" viewBox="0 0 16 16" version="1.1" width="16" height="16" aria-hidden="true"><path d="m7.775 3.275 1.25-1.25a3.5 3.5 0 1 1 4.95 4.95l-2.5 2.5a3.5 3.5 0 0 1-4.95 0 .751.751 0 0 1 .018-1.042.751.751 0 0 1 1.042-.018 1.998 1.998 0 0 0 2.83 0l2.5-2.5a2.002 2.002 0 0 0-2.83-2.83l-1.25 1.25a.751.751 0 0 1-1.042-.018.751.751 0 0 1-.018-1.042Zm-4.69 9.64a1.998 1.998 0 0 0 2.83 0l1.25-1.25a.751.751 0 0 1 1.042.018.751.751 0 0 1 .018 1.042l-1.25 1.25a3.5 3.5 0 1 1-4.95-4.95l2.5-2.5a3.5 3.5 0 0 1 4.95 0 .751.751 0 0 1-.018 1.042.751.751 0 0 1-1.042.018 1.998 1.998 0 0 0-2.83 0l-2.5 2.5a1.998 1.998 0 0 0 0 2.83Z"></path></svg></a></div> <p dir="auto">To install depedencies required to use the <a href="https://github.com/seung-lab/cloud-volume">cloud-volume</a> remote, run the command:</p> <div class="highlight highlight-source-shell notranslate position-relative overflow-auto" dir="auto" data-snippet-clipboard-copy-content="pip install intern[cloudvolume]"><pre>pip install intern[cloudvolume]</pre></div> <div class="markdown-heading" dir="auto"><h2 tabindex="-1" class="heading-element" dir="auto">Contributing</h2><a id="user-content-contributing" class="anchor" aria-label="Permalink: Contributing" href="#contributing"><svg class="octicon octicon-link" viewBox="0 0 16 16" version="1.1" width="16" height="16" aria-hidden="true"><path d="m7.775 3.275 1.25-1.25a3.5 3.5 0 1 1 4.95 4.95l-2.5 2.5a3.5 3.5 0 0 1-4.95 0 .751.751 0 0 1 .018-1.042.751.751 0 0 1 1.042-.018 1.998 1.998 0 0 0 2.83 0l2.5-2.5a2.002 2.002 0 0 0-2.83-2.83l-1.25 1.25a.751.751 0 0 1-1.042-.018.751.751 0 0 1-.018-1.042Zm-4.69 9.64a1.998 1.998 0 0 0 2.83 0l1.25-1.25a.751.751 0 0 1 1.042.018.751.751 0 0 1 .018 1.042l-1.25 1.25a3.5 3.5 0 1 1-4.95-4.95l2.5-2.5a3.5 3.5 0 0 1 4.95 0 .751.751 0 0 1-.018 1.042.751.751 0 0 1-1.042.018 1.998 1.998 0 0 0-2.83 0l-2.5 2.5a1.998 1.998 0 0 0 0 2.83Z"></path></svg></a></div> <p dir="auto">Please submit bug reports, or get in touch using GitHub Issues.</p> <div class="markdown-heading" dir="auto"><h2 tabindex="-1" class="heading-element" dir="auto">Citation</h2><a id="user-content-citation" class="anchor" aria-label="Permalink: Citation" href="#citation"><svg class="octicon octicon-link" viewBox="0 0 16 16" version="1.1" width="16" height="16" aria-hidden="true"><path d="m7.775 3.275 1.25-1.25a3.5 3.5 0 1 1 4.95 4.95l-2.5 2.5a3.5 3.5 0 0 1-4.95 0 .751.751 0 0 1 .018-1.042.751.751 0 0 1 1.042-.018 1.998 1.998 0 0 0 2.83 0l2.5-2.5a2.002 2.002 0 0 0-2.83-2.83l-1.25 1.25a.751.751 0 0 1-1.042-.018.751.751 0 0 1-.018-1.042Zm-4.69 9.64a1.998 1.998 0 0 0 2.83 0l1.25-1.25a.751.751 0 0 1 1.042.018.751.751 0 0 1 .018 1.042l-1.25 1.25a3.5 3.5 0 1 1-4.95-4.95l2.5-2.5a3.5 3.5 0 0 1 4.95 0 .751.751 0 0 1-.018 1.042.751.751 0 0 1-1.042.018 1.998 1.998 0 0 0-2.83 0l-2.5 2.5a1.998 1.998 0 0 0 0 2.83Z"></path></svg></a></div> <p dir="auto">If you find this library useful to your work, please consider citing the following:</p> <p dir="auto"><a href="https://www.biorxiv.org/content/10.1101/2020.05.15.098707v1" rel="nofollow">https://www.biorxiv.org/content/10.1101/2020.05.15.098707v1</a></p> <div class="snippet-clipboard-content notranslate