HCA Collaborative Projects - Chan Zuckerberg Initiative

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</script> <div id="hbspt-form"></div> </div> </div> <section class="section--hero-illustration" id=""> <div class="hero-illustration hero-illustration--small-title"> <div class="hero-text__button"> <a href="https://chanzuckerberg.com/science/programs-resources/cell-science/" target="_self" class="button-cta button-cta-- button-cta--back_minimal " title="Back to Cell Science" aria-label="" > <div class="button-cta__text " >Back to Cell Science</div> <div class="button-cta__arrow cta-arrow cta-arrow--red "> <div class="cta-arrow__bkg"></div> </div> </a> </div> <div class="hero-illustration__container"> <div class="hero-illustration__text"> <div class="hero-illustration__title"> <h1>Collaborative Computational Tools for a Human Cell Atlas</h1> </div> </div> <div class="hero-illustration__image"> <img src="https://chanzuckerberg.com/wp-content/uploads/2020/04/hca-chart.png" /> </div> </div> </div> </section> <section class="section--list"> <div class="lists projects-list" grants-list> <div 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transform="translate(345.000000, 32.000000) scale(1, -1) translate(-345.000000, -32.000000) " points="351 29 345.078496 35 339 29"></polyline> </g> </g> </svg> </span> </legend> </div> <div class="grant-filter-labels filter__labels t-nav-narrow"> <div class="grant-filter-modal" data-filter-name="focus"> <div class="filter-group"> <label class="filter__label" for="bioconductor"> <span>Bioconductor</span> <input id="bioconductor" type="checkbox" value="bioconductor"> </label> <label class="filter__label" for="cell-states"> <span>Cell States</span> <input id="cell-states" type="checkbox" value="cell-states"> </label> <label class="filter__label" for="cell-types"> <span>Cell Types</span> <input id="cell-types" type="checkbox" value="cell-types"> </label> <label class="filter__label" for="compression"> <span>Compression</span> <input id="compression" type="checkbox" value="compression"> </label> <label class="filter__label" for="imaging"> <span>Imaging</span> <input id="imaging" type="checkbox" value="imaging"> </label> <label class="filter__label" for="latent-spaces"> <span>Latent Spaces</span> <input id="latent-spaces" type="checkbox" value="latent-spaces"> </label> <label class="filter__label" for="manifolds"> <span>Manifolds</span> <input id="manifolds" type="checkbox" value="manifolds"> </label> <label class="filter__label" for="multiomics"> <span>Multiomics</span> <input id="multiomics" type="checkbox" value="multiomics"> </label> <label class="filter__label" for="populations"> <span>Populations</span> <input id="populations" type="checkbox" value="populations"> </label> <label class="filter__label" for="portals"> <span>Portals</span> <input id="portals" type="checkbox" value="portals"> </label> <label class="filter__label" for="scale"> <span>Scale</span> <input id="scale" type="checkbox" value="scale"> </label> <label class="filter__label" for="trajectories"> <span>Trajectories</span> <input id="trajectories" type="checkbox" value="trajectories"> </label> </div> </div> </div> </div> </div> <label class="filter__label grants-clear-filter clear-all t-nav-narrow" for="clear-all" tabindex="0"> <span>Clear All</span> <input id="clear-all" type="checkbox" value="clear-filters"> <svg width="19" height="20" xmlns="http://www.w3.org/2000/svg"> <g fill-rule="nonzero" stroke="#000" stroke-width="2" fill="none"> <path d="M1 19L18.143 1M1 1l17.143 18"></path> </g> </svg> </label> </div> </form> </div> <div class="current-grant-filters"> <p class="t-body--medium">Showing <span class="list__count t-body--medium-bold">85</span> <span class="list__current-filters">results</span></p> <div class="current-filter-labels t-nav-narrow"></div> </div> <div class="hca-projects" hca-projects> <div class="hca-projects__copy"> <div class="hca-projects__copy-item is-active" data-project="projects"> <h3 class="hca-projects__heading t-h4--semibold">Projects</h3> <p class="t-body--medium">The goal of the Human Cell Atlas project is to create a shared, open-reference atlas of all cells in the healthy human body as a resource for studies of health and disease. This global endeavor will generate a substantial quantity of molecular and imaging data across a wide range of modalities and spatial scales. To analyze, interpret, and disseminate these data, these projects focus on creating new computational tools, algorithms, visualizations, and benchmark datasets. In the spirit of open, collaborative