OMERO Features | Open Microscopy Environment (OME)

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<meta name="twitter:title" content="The Open Microscopy Environment"> <meta name="twitter:image" content="https://www.openmicroscopy.org/img/logos/ome-logomark_twitter.png"> <title>OMERO Features | Open Microscopy Environment (OME)</title>  <link rel="apple-touch-icon" sizes="180x180" href="/apple-touch-icon.png?v=2"> <link rel="icon" type="image/png" sizes="32x32" href="/favicon-32x32.png?v=2"> <link rel="icon" type="image/png" sizes="16x16" href="/favicon-16x16.png?v=2"> <link rel="manifest" href="/site.webmanifest?v=2"> <link rel="mask-icon" href="/safari-pinned-tab.svg?v=2" color="#5bbad5"> <link rel="shortcut icon" href="/favicon.ico?v=2"> <meta name="msapplication-TileColor" content="#2b5797"> <meta name="theme-color" content="#ffffff">  <link rel="me" href="https://fosstodon.org/@ome"/> <link rel="stylesheet" type="text/css" media="all" href="https://fonts.googleapis.com/css?family=Open+Sans:400,600,700,400italic,600italic,700italic"> <link rel="stylesheet" type="text/css" 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href="/explore/">Explore</a></li> </ul> </div> </div>  <a name="top-of-page"></a>    <div class="title-bar" data-responsive-toggle="omero-menu" data-hide-for="medium"> <button class="menu-icon" type="button" data-toggle></button> OMERO <div class="title-bar-title"></div> </div> <div class="menu-subnav" id="omero-menu"> <div class="row"> <ul class="vertical medium-horizontal dropdown menu-subnav menu expanded small-12 columns" data-responsive-menu="accordion medium-dropdown"> <li><a href="/omero/">Overview</a></li> <li><a href="/omero/downloads/">Downloads</a></li> <li><a href="/omero/scientists/"><span class="show-for-large-only">for </span>Scientists</a></li> <li><a href="/omero/developers/"><span class="show-for-large-only">for </span>Developers</a></li> <li><a href="/omero/institution/"><span class="show-for-large-only">for </span>Institutions</a></li> <li><a href="/omero/features/"><span class="show-for-large-only">Key </span>Features</a></li> </ul> </div> </div> <header class="header" id="bg-image-omero"> <h1 class="headline">Key Features of OMERO</h1> <div class="row show-for-small-only" style="height: 120px;"></div> <ul class="header-subnav"> <li><a href="/omero/features/">NEW</a></li> <li><a href="/omero/features/import/">Import</a></li> <li><a href="/omero/features/organize/">Organize</a></li> <li><a href="/omero/features/share/">Share</a></li> <li><a href="/omero/features/view/">View</a></li> <li><a href="/omero/features/analyze/">Analyze</a></li> <li><a href="/omero/features/publish/">Publish</a></li> <li><a href="/omero/features/export/">Export</a></li> <li><a href="/omero/features/learning/">Teach</a></li> <li><a href="/omero/features/utility/">Administrate</a></li> </ul> </header>  <hr class="whitespace"> <div class="row column text-center"> <h2 class="header-blue">Getting your data into OMERO</h2> <hr class="medium-10"> <p class="subheader">OMERO stores your images, using Bio-Formats to read metadata and pixel data on import</p> <hr class="medium-10"> <div class="row small-12 medium-up-3"> <div class="omero-feature-container tall-content column text-center"> <img class="thumbnail omero-feature" alt="OMERO feature" src="/img/icons/omero-features-icons_import.svg"> <h4>Import images</h4> <p>Import from microscope, graphics and other imaging formats.</p> <a class="button hollow tiny" href="https://omero-guides.readthedocs.io/en/latest/upload/docs/import.html" target="_blank">View user guide</a> </div> <div class="omero-feature-container tall-content column text-center"> <img class="thumbnail omero-feature" alt="OMERO feature" src="/img/icons/omero-features-icons_bio-formats.svg"> <h4>Supported file formats</h4> <p>Import any of the 140+ formats read by Bio-Formats including microscopy, HCS, tissue scanner and graphics file formats.