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<!DOCTYPE html> <html> <head>  <script async src="https://www.googletagmanager.com/gtag/js?id=UA-109268803-1"></script> <script> window.dataLayer = window.dataLayer || []; function gtag(){dataLayer.push(arguments);} gtag('js', new Date()); gtag('config', 'UA-109268803-1'); </script> <title>DFAST - submit a new job -</title> <meta name="viewport" content="width=device-width, initial-scale=1.0">  <link href="//cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.3.7/css/bootstrap.min.css" rel="stylesheet"> <link rel="stylesheet" type="text/css" href="/static/chosen-bootstrap.css"/> <style> #minimum_length {text-align: right;} </style> <link rel="shortcut icon" href="/static/favicon.ico" type="image/x-icon"> <link rel="icon" href="/static/favicon.ico" type="image/x-icon"> <style type="text/css"> .container {width: 95%;} </style> </head> <body> <nav class="navbar navbar-inverse navbar-static-top" role="navigation"> <div class="container"> <div class="navbar-header"> <button type="button" class="navbar-toggle" data-toggle="collapse" data-target=".navbar-collapse"> <span class="sr-only">Toggle navigation</span> <span class="icon-bar"></span> <span class="icon-bar"></span> <span class="icon-bar"></span> </button> <a style="margin-left: -20px; margin-top: -8px" class="navbar-brand" href="/"><img height="30px" src="/static/DFAST_inverse.png" class="" alt="dfast_logo"></a> </div> <div class="navbar-collapse collapse"> <ul class="nav navbar-nav"> <li class="dropdown"> <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false" id="analysis-dropdown">Analysis <span class="caret"></span></a> <ul class="dropdown-menu" role="menu"> <li><a href="/dfc/">Genome Annotation</a></li> <li class="divider"></li> <li><a href="/dfv/submit/">Genome Annotation for SARS-CoV-2</a></li> <li><a href="/dfv/vadr/">NCBI VADR (Beta, for viral sequences)</a></li> <li class="divider"></li> <li><a href="/dqc/submit/">Taxonomy/Completeness Check</a></li> </ul> </li> </ul> <ul class="nav navbar-nav navbar-right">  <li><a href="/dfc/distribution/">DFAST-core</a></li> <li><a href="/api/">API</a></li> <li class="dropdown"> <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false" id="help-dropdown">Help <span class="caret"></span></a> <ul class="dropdown-menu" role="menu"> <li><a href="/about">About DFAST</a></li> <li><a href="/faq">FAQ</a></li> <li><a href="/help_annotation">Help - DFAST</a></li> <li><a href="/help_login">Help - Login and Data Submission</a></li> </ul> </li> <li><a href="/auth/">Sign in</a></li> </ul> </div> </div> </nav> <div id="wrapper"> <div class="container"> <div class="page-container" id="page-container" style="width: 95%"> <div class="page-header" style="margin-top: 10px"> <div class="row"> <div class="col-xs-9"> <p><span class="lead">DFAST</span> Prokaryotic genome annotation pipeline</p> </div> </div> </div> <form id="form_submit" action="" method="post" enctype="multipart/form-data" > <div class="row"> <div class="form-group col-xs-6"> <label for="queryFile" class="control-label"><label for="queryFile">Query File (Fasta format, up to 15Mbyte)</label></label> <input class="form-control" id="queryFile" name="queryFile" placeholder="" style="height:40px" type="file"> </div> <div class="cols-xs-6" style="margin-top: 40px"> <label style=""> <input type="checkbox" id="demo_mode" name="demo_mode" value="y"> Demo mode (Sample annotation for E.coli O26) </label> </div> </div> <div class="row"> <div class="form-group col-xs-9"> <label for="title" class="control-label"><label for="title">Name/Title for the Job</label></label> <input class="form-control" id="title" name="title" placeholder="(optional)" type="text" value=""> </div> </div> <div class="row"> <div class="form-group col-xs-9"> <label for="mail" class="control-label"><label for="mail">Mail Address</label></label> <input class="form-control" id="mail" name="mail" placeholder="E-mail notification will be sent to this address when the job is completed. (optional)" type="email" value=""> </div> </div> <div class="row">  <div class="checkbox col-xs-3"> <label> <input type="checkbox" id="enable_tc" name="enable_tc" value="y" > <strong>Perform Taxonomy Check</strong> </label> <span class="text-primary glyphicon glyphicon-question-sign" aria-hidden="true" data-toggle="popover" title="Taxonomy check" data-content=" Evaluates taxonomic identity of the genome by querying against 13,000 reference genomes from type strains. DFAST_QC uses FastANI (Jain, et al. 2018) to calculate average nucleotide identity (ANI). In general, the ANI value between the same species is above 95%. " data-placement="top"></span> </div>  <div class="col-xs-9"> <div class="row"> <div class="checkbox col-xs-12"> <label> <input type="checkbox" id="enable_cc" name="enable_cc" value="y" > <strong>Perform Completeness Check</strong> </label> <span class="text-primary glyphicon glyphicon-question-sign" aria-hidden="true" data-toggle="popover" title="Completeness check" data-content=" DFAST_QC employs CheckM (Parks, et al. 2014) to calculate completeness and contamination values of the genome. DFAST_QC automatically determines the reference marker set for CheckM based on the result of taxonomy check. Users can also arbitrarily specify the marker set to be used. " data-placement="top"></span> </div> </div> <div class="row" id="taxon_selector"> <div class="col-xs-12"> <p>Select a Taxonomic Group for CheckM. (Default: automatically inferred)</p> </div> <div class="form-group col-xs-2" style="margin-left:0px"> <label for="rank" id="label-rank">Rank</label><select class="form-control" id="rank" name="rank"><option value="auto">auto</option><option value="life">life</option><option value="domain">domain</option><option value="phylum">phylum</option><option value="class">class</option><option value="order">order</option><option value="family">family</option><option value="genus">genus</option><option value="species">species</option></select> </div> <div class="form-group col-xs-6"> <label id="label-taxon">Taxon</label> <div id="taxon_fields"> <div id="div_auto"><select class="form-control chosen-select" id="field_auto" name="field_auto"><option value="">-- auto --</option></select></div> <div id="div_life"><select class="form-control chosen-select" id="field_life" name="field_life"><option value="0">Prokaryote (5656 genomes, 24 marker sets)</option></select></div> <div id="div_domain"><select class="form-control chosen-select" id="field_domain" name="field_domain"><option value="2157">Archaea (207 genomes, 107 marker sets)</option><option value="2">Bacteria (5449 genomes, 58 marker sets)</option></select></div> <div id="div_phylum"><select class="form-control chosen-select" id="field_phylum" name="field_phylum"><option value="57723">Acidobacteria (15 genomes, 276 marker sets)</option><option value="201174">Actinobacteria (731 genomes, 119 marker sets)</option><option value="200783">Aquificae (18 genomes, 369 marker sets)</option><option value="976">Bacteroidetes (419 genomes, 195 marker sets)</option><option value="204428">Chlamydiae (64 genomes, 185 marker sets)</option><option value="1090">Chlorobi (12 genomes, 333 marker sets)</option><option value="200795">Chloroflexi (20 genomes, 149 marker sets)</option><option value="28889">Crenarchaeota (54 genomes, 168 marker sets)</option><option value="1117">Cyanobacteria (129 genomes, 368 marker sets)</option><option value="1297">Deinococcus-Thermus (40 genomes, 359 marker sets)</option><option value="68297">Dictyoglomi (2 genomes, 103 marker sets)</option><option value="28890">Euryarchaeota (146 genomes, 125 marker sets)</option><option value="32066">Fusobacteria (32 genomes, 159 marker sets)</option><option value="1134404">Ignavibacteriae (2 genomes, 383 marker sets)</option><option value="40117">Nitrospirae (4 genomes, 379 marker sets)</option><option value="203682">Planctomycetes (11 genomes, 256 marker sets)</option><option value="1224">Proteobacteria (2343 genomes, 119 marker sets)</option><option value="203691">Spirochaetes (71 genomes, 127 marker sets)</option><option value="508458">Synergistetes (13 genomes, 160 marker sets)</option><option value="544448">Tenericutes (119 genomes, 105 marker sets)</option><option value="651137">Thaumarchaeota (4 genomes, 265 marker sets)</option><option value="74201">Verrucomicrobia (12 genomes, 245 marker sets)</option></select></div> <div id="div_class"><select class="form-control chosen-select" id="field_class" name="field_class"><option value="204432">Acidobacteriia (10 genomes, 395 marker sets)</option><option value="28211">Alphaproteobacteria (648 genomes, 148 marker sets)</option><option value="187857">Aquificae (18 genomes, 369 marker sets)</option><option value="183980">Archaeoglobi (5 genomes, 392 marker sets)</option><option value="91061">Bacilli (821 genomes, 136 marker sets)</option><option value="200643">Bacteroidia (211 genomes, 266 marker sets)</option><option value="28216">Betaproteobacteria (322 genomes, 234 marker sets)</option><option value="204429">Chlamydiia (64 genomes, 185 marker sets)</option><option value="32061">Chloroflexi (9 genomes, 315 marker sets)</option><option value="186801">Clostridia (446 genomes, 110 marker sets)</option><option value="768503">Cytophagia (48 genomes, 328 marker sets)</option><option value="68337">Deferribacteres (6 genomes, 339 marker sets)</option><option value="301297">Dehalococcoidetes (5 genomes, 54 marker sets)</option><option value="188787">Deinococci (40 genomes, 359 marker sets)</option><option value="28221">Deltaproteobacteria (93 genomes, 125 marker sets)</option><option value="203486">Dictyoglomia (2 genomes, 103 marker sets)</option><option value="3031852">Epsilonproteobacteria (111 genomes, 271 marker sets)</option><option value="117743">Flavobacteriia (126 genomes, 202 marker sets)</option><option value="203490">Fusobacteriia (32 genomes, 159 marker sets)</option><option value="1236">Gammaproteobacteria (1167 genomes, 178 marker sets)</option><option value="183963">Halobacteria (59 genomes, 241 marker sets)</option><option value="533205">Holophagae (2 genomes, 459 marker sets)</option><option value="795747">Ignavibacteria (2 genomes, 383 marker sets)</option><option value="183925">Methanobacteria (12 genomes, 264 marker sets)</option><option value="183939">Methanococci (16 genomes, 439 marker sets)</option><option value="224756">Methanomicrobia (29 genomes, 165 marker sets)</option><option value="31969">Mollicutes (119 genomes, 105 marker sets)</option><option value="909932">Negativicutes (64 genomes, 167 marker sets)</option><option value="414999">Opitutae (4 genomes, 427 marker sets)</option><option value="203683">Planctomycetia (11 genomes, 256 marker sets)</option><option value="117747">Sphingobacteriia (27 genomes, 233 marker sets)</option><option value="203692">Spirochaetia (71 genomes, 127 marker sets)</option><option value="649775">Synergistia (13 genomes, 160 marker sets)</option><option value="183968">Thermococci (16 genomes, 315 marker sets)</option><option value="67799">Thermodesulfobacteria (5 genomes, 440 marker sets)</option><option value="189775">Thermomicrobia (2 genomes, 336 marker sets)</option><option value="183967">Thermoplasmata (4 genomes, 310 marker sets)</option><option value="183924">Thermoprotei (54 genomes, 168 marker sets)</option><option value="188708">Thermotogae (14 genomes, 267 marker sets)</option><option value="203494">Verrucomicrobiae (7 genomes, 284 marker sets)</option><option value="580370">Zetaproteobacteria (2 genomes, 184 marker sets)</option></select></div> <div id="div_order"><select class="form-control chosen-select" id="field_order" name="field_order"><option value="186329">Acholeplasmatales (12 genomes, 88 marker sets)</option><option value="871006">Acidilobales (3 genomes, 236 marker sets)</option><option value="225057">Acidithiobacillales (6 genomes, 254 marker sets)</option><option value="204433">Acidobacteriales (10 genomes, 395 marker sets)</option><option value="2037">Actinomycetales (620 genomes, 152 marker sets)</option><option value="135624">Aeromonadales (23 genomes, 237 marker sets)</option><option value="135622">Alteromonadales (116 genomes, 267 marker sets)</option><option value="32069">Aquificales (18 genomes, 369 marker sets)</option><option value="2231">Archaeoglobales (5 genomes, 392 marker sets)</option><option value="1385">Bacillales (331 genomes, 134 marker sets)</option><option value="171549">Bacteroidales (210 genomes, 267 marker sets)</option><option value="213481">Bdellovibrionales (5 genomes, 290 marker sets)</option><option value="85004">Bifidobacteriales (77 genomes, 220 marker sets)</option><option value="80840">Burkholderiales (194 genomes, 216 marker sets)</option><option value="213849">Campylobacterales (107 genomes, 273 marker sets)</option><option value="135615">Cardiobacteriales (3 genomes, 349 marker sets)</option><option value="204458">Caulobacterales (15 genomes, 366 marker sets)</option><option value="51291">Chlamydiales (64 genomes, 185 marker sets)</option><option value="191411">Chlorobiales (12 genomes, 333 marker sets)</option><option value="32064">Chloroflexales (8 genomes, 342 marker sets)</option><option value="135613">Chromatiales (92 genomes, 283 marker sets)</option><option value="1118">Chroococcales (55 genomes, 378 marker sets)</option><option value="186802">Clostridiales (395 genomes, 114 marker sets)</option><option value="84999">Coriobacteriales (23 genomes, 155 marker sets)</option><option value="768507">Cytophagales (48 genomes, 328 marker sets)</option><option value="191393">Deferribacterales (6 genomes, 339 marker sets)</option><option value="1202465">Dehalococcoidales (5 genomes, 54 marker sets)</option><option value="118964">Deinococcales (17 genomes, 388 marker sets)</option><option value="213118">Desulfobacterales (20 genomes, 189 marker sets)</option><option value="213115">Desulfovibrionales (40 genomes, 252 marker sets)</option><option value="213113">Desulfurellales (4 genomes, 252 marker sets)</option><option value="114380">Desulfurococcales (14 genomes, 213 marker sets)</option><option value="69541">Desulfuromonadales (13 genomes, 283 marker sets)</option><option value="203487">Dictyoglomales (2 genomes, 103 marker sets)</option><option value="91347">Enterobacteriales (262 genomes, 121 marker sets)</option><option value="186328">Entomoplasmatales (9 genomes, 151 marker sets)</option><option value="526525">Erysipelotrichales (18 genomes, 159 marker sets)</option><option value="200644">Flavobacteriales (126 genomes, 202 marker sets)</option><option value="203491">Fusobacteriales (32 genomes, 159 marker sets)</option><option value="53433">Halanaerobiales (7 genomes, 189 marker sets)</option><option value="2235">Halobacteriales (59 genomes, 241 marker sets)</option><option value="574975">Holophagales (2 genomes, 459 marker sets)</option><option value="119069">Hydrogenophilales (3 genomes, 209 marker sets)</option><option value="795748">Ignavibacteriales (2 genomes, 383 marker sets)</option><option value="186826">Lactobacillales (490 genomes, 183 marker sets)</option><option value="118969">Legionellales (23 genomes, 269 marker sets)</option><option value="580371">Mariprofundales (2 genomes, 184 marker sets)</option><option value="2158">Methanobacteriales (12 genomes, 264 marker sets)</option><option value="570264">Methanocellales (3 genomes, 317 marker sets)</option><option value="2182">Methanococcales (16 genomes, 439 marker sets)</option><option value="2191">Methanomicrobiales (11 genomes, 230 marker sets)</option><option value="94695">Methanosarcinales (14 genomes, 270 marker