development, researchers worked together and shared progress with each other to evaluate the strengths of different approaches. <a class="color--red" href="https://cziscience.medium.com/fostering-collaborative-tools-for-science-8b8aa81758a9" target="_blank" rel="noopener">Learn more</a>. </p> </div> <div class="hca-projects__copy-item" data-project="bioconductor"> <h3 class="hca-projects__heading t-h4--semibold">Bioconductor</h3> <p class="t-body--medium">Bioconductor is a widely-used collection of open-source software packages for the genomics community, and these projects focus on enabling these tools to work with Human Cell Atlas data, and better handle the scale and complexity of the data likely to be encountered. </p> </div> <div class="hca-projects__copy-item" data-project="cell-states"> <h3 class="hca-projects__heading t-h4--semibold">Cell States</h3> <p class="t-body--medium">Projects that aim to determine how a particular cell type can vary in gene expression related to stages of the cell cycle. </p> </div> <div class="hca-projects__copy-item" data-project="cell-types"> <h3 class="hca-projects__heading t-h4--semibold">Cell Types</h3> <p class="t-body--medium">Projects focused on the fundamental problem of defining a cell type from single-cell RNA sequencing data, possibly alongside other data modalities, including both algorithmic and ontological challenges. </p> </div> <div class="hca-projects__copy-item" data-project="compression"> <h3 class="hca-projects__heading t-h4--semibold">Compression</h3> <p class="t-body--medium">These projects leverage information theory to design better compression and feature extraction methods for single-cell RNA sequencing data, enabling cheaper storage of larger datasets, and possibly new insights into the structure of the data itself. </p> </div> <div class="hca-projects__copy-item" data-project="imaging"> <h3 class="hca-projects__heading t-h4--semibold">Imaging</h3> <p class="t-body--medium">Approaches using imaging map the spatial distribution of gene expression within cells and across cells within tissues. Computational tools here focus on new algorithms for visualizing and extracting features from these data, and sharing them with other researchers. </p> </div> <div class="hca-projects__copy-item" data-project="latent-spaces"> <h3 class="hca-projects__heading t-h4--semibold">Latent Spaces</h3> <p class="t-body--medium">This group of projects models the diversity of measurements obtained from single-cell RNA sequencing as arising from some latent, low-dimensional representation, and focuses on how to best learn and interpret that representation. </p> </div> <div class="hca-projects__copy-item" data-project="manifolds"> <h3 class="hca-projects__heading t-h4--semibold">Manifolds</h3> <p class="t-body--medium">These projects use concepts from manifold learning to better integrate datasets coming from a variety of sources, normalizing across variability due to noise in order to highlight the signal. </p> </div> <div class="hca-projects__copy-item" data-project="multiomics"> <h3 class="hca-projects__heading t-h4--semibold">Multiomics</h3> <p class="t-body--medium">Projects that incorporate different characteristics of cells, like protein expression, epigenetics, and morphology, into the definition of cell type. </p> </div> <div class="hca-projects__copy-item" data-project="populations"> <h3 class="hca-projects__heading t-h4--semibold">Populations</h3> <p class="t-body--medium">Approaches to population-scale single-cell genomics, including new experimental techniques for higher-throughput measurements, and approaches to solving the related computational challenges. </p> </div> <div class="hca-projects__copy-item" data-project="portals"> <h3 class="hca-projects__heading t-h4--semibold">Portals</h3> <p class="t-body--medium">Projects building portals to data and analyses, including interactive user experiences for browing datasets and interacting with analysis pipelines, as well as novel visualizations to make new kinds of algorithms easier to understand. </p> </div> <div class="hca-projects__copy-item" data-project="scale"> <h3 class="hca-projects__heading t-h4--semibold">Scale</h3> <p class="t-body--medium">These projects leverage new distributed computing methods to enable large-scale computation on the massive single-cell RNA sequencing datasets that the Human Cell Atlas will generate. </p> </div> <div class="hca-projects__copy-item" data-project="trajectories"> <h3 class="hca-projects__heading t-h4--semibold">Trajectories</h3> <p