position-relative overflow-auto" data-snippet-clipboard-copy-content="@article{intern, doi = {10.1101/2020.05.15.098707}, url = {https://www.biorxiv.org/content/10.1101/2020.05.15.098707v1}, year = 2020, month = {may}, publisher = {BiorXiv}, author = {Matelsky, Jordan K and Rodriguez, Luis and Xenes, Daniel and Gion, Timothy and Hider Jr., Robert and Wester, Brock and Gray-Roncal, William}, title = {{intern: Integrated Toolkit for Extensible and Reproducible Neuroscience}}, journal = {BiorXiv} }"><pre class="notranslate"><code>@article{intern, doi = {10.1101/2020.05.15.098707}, url = {https://www.biorxiv.org/content/10.1101/2020.05.15.098707v1}, year = 2020, month = {may}, publisher = {BiorXiv}, author = {Matelsky, Jordan K and Rodriguez, Luis and Xenes, Daniel and Gion, Timothy and Hider Jr., Robert and Wester, Brock and Gray-Roncal, William}, title = {{intern: Integrated Toolkit for Extensible and Reproducible Neuroscience}}, journal = {BiorXiv} } </code></pre></div> <div class="markdown-heading" dir="auto"><h2 tabindex="-1" class="heading-element" dir="auto">The Boss Legal Notes</h2><a id="user-content-the-boss-legal-notes" class="anchor" aria-label="Permalink: The Boss Legal Notes" href="#the-boss-legal-notes"><svg class="octicon octicon-link" viewBox="0 0 16 16" version="1.1" width="16" height="16" aria-hidden="true"><path d="m7.775 3.275 1.25-1.25a3.5 3.5 0 1 1 4.95 4.95l-2.5 2.5a3.5 3.5 0 0 1-4.95 0 .751.751 0 0 1 .018-1.042.751.751 0 0 1 1.042-.018 1.998 1.998 0 0 0 2.83 0l2.5-2.5a2.002 2.002 0 0 0-2.83-2.83l-1.25 1.25a.751.751 0 0 1-1.042-.018.751.751 0 0 1-.018-1.042Zm-4.69 9.64a1.998 1.998 0 0 0 2.83 0l1.25-1.25a.751.751 0 0 1 1.042.018.751.751 0 0 1 .018 1.042l-1.25 1.25a3.5 3.5 0 1 1-4.95-4.95l2.5-2.5a3.5 3.5 0 0 1 4.95 0 .751.751 0 0 1-.018 1.042.751.751 0 0 1-1.042.018 1.998 1.998 0 0 0-2.83 0l-2.5 2.5a1.998 1.998 0 0 0 0 2.83Z"></path></svg></a></div> <p dir="auto">Use or redistribution of the Boss system in source and/or binary forms, with or without modification, are permitted provided that the following conditions are met:</p> <ol dir="auto"> <li>Redistributions of source code or binary forms must adhere to the terms and conditions of any applicable software licenses.</li> <li>End-user documentation or notices, whether included as part of a redistribution or disseminated as part of a legal or scientific disclosure (e.g. publication) or advertisement, must include the following acknowledgement: The Boss software system was designed and developed by the Johns Hopkins University Applied Physics Laboratory (JHU/APL).</li> <li>The names "The Boss", "JHU/APL", "Johns Hopkins University", "Applied Physics Laboratory", "MICrONS", or "IARPA" must not be used to endorse or promote products derived from this software without prior written permission. For written permission, please contact <a href="mailto:BossAdmin@jhuapl.edu">BossAdmin@jhuapl.edu</a>.</li> <li>This source code and library is distributed in the hope that it will be useful, but is provided without any warranty of any kind.</li> </ol> </article></div></div></div></div></div> <!-- --> <!