sets)</option><option value="135618">Methylococcales (15 genomes, 348 marker sets)</option><option value="2085">Mycoplasmatales (98 genomes, 127 marker sets)</option><option value="29">Myxococcales (8 genomes, 348 marker sets)</option><option value="235899">Nautiliales (4 genomes, 351 marker sets)</option><option value="206351">Neisseriales (69 genomes, 446 marker sets)</option><option value="32003">Nitrosomonadales (7 genomes, 314 marker sets)</option><option value="31932">Nitrosopumilales (2 genomes, 109 marker sets)</option><option value="189778">Nitrospirales (4 genomes, 379 marker sets)</option><option value="1161">Nostocales (18 genomes, 508 marker sets)</option><option value="135619">Oceanospirillales (41 genomes, 229 marker sets)</option><option value="415000">Opitutales (3 genomes, 521 marker sets)</option><option value="1150">Oscillatoriales (25 genomes, 415 marker sets)</option><option value="135625">Pasteurellales (83 genomes, 440 marker sets)</option><option value="112">Planctomycetales (10 genomes, 265 marker sets)</option><option value="52604">Pleurocapsales (6 genomes, 624 marker sets)</option><option value="72274">Pseudomonadales (274 genomes, 326 marker sets)</option><option value="356">Rhizobiales (349 genomes, 244 marker sets)</option><option value="204455">Rhodobacterales (104 genomes, 327 marker sets)</option><option value="206389">Rhodocyclales (26 genomes, 264 marker sets)</option><option value="204441">Rhodospirillales (57 genomes, 228 marker sets)</option><option value="766">Rickettsiales (81 genomes, 210 marker sets)</option><option value="84996">Rubrobacterales (2 genomes, 269 marker sets)</option><option value="909929">Selenomonadales (64 genomes, 167 marker sets)</option><option value="588673">Solirubrobacterales (4 genomes, 307 marker sets)</option><option value="200666">Sphingobacteriales (27 genomes, 233 marker sets)</option><option value="204457">Sphingomonadales (31 genomes, 270 marker sets)</option><option value="136">Spirochaetales (71 genomes, 127 marker sets)</option><option value="2281">Sulfolobales (20 genomes, 141 marker sets)</option><option value="649776">Synergistales (13 genomes, 160 marker sets)</option><option value="68933">Thermales (23 genomes, 331 marker sets)</option><option value="68295">Thermoanaerobacterales (44 genomes, 158 marker sets)</option><option value="2258">Thermococcales (16 genomes, 315 marker sets)</option><option value="188710">Thermodesulfobacteriales (5 genomes, 440 marker sets)</option><option value="2301">Thermoplasmatales (4 genomes, 310 marker sets)</option><option value="2266">Thermoproteales (13 genomes, 257 marker sets)</option><option value="2419">Thermotogales (14 genomes, 267 marker sets)</option><option value="72273">Thiotrichales (64 genomes, 251 marker sets)</option><option value="48461">Verrucomicrobiales (7 genomes, 284 marker sets)</option><option value="135623">Vibrionales (80 genomes, 367 marker sets)</option><option value="135614">Xanthomonadales (63 genomes, 264 marker sets)</option></select></div> <div id="div_family"><select class="form-control chosen-select" id="field_family" name="field_family"><option value="433">Acetobacteraceae (30 genomes, 264 marker sets)</option><option value="2146">Acholeplasmataceae (12 genomes, 88 marker sets)</option><option value="909930">Acidaminococcaceae (7 genomes, 256 marker sets)</option><option value="871007">Acidilobaceae (2 genomes, 144 marker sets)</option><option value="225058">Acidithiobacillaceae (5 genomes, 200 marker sets)</option><option value="204434">Acidobacteriaceae (9 genomes, 396 marker sets)</option><option value="2049">Actinomycetaceae (42 genomes, 211 marker sets)</option><option value="622451">Actinopolysporaceae (3 genomes, 433 marker sets)</option><option value="186827">Aerococcaceae (10 genomes, 195 marker sets)</option><option value="84642">Aeromonadaceae (17 genomes, 368 marker sets)</option><option value="506">Alcaligenaceae (27 genomes, 218 marker sets)</option><option value="224372">Alcanivoracaceae (8 genomes, 350 marker sets)</option><option value="186823">Alicyclobacillaceae (9 genomes, 229 marker sets)</option><option value="72275">Alteromonadaceae (38 genomes, 296 marker sets)</option><option value="942">Anaplasmataceae (18 genomes, 212 marker sets)</option><option value="64898">Aquificaceae (10 genomes, 475 marker sets)</option><option value="2232">Archaeoglobaceae (5 genomes, 392 marker sets)</option><option value="255475">Aurantimonadaceae (4 genomes, 434 marker sets)</option><option value="186817">Bacillaceae (162 genomes, 155 marker sets)</option><option value="815">Bacteroidaceae (96 genomes, 282 marker sets)</option><option value="772">Bartonellaceae (29 genomes, 188 marker sets)</option><option value="213483">Bdellovibrionaceae (4 genomes, 331 marker sets)</option><option value="45404">Beijerinckiaceae (4 genomes, 488 marker sets)</option><option value="31953">Bifidobacteriaceae (77 genomes, 220 marker sets)</option><option value="39782">Blattabacteriaceae (6 genomes, 16 marker sets)</option><option value="143786">Brachyspiraceae (10 genomes, 458 marker sets)</option><option value="41294">Bradyrhizobiaceae (52 genomes, 276 marker sets)</option><option value="85019">Brevibacteriaceae (3 genomes, 259 marker sets)</option><option value="118882">Brucellaceae (94 genomes, 241 marker sets)</option><option value="119060">Burkholderiaceae (94 genomes, 224 marker sets)</option><option value="72294">Campylobacteraceae (66 genomes, 274 marker sets)</option><option value="868">Cardiobacteriaceae (3 genomes, 349 marker sets)</option><option value="186828">Carnobacteriaceae (7 genomes, 197 marker sets)</option><option value="76892">Caulobacteraceae (15 genomes, 366 marker sets)</option><option value="85016">Cellulomonadaceae (7 genomes, 260 marker sets)</option><option value="563835">Chitinophagaceae (8 genomes, 396 marker sets)</option><option value="809">Chlamydiaceae (59 genomes, 92 marker sets)</option><option value="191412">Chlorobiaceae (12 genomes, 333 marker sets)</option><option value="1106">Chloroflexaceae (7 genomes, 386 marker sets)</option><option value="1046">Chromatiaceae (14 genomes, 300 marker sets)</option><option value="31979">Clostridiaceae (10 genomes, 178 marker sets)</option><option value="539000">Clostridiales Family XVII. Incertae Sedis (5 genomes, 263 marker sets)</option><option value="267889">Colwelliaceae (3 genomes, 293 marker sets)</option><option value="80864">Comamonadaceae (41 genomes, 297 marker sets)</option><option value="320583">Conexibacteraceae (2 genomes, 347 marker sets)</option><option value="84107">Coriobacteriaceae (23 genomes, 155 marker sets)</option><option value="1653">Corynebacteriaceae (80 genomes, 243 marker sets)</option><option value="118968">Coxiellaceae (5 genomes, 146 marker sets)</option><option value="246874">Cryomorphaceae (3 genomes, 490 marker sets)</option><option value="563798">Cyclobacteriaceae (13 genomes, 342 marker sets)</option><option value="89373">Cytophagaceae (30 genomes, 278 marker sets)</option><option value="191394">Deferribacteraceae (5 genomes, 300 marker sets)</option><option value="1202464">Dehalococcoidaceae (5 genomes, 54 marker sets)</option><option value="183710">Deinococcaceae (16 genomes, 426 marker sets)</option><option value="85020">Dermabacteraceae (2 genomes, 242 marker sets)</option><option value="145357">Dermacoccaceae (3 genomes, 316 marker sets)</option><option value="85018">Dermatophilaceae (3 genomes, 346 marker sets)</option><option value="213119">Desulfobacteraceae (14 genomes, 216 marker sets)</option><option value="213121">Desulfobulbaceae (6 genomes, 290 marker sets)</option><option value="213117">Desulfohalobiaceae (3 genomes, 358 marker sets)</option><option value="213116">Desulfomicrobiaceae (2 genomes, 271 marker sets)</option><option value="194924">Desulfovibrionaceae (34 genomes, 270 marker sets)</option><option value="117942">Desulfurellaceae (4 genomes, 252 marker sets)</option><option value="558314">Desulfurobacteriaceae (2 genomes, 410 marker sets)</option><option value="2272">Desulfurococcaceae (12 genomes, 223 marker sets)</option><option value="203488">Dictyoglomaceae (2 genomes, 103 marker sets)</option><option value="72276">Ectothiorhodospiraceae (77 genomes, 294 marker sets)</option><option value="543">Enterobacteriaceae (262 genomes, 121 marker sets)</option><option value="81852">Enterococcaceae (55 genomes, 226 marker sets)</option><option value="33925">Entomoplasmataceae (8 genomes, 120 marker sets)</option><option value="128827">Erysipelotrichaceae (18 genomes, 159 marker sets)</option><option value="335929">Erythrobacteraceae (4 genomes, 266 marker sets)</option><option value="186806">Eubacteriaceae (22 genomes, 140 marker sets)</option><option value="267892">Ferrimonadaceae (4 genomes, 393 marker sets)</option><option value="200667">Flammeovirgaceae (5 genomes, 437 marker sets)</option><option value="49546">Flavobacteriaceae (115 genomes, 309 marker sets)</option><option value="34064">Francisellaceae (40 genomes, 238 marker sets)</option><option value="74712">Frankiaceae (12 genomes, 282 marker sets)</option><option value="203492">Fusobacteriaceae (23 genomes, 189 marker sets)</option><option value="213422">Geobacteraceae (11 genomes, 310 marker sets)</option><option value="85030">Geodermatophilaceae (5 genomes, 296 marker sets)</option><option value="85034">Glycomycetaceae (4 genomes, 375 marker sets)</option><option value="85026">Gordoniaceae (26 genomes, 298 marker sets)</option><option value="224379">Hahellaceae (3 genomes, 468 marker sets)</option><option value="972">Halanaerobiaceae (3 genomes, 192 marker sets)</option><option value="2236">Halobacteriaceae (58 genomes, 244 marker sets)</option><option value="53434">Halobacteroidaceae (4 genomes, 219 marker sets)</option><option value="28256">Halomonadaceae (15 genomes, 246 marker sets)</option><option value="72293">Helicobacteraceae (41 genomes, 302 marker sets)</option><option value="574976">Holophagaceae (2 genomes, 459 marker sets)</option><option value="206349">Hydrogenophilaceae (3 genomes, 209 marker sets)</option><option value="224027">Hydrogenothermaceae (6 genomes, 402 marker sets)</option><option value="45401">Hyphomicrobiaceae (12 genomes, 325 marker sets)</option><option value="69657">Hyphomonadaceae (10 genomes, 398 marker sets)</option><option value="267893">Idiomarinaceae (5 genomes, 247 marker sets)</option><option value="85021">Intrasporangiaceae (8 genomes, 328 marker sets)</option><option value="85022">Jonesiaceae (2 genomes, 191 marker sets)</option><option value="186803">Lachnospiraceae (86 genomes, 160 marker sets)</option><option value="33958">Lactobacillaceae (143 genomes, 153 marker sets)</option><option value="444">Legionellaceae (18 genomes, 290 marker sets)</option><option value="170">Leptospiraceae (5 genomes, 533 marker sets)</option><option value="1129771">Leptotrichiaceae (9 genomes, 239 marker sets)</option><option value="186820">Listeriaceae (25 genomes, 158 marker sets)</option><option value="580372">Mariprofundaceae (2 genomes, 184 marker sets)</option><option value="2159">Methanobacteriaceae (11 genomes, 255 marker sets)</option><option value="196117">Methanocaldococcaceae (7 genomes, 524 marker sets)</option><option value="570265">Methanocellaceae (3 genomes, 317 marker sets)</option><option value="2183">Methanococcaceae (9 genomes, 370 marker sets)</option><option value="88404">Methanocorpusculaceae (2 genomes, 135 marker sets)</option><option value="2194">Methanomicrobiaceae (4 genomes, 231 marker sets)</option><option value="1198451">Methanoregulaceae (4 genomes, 220 marker sets)</option><option value="143067">Methanosaetaceae (3 genomes, 354 marker sets)</option><option value="2206">Methanosarcinaceae (10 genomes, 256 marker sets)</option><option value="119045">Methylobacteriaceae (20 genomes, 308 marker sets)</option><option value="403">Methylococcaceae (15 genomes, 348 marker sets)</option><option value="31993">Methylocystaceae (11 genomes, 373 marker sets)</option><option value="32011">Methylophilaceae (14 genomes, 269 marker sets)</option><option value="85023">Microbacteriaceae (30 genomes, 190 marker sets)</option><option value="119859">Microchaetaceae (2 genomes, 646 marker sets)</option><option value="1268">Micrococcaceae (38 genomes, 217 marker sets)</option><option value="28056">Micromonosporaceae (55 genomes, 273 marker sets)</option><option value="468">Moraxellaceae (86 genomes, 365 marker sets)</option><option value="1762">Mycobacteriaceae (101 genomes, 290 marker sets)</option><option value="2092">Mycoplasmataceae (98 genomes, 127 marker sets)</option><option value="31">Myxococcaceae (6 genomes, 364 marker sets)</option><option value="85031">Nakamurellaceae (2 genomes, 427 marker sets)</option><option value="224467">Nautiliaceae (4 genomes, 351 marker sets)</option><option value="481">Neisseriaceae (69 genomes, 446 marker sets)</option><option value="206379">Nitrosomonadaceae (7 genomes, 314 marker sets)</option><option value="338190">Nitrosopumilaceae (2 genomes, 109 marker sets)</option><option value="189779">Nitrospiraceae (4 genomes, 379 marker sets)</option><option value="85025">Nocardiaceae (21 genomes, 269 marker sets)</option><option value="85015">Nocardioidaceae (11 genomes, 262 marker sets)</option><option value="83676">Nocardiopsaceae (7 genomes, 316 marker sets)</option><option value="1162">Nostocaceae (13 genomes, 536 marker sets)</option><option value="135620">Oceanospirillaceae (14 genomes, 305 marker sets)</option><option value="134623">Opitutaceae (3 genomes, 521 marker sets)</option><option value="75682">Oxalobacteraceae (16 genomes, 265 marker sets)</option><option value="186822">Paenibacillaceae (44 genomes, 188 marker sets)</option><option value="92713">Parachlamydiaceae (3 genomes, 331 marker sets)</option><option value="712">Pasteurellaceae (83 genomes, 440 marker sets)</option><option value="361606">Patulibacteraceae (2 genomes, 347 marker sets)</option><option value="1655514">Pelagibacteraceae (15 genomes, 142 marker sets)</option><option value="3024405">Pelobacteraceae (2 genomes, 487 marker sets)</option><option value="186807">Peptococcaceae (23 genomes, 153 marker sets)</option><option value="186804">Peptostreptococcaceae (184 genomes, 151 marker sets)</option><option value="69277">Phyllobacteriaceae (26 genomes, 258 marker sets)</option><option value="135616">Piscirickettsiaceae (16 genomes, 292 marker sets)</option><option value="126">Planctomycetaceae (10 genomes, 265 marker sets)</option><option value="186818">Planococcaceae (6 genomes, 233 marker sets)</option><option value="171551">Porphyromonadaceae (37 genomes, 310 marker sets)</option><option value="171552">Prevotellaceae (69 genomes, 298 marker sets)</option><option value="2881426">Prochlorococcaceae (18 genomes, 240 marker sets)</option><option value="85017">Promicromonosporaceae (6 genomes, 376 marker sets)</option><option value="31957">Propionibacteriaceae (40 genomes, 294 marker sets)</option><option value="267888">Pseudoalteromonadaceae (21 genomes, 307 marker sets)</option><option value="135621">Pseudomonadaceae (186 genomes, 302 marker sets)</option><option value="2070">Pseudonocardiaceae (32 genomes, 201 marker sets)</option><option value="267894">Psychromonadaceae (5 genomes, 326 marker sets)</option><option value="2307">Pyrodictiaceae (2 genomes, 346 marker sets)</option><option value="82115">Rhizobiaceae (85 genomes, 225 marker sets)</option><option value="31989">Rhodobacteraceae (91 genomes, 341 marker sets)</option><option value="119043">Rhodobiaceae (2 genomes, 424 marker sets)</option><option