class="t-body--medium">Projects that aim to understand the lineages of cell differentiation — the paths between cell types — based on patterns in gene expression. </p> </div> </div> <div class="hca-projects__visual"> <svg width="323" height="323" viewBox="0 0 323 323" fill="none" xmlns="http://www.w3.org/2000/svg"> <g class="multiomics is-active"> <path opacity="0.6" d="M164.999 58.7582L151.625 21.8635" stroke="#55BACD" stroke-width="4"/> <path opacity="0.6" d="M103.346 302.175L139.065 284.659" stroke="#55BACD" 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146.602C39.8302 146.602 43.8422 142.59 43.8422 137.641C43.8422 132.691 39.8302 128.679 34.8811 128.679C29.932 128.679 25.9199 132.691 25.9199 137.641C25.9199 142.59 29.932 146.602 34.8811 146.602Z" fill="#DE874F" stroke="#424242" stroke-width="0.5"/> <path d="M281.521 129.03C286.47 129.03 290.482 125.018 290.482 120.069C290.482 115.119 286.47 111.107 281.521 111.107C276.572 111.107 272.56 115.119 272.56 120.069C272.56 125.018 276.572 129.03 281.521 129.03Z" fill="#DE874F" stroke="#424242" stroke-width="0.5"/> </g> </svg> </div> </div> <div class="list grant-list no-row-bg is-active" grant-list> <a href="https://chanzuckerberg.com/human-cell-atlas/a-classification-of-cellular-processes-through-aggregation-of-single-cell-gene-expression-trajectories/" class="list__row is-active" data-focus="trajectories"> <div class="project-intro"> <div class="td-searchable t-body--large-med">A Classification of Cellular Processes Through Aggregation of Single-Cell Gene Expression Trajectories</div> <div class="project-labels"> <div> <span class="color--red">Lead Investigator</span> <span class="td-searchable">Josh Stuart</span> </div> <div> <span class="color--red">Institution</span> <span class="td-searchable">University of California, Santa Cruz, United States</span> </div> </div> <div class="list__dash"></div> <div class="project-labels"> <div> <span class="color--red">Focus</span> <span class="td-searchable">Trajectories</span> </div> </div> </div> <div> <div class="button-arrow button-arrow--"> <div class="button-cta__arrow cta-arrow cta-arrow--red"> <div class="cta-arrow__bkg"></div> </div> </div> </div> </a> <a href="https://chanzuckerberg.com/human-cell-atlas/a-comprehensive-benchmark-dataset-for-comparison-of-approaches-used-to-infer-cell-state-transition-dynamics/" class="list__row is-active" data-focus="trajectories"> <div class="project-intro"> <div class="td-searchable t-body--large-med">A Comprehensive Benchmark Dataset for Comparison of Approaches Used to Infer Cell State Transition Dynamics</div> <div class="project-labels"> <div> <span class="color--red">Lead Investigator</span> <span class="td-searchable">Sahand Hormoz</span> </div> <div> <span class="color--red">Institution</span> <span class="td-searchable">Dana-Farber Cancer Institute, United States</span> </div> </div> <div class="list__dash"></div> <div class="project-labels"> <div> <span class="color--red">Focus</span> <span class="td-searchable">Trajectories</span> </div> </div> </div> <div> <div class="button-arrow button-arrow--"> <div class="button-cta__arrow cta-arrow cta-arrow--red"> <div class="cta-arrow__bkg"></div> </div> </div> </div> </a> <a href="https://chanzuckerberg.com/human-cell-atlas/a-force-directed-graph-interface-for-hca-data-visualization-and-exploration/" class="list__row is-active" data-focus="trajectories"> <div class="project-intro"> <div class="td-searchable t-body--large-med">A Force-Directed Graph Interface for HCA Data Visualization and Exploration</div> <div class="project-labels"> <div> <span class="color--red">Lead Investigator</span> <span class="td-searchable">Allon Klein</span> </div> <div> <span class="color--red">Institution</span> <span class="td-searchable">Harvard University, United States</span> </div> </div> <div class="list__dash"></div> <div class="project-labels"> <div> <span class="color--red">Focus</span> <span class="td-searchable">Trajectories</span> </div> </div> </div> <div> <div class="button-arrow button-arrow--"> <div class="button-cta__arrow cta-arrow cta-arrow--red"> <div class="cta-arrow__bkg"></div> </div> </div> </div> </a> <a href="https://chanzuckerberg.com/human-cell-atlas/a-notebook-based-analysis-workspace-for-the-human-cell-atlas/" class="list__row is-active" data-focus="portals"> <div class="project-intro"> <div class="td-searchable t-body--large-med">A Notebook-Based Analysis Workspace for the Human Cell Atlas</div> <div class="project-labels"> <div> <span class="color--red">Lead Investigator</span> <span class="td-searchable">Jill