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class="CardEditor__journal"> Antimicrobials, Resistance and Chemotherapy </p></div></a></article></li>   <li aria-hidden="true" class="Carousel__spacer Carousel__spacer--right"></li></ul> <button disabled="disabled" aria-label="Go to previous" data-event="carousel-btn-previous" class="Carousel__button Carousel__button--prev"></button> <button disabled="disabled" aria-label="Go to next" data-event="carousel-btn-next" class="Carousel__button Carousel__button--next"></button> <div aria-hidden="true" class="Carousel__overflown Carousel__overflown--left"></div> <div aria-hidden="true" class="Carousel__overflown Carousel__overflown--right"></div></div></section><section id="ModuleCards_3" class="Home__articles"><div class="Heading Heading--h2"><h2>Articles</h2> <span class="Link__wrapper"><a aria-label="See all (35,328)" href="microbiology/articles" data-event="heading-articles-a_link" class="Link Link--linkType Link--maincolor Link--medium Link--icon Link--chevronRight 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implications for antimicrobial stewardship and public health</h1> <p class="CardArticle__section"> in <span>Systems Microbiology</span></p> <ul class="CardArticle__authors"><li>Agnes Kilonzo-Nthenge</li><li>Iftekhar Rafiqullah</li><li>Michael Netherland</li><li>Maureen Nzomo</li><li>Abdullah Mafiz</li><li>Samuel Nahashon</li><li>Nur A. 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class="CardArticle__type">Original Research</p> <p class="CardArticle__date"> Accepted on 25 Nov 2024 </p></div> <h1 class="CardArticle__title">β-Lactam Antibiotics Induce Metabolic Perturbations Linked to ROS Generation Leads to Bacterial Impairment</h1> <p class="CardArticle__section"> in <span>Antimicrobials, Resistance and Chemotherapy</span></p> <ul class="CardArticle__authors"><li>Dongyang Ye</li><li>Jing Sun</li><li>Ran Jiang</li><li>Jiashen Chang</li><li>Yiming Liu</li><li>Xiangzheng Wu</li><li>Luqi Li</li><li>Yihan Luo</li><li>Juan Wang</li><li>Kangkang Guo</li>  </ul> <div class="CardArticle__spacer"></div>  <div class="CardArticle__journal"><div class="CardArticle__journal__name">Frontiers in Microbiology</div> <div class="CardArticle__journal__doi">doi 10.3389/fmicb.2024.1514825</div></div></div> <ul class="CardArticle__metrics"> </ul></a></article></li><li class="Carousel__card"><article class="CardArticle"><a 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This study used metagenomic sequencing to analyze 60 samples (30 per state) including water, soil, and manure (10 each) from Alabama (a mix of cattle and poultry sources) and Tennessee (primarily from cattle). The results highlighted a rich microbial diversity, predominantly comprising Bacteria (67%) and Viruses (33%), with a total of over 1,950 microbial species identified. The dominant bacterial phyla were Proteobacteria, Cyanobacteria, Actinobacteria, Firmicutes, and Bacteroidetes, with the viral communities primarily represented by Phixviricota and Uroviricota. Distinct state-specific microbial profiles were evident, with Alabama demonstrating a higher prevalence of viral populations and unique bacterial phyla compared to Tennessee. 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This study investigates the global metabolic 33 alterations induced by three β-lactam antibiotics-meropenem (a carbapenem), 34 ampicillin (a penicillin), and ceftazidime (a cephalosporin)-in Escherichia coli. Our 35 comprehensive metabolic profiling revealed significant perturbations in bacterial 36 metabolism, particularly in pathways such as glutathione metabolism, pantothenate and 37 CoA biosynthesis, pyrimidine metabolism, and purine metabolism. Antibiotic treatment 38 markedly increased reactive oxygen species levels, with meropenem reaching nearly 39 200 ± 7%, ampicillin at 174 ± 11%, and ceftazidime at 152 ± 7%. Additionally, β-lactam 40 antibiotics elevated 8-OHdG levels to 4.73 ± 0.56-fold for meropenem, 2.49 ± 0.19-41 fold for ampicillin, and 3.19 ± 0.34-fold for ceftazidime; 8-OHG levels increased to 42 5.57 ± 0.72-fold for meropenem, 3.08 ± 0.31-fold for ampicillin, and 4.45 ± 0.66-fold 43 for ceftazidime, indicating that oxidative stress enhances oxidative damage to bacterial 44 DNA and RNA. Notably, we observed a selective upregulation of specific amino acids 45 associated with cellular repair mechanisms, indicating a metabolic adaptation to 46 counteract oxidative damage. These findings illustrate that β-lactam antibiotics induce 47 a complex metabolic perturbations associated with ROS production, potentially 48 compromising critical cellular components. This study enhances our understanding of 49 the intricate relationship between antibiotic action and bacterial metabolism, providing 50 valuable insights for developing effective strategies against antibiotic-resistant 51 pathogens. 