value="75787">Rhodocyclaceae (25 genomes, 269 marker sets)</option><option value="41295">Rhodospirillaceae (26 genomes, 163 marker sets)</option><option value="563843">Rhodothermaceae (5 genomes, 466 marker sets)</option><option value="775">Rickettsiaceae (46 genomes, 196 marker sets)</option><option value="171550">Rikenellaceae (6 genomes, 386 marker sets)</option><option value="1185">Rivulariaceae (3 genomes, 642 marker sets)</option><option value="84997">Rubrobacteraceae (2 genomes, 269 marker sets)</option><option value="216572">Ruminococcaceae (20 genomes, 161 marker sets)</option><option value="89374">Saprospiraceae (5 genomes, 479 marker sets)</option><option value="267890">Shewanellaceae (26 genomes, 339 marker sets)</option><option value="568386">Sinobacteraceae (4 genomes, 398 marker sets)</option><option value="320599">Solirubrobacteraceae (2 genomes, 398 marker sets)</option><option value="84566">Sphingobacteriaceae (11 genomes, 344 marker sets)</option><option value="41297">Sphingomonadaceae (27 genomes, 275 marker sets)</option><option value="137">Spirochaetaceae (56 genomes, 124 marker sets)</option><option value="186821">Sporolactobacillaceae (2 genomes, 320 marker sets)</option><option value="90964">Staphylococcaceae (64 genomes, 181 marker sets)</option><option value="1300">Streptococcaceae (240 genomes, 282 marker sets)</option><option value="2062">Streptomycetaceae (58 genomes, 264 marker sets)</option><option value="2004">Streptosporangiaceae (2 genomes, 473 marker sets)</option><option value="83763">Succinivibrionaceae (6 genomes, 317 marker sets)</option><option value="118883">Sulfolobaceae (19 genomes, 149 marker sets)</option><option value="995019">Sutterellaceae (4 genomes, 261 marker sets)</option><option value="649777">Synergistaceae (13 genomes, 160 marker sets)</option><option value="68298">Syntrophomonadaceae (3 genomes, 271 marker sets)</option><option value="188786">Thermaceae (23 genomes, 331 marker sets)</option><option value="186824">Thermoactinomycetaceae (2 genomes, 387 marker sets)</option><option value="186814">Thermoanaerobacteraceae (24 genomes, 193 marker sets)</option><option value="543371">Thermoanaerobacterales Family III. Incertae Sedis (16 genomes, 251 marker sets)</option><option value="2259">Thermococcaceae (16 genomes, 315 marker sets)</option><option value="188711">Thermodesulfobacteriaceae (5 genomes, 440 marker sets)</option><option value="227387">Thermodesulfobiaceae (3 genomes, 284 marker sets)</option><option value="2012">Thermomonosporaceae (4 genomes, 346 marker sets)</option><option value="46659">Thermoplasmataceae (2 genomes, 167 marker sets)</option><option value="2267">Thermoproteaceae (12 genomes, 333 marker sets)</option><option value="188709">Thermotogaceae (14 genomes, 267 marker sets)</option><option value="135617">Thiotrichaceae (6 genomes, 473 marker sets)</option><option value="31977">Veillonellaceae (57 genomes, 171 marker sets)</option><option value="203557">Verrucomicrobiaceae (5 genomes, 342 marker sets)</option><option value="641">Vibrionaceae (80 genomes, 367 marker sets)</option><option value="335928">Xanthobacteraceae (9 genomes, 433 marker sets)</option><option value="32033">Xanthomonadaceae (58 genomes, 311 marker sets)</option></select></div> <div id="div_genus"><select class="form-control chosen-select" id="field_genus" name="field_genus"><option value="434">Acetobacter (11 genomes, 392 marker sets)</option><option value="2147">Acholeplasma (7 genomes, 151 marker sets)</option><option value="222">Achromobacter (5 genomes, 427 marker sets)</option><option value="904">Acidaminococcus (5 genomes, 256 marker sets)</option><option value="105850">Acidilobus (2 genomes, 144 marker sets)</option><option value="522">Acidiphilium (3 genomes, 339 marker sets)</option><option value="119977">Acidithiobacillus (5 genomes, 200 marker sets)</option><option value="33973">Acidobacterium (2 genomes, 582 marker sets)</option><option value="12916">Acidovorax (9 genomes, 335 marker sets)</option><option value="379546">Aciduliprofundum (2 genomes, 130 marker sets)</option><option value="469">Acinetobacter (66 genomes, 281 marker sets)</option><option value="713">Actinobacillus (18 genomes, 589 marker sets)</option><option value="76833">Actinobaculum (5 genomes, 222 marker sets)</option><option value="1988">Actinomadura (3 genomes, 376 marker sets)</option><option value="1654">Actinomyces (27 genomes, 214 marker sets)</option><option value="1865">Actinoplanes (3 genomes, 394 marker sets)</option><option value="1849">Actinopolyspora (3 genomes, 433 marker sets)</option><option value="153265">Aequorivita (2 genomes, 283 marker sets)</option><option value="1375">Aerococcus (2 genomes, 247 marker sets)</option><option value="642">Aeromonas (12 genomes, 463 marker sets)</option><option value="416916">Aggregatibacter (13 genomes, 357 marker sets)</option><option value="357">Agrobacterium (12 genomes, 379 marker sets)</option><option value="33877">Agromyces (2 genomes, 287 marker sets)</option><option value="152180">Ahrensia (2 genomes, 422 marker sets)</option><option value="507">Alcaligenes (2 genomes, 235 marker sets)</option><option value="59753">Alcanivorax (6 genomes, 317 marker sets)</option><option value="246875">Algoriphagus (5 genomes, 361 marker sets)</option><option value="882379">Aliagarivorans (2 genomes, 251 marker sets)</option><option value="201096">Alicycliphilus (2 genomes, 258 marker sets)</option><option value="29330">Alicyclobacillus (8 genomes, 240 marker sets)</option><option value="111142">Alishewanella (2 genomes, 232 marker sets)</option><option value="239759">Alistipes (5 genomes, 335 marker sets)</option><option value="114627">Alkaliphilus (2 genomes, 326 marker sets)</option><option value="419014">Alloscardovia (2 genomes, 116 marker sets)</option><option value="226">Alteromonas (6 genomes, 314 marker sets)</option><option value="81466">Aminobacterium (2 genomes, 145 marker sets)</option><option value="1813">Amycolatopsis (12 genomes, 302 marker sets)</option><option value="1163">Anabaena (5 genomes, 584 marker sets)</option><option value="165779">Anaerococcus (6 genomes, 181 marker sets)</option><option value="161492">Anaeromyxobacter (4 genomes, 375 marker sets)</option><option value="768">Anaplasma (2 genomes, 127 marker sets)</option><option value="150247">Anoxybacillus (5 genomes, 212 marker sets)</option><option value="290174">Aquimarina (2 genomes, 373 marker sets)</option><option value="2233">Archaeoglobus (4 genomes, 415 marker sets)</option><option value="28196">Arcobacter (8 genomes, 234 marker sets)</option><option value="178469">Arenibacter (2 genomes, 269 marker sets)</option><option value="637">Arsenophonus (4 genomes, 164 marker sets)</option><option value="1663">Arthrobacter (25 genomes, 190 marker sets)</option><option value="35823">Arthrospira (2 genomes, 419 marker sets)</option><option value="76890">Asticcacaulis (3 genomes, 409 marker sets)</option><option value="1380">Atopobium (8 genomes, 194 marker sets)</option><option value="182269">Aurantimonas (2 genomes, 356 marker sets)</option><option value="12960">Azoarcus (2 genomes, 376 marker sets)</option><option value="6">Azorhizobium (2 genomes, 390 marker sets)</option><option value="146937">Azospira (2 genomes, 218 marker sets)</option><option value="191">Azospirillum (3 genomes, 549 marker sets)</option><option value="352">Azotobacter (3 genomes, 269 marker sets)</option><option value="1386">Bacillus (122 genomes, 170 marker sets)</option><option value="816">Bacteroides (96 genomes, 282 marker sets)</option><option value="397864">Barnesiella (2 genomes, 230 marker sets)</option><option value="773">Bartonella (29 genomes, 188 marker sets)</option><option value="958">Bdellovibrio (3 genomes, 296 marker sets)</option><option value="1678">Bifidobacterium (57 genomes, 204 marker sets)</option><option value="38501">Blastococcus (2 genomes, 317 marker sets)</option><option value="34098">Blattabacterium (6 genomes, 16 marker sets)</option><option value="572511">Blautia (7 genomes, 291 marker sets)</option><option value="517">Bordetella (9 genomes, 277 marker sets)</option><option value="138">Borrelia (17 genomes, 66 marker sets)</option><option value="29521">Brachyspira (10 genomes, 458 marker sets)</option><option value="374">Bradyrhizobium (36 genomes, 337 marker sets)</option><option value="55080">Brevibacillus (4 genomes, 391 marker sets)</option><option value="1696">Brevibacterium (3 genomes, 259 marker sets)</option><option value="41275">Brevundimonas (6 genomes, 452 marker sets)</option><option value="234">Brucella (90 genomes, 236 marker sets)</option><option value="32199">Buchnera (10 genomes, 35 marker sets)</option><option value="32008">Burkholderia (66 genomes, 235 marker sets)</option><option value="574697">Butyricimonas (2 genomes, 296 marker sets)</option><option value="830">Butyrivibrio (31 genomes, 245 marker sets)</option><option value="44000">Caldicellulosiruptor (11 genomes, 169 marker sets)</option><option value="1186">Calothrix (2 genomes, 726 marker sets)</option><option value="194">Campylobacter (55 genomes, 263 marker sets)</option><option value="49082">Candidatus Arthromitus (5 genomes, 153 marker sets)</option><option value="34019">Candidatus Liberibacter (3 genomes, 141 marker sets)</option><option value="198251">Candidatus Pelagibacter (12 genomes, 144 marker sets)</option><option value="33926">Candidatus Phytoplasma (4 genomes, 86 marker sets)</option><option value="1016">Capnocytophaga (15 genomes, 514 marker sets)</option><option value="129957">Carboxydothermus (2 genomes, 139 marker sets)</option><option value="2717">Cardiobacterium (2 genomes, 474 marker sets)</option><option value="75">Caulobacter (4 genomes, 375 marker sets)</option><option value="1707">Cellulomonas (6 genomes, 257 marker sets)</option><option value="104264">Cellulophaga (2 genomes, 357 marker sets)</option><option value="551208">Chitinilyticum (2 genomes, 343 marker sets)</option><option value="810">Chlamydia (43 genomes, 88 marker sets)</option><option value="256319">Chlorobaculum (2 genomes, 186 marker sets)</option><option value="1091">Chlorobium (6 genomes, 277 marker sets)</option><option value="1107">Chloroflexus (5 genomes, 449 marker sets)</option><option value="54298">Chroococcidiopsis (2 genomes, 811 marker sets)</option><option value="59732">Chryseobacterium (6 genomes, 414 marker sets)</option><option value="282682">Citreicella (2 genomes, 390 marker sets)</option><option value="544">Citrobacter (8 genomes, 347 marker sets)</option><option value="72173">Citromicrobium (2 genomes, 186 marker sets)</option><option value="1573">Clavibacter (2 genomes, 228 marker sets)</option><option value="1485">Clostridium (180 genomes, 161 marker sets)</option><option value="329857">Cohnella (3 genomes, 306 marker sets)</option><option value="102106">Collinsella (2 genomes, 315 marker sets)</option><option value="28228">Colwellia (3 genomes, 293 marker sets)</option><option value="283">Comamonas (5 genomes, 399 marker sets)</option><option value="1079922">Commensalibacter (2 genomes, 137 marker sets)</option><option value="334107">Conchiformibius (2 genomes, 317 marker sets)</option><option value="100883">Coprobacillus (3 genomes, 331 marker sets)</option><option value="33042">Coprococcus (3 genomes, 260 marker sets)</option><option value="68335">Coprothermobacter (2 genomes, 70 marker sets)</option><option value="1716">Corynebacterium (80 genomes, 243 marker sets)</option><option value="776">Coxiella (5 genomes, 146 marker sets)</option><option value="413496">Cronobacter (4 genomes, 338 marker sets)</option><option value="106589">Cupriavidus (8 genomes, 352 marker sets)</option><option value="2034">Curtobacterium (2 genomes, 330 marker sets)</option><option value="281915">Curvibacter (2 genomes, 367 marker sets)</option><option value="102234">Cyanobacterium (4 genomes, 477 marker sets)</option><option value="167375">Cyanobium (2 genomes, 277 marker sets)</option><option value="43988">Cyanothece (8 genomes, 653 marker sets)</option><option value="34067">Cycloclasticus (2 genomes, 85 marker sets)</option><option value="978">Cytophaga (3 genomes, 464 marker sets)</option><option value="73029">Dechloromonas (4 genomes, 276 marker sets)</option><option value="56112">Dehalobacter (3 genomes, 157 marker sets)</option><option value="61434">Dehalococcoides (5 genomes, 54 marker sets)</option><option value="1298">Deinococcus (16 genomes, 426 marker sets)</option><option value="80865">Delftia (3 genomes, 409 marker sets)</option><option value="218207">Desulfatibacillum (2 genomes, 388 marker sets)</option><option value="2295">Desulfobacterium (3 genomes, 365 marker sets)</option><option value="893">Desulfobulbus (4 genomes, 276 marker sets)</option><option value="898">Desulfomicrobium (2 genomes, 271 marker sets)</option><option value="79206">Desulfosporosinus (4 genomes, 249 marker sets)</option><option value="115780">Desulfotignum (2 genomes, 274 marker sets)</option><option value="1562">Desulfotomaculum (9 genomes, 214 marker sets)</option><option value="872">Desulfovibrio (31 genomes, 224 marker sets)</option><option value="2273">Desulfurococcus (4 genomes, 129 marker sets)</option><option value="39948">Dialister (4 genomes, 210 marker sets)</option><option value="204037">Dickeya (4 genomes, 311 marker sets)</option><option value="13">Dictyoglomus (2 genomes, 103 marker sets)</option><option value="189330">Dorea (4 genomes, 261 marker sets)</option><option value="120831">Dyadobacter (4 genomes, 319 marker sets)</option><option value="156973">Dysgonomonas (3 genomes, 480 marker sets)</option><option value="390846">Echinicola (2 genomes, 350 marker sets)</option><option value="1051">Ectothiorhodospira (2 genomes, 274 marker sets)</option><option value="635">Edwardsiella (2 genomes, 174 marker sets)</option><option value="84111">Eggerthella (4 genomes, 301 marker sets)</option><option value="943">Ehrlichia (6 genomes, 87 marker sets)</option><option value="308865">Elizabethkingia (3 genomes, 240 marker sets)</option><option value="106591">Ensifer (26 genomes, 323 marker sets)</option><option value="547">Enterobacter (13 genomes, 370 marker sets)</option><option value="1350">Enterococcus (51 genomes, 259 marker sets)</option><option value="188143">Enterovibrio (2 genomes, 389 marker sets)</option><option value="46238">Entomoplasma (3 genomes, 109 marker sets)</option><option value="171412">Eremococcus (2 genomes, 109 marker sets)</option><option value="551">Erwinia (8 genomes, 280 marker sets)</option><option value="1647">Erysipelothrix (2 genomes, 95 marker sets)</option><option value="1041">Erythrobacter (3 genomes, 256 marker sets)</option><option value="561">Escherichia (27 genomes, 320 marker sets)</option><option value="1730">Eubacterium (18 genomes, 157 marker sets)</option><option value="33986">Exiguobacterium (11 genomes, 263 marker sets)</option><option value="66831">Facklamia (5 genomes, 184 marker sets)</option><option value="216851">Faecalibacterium (2 genomes, 264 marker sets)</option><option value="482136">Fangia (2 genomes, 144 marker sets)</option><option value="44011">Ferrimonas (4 genomes, 393 marker sets)</option><option value="150022">Finegoldia (5 genomes, 111 marker sets)</option><option value="1190">Fischerella (4 genomes, 585 marker sets)</option><option value="237">Flavobacterium (20 genomes, 320 marker sets)</option><option value="992">Flexibacter (3 genomes, 663 marker sets)</option><option value="262">Francisella (40 genomes, 238 marker sets)</option><option value="1854">Frankia (11 genomes, 285 marker sets)</option><option