Mesirov</span> </div> <div> <span class="color--red">Institution</span> <span class="td-searchable">University of California, San Diego, United States</span> </div> </div> <div class="list__dash"></div> <div class="project-labels"> <div> <span class="color--red">Focus</span> <span class="td-searchable">Portals</span> </div> </div> </div> <div> <div class="button-arrow button-arrow--"> <div class="button-cta__arrow cta-arrow cta-arrow--red"> <div class="cta-arrow__bkg"></div> </div> </div> </div> </a> <a href="https://chanzuckerberg.com/human-cell-atlas/a-pilot-tertiary-analysis-portal-for-the-human-cell-atlas-2/" class="list__row is-active" data-focus="portals"> <div class="project-intro"> <div class="td-searchable t-body--large-med">A Pilot Tertiary Analysis Portal for the Human Cell Atlas</div> <div class="project-labels"> <div> <span class="color--red">Lead Investigator</span> <span class="td-searchable">Irene Papatheodorou</span> </div> <div> <span class="color--red">Institution</span> <span class="td-searchable">EMBL-EBI, United Kingdom</span> </div> </div> <div class="list__dash"></div> <div class="project-labels"> <div> <span class="color--red">Focus</span> <span class="td-searchable">Portals</span> </div> </div> </div> <div> <div class="button-arrow button-arrow--"> <div class="button-cta__arrow cta-arrow cta-arrow--red"> <div class="cta-arrow__bkg"></div> </div> </div> </div> </a> <a href="https://chanzuckerberg.com/human-cell-atlas/a-pilot-tertiary-analysis-portal-for-the-human-cell-atlas/" class="list__row is-active" data-focus="portals"> <div class="project-intro"> <div class="td-searchable t-body--large-med">A Pilot Tertiary Analysis Portal for the Human Cell Atlas</div> <div class="project-labels"> <div> <span class="color--red">Lead Investigator</span> <span class="td-searchable">Kerstin Meyer</span> </div> <div> <span class="color--red">Institution</span> <span class="td-searchable">Wellcome Sanger Institute, United States</span> </div> </div> <div class="list__dash"></div> <div class="project-labels"> <div> <span class="color--red">Focus</span> <span class="td-searchable">Portals</span> </div> </div> </div> <div> <div class="button-arrow button-arrow--"> <div class="button-cta__arrow cta-arrow cta-arrow--red"> <div class="cta-arrow__bkg"></div> </div> </div> </div> </a> <a href="https://chanzuckerberg.com/human-cell-atlas/accelerating-cross-sample-analysis-of-single-cell-genomic-data-with-adam-and-apache-spark/" class="list__row is-active" data-focus="scale"> <div class="project-intro"> <div class="td-searchable t-body--large-med">Accelerating Cross-Sample Analysis of Single-Cell Genomic Data with Adam and Apache Spark</div> <div class="project-labels"> <div> <span class="color--red">Lead Investigator</span> <span class="td-searchable">Anthony Joseph</span> </div> <div> <span class="color--red">Institution</span> <span class="td-searchable">University of California, Berkeley, United States</span> </div> </div> <div class="list__dash"></div> <div class="project-labels"> <div> <span class="color--red">Focus</span> <span class="td-searchable">Scale</span> </div> </div> </div> <div> <div class="button-arrow button-arrow--"> <div class="button-cta__arrow cta-arrow cta-arrow--red"> <div class="cta-arrow__bkg"></div> </div> </div> </div> </a> <a href="https://chanzuckerberg.com/human-cell-atlas/aligning-biological-manifolds-for-integrated-analysis-of-single-cell-data/" class="list__row is-active" data-focus="manifolds"> <div class="project-intro"> <div class="td-searchable t-body--large-med">Aligning Biological Manifolds for Integrated Analysis of Single-Cell Data</div> <div class="project-labels"> <div> <span class="color--red">Lead Investigator</span> <span class="td-searchable">Rahul Satija</span> </div> <div> <span class="color--red">Institution</span> <span class="td-searchable">New York Genome Center, United States</span> </div> </div> <div class="list__dash"></div> <div class="project-labels"> <div> <span class="color--red">Focus</span> <span class="td-searchable">Manifolds</span> </div> </div> </div> <div> <div class="button-arrow button-arrow--"> <div class="button-cta__arrow cta-arrow cta-arrow--red"> <div class="cta-arrow__bkg"></div> </div> </div> </div> </a> <a href="https://chanzuckerberg.com/human-cell-atlas/aligning-biological-manifolds-for-integrated-analysis-of-single-cell-data-2/" class="list__row is-active" data-focus="manifolds"> <div class="project-intro"> <div class="td-searchable t-body--large-med">Aligning Biological Manifolds for Integrated Analysis of