</p> <a class="button hollow tiny" href="https://bio-formats.readthedocs.io/en/v8.0.1/supported-formats.html" target="_blank">View formats guide</a> </div> <div class="omero-feature-container tall-content column text-center"> <img class="thumbnail omero-feature" alt="OMERO feature" src="/img/icons/omero-features-icons_command-line.svg"> <h4>Command Line Import</h4> <p>Use the command line to import images into OMERO.</p> <a class="button hollow tiny" href="https://omero.readthedocs.io/en/stable/users/cli/import.html" target="_blank">View CLI guide</a> <a class="button hollow tiny" href="https://www.youtube.com/playlist?list=PL-oOCWFUMH53JcqG_Fi09NcG1zS2VC0cP" target="_blank">View movies</a> </div> <div class="omero-feature-container tall-content column text-center"> <img class="thumbnail omero-feature" alt="OMERO feature" src="/img/icons/omero-features-icons_star.svg"> <h4>Improved performance</h4> <p>Stream-lined backend import process uploads large datasets such as HCS and SPIM much faster.</p> <a class="button hollow tiny" href="https://omero.readthedocs.io/en/stable/sysadmins/import-scenarios.html#parallel-import" target="_blank">View CLI guide</a> </div> <div class="omero-feature-container tall-content column text-center"> <img class="thumbnail omero-feature" alt="OMERO feature" src="/img/icons/omero-features-icons_dropbox.svg"> <h4>OMERO.dropbox</h4> <p>Allows automatic import from a defined directory of all supported file formats.</p> <a class="button hollow tiny" href="https://omero.readthedocs.io/en/stable/sysadmins/dropbox.html" target="_blank">View sysadmin guide</a> </div> <div class="omero-feature-container tall-content column text-center"> <img class="thumbnail omero-feature" alt="OMERO feature" src="/img/icons/omero-features-icons_import-for.svg"> <h4>Import-For</h4> <p>Group owners and sysadmins can import data for other users, which will then be owned by that other user.</p> <a class="button hollow tiny" href="https://omero-guides.readthedocs.io/en/latest/upload/docs/import-desktop-client.html#import-for-another-user" target="_blank">View user guide</a> <a class="button hollow tiny" href="https://omero.readthedocs.io/en/stable/users/cli/import.html" target="_blank">View CLI guide</a> </div> <div class="omero-feature-container tall-content column text-center"> <img class="thumbnail omero-feature" alt="OMERO feature" src="/img/icons/omero-features-icons_files.svg"> <h4>Original file formats</h4> <p>OMERO.server now uploads, exports, and stores files in their original file format.</p> <a class="button hollow tiny" href="https://omero.readthedocs.io/en/stable/developers/Server/FS.html" target="_blank">View developer guide</a> </div> <div class="omero-feature-container tall-content column text-center"> <img class="thumbnail omero-feature" alt="OMERO feature" src="/img/icons/omero-features-icons_integrity-reports.svg"> <h4>File integrity reports</h4> <p>Import process checks uploaded files aren't corrupted giving extra confidence that they are safely stored.</p> <a class="button hollow tiny" href="https://omero-guides.readthedocs.io/en/latest/upload/docs/import.html" target="_blank">View user guide</a> </div> </div> </div>   <div class="row column text-center"> <hr class="medium-10"> <h5 class="subheader"> Add functionality to your OMERO installation with community-developed optional apps and plugins </h4> <hr class="medium-10"> <div class="row small-12 medium-up-3"> <div class="omero-feature-container tall-content column text-center"> <img class="thumbnail omero-feature" alt="OMERO feature" src="/img/icons/omero-features-icons_smuggler.svg"> <h4>OME Smuggler</h4> <p>A backdoor importer for OMERO which can queue files for offline importing.</p> <a class="button hollow tiny" href="https://github.com/c0c0n3/ome-smuggler" target="_blank">Find out more</a> </div> </div> </div>   <hr class="whitespace"> <header class="marketing-hero" style="background-image: url('/img/bg/omero-omero.jpg');"> <div class="row"> <div class="small-12 columns bg-image-text-container-cta text-center"> <p class="hero-subheader">Get started working with your images now</p> <a 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OMERO Features | Open Microscopy Environment (OME)