value="848">Fusobacterium (21 genomes, 210 marker sets)</option><option value="155493">Gallibacterium (2 genomes, 168 marker sets)</option><option value="2701">Gardnerella (14 genomes, 237 marker sets)</option><option value="1378">Gemella (5 genomes, 169 marker sets)</option><option value="129337">Geobacillus (15 genomes, 228 marker sets)</option><option value="28231">Geobacter (10 genomes, 332 marker sets)</option><option value="244698">Gillisia (2 genomes, 276 marker sets)</option><option value="89404">Glaciecola (9 genomes, 369 marker sets)</option><option value="102231">Gloeocapsa (2 genomes, 740 marker sets)</option><option value="89583">Gluconacetobacter (4 genomes, 240 marker sets)</option><option value="441">Gluconobacter (3 genomes, 207 marker sets)</option><option value="58113">Glycomyces (2 genomes, 326 marker sets)</option><option value="2053">Gordonia (26 genomes, 298 marker sets)</option><option value="292691">Gramella (3 genomes, 213 marker sets)</option><option value="117563">Granulicatella (2 genomes, 249 marker sets)</option><option value="940557">Granulicella (2 genomes, 507 marker sets)</option><option value="724">Haemophilus (35 genomes, 480 marker sets)</option><option value="158481">Hahella (2 genomes, 475 marker sets)</option><option value="332246">Halalkalicoccus (2 genomes, 212 marker sets)</option><option value="2330">Halanaerobium (2 genomes, 186 marker sets)</option><option value="475794">Haliea (2 genomes, 329 marker sets)</option><option value="2237">Haloarcula (7 genomes, 250 marker sets)</option><option value="45667">Halobacillus (3 genomes, 292 marker sets)</option><option value="2239">Halobacterium (3 genomes, 224 marker sets)</option><option value="203193">Halobiforma (2 genomes, 320 marker sets)</option><option value="2249">Halococcus (2 genomes, 347 marker sets)</option><option value="2251">Haloferax (10 genomes, 229 marker sets)</option><option value="203135">Halomicrobium (2 genomes, 233 marker sets)</option><option value="2745">Halomonas (11 genomes, 268 marker sets)</option><option value="293431">Haloquadratum (3 genomes, 192 marker sets)</option><option value="56688">Halorubrum (4 genomes, 295 marker sets)</option><option value="121871">Haloterrigena (2 genomes, 332 marker sets)</option><option value="209">Helicobacter (33 genomes, 276 marker sets)</option><option value="963">Herbaspirillum (3 genomes, 341 marker sets)</option><option value="84404">Hippea (3 genomes, 157 marker sets)</option><option value="2723">Hirschia (2 genomes, 222 marker sets)</option><option value="214906">Histophilus (2 genomes, 98 marker sets)</option><option value="939">Hydrogenobacter (2 genomes, 52 marker sets)</option><option value="168657">Hydrogenobaculum (5 genomes, 63 marker sets)</option><option value="89966">Hymenobacter (3 genomes, 370 marker sets)</option><option value="81">Hyphomicrobium (7 genomes, 312 marker sets)</option><option value="135575">Idiomarina (5 genomes, 247 marker sets)</option><option value="254250">Isoptericola (2 genomes, 168 marker sets)</option><option value="53457">Janibacter (2 genomes, 385 marker sets)</option><option value="29580">Janthinobacterium (4 genomes, 351 marker sets)</option><option value="227979">Jeotgalicoccus (2 genomes, 142 marker sets)</option><option value="43673">Jonesia (2 genomes, 191 marker sets)</option><option value="428711">Jonquetella (2 genomes, 78 marker sets)</option><option value="166953">Kaistia (2 genomes, 278 marker sets)</option><option value="1279388">Kandleria (3 genomes, 154 marker sets)</option><option value="261963">Kangiella (2 genomes, 165 marker sets)</option><option value="32257">Kingella (3 genomes, 614 marker sets)</option><option value="570">Klebsiella (29 genomes, 348 marker sets)</option><option value="478070">Labrenzia (2 genomes, 424 marker sets)</option><option value="140625">Lachnobacterium (2 genomes, 173 marker sets)</option><option value="28050">Lachnospira (3 genomes, 196 marker sets)</option><option value="1578">Lactobacillus (135 genomes, 155 marker sets)</option><option value="1357">Lactococcus (14 genomes, 238 marker sets)</option><option value="168470">Laribacter (2 genomes, 150 marker sets)</option><option value="283735">Leeuwenhoekiella (2 genomes, 263 marker sets)</option><option value="445">Legionella (18 genomes, 290 marker sets)</option><option value="110932">Leifsonia (2 genomes, 212 marker sets)</option><option value="191028">Leisingera (3 genomes, 365 marker sets)</option><option value="47251">Leptolyngbya (3 genomes, 660 marker sets)</option><option value="171">Leptospira (4 genomes, 280 marker sets)</option><option value="32067">Leptotrichia (7 genomes, 335 marker sets)</option><option value="55968">Leucobacter (2 genomes, 255 marker sets)</option><option value="1243">Leuconostoc (15 genomes, 181 marker sets)</option><option value="70994">Lewinella (2 genomes, 736 marker sets)</option><option value="1637">Listeria (24 genomes, 165 marker sets)</option><option value="245186">Loktanella (5 genomes, 308 marker sets)</option><option value="83614">Luteimonas (2 genomes, 311 marker sets)</option><option value="28073">Lyngbya (2 genomes, 753 marker sets)</option><option value="400634">Lysinibacillus (3 genomes, 323 marker sets)</option><option value="68">Lysobacter (2 genomes, 265 marker sets)</option><option value="13134">Magnetospirillum (3 genomes, 429 marker sets)</option><option value="75984">Mannheimia (4 genomes, 245 marker sets)</option><option value="252356">Maribacter (3 genomes, 290 marker sets)</option><option value="2742">Marinobacter (8 genomes, 273 marker sets)</option><option value="48075">Marinobacterium (3 genomes, 339 marker sets)</option><option value="28253">Marinomonas (4 genomes, 320 marker sets)</option><option value="377315">Mariprofundus (2 genomes, 184 marker sets)</option><option value="404235">Maritimibacter (2 genomes, 421 marker sets)</option><option value="149698">Massilia (3 genomes, 402 marker sets)</option><option value="158846">Megamonas (3 genomes, 288 marker sets)</option><option value="906">Megasphaera (7 genomes, 211 marker sets)</option><option value="65551">Meiothermus (7 genomes, 456 marker sets)</option><option value="46239">Mesoplasma (5 genomes, 104 marker sets)</option><option value="68287">Mesorhizobium (20 genomes, 381 marker sets)</option><option value="41980">Metallosphaera (3 genomes, 177 marker sets)</option><option value="2160">Methanobacterium (3 genomes, 214 marker sets)</option><option value="2172">Methanobrevibacter (5 genomes, 267 marker sets)</option><option value="196118">Methanocaldococcus (5 genomes, 537 marker sets)</option><option value="570266">Methanocella (3 genomes, 317 marker sets)</option><option value="2184">Methanococcus (7 genomes, 377 marker sets)</option><option value="2192">Methanocorpusculum (2 genomes, 135 marker sets)</option><option value="2220">Methanolobus (2 genomes, 240 marker sets)</option><option value="2314">Methanoplanus (2 genomes, 217 marker sets)</option><option value="2222">Methanosaeta (3 genomes, 354 marker sets)</option><option value="2207">Methanosarcina (3 genomes, 306 marker sets)</option><option value="145260">Methanothermobacter (2 genomes, 76 marker sets)</option><option value="155862">Methanothermococcus (2 genomes, 366 marker sets)</option><option value="196119">Methanotorris (2 genomes, 279 marker sets)</option><option value="429">Methylobacter (2 genomes, 436 marker sets)</option><option value="407">Methylobacterium (16 genomes, 394 marker sets)</option><option value="413">Methylococcus (2 genomes, 188 marker sets)</option><option value="133">Methylocystis (3 genomes, 334 marker sets)</option><option value="39773">Methylomicrobium (2 genomes, 550 marker sets)</option><option value="416">Methylomonas (4 genomes, 423 marker sets)</option><option value="40222">Methylophaga (4 genomes, 219 marker sets)</option><option value="16">Methylophilus (4 genomes, 180 marker sets)</option><option value="61653">Methylopila (2 genomes, 482 marker sets)</option><option value="160800">Methylosarcina (2 genomes, 498 marker sets)</option><option value="425">Methylosinus (3 genomes, 501 marker sets)</option><option value="359407">Methylotenera (6 genomes, 217 marker sets)</option><option value="378210">Methyloversatilis (6 genomes, 270 marker sets)</option><option value="81682">Methylovorus (2 genomes, 132 marker sets)</option><option value="33882">Microbacterium (11 genomes, 280 marker sets)</option><option value="44471">Microcoleus (2 genomes, 754 marker sets)</option><option value="1873">Micromonospora (5 genomes, 349 marker sets)</option><option value="186650">Microvirga (2 genomes, 353 marker sets)</option><option value="2050">Mobiluncus (8 genomes, 222 marker sets)</option><option value="44260">Moorella (2 genomes, 231 marker sets)</option><option value="475">Moraxella (10 genomes, 523 marker sets)</option><option value="581">Morganella (2 genomes, 217 marker sets)</option><option value="1763">Mycobacterium (100 genomes, 300 marker sets)</option><option value="2093">Mycoplasma (83 genomes, 133 marker sets)</option><option value="76831">Myroides (7 genomes, 335 marker sets)</option><option value="63742">Natrialba (3 genomes, 277 marker sets)</option><option value="88723">Natrinema (3 genomes, 297 marker sets)</option><option value="2256">Natronobacterium (2 genomes, 271 marker sets)</option><option value="134813">Natronorubrum (2 genomes, 332 marker sets)</option><option value="482">Neisseria (47 genomes, 501 marker sets)</option><option value="33993">Neorickettsia (2 genomes, 16 marker sets)</option><option value="57494">Nesterenkonia (2 genomes, 286 marker sets)</option><option value="379899">Niabella (2 genomes, 403 marker sets)</option><option value="390876">Nisaea (2 genomes, 423 marker sets)</option><option value="245876">Nitratireductor (3 genomes, 283 marker sets)</option><option value="269258">Nitratiruptor (2 genomes, 138 marker sets)</option><option value="911">Nitrobacter (3 genomes, 239 marker sets)</option><option value="1227">Nitrosococcus (2 genomes, 283 marker sets)</option><option value="914">Nitrosomonas (5 genomes, 324 marker sets)</option><option value="35798">Nitrosospira (2 genomes, 242 marker sets)</option><option value="1817">Nocardia (6 genomes, 372 marker sets)</option><option value="1839">Nocardioides (8 genomes, 299 marker sets)</option><option value="2013">Nocardiopsis (4 genomes, 327 marker sets)</option><option value="1177">Nostoc (5 genomes, 585 marker sets)</option><option value="165696">Novosphingobium (5 genomes, 296 marker sets)</option><option value="153232">Oceanicaulis (2 genomes, 175 marker sets)</option><option value="252301">Oceanicola (4 genomes, 439 marker sets)</option><option value="129577">Oceanimonas (3 genomes, 267 marker sets)</option><option value="182709">Oceanobacillus (2 genomes, 211 marker sets)</option><option value="965">Oceanospirillum (2 genomes, 371 marker sets)</option><option value="528">Ochrobactrum (4 genomes, 260 marker sets)</option><option value="53945">Octadecabacter (2 genomes, 284 marker sets)</option><option value="283168">Odoribacter (2 genomes, 350 marker sets)</option><option value="46254">Oenococcus (13 genomes, 136 marker sets)</option><option value="90243">Oligella (2 genomes, 186 marker sets)</option><option value="1033">Oligotropha (2 genomes, 192 marker sets)</option><option value="336276">Olleya (2 genomes, 249 marker sets)</option><option value="133925">Olsenella (2 genomes, 213 marker sets)</option><option value="265975">Oribacterium (5 genomes, 211 marker sets)</option><option value="69474">Orientia (2 genomes, 94 marker sets)</option><option value="28250">Ornithobacterium (2 genomes, 138 marker sets)</option><option value="1158">Oscillatoria (3 genomes, 673 marker sets)</option><option value="846">Oxalobacter (2 genomes, 133 marker sets)</option><option value="44249">Paenibacillus (33 genomes, 180 marker sets)</option><option value="53335">Pantoea (10 genomes, 316 marker sets)</option><option value="375288">Parabacteroides (6 genomes, 371 marker sets)</option><option value="83551">Parachlamydia (2 genomes, 203 marker sets)</option><option value="265">Paracoccus (8 genomes, 340 marker sets)</option><option value="577309">Paraprevotella (2 genomes, 229 marker sets)</option><option value="196082">Parascardovia (2 genomes, 87 marker sets)</option><option value="745">Pasteurella (8 genomes, 458 marker sets)</option><option value="361607">Patulibacter (2 genomes, 347 marker sets)</option><option value="122277">Pectobacterium (5 genomes, 291 marker sets)</option><option value="1253">Pediococcus (7 genomes, 140 marker sets)</option><option value="84567">Pedobacter (5 genomes, 322 marker sets)</option><option value="18">Pelobacter (2 genomes, 487 marker sets)</option><option value="1099">Pelodictyon (2 genomes, 227 marker sets)</option><option value="365348">Pelosinus (3 genomes, 333 marker sets)</option><option value="162289">Peptoniphilus (7 genomes, 231 marker sets)</option><option value="1257">Peptostreptococcus (3 genomes, 240 marker sets)</option><option value="182899">Persephonella (3 genomes, 256 marker sets)</option><option value="302485">Phaeobacter (8 genomes, 310 marker sets)</option><option value="657">Photobacterium (6 genomes, 326 marker sets)</option><option value="29487">Photorhabdus (3 genomes, 281 marker sets)</option><option value="118">Planctomyces (3 genomes, 552 marker sets)</option><option value="54304">Planktothrix (6 genomes, 425 marker sets)</option><option value="1372">Planococcus (2 genomes, 253 marker sets)</option><option value="261933">Pleomorphomonas (2 genomes, 316 marker sets)</option><option value="44474">Pleurocapsa (2 genomes, 783 marker sets)</option><option value="52959">Polaribacter (3 genomes, 301 marker sets)</option><option value="52972">Polaromonas (4 genomes, 336 marker sets)</option><option value="44013">Polynucleobacter (3 genomes, 106 marker sets)</option><option value="289201">Pontibacillus (2 genomes, 324 marker sets)</option><option value="323449">Pontibacter (2 genomes, 379 marker sets)</option><option value="836">Porphyromonas (18 genomes, 346 marker sets)</option><option value="838">Prevotella (65 genomes, 281 marker sets)</option><option value="1218">Prochlorococcus (18 genomes, 240 marker sets)</option><option value="43676">Promicromonospora (2 genomes, 525 marker sets)</option><option value="1743">Propionibacterium (35 genomes, 302 marker sets)</option><option value="203133">Propionimicrobium (2 genomes, 105 marker sets)</option><option value="583">Proteus (2 genomes, 231 marker sets)</option><option value="586">Providencia (6 genomes, 302 marker sets)</option><option value="1152">Pseudanabaena (2 genomes, 781 marker sets)</option><option value="53246">Pseudoalteromonas (20 genomes, 396 marker sets)</option><option value="46205">Pseudobutyrivibrio (5 genomes, 228 marker sets)</option><option value="255204">Pseudoclavibacter (2 genomes, 298 marker sets)</option><option value="568394">Pseudogulbenkiania (3 genomes, 267 marker sets)</option><option value="286">Pseudomonas (182 genomes, 312 marker sets)</option><option value="1847">Pseudonocardia (4 genomes, 343 marker sets)</option><option value="258255">Pseudovibrio (2 genomes, 338 marker sets)</option><option value="83618">Pseudoxanthomonas (5 genomes, 369 marker sets)</option><option value="497">Psychrobacter (6 genomes, 372 marker sets)</option><option value="83612">Psychroflexus (2 genomes, 211 marker sets)</option><option value="67572">Psychromonas (5 genomes, 326 marker sets)</option><option value="2276">Pyrobaculum (6 genomes, 217 marker sets)</option><option value="2260">Pyrococcus (6 genomes, 266 