Single-Cell Data</div> <div class="project-labels"> <div> <span class="color--red">Lead Investigator</span> <span class="td-searchable">Oliver Stegle</span> </div> <div> <span class="color--red">Institution</span> <span class="td-searchable">EMBL-EBI, United Kingdom</span> </div> </div> <div class="list__dash"></div> <div class="project-labels"> <div> <span class="color--red">Focus</span> <span class="td-searchable">Manifolds</span> </div> </div> </div> <div> <div class="button-arrow button-arrow--"> <div class="button-cta__arrow cta-arrow cta-arrow--red"> <div class="cta-arrow__bkg"></div> </div> </div> </div> </a> <a href="https://chanzuckerberg.com/human-cell-atlas/an-integrative-analysis-pipeline-for-sequencing-and-imaging-based-gene-expression-data/" class="list__row is-active" data-focus="multiomics"> <div class="project-intro"> <div class="td-searchable t-body--large-med">An Integrative Analysis Pipeline for Sequencing and Imaging-Based Gene Expression Data</div> <div class="project-labels"> <div> <span class="color--red">Lead Investigator</span> <span class="td-searchable">Guo-Cheng Yuan</span> </div> <div> <span class="color--red">Institution</span> <span class="td-searchable">Dana-Farber Cancer Institute, United States</span> </div> </div> <div class="list__dash"></div> <div class="project-labels"> <div> <span class="color--red">Focus</span> <span class="td-searchable">Multiomics</span> </div> </div> </div> <div> <div class="button-arrow button-arrow--"> <div class="button-cta__arrow cta-arrow cta-arrow--red"> <div class="cta-arrow__bkg"></div> </div> </div> </div> </a> <a href="https://chanzuckerberg.com/human-cell-atlas/an-interactive-environment-for-exploratory-analysis-of-large-single-cell-datasets/" class="list__row is-active" data-focus="scale"> <div class="project-intro"> <div class="td-searchable t-body--large-med">An Interactive Environment for Exploratory Analysis of Large Single-Cell Datasets</div> <div class="project-labels"> <div> <span class="color--red">Lead Investigator</span> <span class="td-searchable">Matt Thomson</span> </div> <div> <span class="color--red">Institution</span> <span class="td-searchable">California Institute of Technology, United States</span> </div> </div> <div class="list__dash"></div> <div class="project-labels"> <div> <span class="color--red">Focus</span> <span class="td-searchable">Scale</span> </div> </div> </div> <div> <div class="button-arrow button-arrow--"> <div class="button-cta__arrow cta-arrow cta-arrow--red"> <div class="cta-arrow__bkg"></div> </div> </div> </div> </a> <a href="https://chanzuckerberg.com/human-cell-atlas/an-open-extensible-benchmark-platform-to-evaluate-computational-tools-for-single-cell-differential-expression/" class="list__row is-active" data-focus="cell-types"> <div class="project-intro"> <div class="td-searchable t-body--large-med">An Open, Extensible, Benchmark Platform To Evaluate Computational Tools for Single-Cell Differential Expression</div> <div class="project-labels"> <div> <span class="color--red">Lead Investigator</span> <span class="td-searchable">Matthew Stephens</span> </div> <div> <span class="color--red">Institution</span> <span class="td-searchable">University of Chicago, United States</span> </div> </div> <div class="list__dash"></div> <div class="project-labels"> <div> <span class="color--red">Focus</span> <span class="td-searchable">Cell Types</span> </div> </div> </div> <div> <div class="button-arrow button-arrow--"> <div class="button-cta__arrow cta-arrow cta-arrow--red"> <div class="cta-arrow__bkg"></div> </div> </div> </div> </a> <a href="https://chanzuckerberg.com/human-cell-atlas/analysis-of-molecular-and-cellular-interactions-by-combining-network-algorithms-and-human-insight/" class="list__row is-active" data-focus="cell-types"> <div class="project-intro"> <div class="td-searchable t-body--large-med">Analysis of Molecular and Cellular Interactions by Combining Network Algorithms and Human Insight</div> <div class="project-labels"> <div> <span class="color--red">Lead Investigator</span> <span class="td-searchable">Benjamin Raphael</span> </div> <div> <span class="color--red">Institution</span> <span class="td-searchable">Princeton University, United States</span> </div> </div> <div class="list__dash"></div> <div class="project-labels"> <div> <span class="color--red">Focus</span> <span class="td-searchable">Cell Types</span> </div> </div> </div> <div> <div class="button-arrow button-arrow--"> <div class="button-cta__arrow cta-arrow cta-arrow--red"> <div class="cta-arrow__bkg"></div> </div> </div> </div> </a> <a