52 53 设置了格式设置了格式 ... 删除了: Conventional studies on bacterial resistance have 127 predominantly focused on mechanisms such as drug target inhibition, 128 efflux pumps, and enzymatic activity, resulting in an oversimplified 129 perspective that resistance solely arises from these processes. 130 However, recent research underscores the significance of 131 comprehending the impact of antibiotics on bacterial metabolism to 132 fully elucidate their mechanisms of action and inform the 133 development of enhanced therapeutic strategies.",publicUrl:"https:\u002F\u002Fwww.frontiersin.org\u002Farticles\u002F10.3389\u002Ffmicb.2024.1514825",isPublished:h,totalCount:mU,imageUrl:b,authors:[{userId:2848529,firstName:k,middleName:k,lastName:k,fullName:"Dongyang 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of Bacterial Communities Associated with Needle Mushroom (Flammulina filiformis) and its Production Environment",publishedDate:k,acceptedDate:me,recentDate:me,abstract:"Flammulina filiformis is an important edible and medicinal mushroom widely cultivated in East Asia.Its quality and health are strongly influenced by associated microbial communities. However, data on these bacterial communities associated with F. filiformis cultivation in Chinese farms are limited.This study investigated the bacterial communities in F. filiformis and its production environment using high-throughput 16S rRNA gene amplicon sequencing and culture-dependent methods. A total of 42 samples were collected from farms located in Jilin and Guizhou provinces. The analysis revealed diverse bacterial phyla including Proteobacteria, Firmicutes, Bacteroidetes, Actinobacteria, and Cyanobacteria. Genera such as Pseudomonas, Lactobacillus, Acinetobacter, Flavobacterium, and Phyllobacterium were identified. The relative abundance of Pseudomonas and Lactobacillus varied Identification of Bacterial Communities Associated with Needle Mushroom (Flammulina filiformis) and its Production Environment between the provinces. Phenotypic, biochemical, and molecular analyses identified pathogenic species, including Pseudomonas tolaasii, Ewingella americana, Stenotrophomonas maltophilia, Pseudomonas sp., Lelliottia amnigena, and Janthinobacterium lividum. Pathogenicity tests confirmed the disease-causing potential of P. tolaasii, E. americana, and J. lividum in F. filiformis. These findings highlight regional differences in bacterial community composition. They emphasize the need for tailored management practices. This study supports safe, high-quality mushroom and offers insights for improved cultivation practices, including Mushroom Good Agricultural Practices (MGAP).",publicUrl:"https:\u002F\u002Fwww.frontiersin.org\u002Farticles\u002F10.3389\u002Ffmicb.2024.1429213",isPublished:h,totalCount:mU,imageUrl:b,authors:[{userId:1948684,firstName:k,middleName:k,lastName:k,fullName:"Zhenghui Liu",loopProfileUrl:"https:\u002F\u002Fwww.frontiersin.org\u002Fpeople\u002F1948684\u002Foverview"},{userId:l,firstName:k,middleName:k,lastName:k,fullName:"Yunlong Cong",loopProfileUrl:k},{userId:1174603,firstName:k,middleName:k,lastName:k,fullName:"Frederick Leo Sossah",loopProfileUrl:"https:\u002F\u002Fwww.frontiersin.org\u002Fpeople\u002F1174603\u002Foverview"},{userId:1541007,firstName:k,middleName:k,lastName:k,fullName:"Hongyan Sheng",loopProfileUrl:"https:\u002F\u002Fwww.frontiersin.org\u002Fpeople\u002F1541007\u002Foverview"},{userId:1174850,firstName:k,middleName:k,lastName:k,fullName:"Yu