marker sets)</option><option value="34037">Rahnella (2 genomes, 296 marker sets)</option><option value="48736">Ralstonia (14 genomes, 294 marker sets)</option><option value="67575">Rheinheimera (4 genomes, 378 marker sets)</option><option value="379">Rhizobium (40 genomes, 345 marker sets)</option><option value="75309">Rhodanobacter (3 genomes, 246 marker sets)</option><option value="1060">Rhodobacter (8 genomes, 372 marker sets)</option><option value="1827">Rhodococcus (14 genomes, 302 marker sets)</option><option value="336827">Rhodonellum (2 genomes, 372 marker sets)</option><option value="265488">Rhodopirellula (3 genomes, 661 marker sets)</option><option value="1073">Rhodopseudomonas (7 genomes, 388 marker sets)</option><option value="1081">Rhodospirillum (3 genomes, 514 marker sets)</option><option value="29548">Rhodothermus (3 genomes, 216 marker sets)</option><option value="780">Rickettsia (43 genomes, 110 marker sets)</option><option value="34084">Riemerella (6 genomes, 396 marker sets)</option><option value="841">Roseburia (2 genomes, 303 marker sets)</option><option value="120961">Roseiflexus (2 genomes, 441 marker sets)</option><option value="2433">Roseobacter (7 genomes, 348 marker sets)</option><option value="125216">Roseomonas (2 genomes, 318 marker sets)</option><option value="74030">Roseovarius (3 genomes, 423 marker sets)</option><option value="32207">Rothia (6 genomes, 217 marker sets)</option><option value="28067">Rubrivivax (3 genomes, 343 marker sets)</option><option value="42255">Rubrobacter (2 genomes, 269 marker sets)</option><option value="97050">Ruegeria (7 genomes, 358 marker sets)</option><option value="1263">Ruminococcus (13 genomes, 242 marker sets)</option><option value="105">Runella (3 genomes, 525 marker sets)</option><option value="456492">Saccharibacillus (2 genomes, 331 marker sets)</option><option value="1851">Saccharomonospora (8 genomes, 337 marker sets)</option><option value="45669">Salinicoccus (2 genomes, 206 marker sets)</option><option value="561367">Salinimicrobium (2 genomes, 260 marker sets)</option><option value="168694">Salinispora (45 genomes, 284 marker sets)</option><option value="590">Salmonella (21 genomes, 266 marker sets)</option><option value="1007">Saprospira (2 genomes, 326 marker sets)</option><option value="504481">Sediminibacterium (3 genomes, 328 marker sets)</option><option value="970">Selenomonas (21 genomes, 294 marker sets)</option><option value="613">Serratia (13 genomes, 293 marker sets)</option><option value="22">Shewanella (26 genomes, 339 marker sets)</option><option value="620">Shigella (34 genomes, 348 marker sets)</option><option value="84108">Slackia (4 genomes, 193 marker sets)</option><option value="207599">Solirubrobacter (2 genomes, 398 marker sets)</option><option value="123375">Solobacterium (2 genomes, 170 marker sets)</option><option value="399320">Sphaerochaeta (3 genomes, 216 marker sets)</option><option value="28453">Sphingobacterium (2 genomes, 521 marker sets)</option><option value="165695">Sphingobium (3 genomes, 403 marker sets)</option><option value="13687">Sphingomonas (11 genomes, 351 marker sets)</option><option value="165697">Sphingopyxis (2 genomes, 382 marker sets)</option><option value="146">Spirochaeta (8 genomes, 211 marker sets)</option><option value="107">Spirosoma (4 genomes, 460 marker sets)</option><option value="1569">Sporosarcina (3 genomes, 269 marker sets)</option><option value="1279">Staphylococcus (60 genomes, 178 marker sets)</option><option value="2279">Staphylothermus (2 genomes, 104 marker sets)</option><option value="40323">Stenotrophomonas (10 genomes, 380 marker sets)</option><option value="1301">Streptococcus (226 genomes, 259 marker sets)</option><option value="1883">Streptomyces (58 genomes, 264 marker sets)</option><option value="60136">Sulfitobacter (4 genomes, 294 marker sets)</option><option value="28033">Sulfobacillus (3 genomes, 278 marker sets)</option><option value="2284">Sulfolobus (15 genomes, 152 marker sets)</option><option value="212790">Sulfurihydrogenibium (3 genomes, 341 marker sets)</option><option value="202746">Sulfurimonas (3 genomes, 245 marker sets)</option><option value="57665">Sulfurospirillum (3 genomes, 240 marker sets)</option><option value="40544">Sutterella (3 genomes, 232 marker sets)</option><option value="1129">Synechococcus (25 genomes, 425 marker sets)</option><option value="1142">Synechocystis (5 genomes, 794 marker sets)</option><option value="195950">Tannerella (2 genomes, 441 marker sets)</option><option value="29574">Taylorella (4 genomes, 71 marker sets)</option><option value="104267">Tenacibaculum (2 genomes, 272 marker sets)</option><option value="2425">Teredinibacter (10 genomes, 360 marker sets)</option><option value="51668">Tetragenococcus (2 genomes, 183 marker sets)</option><option value="168934">Thalassospira (3 genomes, 326 marker sets)</option><option value="33057">Thauera (6 genomes, 334 marker sets)</option><option value="140458">Thermacetogenium (2 genomes, 157 marker sets)</option><option value="73918">Thermaerobacter (2 genomes, 181 marker sets)</option><option value="81461">Thermanaerovibrio (2 genomes, 117 marker sets)</option><option value="1754">Thermoanaerobacter (13 genomes, 195 marker sets)</option><option value="28895">Thermoanaerobacterium (4 genomes, 147 marker sets)</option><option value="83677">Thermobifida (2 genomes, 225 marker sets)</option><option value="2263">Thermococcus (9 genomes, 286 marker sets)</option><option value="75905">Thermocrinis (2 genomes, 515 marker sets)</option><option value="37924">Thermocrispum (2 genomes, 288 marker sets)</option><option value="241192">Thermodesulfatator (2 genomes, 333 marker sets)</option><option value="1740">Thermodesulfobacterium (3 genomes, 243 marker sets)</option><option value="28261">Thermodesulfovibrio (3 genomes, 215 marker sets)</option><option value="477695">Thermogladius (2 genomes, 60 marker sets)</option><option value="2302">Thermoplasma (2 genomes, 167 marker sets)</option><option value="2270">Thermoproteus (3 genomes, 281 marker sets)</option><option value="2420">Thermosipho (2 genomes, 148 marker sets)</option><option value="2335">Thermotoga (8 genomes, 325 marker sets)</option><option value="270">Thermus (14 genomes, 311 marker sets)</option><option value="933">Thioalkalimicrobium (2 genomes, 103 marker sets)</option><option value="106633">Thioalkalivibrio (70 genomes, 270 marker sets)</option><option value="919">Thiobacillus (3 genomes, 209 marker sets)</option><option value="32012">Thiomonas (3 genomes, 366 marker sets)</option><option value="1030">Thiothrix (4 genomes, 417 marker sets)</option><option value="43947">Tolumonas (2 genomes, 200 marker sets)</option><option value="157">Treponema (28 genomes, 173 marker sets)</option><option value="191303">Turicibacter (2 genomes, 236 marker sets)</option><option value="2129">Ureaplasma (15 genomes, 51 marker sets)</option><option value="34072">Variovorax (7 genomes, 351 marker sets)</option><option value="29465">Veillonella (13 genomes, 219 marker sets)</option><option value="2735">Verrucomicrobium (3 genomes, 466 marker sets)</option><option value="662">Vibrio (70 genomes, 381 marker sets)</option><option value="164450">Vulcanisaeta (2 genomes, 173 marker sets)</option><option value="46255">Weissella (6 genomes, 171 marker sets)</option><option value="51228">Wigglesworthia (2 genomes, 9 marker sets)</option><option value="582472">Wohlfahrtiimonas (2 genomes, 78 marker sets)</option><option value="953">Wolbachia (8 genomes, 275 marker sets)</option><option value="279">Xanthobacter (3 genomes, 374 marker sets)</option><option value="338">Xanthomonas (16 genomes, 401 marker sets)</option><option value="626">Xenorhabdus (2 genomes, 267 marker sets)</option><option value="2370">Xylella (10 genomes, 178 marker sets)</option><option value="629">Yersinia (35 genomes, 341 marker sets)</option><option value="541">Zymomonas (3 genomes, 133 marker sets)</option></select></div> <div id="div_species"><select class="form-control chosen-select" id="field_species" name="field_species"><option value="438">Acetobacter pasteurianus (9 genomes, 160 marker sets)</option><option value="72556">Achromobacter piechaudii (2 genomes, 428 marker sets)</option><option value="85698">Achromobacter xylosoxidans (2 genomes, 445 marker sets)</option><option value="187327">Acidaminococcus intestini (2 genomes, 140 marker sets)</option><option value="33059">Acidithiobacillus caldus (2 genomes, 153 marker sets)</option><option value="920">Acidithiobacillus ferrooxidans (2 genomes, 128 marker sets)</option><option value="80867">Acidovorax avenae (2 genomes, 327 marker sets)</option><option value="470">Acinetobacter baumannii (20 genomes, 298 marker sets)</option><option value="202950">Acinetobacter baylyi (2 genomes, 195 marker sets)</option><option value="471">Acinetobacter calcoaceticus (5 genomes, 252 marker sets)</option><option value="40214">Acinetobacter johnsonii (2 genomes, 204 marker sets)</option><option value="40215">Acinetobacter junii (4 genomes, 222 marker sets)</option><option value="28090">Acinetobacter lwoffii (3 genomes, 221 marker sets)</option><option value="106654">Acinetobacter nosocomialis (2 genomes, 214 marker sets)</option><option value="40216">Acinetobacter radioresistens (5 genomes, 199 marker sets)</option><option value="715">Actinobacillus pleuropneumoniae (13 genomes, 210 marker sets)</option><option value="59505">Actinobaculum schaalii (2 genomes, 128 marker sets)</option><option value="55565">Actinomyces graevenitzii (2 genomes, 144 marker sets)</option><option value="1655">Actinomyces naeslundii (2 genomes, 299 marker sets)</option><option value="1660">Actinomyces odontolyticus (2 genomes, 179 marker sets)</option><option value="644">Aeromonas hydrophila (3 genomes, 312 marker sets)</option><option value="654">Aeromonas veronii (6 genomes, 329 marker sets)</option><option value="714">Aggregatibacter actinomycetemcomitans (10 genomes, 217 marker sets)</option><option value="358">Agrobacterium tumefaciens (2 genomes, 278 marker sets)</option><option value="179636">Alicycliphilus denitrificans (2 genomes, 258 marker sets)</option><option value="405212">Alicyclobacillus acidocaldarius (2 genomes, 157 marker sets)</option><option value="419015">Alloscardovia omnicolens (2 genomes, 116 marker sets)</option><option value="28108">Alteromonas macleodii (4 genomes, 274 marker sets)</option><option value="33910">Amycolatopsis mediterranei (3 genomes, 526 marker sets)</option><option value="109265">Anabaena circinalis (2 genomes, 362 marker sets)</option><option value="33034">Anaerococcus prevotii (2 genomes, 143 marker sets)</option><option value="161493">Anaeromyxobacter dehalogenans (2 genomes, 335 marker sets)</option><option value="33934">Anoxybacillus flavithermus (2 genomes, 163 marker sets)</option><option value="2234">Archaeoglobus fulgidus (2 genomes, 111 marker sets)</option><option value="28197">Arcobacter butzleri (4 genomes, 144 marker sets)</option><option value="29320">Arthrobacter nicotinovorans (2 genomes, 287 marker sets)</option><option value="118562">Arthrospira platensis (2 genomes, 419 marker sets)</option><option value="82135">Atopobium vaginae (2 genomes, 165 marker sets)</option><option value="354">Azotobacter vinelandii (3 genomes, 269 marker sets)</option><option value="1390">Bacillus amyloliquefaciens (9 genomes, 226 marker sets)</option><option value="1392">Bacillus anthracis (11 genomes, 354 marker sets)</option><option value="1396">Bacillus cereus (20 genomes, 319 marker sets)</option><option value="1398">Bacillus coagulans (4 genomes, 245 marker sets)</option><option value="1402">Bacillus licheniformis (4 genomes, 246 marker sets)</option><option value="1404">Bacillus megaterium (3 genomes, 292 marker sets)</option><option value="1471">Bacillus methanolicus (2 genomes, 206 marker sets)</option><option value="1408">Bacillus pumilus (2 genomes, 218 marker sets)</option><option value="1423">Bacillus subtilis (14 genomes, 247 marker sets)</option><option value="1428">Bacillus thuringiensis (11 genomes, 357 marker sets)</option><option value="47678">Bacteroides caccae (2 genomes, 256 marker sets)</option><option value="28111">Bacteroides eggerthii (2 genomes, 205 marker sets)</option><option value="817">Bacteroides fragilis (10 genomes, 303 marker sets)</option><option value="204516">Bacteroides massiliensis (2 genomes, 274 marker sets)</option><option value="28116">Bacteroides ovatus (6 genomes, 317 marker sets)</option><option value="46506">Bacteroides stercoris (2 genomes, 210 marker sets)</option><option value="818">Bacteroides thetaiotaomicron (6 genomes, 313 marker sets)</option><option value="820">Bacteroides uniformis (2 genomes, 253 marker sets)</option><option value="371601">Bacteroides xylanisolvens (12 genomes, 325 marker sets)</option><option value="56426">Bartonella clarridgeiae (2 genomes, 52 marker sets)</option><option value="33044">Bartonella doshiae (2 genomes, 73 marker sets)</option><option value="807">Bartonella elizabethae (3 genomes, 88 marker sets)</option><option value="33045">Bartonella grahamii (2 genomes, 95 marker sets)</option><option value="803">Bartonella quintana (2 genomes, 55 marker sets)</option><option value="373638">Bartonella tamiae (2 genomes, 94 marker sets)</option><option value="33047">Bartonella vinsonii (4 genomes, 71 marker sets)</option><option value="959">Bdellovibrio bacteriovorus (2 genomes, 305 marker sets)</option><option value="1680">Bifidobacterium adolescentis (3 genomes, 116 marker sets)</option><option value="28025">Bifidobacterium animalis (9 genomes, 113 marker sets)</option><option value="1681">Bifidobacterium bifidum (5 genomes, 140 marker sets)</option><option value="1685">Bifidobacterium breve (6 genomes, 166 marker sets)</option><option value="1689">Bifidobacterium dentium (3 genomes, 156 marker sets)</option><option value="216816">Bifidobacterium longum (15 genomes, 214 marker sets)</option><option value="1694">Bifidobacterium pseudolongum (2 genomes, 123 marker sets)</option><option value="33035">Blautia producta (2 genomes, 376 marker sets)</option><option value="418240">Blautia wexlerae (2 genomes, 270 marker sets)</option><option value="35814">Bordetella holmesii (2 genomes, 215 marker sets)</option><option value="520">Bordetella pertussis (2 genomes, 225 marker sets)</option><option value="29518">Borrelia afzelii (2 genomes, 23 marker sets)</option><option value="139">Borrelia burgdorferi (7 genomes, 36 marker sets)</option><option value="29519">Borrelia garinii (3 genomes, 51 marker sets)</option><option value="159">Brachyspira hyodysenteriae (2 genomes, 201 marker sets)</option><option value="52584">Brachyspira pilosicoli (4 genomes, 213 marker sets)</option><option value="29448">Bradyrhizobium elkanii (6 genomes, 415 marker sets)</option><option value="375">Bradyrhizobium japonicum (9 genomes, 389 marker sets)</option><option value="1465">Brevibacillus laterosporus (2 genomes, 311 marker sets)</option><option value="235">Brucella abortus (20 genomes, 206 marker sets)</option><option value="36855">Brucella canis (7 genomes, 163 marker sets)</option><option value="120577">Brucella ceti (4 genomes, 299 marker sets)</option><option value="29459">Brucella melitensis (20 genomes, 270 marker sets)</option><option value="236">Brucella ovis (9 genomes, 181 marker sets)</option><option value="120576">Brucella pinnipedialis (2 genomes, 189 marker sets)</option><option value="29461">Brucella suis (16 genomes, 276 marker sets)</option><option value="9">Buchnera aphidicola (10 genomes, 35 marker sets)</option><option