href="https://chanzuckerberg.com/human-cell-atlas/bayesian-sparse-matrix-factorization-for-multimodal-integration/" class="list__row is-active" data-focus="latent-spaces"> <div class="project-intro"> <div class="td-searchable t-body--large-med">Bayesian Sparse Matrix Factorization for Multimodal Integration</div> <div class="project-labels"> <div> <span class="color--red">Lead Investigator</span> <span class="td-searchable">Elana Fertig</span> </div> <div> <span class="color--red">Institution</span> <span class="td-searchable">Johns Hopkins University, United States</span> </div> </div> <div class="list__dash"></div> <div class="project-labels"> <div> <span class="color--red">Focus</span> <span class="td-searchable">Latent Spaces</span> </div> </div> </div> <div> <div class="button-arrow button-arrow--"> <div class="button-cta__arrow cta-arrow cta-arrow--red"> <div class="cta-arrow__bkg"></div> </div> </div> </div> </a> <a href="https://chanzuckerberg.com/human-cell-atlas/benchmarking-single-cell-rna-sequencing-methods/" class="list__row is-active" data-focus="cell-types"> <div class="project-intro"> <div class="td-searchable t-body--large-med">Benchmarking Single-Cell RNA-sequencing Methods</div> <div class="project-labels"> <div> <span class="color--red">Lead Investigator</span> <span class="td-searchable">Holger Heyn</span> </div> <div> <span class="color--red">Institution</span> <span class="td-searchable">Fundació Centre de Regulació Genòmica (CRG-CNAG), Spain</span> </div> </div> <div class="list__dash"></div> <div class="project-labels"> <div> <span class="color--red">Focus</span> <span class="td-searchable">Cell Types</span> </div> </div> </div> <div> <div class="button-arrow button-arrow--"> <div class="button-cta__arrow cta-arrow cta-arrow--red"> <div class="cta-arrow__bkg"></div> </div> </div> </div> </a> <a href="https://chanzuckerberg.com/human-cell-atlas/bioinformatic-tools-to-assess-and-evaluate-identity-at-single-cell-resolution/" class="list__row is-active" data-focus="cell-types"> <div class="project-intro"> <div class="td-searchable t-body--large-med">Bioinformatic Tools to Assess and Evaluate Identity at Single-Cell Resolution</div> <div class="project-labels"> <div> <span class="color--red">Lead Investigator</span> <span class="td-searchable">Samantha Morris</span> </div> <div> <span class="color--red">Institution</span> <span class="td-searchable">Washington University, United States</span> </div> </div> <div class="list__dash"></div> <div class="project-labels"> <div> <span class="color--red">Focus</span> <span class="td-searchable">Cell Types</span> </div> </div> </div> <div> <div class="button-arrow button-arrow--"> <div class="button-cta__arrow cta-arrow cta-arrow--red"> <div class="cta-arrow__bkg"></div> </div> </div> </div> </a> <a href="https://chanzuckerberg.com/human-cell-atlas/cell-dynamics-portal/" class="list__row is-active" data-focus="trajectories"> <div class="project-intro"> <div class="td-searchable t-body--large-med">Cell Dynamics Portal</div> <div class="project-labels"> <div> <span class="color--red">Lead Investigator</span> <span class="td-searchable">Chris Sander</span> </div> <div> <span class="color--red">Institution</span> <span class="td-searchable">Dana-Farber Cancer Institute, United States</span> </div> </div> <div class="list__dash"></div> <div class="project-labels"> <div> <span class="color--red">Focus</span> <span class="td-searchable">Trajectories</span> </div> </div> </div> <div> <div class="button-arrow button-arrow--"> <div class="button-cta__arrow cta-arrow cta-arrow--red"> <div class="cta-arrow__bkg"></div> </div> </div> </div> </a> <a href="https://chanzuckerberg.com/human-cell-atlas/cell-lineage-tracing-using-somatic-microsatellite-mutations/" class="list__row is-active" data-focus="trajectories"> <div class="project-intro"> <div class="td-searchable t-body--large-med">Cell Lineage Tracing Using Somatic Microsatellite Mutations</div> <div class="project-labels"> <div> <span class="color--red">Lead Investigator</span> <span class="td-searchable">Peter Park</span> </div> <div> <span class="color--red">Institution</span> <span class="td-searchable">Harvard University, United States</span> </div> </div> <div class="list__dash"></div> <div class="project-labels"> <div> <span class="color--red">Focus</span> <span class="td-searchable">Trajectories</span> </div> </div> </div> <div> <div class="button-arrow button-arrow--"> <div class="button-cta__arrow cta-arrow cta-arrow--red"> <div class="cta-arrow__bkg"></div> </div> </div> </div> </a> <a