Li",loopProfileUrl:"https:\u002F\u002Fwww.frontiersin.org\u002Fpeople\u002F1174850\u002Foverview"}],impact:{views:{count:nZ,formattedCount:"21"},pmcViews:{count:l,formattedCount:Y},frontiersViews:{count:l,formattedCount:Y},downloads:{count:l,formattedCount:Y},pmcDownloads:b,citations:{count:l,formattedCount:Y},scopusCitations:{count:l,formattedCount:Y},crossRefCitations:{count:l,formattedCount:Y},terminologyTerms:{totalViewTitle:nR,downLoadTitle:nS,citedTitle:nT,publishedDateTitle:b,acceptedDateTitle:b,articlesTitle:b,articleTitle:b,authorsTitle:b,authorTitle:b,archivedArticleLabel:b}},journal:{journalId:I,title:aB,slug:aZ,prefix:b,displayName:b,abbreviation:mV,publicUrl:b,imageUrl:b,journalTypeId:l,isSection:h,totalMatches:l,isBrandingVisible:h,isOwnerFrontiers:h,section:b},section:{id:n_,title:qh,isVisible:a,publicUrl:b,slug:b,isCrossListedSection:h},isPartOfResearchTopic:a,articleType:{typeId:nU,name:qf},terminologyTerms:{totalViewTitle:b,downLoadTitle:b,citedTitle:b,publishedDateTitle:nV,acceptedDateTitle:nW,articlesTitle:b,articleTitle:b,authorsTitle:b,authorTitle:b,archivedArticleLabel:nX},isFeatured:h,isArticleArchive:h,score:m,articleVolume:mX}],totalItems:mU}},{tag:hS,$props:{moduleType:xD,layout:iH,maxItems:aC,showSeeAll:a,items:[{link:{text:mX,url:"\u002Fjournals\u002Fmicrobiology\u002Fvolumes?volume-id=1256"}},{link:{text:"Volume 14 - 2023",url:"\u002Fjournals\u002Fmicrobiology\u002Fvolumes?volume-id=1036"}},{link:{text:"Volume 13 - 2022",url:"\u002Fjournals\u002Fmicrobiology\u002Fvolumes?volume-id=857"}},{link:{text:"Volume 12 - 2021",url:"\u002Fjournals\u002Fmicrobiology\u002Fvolumes?volume-id=733"}},{link:{text:"Volume 11 - 2020",url:"\u002Fjournals\u002Fmicrobiology\u002Fvolumes?volume-id=640"}}],totalItems:dL}},{tag:hS,$props:{moduleType:n$,layout:iH,maxItems:cG,showSeeAll:a,items:[{id:65524,title:"Critical- and High-Priority Pathogens in the Food Chain",slug:"critical--and-high-priority-pathogens-in-the-food-chain",description:"Critical- and high-priority pathogens in the food chain are those microorganisms that pose significant risks to public health when present in food. These pathogens can cause severe illnesses, including foodborne diseases, which may lead to hospitalization, long-term health consequences, or even death. Identifying and managing these pathogens is crucial for ensuring food safety.This Research Topic aims to investigate the prevalence, distribution, and impact of critical pathogens in the global food chain, focusing on high-priority microorganisms such as Salmonella, Escherichia coli, Listeria monocytogenes, Campylobacter, Norovirus, Clostridium botulinum, and Staphylococcus aureus. The study will explore the various sources of contamination, transmission routes, and contributing factors that lead to the presence of these pathogens in food products. Furthermore, the collection will evaluate current food safety measures, including regulatory standards, industry practices, and technological advancements aimed at detecting, preventing, and controlling these pathogens along the food supply chain. Special attention will be given to emerging trends, challenges, and opportunities in mitigating the risks posed by critical pathogens to public health and food security. The findings of this research will provide valuable insights for policymakers, food industry stakeholders, and public health authorities to develop evidence-based strategies for enhancing food safety and reducing the burden of foodborne illnesses globally.The scope of this Research Topic includes, but is not limited to, the following themes:•\tEpidemiology and prevalence of critical pathogens in different regions and food products. •\tIdentification of sources and transmission routes of pathogens along the food supply chain. •\t Evaluation of factors influencing pathogen contamination, such as agricultural practices, food processing techniques, and storage conditions.•\t Assessment of the impact of critical pathogens on public health, including the burden of foodborne illnesses, economic costs, and societal implications.•\t Analysis of current food safety regulations, standards, and enforcement mechanisms at local, national, and international levels.•\tReview of technological innovations and analytical methods for detecting, monitoring, and controlling critical pathogens in food products.",isOpenForSubmission:a,isEbookAvailable:h,publicUrl:"https:\u002F\u002Fwww.frontiersin.org\u002Fresearch-topics\u002F65524\u002Fcritical--and-high-priority-pathogens-in-the-food-chain",imageUrl:"https:\u002F\u002Fwww.frontiersin.org\u002Fimage\u002Fresearchtopic\u002F65524",isMagazinePage:h,impact:{views:{count:c,formattedCount:pY},downloads:{count:l,formattedCount:Y}},topicEditors:[{firstName:"Daniel",middleName:"F. 