value="95486">Burkholderia cenocepacia (5 genomes, 398 marker sets)</option><option value="292">Burkholderia cepacia (5 genomes, 330 marker sets)</option><option value="13373">Burkholderia mallei (9 genomes, 397 marker sets)</option><option value="312026">Burkholderia mimosarum (2 genomes, 442 marker sets)</option><option value="87883">Burkholderia multivorans (4 genomes, 361 marker sets)</option><option value="28450">Burkholderia pseudomallei (12 genomes, 455 marker sets)</option><option value="831">Butyrivibrio fibrisolvens (4 genomes, 302 marker sets)</option><option value="43305">Butyrivibrio proteoclasticus (2 genomes, 327 marker sets)</option><option value="301953">Caldicellulosiruptor kristjanssonii (3 genomes, 159 marker sets)</option><option value="195">Campylobacter coli (20 genomes, 188 marker sets)</option><option value="200">Campylobacter curvus (2 genomes, 92 marker sets)</option><option value="196">Campylobacter fetus (2 genomes, 80 marker sets)</option><option value="197">Campylobacter jejuni (20 genomes, 161 marker sets)</option><option value="204">Campylobacter showae (2 genomes, 118 marker sets)</option><option value="28080">Campylobacter upsaliensis (3 genomes, 103 marker sets)</option><option value="198252">Candidatus Pelagibacter ubique (10 genomes, 128 marker sets)</option><option value="1018">Capnocytophaga ochracea (3 genomes, 205 marker sets)</option><option value="155892">Caulobacter crescentus (2 genomes, 221 marker sets)</option><option value="1711">Cellulomonas flavigena (2 genomes, 325 marker sets)</option><option value="83560">Chlamydia muridarum (3 genomes, 35 marker sets)</option><option value="83554">Chlamydia psittaci (20 genomes, 74 marker sets)</option><option value="813">Chlamydia trachomatis (20 genomes, 41 marker sets)</option><option value="83558">Chlamydophila pneumoniae (5 genomes, 57 marker sets)</option><option value="1096">Chlorobium phaeobacteroides (2 genomes, 255 marker sets)</option><option value="546">Citrobacter freundii (3 genomes, 327 marker sets)</option><option value="28447">Clavibacter michiganensis (2 genomes, 228 marker sets)</option><option value="1488">Clostridium acetobutylicum (3 genomes, 242 marker sets)</option><option value="1520">Clostridium beijerinckii (2 genomes, 318 marker sets)</option><option value="208479">Clostridium bolteae (5 genomes, 316 marker sets)</option><option value="1491">Clostridium botulinum (15 genomes, 197 marker sets)</option><option value="1492">Clostridium butyricum (3 genomes, 285 marker sets)</option><option value="288965">Clostridium clariflavum (2 genomes, 273 marker sets)</option><option value="1534">Clostridium kluyveri (2 genomes, 212 marker sets)</option><option value="1501">Clostridium pasteurianum (2 genomes, 276 marker sets)</option><option value="1502">Clostridium perfringens (3 genomes, 185 marker sets)</option><option value="1509">Clostridium sporogenes (2 genomes, 242 marker sets)</option><option value="1512">Clostridium symbiosum (2 genomes, 322 marker sets)</option><option value="1515">Clostridium thermocellum (5 genomes, 239 marker sets)</option><option value="285">Comamonas testosteroni (3 genomes, 349 marker sets)</option><option value="38284">Corynebacterium accolens (2 genomes, 206 marker sets)</option><option value="169292">Corynebacterium aurimucosum (2 genomes, 186 marker sets)</option><option value="1717">Corynebacterium diphtheriae (15 genomes, 134 marker sets)</option><option value="152794">Corynebacterium efficiens (2 genomes, 210 marker sets)</option><option value="39791">Corynebacterium glucuronolyticum (3 genomes, 176 marker sets)</option><option value="1718">Corynebacterium glutamicum (6 genomes, 228 marker sets)</option><option value="225326">Corynebacterium halotolerans (2 genomes, 183 marker sets)</option><option value="38289">Corynebacterium jeikeium (2 genomes, 157 marker sets)</option><option value="43768">Corynebacterium matruchotii (2 genomes, 181 marker sets)</option><option value="1719">Corynebacterium pseudotuberculosis (14 genomes, 123 marker sets)</option><option value="65058">Corynebacterium ulcerans (3 genomes, 112 marker sets)</option><option value="43771">Corynebacterium urealyticum (2 genomes, 117 marker sets)</option><option value="777">Coxiella burnetii (5 genomes, 146 marker sets)</option><option value="119219">Cupriavidus metallidurans (2 genomes, 419 marker sets)</option><option value="106590">Cupriavidus necator (2 genomes, 379 marker sets)</option><option value="164546">Cupriavidus taiwanensis (3 genomes, 365 marker sets)</option><option value="73030">Dechloromonas agitata (2 genomes, 220 marker sets)</option><option value="61435">Dehalococcoides mccartyi (4 genomes, 50 marker sets)</option><option value="1299">Deinococcus radiodurans (2 genomes, 206 marker sets)</option><option value="80866">Delftia acidovorans (2 genomes, 421 marker sets)</option><option value="873">Desulfovibrio africanus (3 genomes, 284 marker sets)</option><option value="58180">Desulfovibrio alaskensis (2 genomes, 223 marker sets)</option><option value="876">Desulfovibrio desulfuricans (2 genomes, 423 marker sets)</option><option value="881">Desulfovibrio vulgaris (3 genomes, 344 marker sets)</option><option value="204038">Dickeya dadantii (3 genomes, 307 marker sets)</option><option value="88431">Dorea longicatena (2 genomes, 208 marker sets)</option><option value="636">Edwardsiella tarda (2 genomes, 174 marker sets)</option><option value="779">Ehrlichia ruminantium (3 genomes, 58 marker sets)</option><option value="1117645">Elizabethkingia anophelis (3 genomes, 240 marker sets)</option><option value="380">Ensifer fredii (2 genomes, 357 marker sets)</option><option value="110321">Ensifer medicae (5 genomes, 343 marker sets)</option><option value="382">Ensifer meliloti (15 genomes, 381 marker sets)</option><option value="548">Enterobacter aerogenes (2 genomes, 298 marker sets)</option><option value="550">Enterobacter cloacae (6 genomes, 306 marker sets)</option><option value="37734">Enterococcus casseliflavus (4 genomes, 221 marker sets)</option><option value="1351">Enterococcus faecalis (20 genomes, 298 marker sets)</option><option value="1352">Enterococcus faecium (20 genomes, 257 marker sets)</option><option value="1353">Enterococcus gallinarum (2 genomes, 191 marker sets)</option><option value="88132">Eremococcus coleocola (2 genomes, 109 marker sets)</option><option value="552">Erwinia amylovora (3 genomes, 177 marker sets)</option><option value="79967">Erwinia pyrifoliae (2 genomes, 184 marker sets)</option><option value="562">Escherichia coli (20 genomes, 307 marker sets)</option><option value="564">Escherichia fergusonii (2 genomes, 277 marker sets)</option><option value="29322">Eubacterium cellulosolvens (2 genomes, 198 marker sets)</option><option value="467210">Eubacterium saburreum (2 genomes, 223 marker sets)</option><option value="340145">Exiguobacterium sibiricum (2 genomes, 175 marker sets)</option><option value="169177">Exiguobacterium undae (2 genomes, 173 marker sets)</option><option value="178214">Facklamia hominis (2 genomes, 100 marker sets)</option><option value="1260">Finegoldia magna (5 genomes, 111 marker sets)</option><option value="657445">Francisella noatunensis (6 genomes, 235 marker sets)</option><option value="28110">Francisella philomiragia (6 genomes, 132 marker sets)</option><option value="263">Francisella tularensis (20 genomes, 176 marker sets)</option><option value="859">Fusobacterium necrophorum (2 genomes, 117 marker sets)</option><option value="851">Fusobacterium nucleatum (6 genomes, 256 marker sets)</option><option value="750">Gallibacterium anatis (2 genomes, 168 marker sets)</option><option value="2702">Gardnerella vaginalis (14 genomes, 237 marker sets)</option><option value="1379">Gemella haemolysans (2 genomes, 126 marker sets)</option><option value="301148">Geobacillus debilis (2 genomes, 195 marker sets)</option><option value="35554">Geobacter sulfurreducens (2 genomes, 199 marker sets)</option><option value="395568">Glaciecola agarilytica (2 genomes, 312 marker sets)</option><option value="33996">Gluconacetobacter diazotrophicus (2 genomes, 190 marker sets)</option><option value="89053">Gordonia amicalis (2 genomes, 324 marker sets)</option><option value="84595">Gordonia polyisoprenivorans (3 genomes, 366 marker sets)</option><option value="730">Haemophilus ducreyi (4 genomes, 128 marker sets)</option><option value="726">Haemophilus haemolyticus (3 genomes, 149 marker sets)</option><option value="727">Haemophilus influenzae (17 genomes, 157 marker sets)</option><option value="729">Haemophilus parainfluenzae (5 genomes, 631 marker sets)</option><option value="738">Haemophilus parasuis (2 genomes, 136 marker sets)</option><option value="413810">Halalkalicoccus jeotgali (2 genomes, 212 marker sets)</option><option value="244363">Haloarcula californiae (2 genomes, 260 marker sets)</option><option value="28442">Haloarcula vallismortis (2 genomes, 244 marker sets)</option><option value="229731">Halobiforma lacisalsi (2 genomes, 320 marker sets)</option><option value="35745">Haloferax denitrificans (2 genomes, 231 marker sets)</option><option value="403181">Haloferax mucosum (2 genomes, 193 marker sets)</option><option value="255616">Haloferax sulfurifontis (2 genomes, 237 marker sets)</option><option value="2246">Haloferax volcanii (3 genomes, 230 marker sets)</option><option value="293091">Haloquadratum walsbyi (3 genomes, 192 marker sets)</option><option value="138563">Helicobacter cetorum (2 genomes, 162 marker sets)</option><option value="210">Helicobacter pylori (20 genomes, 143 marker sets)</option><option value="731">Histophilus somni (2 genomes, 98 marker sets)</option><option value="940">Hydrogenobacter thermophilus (2 genomes, 52 marker sets)</option><option value="53399">Hyphomicrobium denitrificans (2 genomes, 196 marker sets)</option><option value="139208">Isoptericola variabilis (2 genomes, 168 marker sets)</option><option value="428712">Jonquetella anthropi (2 genomes, 78 marker sets)</option><option value="1630">Kandleria vitulina (3 genomes, 154 marker sets)</option><option value="571">Klebsiella oxytoca (5 genomes, 377 marker sets)</option><option value="573">Klebsiella pneumoniae (20 genomes, 383 marker sets)</option><option value="140626">Lachnobacterium bovis (2 genomes, 173 marker sets)</option><option value="28051">Lachnospira multipara (3 genomes, 196 marker sets)</option><option value="1579">Lactobacillus acidophilus (3 genomes, 127 marker sets)</option><option value="1604">Lactobacillus amylovorus (2 genomes, 112 marker sets)</option><option value="1580">Lactobacillus brevis (4 genomes, 203 marker sets)</option><option value="1582">Lactobacillus casei (16 genomes, 222 marker sets)</option><option value="47770">Lactobacillus crispatus (8 genomes, 178 marker sets)</option><option value="1584">Lactobacillus delbrueckii (7 genomes, 159 marker sets)</option><option value="1613">Lactobacillus fermentum (3 genomes, 129 marker sets)</option><option value="1596">Lactobacillus gasseri (5 genomes, 131 marker sets)</option><option value="1587">Lactobacillus helveticus (4 genomes, 148 marker sets)</option><option value="147802">Lactobacillus iners (15 genomes, 125 marker sets)</option><option value="109790">Lactobacillus jensenii (5 genomes, 106 marker sets)</option><option value="33959">Lactobacillus johnsonii (4 genomes, 130 marker sets)</option><option value="1597">Lactobacillus paracasei (3 genomes, 225 marker sets)</option><option value="1598">Lactobacillus reuteri (9 genomes, 185 marker sets)</option><option value="47715">Lactobacillus rhamnosus (10 genomes, 246 marker sets)</option><option value="1623">Lactobacillus ruminis (2 genomes, 143 marker sets)</option><option value="1624">Lactobacillus salivarius (5 genomes, 162 marker sets)</option><option value="1363">Lactococcus garvieae (4 genomes, 157 marker sets)</option><option value="1358">Lactococcus lactis (10 genomes, 190 marker sets)</option><option value="168471">Laribacter hongkongensis (2 genomes, 150 marker sets)</option><option value="450">Legionella longbeachae (2 genomes, 256 marker sets)</option><option value="446">Legionella pneumophila (8 genomes, 213 marker sets)</option><option value="28087">Legionella sainthelensi (2 genomes, 299 marker sets)</option><option value="29508">Leptospira meyeri (2 genomes, 278 marker sets)</option><option value="157692">Leptotrichia goodfellowii (2 genomes, 182 marker sets)</option><option value="33964">Leuconostoc citreum (4 genomes, 102 marker sets)</option><option value="1244">Leuconostoc gelidum (2 genomes, 105 marker sets)</option><option value="136609">Leuconostoc kimchii (2 genomes, 97 marker sets)</option><option value="1245">Leuconostoc mesenteroides (3 genomes, 110 marker sets)</option><option value="1639">Listeria monocytogenes (20 genomes, 179 marker sets)</option><option value="245188">Loktanella vestfoldensis (2 genomes, 189 marker sets)</option><option value="28031">Lysinibacillus fusiformis (2 genomes, 299 marker sets)</option><option value="75985">Mannheimia haemolytica (3 genomes, 156 marker sets)</option><option value="314344">Mariprofundus ferrooxydans (2 genomes, 184 marker sets)</option><option value="907">Megasphaera elsdenii (2 genomes, 145 marker sets)</option><option value="39645">Mesorhizobium ciceri (3 genomes, 386 marker sets)</option><option value="381">Mesorhizobium loti (6 genomes, 375 marker sets)</option><option value="2173">Methanobrevibacter smithii (3 genomes, 82 marker sets)</option><option value="39152">Methanococcus maripaludis (4 genomes, 83 marker sets)</option><option value="408">Methylobacterium extorquens (4 genomes, 302 marker sets)</option><option value="414">Methylococcus capsulatus (2 genomes, 188 marker sets)</option><option value="359408">Methylotenera mobilis (2 genomes, 143 marker sets)</option><option value="1055487">Methylotenera versatilis (2 genomes, 231 marker sets)</option><option value="378211">Methyloversatilis universalis (3 genomes, 262 marker sets)</option><option value="2051">Mobiluncus curtisii (4 genomes, 115 marker sets)</option><option value="2052">Mobiluncus mulieris (4 genomes, 165 marker sets)</option><option value="480">Moraxella catarrhalis (8 genomes, 113 marker sets)</option><option value="36809">Mycobacterium abscessus (20 genomes, 333 marker sets)</option><option value="1764">Mycobacterium avium (3 genomes, 324 marker sets)</option><option value="78331">Mycobacterium canettii (4 genomes, 260 marker sets)</option><option value="1804">Mycobacterium gilvum (2 genomes, 320 marker sets)</option><option value="1767">Mycobacterium intracellulare (3 genomes, 278 marker sets)</option><option value="1769">Mycobacterium leprae (2 genomes, 195 marker sets)</option><option value="1781">Mycobacterium marinum (2 genomes, 358 marker sets)</option><option value="36814">Mycobacterium rhodesiae (2 genomes, 411 marker sets)</option><option value="1773">Mycobacterium tuberculosis (20 genomes, 383 marker sets)</option><option value="2094">Mycoplasma arginini (2 genomes, 170 marker sets)</option><option value="2115">Mycoplasma fermentans (2 genomes, 49 marker sets)</option><option value="2096">Mycoplasma gallisepticum (12 genomes, 45 marker sets)</option><option value="2097">Mycoplasma genitalium (2 genomes, 21 marker sets)</option><option value="2099">Mycoplasma hyopneumoniae (3 genomes, 47 marker sets)</option><option value="2105">Mycoplasma leachii (2 genomes, 49 marker sets)</option><option value="2102">Mycoplasma mycoides (4 genomes, 64 marker sets)</option><option value="2109">Mycoplasma synoviae (2 genomes, 39 marker sets)</option><option