href="https://chanzuckerberg.com/human-cell-atlas/cellbench-generating-data-and-software-for-comparing-single-cell-analysis-methods/" class="list__row is-active" data-focus="multiomics"> <div class="project-intro"> <div class="td-searchable t-body--large-med">Cellbench: Generating Data and Software for Comparing Single-Cell Analysis Methods</div> <div class="project-labels"> <div> <span class="color--red">Lead Investigator</span> <span class="td-searchable">Matthew Ritchie</span> </div> <div> <span class="color--red">Institution</span> <span class="td-searchable">Walter and Eliza Hall Institute, Australia</span> </div> </div> <div class="list__dash"></div> <div class="project-labels"> <div> <span class="color--red">Focus</span> <span class="td-searchable">Multiomics</span> </div> </div> </div> <div> <div class="button-arrow button-arrow--"> <div class="button-cta__arrow cta-arrow cta-arrow--red"> <div class="cta-arrow__bkg"></div> </div> </div> </div> </a> <a href="https://chanzuckerberg.com/human-cell-atlas/combining-crowdsourcing-and-machine-learning-for-image-segmentation-and-to-define-cell-type/" class="list__row is-active" data-focus="latent-spaces"> <div class="project-intro"> <div class="td-searchable t-body--large-med">Combining Crowdsourcing and Machine Learning for Image Segmentation and to Define Cell Type</div> <div class="project-labels"> <div> <span class="color--red">Lead Investigator</span> <span class="td-searchable">Arjun Raj</span> </div> <div> <span class="color--red">Institution</span> <span class="td-searchable">University of Pennsylvania, United States</span> </div> </div> <div class="list__dash"></div> <div class="project-labels"> <div> <span class="color--red">Focus</span> <span class="td-searchable">Latent Spaces</span> </div> </div> </div> <div> <div class="button-arrow button-arrow--"> <div class="button-cta__arrow cta-arrow cta-arrow--red"> <div class="cta-arrow__bkg"></div> </div> </div> </div> </a> <a href="https://chanzuckerberg.com/human-cell-atlas/comparative-workbench-for-atlas-data-2/" class="list__row is-active" data-focus="imaging"> <div class="project-intro"> <div class="td-searchable t-body--large-med">Comparative Workbench for Atlas Data</div> <div class="project-labels"> <div> <span class="color--red">Lead Investigator</span> <span class="td-searchable">Albert Burger</span> </div> <div> <span class="color--red">Institution</span> <span class="td-searchable">Heriot-Watt University, United Kingdom</span> </div> </div> <div class="list__dash"></div> <div class="project-labels"> <div> <span class="color--red">Focus</span> <span class="td-searchable">Imaging</span> </div> </div> </div> <div> <div class="button-arrow button-arrow--"> <div class="button-cta__arrow cta-arrow cta-arrow--red"> <div class="cta-arrow__bkg"></div> </div> </div> </div> </a> <a href="https://chanzuckerberg.com/human-cell-atlas/comparative-workbench-for-atlas-data/" class="list__row is-active" data-focus="imaging"> <div class="project-intro"> <div class="td-searchable t-body--large-med">Comparative Workbench for Atlas Data</div> <div class="project-labels"> <div> <span class="color--red">Lead Investigator</span> <span class="td-searchable">Mark Arends</span> </div> <div> <span class="color--red">Institution</span> <span class="td-searchable">University of Edinburgh, United Kingdom</span> </div> </div> <div class="list__dash"></div> <div class="project-labels"> <div> <span class="color--red">Focus</span> <span class="td-searchable">Imaging</span> </div> </div> </div> <div> <div class="button-arrow button-arrow--"> <div class="button-cta__arrow cta-arrow cta-arrow--red"> <div class="cta-arrow__bkg"></div> </div> </div> </div> </a> <a href="https://chanzuckerberg.com/human-cell-atlas/compression-of-structural-cartographic-and-multimodal-cell-data/" class="list__row is-active" data-focus="compression"> <div class="project-intro"> <div class="td-searchable t-body--large-med">Compression of Structural, Cartographic, and Multimodal Cell Data</div> <div class="project-labels"> <div> <span class="color--red">Lead Investigator</span> <span class="td-searchable">Lav Varshney</span> </div> <div> <span class="color--red">Institution</span> <span class="td-searchable">University of Illinois, Urbana-Champaign, United States</span> </div> </div> <div class="list__dash"></div> <div class="project-labels"> <div> <span class="color--red">Focus</span> <span class="td-searchable">Compression</span> </div> </div> </div> <div> <div class="button-arrow button-arrow--"> <div class="button-cta__arrow