-- --> <script type="application/json" id="__PRIMER_DATA_:R0:__">{"resolvedServerColorMode":"day"}</script></div> </react-partial> <input type="hidden" data-csrf="true" value="GtcsN84IVrxQRaEBrmqz3ae5ZXutMr2PUJrhfBV+FHzQMULKnnbBwkNBEXQ8mINzAMqBItE8P4p7JlizTm7lng==" /> </div> <div data-view-component="true" class="Layout-sidebar"> <div class="BorderGrid about-margin" data-pjax> <div class="BorderGrid-row"> <div class="BorderGrid-cell"> <div class="hide-sm hide-md"> <h2 class="mb-3 h4">About</h2> <p class="f4 my-3"> Python SDK for interacting with the BossDB REST API </p> <h3 class="sr-only">Resources</h3> <div class="mt-2"> <a class="Link--muted" 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<clipboard-copy aria-label="Copy" class="ClipboardButton btn js-clipboard-copy m-2 p-0" data-copy-feedback="Copied!" data-tooltip-direction="w"> <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-copy js-clipboard-copy-icon m-2"> <path d="M0 6.75C0 5.784.784 5 1.75 5h1.5a.75.75 0 0 1 0 1.5h-1.5a.25.25 0 0 0-.25.25v7.5c0 .138.112.25.25.25h7.5a.25.25 0 0 0 .25-.25v-1.5a.75.75 0 0 1 1.5 0v1.5A1.75 1.75 0 0 1 9.25 16h-7.5A1.75 1.75 0 0 1 0 14.25Z"></path><path d="M5 1.75C5 .784 5.784 0 6.75 0h7.5C15.216 0 16 .784 16 1.75v7.5A1.75 1.75 0 0 1 14.25 11h-7.5A1.75 1.75 0 0 1 5 9.25Zm1.75-.25a.25.25 0 0 0-.25.25v7.5c0 .138.112.25.25.25h7.5a.25.25 0 0 0 .25-.25v-7.5a.25.25 0 0 0-.25-.25Z"></path> </svg> <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-check js-clipboard-check-icon color-fg-success d-none m-2"> <path d="M13.78 4.22a.75.75 0 0 1 0 1.06l-7.25 7.25a.75.75 0 0 1-1.06 0L2.22 9.28a.751.751 0 0 1 .018-1.042.751.751 0 0 1 1.042-.018L6 10.94l6.72-6.72a.75.75 0 0 1 1.06 0Z"></path> </svg> </clipboard-copy> </div> </template> <template id="snippet-clipboard-copy-button-unpositioned"> <div class="zeroclipboard-container"> <clipboard-copy aria-label="Copy" class="ClipboardButton btn btn-invisible js-clipboard-copy m-2 p-0 d-flex flex-justify-center flex-items-center" data-copy-feedback="Copied!" data-tooltip-direction="w"> <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-copy js-clipboard-copy-icon"> <path d="M0 6.75C0 5.784.784 5 1.75 5h1.5a.75.75 0 0 1 0 1.5h-1.5a.25.25 0 0 0-.25.25v7.5c0 .138.112.25.25.25h7.5a.25.25 0 0 0 .25-.25v-1.5a.75.75 0 0 1 1.5 0v1.5A1.75 1.75 0 0 1 9.25 16h-7.5A1.75 1.75 0 0 1 0 14.25Z"></path><path d="M5 1.75C5 .784 5.784 0 6.75 0h7.5C15.216 0 16 .784 16 1.75v7.5A1.75 1.75 0 0 1 14.25 11h-7.5A1.75 1.75 0 0 1 5 9.25Zm1.75-.25a.25.25 0 0 0-.25.25v7.5c0 .138.112.25.25.25h7.5a.25.25 0 0 0 .25-.25v-7.5a.25.25 0 0 0-.25-.25Z"></path> </svg> <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-check js-clipboard-check-icon color-fg-success d-none"> <path d="M13.78 4.22a.75.75 0 0 1 0 1.06l-7.25 7.25a.75.75 0 0 1-1.06 0L2.22 9.28a.751.751 0 0 1 .018-1.042.751.751 0 0 1 1.042-.018L6 10.94l6.72-6.72a.75.75 0 0 1 1.06 0Z"></path> </svg> </clipboard-copy> </div> </template> </div> <div id="js-global-screen-reader-notice" class="sr-only mt-n1" aria-live="polite" aria-atomic="true" ></div> <div id="js-global-screen-reader-notice-assertive" class="sr-only mt-n1" aria-live="assertive" aria-atomic="true"></div> </body> </html>