value="76832">Myroides odoratimimus (6 genomes, 318 marker sets)</option><option value="44930">Natronobacterium gregoryi (2 genomes, 271 marker sets)</option><option value="63128">Natronorubrum tibetense (2 genomes, 332 marker sets)</option><option value="484">Neisseria flavescens (2 genomes, 164 marker sets)</option><option value="485">Neisseria gonorrhoeae (14 genomes, 205 marker sets)</option><option value="487">Neisseria meningitidis (20 genomes, 216 marker sets)</option><option value="378548">Novosphingobium nitrogenifigens (2 genomes, 232 marker sets)</option><option value="153233">Oceanicaulis alexandrii (2 genomes, 175 marker sets)</option><option value="94625">Ochrobactrum intermedium (2 genomes, 251 marker sets)</option><option value="1247">Oenococcus oeni (12 genomes, 112 marker sets)</option><option value="784">Orientia tsutsugamushi (2 genomes, 94 marker sets)</option><option value="28251">Ornithobacterium rhinotracheale (2 genomes, 138 marker sets)</option><option value="847">Oxalobacter formigenes (2 genomes, 133 marker sets)</option><option value="44250">Paenibacillus alvei (3 genomes, 356 marker sets)</option><option value="61624">Paenibacillus mucilaginosus (2 genomes, 433 marker sets)</option><option value="553">Pantoea ananatis (4 genomes, 263 marker sets)</option><option value="46503">Parabacteroides merdae (3 genomes, 260 marker sets)</option><option value="83552">Parachlamydia acanthamoebae (2 genomes, 203 marker sets)</option><option value="78258">Parascardovia denticolens (2 genomes, 87 marker sets)</option><option value="747">Pasteurella multocida (5 genomes, 149 marker sets)</option><option value="554">Pectobacterium carotovorum (2 genomes, 285 marker sets)</option><option value="1254">Pediococcus acidilactici (4 genomes, 109 marker sets)</option><option value="1255">Pediococcus pentosaceus (2 genomes, 98 marker sets)</option><option value="365349">Pelosinus fermentans (2 genomes, 299 marker sets)</option><option value="33031">Peptoniphilus lacrimalis (2 genomes, 98 marker sets)</option><option value="1261">Peptostreptococcus anaerobius (2 genomes, 136 marker sets)</option><option value="60890">Phaeobacter gallaeciensis (4 genomes, 329 marker sets)</option><option value="74109">Photobacterium profundum (2 genomes, 406 marker sets)</option><option value="576610">Polynucleobacter necessarius (3 genomes, 106 marker sets)</option><option value="28123">Porphyromonas asaccharolytica (2 genomes, 131 marker sets)</option><option value="837">Porphyromonas gingivalis (8 genomes, 194 marker sets)</option><option value="419005">Prevotella amnii (2 genomes, 155 marker sets)</option><option value="28125">Prevotella bivia (2 genomes, 150 marker sets)</option><option value="28126">Prevotella buccae (2 genomes, 220 marker sets)</option><option value="52227">Prevotella dentalis (2 genomes, 188 marker sets)</option><option value="28129">Prevotella denticola (3 genomes, 186 marker sets)</option><option value="28131">Prevotella intermedia (2 genomes, 149 marker sets)</option><option value="439703">Prevotella maculosa (2 genomes, 211 marker sets)</option><option value="28132">Prevotella melaninogenica (2 genomes, 225 marker sets)</option><option value="189723">Prevotella micans (2 genomes, 165 marker sets)</option><option value="28135">Prevotella oris (3 genomes, 202 marker sets)</option><option value="28137">Prevotella veroralis (2 genomes, 200 marker sets)</option><option value="1219">Prochlorococcus marinus (13 genomes, 183 marker sets)</option><option value="556499">Propionibacterium acidifaciens (2 genomes, 376 marker sets)</option><option value="1748">Propionibacterium acidipropionici (2 genomes, 233 marker sets)</option><option value="1747">Propionibacterium acnes (20 genomes, 218 marker sets)</option><option value="33010">Propionibacterium avidum (2 genomes, 150 marker sets)</option><option value="33012">Propionimicrobium lymphophilum (2 genomes, 105 marker sets)</option><option value="584">Proteus mirabilis (2 genomes, 231 marker sets)</option><option value="126385">Providencia alcalifaciens (2 genomes, 218 marker sets)</option><option value="588">Providencia stuartii (2 genomes, 220 marker sets)</option><option value="228">Pseudoalteromonas haloplanktis (2 genomes, 348 marker sets)</option><option value="43657">Pseudoalteromonas luteoviolacea (2 genomes, 389 marker sets)</option><option value="43662">Pseudoalteromonas piscicida (2 genomes, 366 marker sets)</option><option value="46206">Pseudobutyrivibrio ruminis (3 genomes, 238 marker sets)</option><option value="287">Pseudomonas aeruginosa (19 genomes, 469 marker sets)</option><option value="930166">Pseudomonas brassicacearum (2 genomes, 393 marker sets)</option><option value="587753">Pseudomonas chlororaphis (2 genomes, 402 marker sets)</option><option value="294">Pseudomonas fluorescens (9 genomes, 347 marker sets)</option><option value="47880">Pseudomonas fulva (2 genomes, 484 marker sets)</option><option value="300">Pseudomonas mendocina (3 genomes, 338 marker sets)</option><option value="76759">Pseudomonas monteilii (3 genomes, 372 marker sets)</option><option value="303">Pseudomonas putida (13 genomes, 410 marker sets)</option><option value="317">Pseudomonas syringae (20 genomes, 395 marker sets)</option><option value="157784">Pseudomonas thermotolerans (2 genomes, 219 marker sets)</option><option value="198618">Pseudomonas umsongensis (2 genomes, 378 marker sets)</option><option value="33069">Pseudomonas viridiflava (3 genomes, 420 marker sets)</option><option value="314722">Pseudoxanthomonas suwonensis (3 genomes, 280 marker sets)</option><option value="2261">Pyrococcus furiosus (2 genomes, 99 marker sets)</option><option value="329">Ralstonia pickettii (2 genomes, 287 marker sets)</option><option value="305">Ralstonia solanacearum (4 genomes, 320 marker sets)</option><option value="29449">Rhizobium etli (2 genomes, 331 marker sets)</option><option value="384">Rhizobium leguminosarum (20 genomes, 354 marker sets)</option><option value="1063">Rhodobacter sphaeroides (5 genomes, 281 marker sets)</option><option value="1833">Rhodococcus erythropolis (2 genomes, 402 marker sets)</option><option value="103816">Rhodococcus pyridinivorans (2 genomes, 319 marker sets)</option><option value="336828">Rhodonellum psychrophilum (2 genomes, 372 marker sets)</option><option value="1076">Rhodopseudomonas palustris (7 genomes, 388 marker sets)</option><option value="1085">Rhodospirillum rubrum (2 genomes, 250 marker sets)</option><option value="29549">Rhodothermus marinus (3 genomes, 216 marker sets)</option><option value="788">Rickettsia canadensis (2 genomes, 35 marker sets)</option><option value="35791">Rickettsia massiliae (2 genomes, 67 marker sets)</option><option value="782">Rickettsia prowazekii (5 genomes, 44 marker sets)</option><option value="783">Rickettsia rickettsii (14 genomes, 72 marker sets)</option><option value="35794">Rickettsia slovaca (2 genomes, 50 marker sets)</option><option value="785">Rickettsia typhi (3 genomes, 24 marker sets)</option><option value="34085">Riemerella anatipestifer (5 genomes, 139 marker sets)</option><option value="2047">Rothia dentocariosa (2 genomes, 145 marker sets)</option><option value="43675">Rothia mucilaginosa (3 genomes, 143 marker sets)</option><option value="316997">Rubrivivax benzoatilyticus (2 genomes, 310 marker sets)</option><option value="1264">Ruminococcus albus (2 genomes, 284 marker sets)</option><option value="1265">Ruminococcus flavefaciens (5 genomes, 287 marker sets)</option><option value="33038">Ruminococcus gnavus (2 genomes, 199 marker sets)</option><option value="40988">Saccharomonospora azurea (2 genomes, 314 marker sets)</option><option value="168697">Salinispora arenicola (20 genomes, 326 marker sets)</option><option value="351187">Salinispora pacifica (20 genomes, 278 marker sets)</option><option value="168695">Salinispora tropica (5 genomes, 311 marker sets)</option><option value="28901">Salmonella enterica (20 genomes, 283 marker sets)</option><option value="1008">Saprospira grandis (2 genomes, 326 marker sets)</option><option value="671224">Selenomonas artemidis (2 genomes, 134 marker sets)</option><option value="416586">Selenomonas bovis (2 genomes, 191 marker sets)</option><option value="971">Selenomonas ruminantium (4 genomes, 375 marker sets)</option><option value="69823">Selenomonas sputigena (2 genomes, 138 marker sets)</option><option value="615">Serratia marcescens (2 genomes, 324 marker sets)</option><option value="82996">Serratia plymuthica (5 genomes, 304 marker sets)</option><option value="28151">Serratia proteamaculans (2 genomes, 304 marker sets)</option><option value="62322">Shewanella baltica (8 genomes, 338 marker sets)</option><option value="621">Shigella boydii (6 genomes, 348 marker sets)</option><option value="622">Shigella dysenteriae (4 genomes, 335 marker sets)</option><option value="623">Shigella flexneri (18 genomes, 333 marker sets)</option><option value="624">Shigella sonnei (5 genomes, 302 marker sets)</option><option value="102148">Solobacterium moorei (2 genomes, 170 marker sets)</option><option value="152682">Sphingomonas melonis (3 genomes, 203 marker sets)</option><option value="257003">Sphingomonas phyllosphaerae (2 genomes, 248 marker sets)</option><option value="154">Spirochaeta thermophila (2 genomes, 152 marker sets)</option><option value="1280">Staphylococcus aureus (20 genomes, 170 marker sets)</option><option value="1282">Staphylococcus epidermidis (20 genomes, 208 marker sets)</option><option value="1290">Staphylococcus hominis (2 genomes, 107 marker sets)</option><option value="28035">Staphylococcus lugdunensis (3 genomes, 131 marker sets)</option><option value="283734">Staphylococcus pseudintermedius (2 genomes, 134 marker sets)</option><option value="40324">Stenotrophomonas maltophilia (8 genomes, 396 marker sets)</option><option value="1311">Streptococcus agalactiae (20 genomes, 204 marker sets)</option><option value="1328">Streptococcus anginosus (5 genomes, 160 marker sets)</option><option value="113107">Streptococcus australis (2 genomes, 124 marker sets)</option><option value="1335">Streptococcus bovis (5 genomes, 140 marker sets)</option><option value="1334">Streptococcus dysgalactiae (5 genomes, 204 marker sets)</option><option value="1336">Streptococcus equi (4 genomes, 136 marker sets)</option><option value="315405">Streptococcus gallolyticus (3 genomes, 131 marker sets)</option><option value="102684">Streptococcus infantarius (2 genomes, 118 marker sets)</option><option value="68892">Streptococcus infantis (4 genomes, 131 marker sets)</option><option value="1338">Streptococcus intermedius (3 genomes, 115 marker sets)</option><option value="28037">Streptococcus mitis (11 genomes, 256 marker sets)</option><option value="1309">Streptococcus mutans (8 genomes, 121 marker sets)</option><option value="1303">Streptococcus oralis (9 genomes, 196 marker sets)</option><option value="1318">Streptococcus parasanguinis (6 genomes, 203 marker sets)</option><option value="1348">Streptococcus parauberis (3 genomes, 126 marker sets)</option><option value="1313">Streptococcus pneumoniae (20 genomes, 160 marker sets)</option><option value="257758">Streptococcus pseudopneumoniae (3 genomes, 236 marker sets)</option><option value="361101">Streptococcus pseudoporcinus (2 genomes, 114 marker sets)</option><option value="1314">Streptococcus pyogenes (20 genomes, 150 marker sets)</option><option value="1304">Streptococcus salivarius (4 genomes, 130 marker sets)</option><option value="1305">Streptococcus sanguinis (13 genomes, 335 marker sets)</option><option value="1307">Streptococcus suis (14 genomes, 161 marker sets)</option><option value="1308">Streptococcus thermophilus (6 genomes, 96 marker sets)</option><option value="149016">Streptococcus urinalis (2 genomes, 100 marker sets)</option><option value="29303">Streptomyces cattleya (3 genomes, 495 marker sets)</option><option value="53633">Sulfobacillus acidophilus (2 genomes, 192 marker sets)</option><option value="2285">Sulfolobus acidocaldarius (3 genomes, 115 marker sets)</option><option value="43080">Sulfolobus islandicus (9 genomes, 149 marker sets)</option><option value="2287">Sulfolobus solfataricus (2 genomes, 116 marker sets)</option><option value="40545">Sutterella wadsworthensis (3 genomes, 232 marker sets)</option><option value="32046">Synechococcus elongatus (2 genomes, 121 marker sets)</option><option value="84590">Taylorella asinigenitalis (2 genomes, 58 marker sets)</option><option value="29575">Taylorella equigenitalis (2 genomes, 53 marker sets)</option><option value="2426">Teredinibacter turnerae (8 genomes, 312 marker sets)</option><option value="76112">Thauera linaloolentis (2 genomes, 294 marker sets)</option><option value="85874">Thermacetogenium phaeum (2 genomes, 157 marker sets)</option><option value="1517">Thermoanaerobacterium thermosaccharolyticum (2 genomes, 136 marker sets)</option><option value="2021">Thermobifida fusca (2 genomes, 225 marker sets)</option><option value="56957">Thermus oshimai (2 genomes, 112 marker sets)</option><option value="37636">Thermus scotoductus (2 genomes, 162 marker sets)</option><option value="274">Thermus thermophilus (4 genomes, 123 marker sets)</option><option value="152475">Thioalkalivibrio thiocyanoxidans (2 genomes, 330 marker sets)</option><option value="36861">Thiobacillus denitrificans (2 genomes, 203 marker sets)</option><option value="158">Treponema denticola (9 genomes, 221 marker sets)</option><option value="160">Treponema pallidum (3 genomes, 44 marker sets)</option><option value="69710">Treponema vincentii (2 genomes, 178 marker sets)</option><option value="134821">Ureaplasma parvum (5 genomes, 35 marker sets)</option><option value="2130">Ureaplasma urealyticum (10 genomes, 50 marker sets)</option><option value="34073">Variovorax paradoxus (5 genomes, 368 marker sets)</option><option value="39777">Veillonella atypica (3 genomes, 136 marker sets)</option><option value="29466">Veillonella parvula (2 genomes, 97 marker sets)</option><option value="663">Vibrio alginolyticus (5 genomes, 392 marker sets)</option><option value="666">Vibrio cholerae (20 genomes, 348 marker sets)</option><option value="668">Vibrio fischeri (2 genomes, 227 marker sets)</option><option value="669">Vibrio harveyi (3 genomes, 373 marker sets)</option><option value="674">Vibrio mimicus (2 genomes, 276 marker sets)</option><option value="670">Vibrio parahaemolyticus (12 genomes, 363 marker sets)</option><option value="29497">Vibrio splendidus (2 genomes, 310 marker sets)</option><option value="672">Vibrio vulnificus (5 genomes, 386 marker sets)</option><option value="51229">Wigglesworthia glossinidia (2 genomes, 9 marker sets)</option><option value="400946">Wohlfahrtiimonas chitiniclastica (2 genomes, 78 marker sets)</option><option value="263437">Wolbachia endosymbiont of Culex quinquefasciatus (2 genomes, 56 marker sets)</option><option value="53413">Xanthomonas axonopodis (5 genomes, 365 marker sets)</option><option value="339">Xanthomonas campestris (5 genomes, 336 marker sets)</option><option value="347">Xanthomonas oryzae (3 genomes, 339 marker sets)</option><option value="2371">Xylella fastidiosa (10 genomes, 178 marker sets)</option><option value="630">Yersinia enterocolitica (5 genomes, 316 marker sets)</option><option value="632">Yersinia pestis (20 genomes, 330 marker sets)</option><option value="633">Yersinia pseudotuberculosis (4 genomes, 263 marker sets)</option><option value="542">Zymomonas mobilis (3 genomes, 133 marker sets)</option></select></div> </div> </div> </div> </div> </div> <div class="row"> <div class="checkbox