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In particular, yeast and lactic acid bacteria are often added to various substrates to produce a wide range of products, including probiotics for functional foods, animal feed, and pharmaceuticals.Traditionally, the fermentation process is controlled by adding starter cultures-concentrated forms of yeast and bacteria available for industrial use. These starters are available in frozen and dried forms with protective agents to maintain microorganism viability, especially during storage.Producing and preserving microorganism biomass is costly, requiring diverse nutrients such as carbohydrates, nitrogen, vitamins, and minerals. The energy involved in fermentation, conditioning, preservation, and marketing also affects the carbon footprint. To reduce environmental impact, several strategies can be employed such as: reusing by-products from the food industry as nutrient sources, and selecting strains that thrive in eco-friendly processes, like low temperatures, to minimize heating costs. For biomass or fermented product preservation, methods like spray and fluid bed drying offer cost-effective dehydration. However, selecting resistant microorganisms, suitable growth media, and optimal acclimation conditions are key to success.This Research Topic welcomes Original Research, Review, Mini Review, Methods and Perspective article on the following subjects: • Alternative by-products as nutrient sources for microorganisms;• Enhancing tolerance of microorganisms to different industrial stress processes, including fermentation, dehydration, and preservation;• Selecting or modifying strains from diverse environments to reduce environmental impact of food production;• Reducing production times or temperatures for biomass creation.",isOpenForSubmission:a,isEbookAvailable:h,publicUrl:"https:\u002F\u002Fwww.frontiersin.org\u002Fresearch-topics\u002F68314\u002Fsustainable-production-of-microorganism-biomass-for-industrial-fermentation",imageUrl:"https:\u002F\u002Fwww.frontiersin.org\u002Fimage\u002Fresearchtopic\u002F68314",isMagazinePage:h,impact:{views:{count:338,formattedCount:"338"},downloads:{count:l,formattedCount:Y}},topicEditors:[{firstName:"E.",middleName:"Emma",lastName:"Tymczyszyn",fullName:"E. 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Microorganisms are crucial for nutrient cycling, improving soil health, and promoting plant growth. As global challenges such as climate change, food insecurity, and soil degradation become more pressing, understanding and leveraging plant-microbe interactions has become increasingly critical for sustainable agricultural development and human health. Research in this area focuses on how soil biodiversity can be used for regenerative agriculture by enhancing nutrient uptake, strengthening crop resilience to environmental stresses, and reducing dependence on synthetic fertilizers. Additionally, addressing microbial diseases through biocontrol methods is pivotal. By exploring microbial solutions in agricultural systems, we can potentially increase crop yields while minimizing environmental impacts, aligning with several United Nations Sustainable Development Goals (SDGs). Recent advances in high-throughput data generation and new data analysis technologies, such as next-generation sequencing (NGS) and metagenomics, have revolutionized our understanding of plant-microbe interactions. These innovations allow researchers to explore microbial communities and their functions in unprecedented detail, offering new opportunities to enhance crop resilience, nutrient uptake, soil health, and disease management.This Research Topic aims to highlight innovative approaches that harness soil biodiversity to support sustainable and regenerative farming practices for a growing global population. The collection will address the role of soil biodiversity in regenerative and sustainable agricultural practices in light of growing environmental challenges such as climate change, soil degradation, and water scarcity. Traditional agriculture, with its reliance on chemical fertilizers and pesticides, has led to significant environmental degradation, threatening long-term food security. Advances in microbial ecology and biotechnology, however, offer promising alternatives. Plant growth-promoting microorganisms (PGPM) have the potential to enhance nutrient uptake, improve plant tolerance to abiotic stresses, reduce the need for synthetic inputs, and provide effective biocontrol against plant