col-xs-12"> <label> <input type="checkbox" id="enable_gtdb" name="enable_gtdb" value="y" > <strong>Perform GTDB Taxonomy Assignment</strong> </label> <span class="text-primary glyphicon glyphicon-question-sign" aria-hidden="true" data-toggle="popover" title="Taxonomy check" data-content=" Taxonomic assignment agaist GTDB Taxonomy. " data-placement="top"></span> </div> </div> <div class="row"> <div class="form-group col-xs-12"> <hr style="margin-bottom: 20px"/> <button type="button" class="btn btn-default" id="showForm"><span id="btnlabel">▼ Advanced Options</span></button> </div> </div> <div id="advanced_options" class="hidden"> <p style="margin-top: 20px" class="lead">General Settings</p> <div class="row" style="margin-left: 20px"> <div class="form"> <div class="form-group col-xs-3"> <label for="organism" class="control-label"><label for="organism">Organism</label></label> <input class="form-control" id="organism" name="organism" placeholder="(optional)" type="text" value=""> </div> <div class="form-group col-xs-3"> <label for="strain" class="control-label"><label for="strain">Strain</label></label> <input class="form-control" id="strain" name="strain" placeholder="(optional)" type="text" value=""> </div> </div> </div> <div class="row" style="margin-left: 20px"> <div class="form"> <div class="form-group col-xs-3"> <label for="locus_tag_prefix" class="control-label"><label for="locus_tag_prefix">Locus tag prefix</label></label> <span class="text-primary glyphicon glyphicon-question-sign" aria-hidden="true" data-toggle="popover" title="" data-content=" Will be used as a prefix of a gene identifier. If you have multiple genomes to annotate, it is recommended to assign unique prefix to each of them to distinguish the data. Note that you need to register an official locus tag prefix if you want to submit the genome to INSDC. The value specified here can be altered later. " data-placement="top"></span> <input class="form-control" id="locus_tag_prefix" label="" name="locus_tag_prefix" placeholder="Alphanumeric with at least 3 characters. Must begin with alphabet." type="" value="LOCUS"> </div> <div class="form-group col-xs-3"> <label for="minimum_length" class="control-label"><label for="minimum_length">Minimum sequence length</label></label> <input class="form-control" id="minimum_length" label="" name="minimum_length" placeholder="200" type="" value="200"> </div> </div> </div> <div class="row" style="margin-left: 20px"> <label class="control-label col-xs-2">Genetic code</label> <div> <label class="radio-inline"> <input type="radio" name="genetic_code" value="11" checked>11 (Standard bacterial/archaeal) </label> <label class="radio-inline"> <input type="radio" name="genetic_code" value="4" >4 (Mycoplasma/Spiroplasma) </label> <label class="radio-inline"> <input type="radio" name="genetic_code" value="25" >25 (Candidate Division SR1 and Gracilibacteria) </label> </div> </div> <div class="row" style="margin-left: 20px"> <div class="col-xs-12" style="margin-top: 10px"> <label> <input type="checkbox" id="sort_sequence" name="sort_sequence" value="y" > Sort sequences by length (longer comes first) </label> </div> </div> <div class="row" style="margin-left: 20px"> <div class="col-xs-12" style="margin-top: 20px"><h5>Fix sequence origin (<span class="text-danger">Advanced, only for a finished genome with a circular chromosome</span>)</h5></div> <div class="col-xs-12" style=""> <label> <input type="checkbox" id="fix_origin" name="fix_origin" value="y" > Rotate/flip the chromosome so that the dnaA gene comes first </label> </div> <div class="col-xs-12 form-inline"> Offset from the start codon of the dnaA gene: <input type="textbox" size=4 style="text-align: right;" class="form-control" id="offset" name="offset" value="100" disabled> bp </div> </div> <p style="margin-top: 20px" class="lead">Structural Annotation</p> <div class="row" style="margin-left: 20px"> <label class="control-label col-xs-1">CDS</label> <div class="col-xs-11" style=""> <label class="radio-inline"> <input type="radio" name="cds_prediction" id="cds_mga" value="" checked>MetaGeneAnnotator (default) </label> <label class="radio-inline"> <input type="radio" name="cds_prediction" id="cds_prodigal" value="prodigal" >Prodigal </label> <label class="radio-inline"> <input type="radio" name="cds_prediction" id="cds_disabled" value="cds_disabled" >Disabled </label> </div> </div> <div class="row" style="margin-left: 20px"> <label class="control-label col-xs-1">rRNA</label> <div class="col-xs-11" style=""> <label class="radio-inline"> <input type="radio" name="rrna_prediction" id="rrna_barrnap" value="" checked>Barrnap (default) </label> <label class="radio-inline"> <input type="radio" name="rrna_prediction" id="rrna_disabled" value="rrna_disabled" >Disabled </label> </div> </div> <div class="row" style="margin-left: 20px"> <label class="control-label col-xs-1">tRNA</label> <div class="col-xs-10" style=""> <label class="radio-inline"> <input type="radio" name="trna_prediction" id="trna_aragorn" value="" checked>Aragorn (default) </label> <label class="radio-inline"> <input type="radio" name="trna_prediction" id="trna_tscanbact" value="trnascan_b" >tRNAscan-SE (Bacteria) </label> <label class="radio-inline"> <input type="radio" name="trna_prediction" id="trna_tscanarch" value="trnascan_a" >tRNAscan-SE (Archaea) </label> <label class="radio-inline"> <input type="radio" name="trna_prediction" id="trna_disabled" value="trna_disabled" >Disabled </label> </div> </div> <div class="row" style="margin-left: 20px"> <label class="control-label col-xs-1">CRISPR</label> <div class="col-xs-10" style=""> <label class="radio-inline"> <input type="radio" name="crispr_prediction" id="crispr_crt" value="" checked>CRT (default) </label> <label class="radio-inline"> <input type="radio" name="crispr_prediction" id="crispr_disabled" value="crispr_disabled" >Disabled </label> </div> </div> <p style="margin-top: 20px"><span class="lead">Organism-specific Database Search (disabled by default)</span> <span class="text-primary glyphicon glyphicon-question-sign" aria-hidden="true" data-toggle="popover" title="" data-content=" If enabled, this will be performed prior to the default database search. If no significant hit is found, the query is subject to the default search. It is recommendable to use more stringent thresholds. " data-placement="top"> </span> </p> <div class="row" style="margin-left: 20px"> <div class="form"> <div class="form-group col-xs-2"> <label for="dataset" class="control-label"><label for="dataset">DB type</label></label> <select class="form-control" id="dataset" label="Additional DB" name="dataset" placeholder="" type=""><option selected value="-">-- Disabled --</option><option value="ecoli">E. coli</option><option value="lab">Lactic acid bacteria</option><option value="cyanobase">CyanoBase</option><option value="bifidobacterium">Bifidobacterium</option><option value="hpylori">H. pylori</option></select> </div> </div> <div class="form"> <div class="form-group col-xs-2"> <label for="evalue_additional" class="control-label"><label for="evalue_additional">E-value</label></label> <select class="form-control" id="evalue_additional" label="" name="evalue_additional" placeholder="" type=""><option selected value="1e-6">1e-6 (default)</option><option value="1e-10">1e-10</option><option value="1e-20">1e-20</option><option value="1e-30">1e-30</option></select> </div> </div> <div class="form"> <div class="form-group col-xs-2"> <label for="pident_additional" class="control-label"><label for="pident_additional">Identity (%)</label></label> <input class="form-control" id="pident_additional" name="pident_additional" placeholder="" type="text" value="0"> </div> </div> <div class="form"> <div class="form-group col-xs-2"> <label for="q_cov_additional" class="control-label"><label for="q_cov_additional">Query coverage (%)</label></label> <input class="form-control" id="q_cov_additional" name="q_cov_additional" placeholder="" type="text" value="75"> </div> </div> <div class="form"> <div class="form-group col-xs-2"> <label for="s_cov_additional" class="control-label"><label for="s_cov_additional">Subject coverage (%)</label></label> <input class="form-control" id="s_cov_additional" name="s_cov_additional" placeholder="" type="text" value="75"> </div> </div> </div> <p style="margin-top: 20px" class="lead">Thresholds for Default Database Search</p> <div class="row" style="margin-left: 20px"> <div class="form"> <div class="form-group col-xs-2"> <label for="evalue" class="control-label"><label for="evalue">E-value</label></label> <select class="form-control" id="evalue" label="" name="evalue" placeholder="" type=""><option selected value="1e-6">1e-6 (default)</option><option value="1e-10">1e-10</option><option value="1e-20">1e-20</option><option value="1e-30">1e-30</option></select> </div> </div> <div class="form"> <div class="form-group col-xs-2"> <label for="pident" class="control-label"><label for="pident">Identity (%)</label></label> <input class="form-control" id="pident" name="pident" placeholder="" type="text" value="0"> </div> </div> <div class="form"> <div class="form-group col-xs-2"> <label for="q_cov" class="control-label"><label for="q_cov">Query coverage (%)</label></label> <input class="form-control" id="q_cov" name="q_cov" placeholder="" type="text" value="75"> </div> </div> <div class="form"> <div class="form-group col-xs-2"> <label for="s_cov" class="control-label"><label for="s_cov">Subject coverage (%)</label></label> <input class="form-control" id="s_cov" name="s_cov" placeholder="" type="text" value="75"> </div> </div> </div> <p style="margin-top: 20px" class="lead">TIGRFAM and COG</p> <p style="margin-left: 30px; margin-top: 0px;"> These options may take time and cause timeout error, when you enable them for a large genome. </p> <div class="row" style="margin-left: 20px"> <div class="col-xs-12" style="margin-top: 0px"> <label> <input type="checkbox" id="enable_hmm" name="enable_hmm" value="y" > Enable HMM scan against TIGRFAM </label> </div> </div> <div class="row" style="margin-left: 20px"> <div class="col-xs-12" style="margin-top: 10px"> <label> <input type="checkbox" id="enable_cdd" name="enable_cdd" value="y" > Enable RPSBLAST against COG </label> </div> </div> <p style="margin-top: 20px" class="lead">Antimicrobial Resistance Genes and Virulence Factors</p> <p style="margin-left: 30px; margin-top: 0px;"> [Beta] Annotation of Antimicrobial Resistance Genes and Virulence Factors using the <a href="https://card.mcmaster.ca/" target="_blank">CARD</a>/<a href="http://www.mgc.ac.cn/VFs/" target="_blank">VFDB</a> reference databases and identification of plasmid-derived contigs using <a href="https://cge.food.dtu.dk/services/PlasmidFinder/" target="_blank">PlasmidFinder</a>. </p> <div class="row" style="margin-left: 20px"> <div class="col-xs-12" style="margin-top: 0px"> <label> <input type="checkbox" id="enable_amr" name="enable_amr" value="y" > Enable annotation of AMR/VFG </label> </div> </div> </div> <div class="row"> <div class="form-group col-xs-12"> <hr style="margin-bottom: 0px; margin-top: 5px"/> </div> </div> <div class="form-group"> <input _name="_submit" class="btn btn-primary btn-sm" id="_submit" name="submit_" type="submit" value="Run"> </div> <input id="csrf_token" name="csrf_token" type="hidden" value="IjVkMzA4NjQ4ZTgzNDdmMWNmODNkYmNmMjE5MGI1ZDVlMzE4OTc2MzQi.Z7T4jQ.EmuVx2f16n_Bh2MRClVq-OdsEwQ"> </form> <div style="margin-top: 20px; margin-bottom: 20px"> <hr style=""/> <h4>Annotation workflow</h4> <h6 class="text-danger">Please visit our <a href="https://github.com/nigyta/dfast_core" target="_blank">GitHub</a> repository for more infomation.</h6> <h5>Feature prediction</h5> <p style="margin-left: 20px">CDS (MetaGeneAnnotator), rRNA (Barrnap), tRNA/tmRNA (Aragorn), CRISPR (CRT) <br> Partial and overlapping features will be cleaned up.</p> <h5>Functional assignment</h5> <ol> <li>Homology search against an additional reference database using the GHOSTX aligner (optional)</li> <li>Homology search against the DFAST default database using the GHOSTX aligner</li> <li>PseudoGeneDetection (internal stop codons and frameshifts)</li> <li>Profile HMM database search against TIGRFAM (optional)</li> <li>RPSBLAST search against COG database from NCBI Conserved Domain Database (optional)</li> </ol> <h5>Output</h5> <ul class="list-unstyled" style="margin-left: 20px"> <li>Standard annotation format (GFF, GenBank)</li> <li>Sequence files in a FASTA format (CDS, protein, RNA)</li> <li>Annotated features in a tabular format</li> <li>Genome and annotation statistics</li> <li>Submission files for DDBJ Mass Submission System</li> </ul> <p> Sorry, the current version of the annotation editor does not fully support all annotated results.<br> i.e. The results of TIGR, COG, and pseudo/framshifted gene annotation will not be shown in the annotation editor.<br> To check those results, please see GenBank- or GFF- formated files.<br> We will improve this in the future version. <br> <br> <p><b>Do you want to customize the workflow?<br> <span style="margin-left: 60px">Try the standalone version <a href="/dfc/distribution/">DFAST-core</a> !</span></b> </p> </div> </div>  </div> </div> <script src="//cdnjs.cloudflare.com/ajax/libs/jquery/1.12.4/jquery.min.js"></script> <script src="//cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.3.7/js/bootstrap.min.js"></script> <script type="text/javascript" src="/static/chosen.jquery.min.js"></script> <script type="text/javascript" src="/static/dqc_form.js"></script> <script type="text/javascript"> $('#demo_mode').change(function(){ if ($(this).is(':checked')) { $('#queryFile').prop('disabled', true); $("#queryFile").val(""); } else { $('#queryFile').prop('disabled', false); } }); $('#showForm').on('click', function (e) { // e.preventDefault(); if ($(this).hasClass('btn-success')){ $(this).removeClass("btn-success"); $(this).addClass("btn-default"); $("#btnlabel").text("▼ Advanced Options"); $("#advanced_options").addClass("hidden"); } else { $(this).removeClass("btn-default"); $(this).addClass("btn-success"); $("#btnlabel").text("▲ Advanced Options"); $("#advanced_options").removeClass("hidden"); } }); $('#fix_origin').change(function(){ if ($(this).is(':checked')) { $('#offset').prop('disabled', false); } else { $('#offset').prop('disabled', true); } }); function set_additional_threshold() { if ($("#dataset").val() === "-") { $('#evalue_additional').prop('disabled', true); $('#pident_additional').prop('disabled', true); $('#q_cov_additional').prop('disabled', true); $('#s_cov_additional').prop('disabled', true); } else { $('#evalue_additional').prop('disabled', false); $('#pident_additional').prop('disabled', false); $('#q_cov_additional').prop('disabled', false); $('#s_cov_additional').prop('disabled', false); } } $('#dataset').change(function () { set_additional_threshold(); }); function set_gcode(gcode) { if (gcode === "25") { $('input[name=cds_prediction]').val(['prodigal']); // $('input[name=trna_prediction]').val(['']); $('#cds_mga').prop('disabled', true); // $('#trna_tscanbact').prop('disabled', true); // $('#trna_tscanarch').prop('disabled', true); } else { $('#cds_mga').prop('disabled', false); // $('#trna_tscanbact').prop('disabled', false); // $('#trna_tscanarch').prop('disabled', false); } }; $('input[name="genetic_code"]:radio').change(function () { var gcode = $(this).val(); set_gcode(gcode) }); $(function () { if ($('input[name=genetic_code]:checked').val() === '4') { set_gcode("4"); } else { set_gcode("11"); } set_additional_threshold(); $('[data-toggle="popover"]').popover(); }); </script> </body> </html>