pathogens. Moreover, the advent of technologies such as next-generation sequencing (NGS) and precision agriculture, including IoT applications and data analytics, has opened new possibilities for optimizing resource use and promoting environmental sustainability.The Topic Editors of this collection invite research contributions that explore these cutting-edge solutions, aiming to provide actionable insights for fostering resilient, sustainable agricultural systems capable of meeting the world’s food demands while protecting the planet. The team invites submissions that explore the multifaceted role of plant-microbe interactions in promoting sustainable agriculture. Specific themes of interest include:- The mechanisms by which microbial communities enhance nutrient cycling, soil health, and disease resistance.- The effectiveness of bio-fertilizers and their impact on crop yields.- Strategies for improving plant resilience to environmental stressors through microbial associations.- Development and application of microbial consortia tailored for specific crops or conditions.- Advances in genomic techniques, such as next-generation sequencing, for understanding plant-microbe dynamics and biocontrol strategies.- Successful implementations of microbial solutions in agricultural practices, including biocontrol of diseases.A variety of manuscript types are welcomed, including: original research articles, reviews, and methodological papers. 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Recent innovations in metabolic engineering, chemical biology, and synthetic biology have significantly advanced our capabilities to optimize these cell factories for improved biomolecule production. These advancements offer promising alternatives to conventional chemical processes, enhancing efficiency and environmental sustainability. For example, developments such as the engineering of Escherichia coli for the production of biodegradable plastics and the use of Saccharomyces cerevisiae for bioethanol production have showcased the potential of microbial cell factories. However, challenges remain, such as optimizing metabolic pathways for higher yields and developing robust strains capable of surviving industrial conditions. This Research Topic focuses on how these technological innovations are shaping the future of biomanufacturing, aligning with global sustainability goals.This Research Topic aims to leverage synthetic biology advancements to develop microbial cell factories for a sustainable bioeconomy. We aim to expand our understanding of how microbial factories can be better utilized in the production of biomolecules, biochemicals, bioremediation, functional foods, and biosensor applications. This collection highlights the importance of metabolic engineering, chemical biology, and synthetic biology approaches to enhance the stability and efficiency of microbial cell factories.We welcome Original Research, Review and Methods articles focusing on advanced applications of microbial cell factories in various biotechnological fields:• Chemical biology and metabolic engineering;• Environmental biotechnology and sustainability;• Genomics, systems biology and synthetic biology; • CRISPR based genome editing;• Synthetic regulatory networks.This Research Topic is in relation to the International Conference on Environmental, Chemical, and Synthetic Biology towards Sustainable Development Goals 2024 (ICECSSD-24), though contributions are welcome from any researcher. 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Allergy","2574-4593","JCIA",.6,3754,"Journal of Abdominal Wall Surgery","journal-of-abdominal-wall-surgery","2813-2092","jaws",2444,2844,"International Journal of Public Health","international-journal-of-public-health","Int J Public Health","1661-8564","ijph","GSL Test",185,{},2785,3151,{},2369,{},2695,{},3411,{},2374,2694,{},2375,{},2376,2692,{},"Security, Privacy and Authentication","security-privacy-and-authentication",2280,144,{},1488,1941,{},2114,2486,{},2725,3129,{},1910,{},1477,{},1481,1930,{},1758,{},1951,{},1460,1902,{},1562,2012,{},"Haptics","haptics",{},2006,{},2009,{},2011,{},2008,{},2451,{},{},2452,{},2448,{},2017,2457,{},2016,{},2014,2454,{},2015,2455,{},2013,2453,{},2010,2450,{},3565,{},{},1046,"Animal Nutrition and Metabolism","animal-nutrition-and-metabolism",38,{},{},{},"Livestock 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