cta-arrow cta-arrow--red"> <div class="cta-arrow__bkg"></div> </div> </div> </div> </a> <a href="https://chanzuckerberg.com/human-cell-atlas/computational-inference-of-the-impact-of-perturbations-on-cell-state/" class="list__row is-active" data-focus="cell-states"> <div class="project-intro"> <div class="td-searchable t-body--large-med">Computational Inference of the Impact of Perturbations on Cell State</div> <div class="project-labels"> <div> <span class="color--red">Lead Investigator</span> <span class="td-searchable">Gerald Quon</span> </div> <div> <span class="color--red">Institution</span> <span class="td-searchable">University of California, Davis, United States</span> </div> </div> <div class="list__dash"></div> <div class="project-labels"> <div> <span class="color--red">Focus</span> <span class="td-searchable">Cell States</span> </div> </div> </div> <div> <div class="button-arrow button-arrow--"> <div class="button-cta__arrow cta-arrow cta-arrow--red"> <div class="cta-arrow__bkg"></div> </div> </div> </div> </a> <a href="https://chanzuckerberg.com/human-cell-atlas/computational-methods-for-single-cell-analysis-of-genetic-effects-on-gene-expression/" class="list__row is-active" data-focus="populations"> <div class="project-intro"> <div class="td-searchable t-body--large-med">Computational Methods for Single-Cell Analysis of Genetic Effects on Gene Expression</div> <div class="project-labels"> <div> <span class="color--red">Lead Investigator</span> <span class="td-searchable">Alexis Battle</span> </div> <div> <span class="color--red">Institution</span> <span class="td-searchable">Johns Hopkins University, United States</span> </div> </div> <div class="list__dash"></div> <div class="project-labels"> <div> <span class="color--red">Focus</span> <span class="td-searchable">Populations</span> </div> </div> </div> <div> <div class="button-arrow button-arrow--"> <div class="button-cta__arrow cta-arrow cta-arrow--red"> <div class="cta-arrow__bkg"></div> </div> </div> </div> </a> <a href="https://chanzuckerberg.com/human-cell-atlas/computational-methods-for-single-cell-regulomics-and-integrative-multiomics/" class="list__row is-active" data-focus="multiomics"> <div class="project-intro"> <div class="td-searchable t-body--large-med">Computational Methods for Single-Cell Regulomics and Integrative Multiomics</div> <div class="project-labels"> <div> <span class="color--red">Lead Investigator</span> <span class="td-searchable">William Greenleaf</span> </div> <div> <span class="color--red">Institution</span> <span class="td-searchable">Stanford University, United States</span> </div> </div> <div class="list__dash"></div> <div class="project-labels"> <div> <span class="color--red">Focus</span> <span class="td-searchable">Multiomics</span> </div> </div> </div> <div> <div class="button-arrow button-arrow--"> <div class="button-cta__arrow cta-arrow cta-arrow--red"> <div class="cta-arrow__bkg"></div> </div> </div> </div> </a> <a href="https://chanzuckerberg.com/human-cell-atlas/computational-tools-for-traversing-genes-to-cells-to-disease/" class="list__row is-active" data-focus="scale"> <div class="project-intro"> <div class="td-searchable t-body--large-med">Computational Tools for Traversing Genes to Cells to Disease</div> <div class="project-labels"> <div> <span class="color--red">Lead Investigator</span> <span class="td-searchable">Benjamin Neale</span> </div> <div> <span class="color--red">Institution</span> <span class="td-searchable">Massachusetts General Hospital, United States</span> </div> </div> <div class="list__dash"></div> <div class="project-labels"> <div> <span class="color--red">Focus</span> <span class="td-searchable">Scale</span> </div> </div> </div> <div> <div class="button-arrow button-arrow--"> <div class="button-cta__arrow cta-arrow cta-arrow--red"> <div class="cta-arrow__bkg"></div> </div> </div> </div> </a> <a href="https://chanzuckerberg.com/human-cell-atlas/deep-space-exploration-machine-learning-to-understand-and-annotate-image-based-transcriptomics/" class="list__row is-active" data-focus="imaging"> <div class="project-intro"> <div class="td-searchable t-body--large-med">Deep Space Exploration: Machine Learning to Understand and Annotate Image-Based Transcriptomics</div> <div class="project-labels"> <div> <span class="color--red">Lead Investigator</span> <span class="td-searchable">James Zou</span> </div> <div> <span class="color--red">Institution</span> <span class="td-searchable">Stanford University, United States</span> </div> </div> <div class="list__dash"></div> <div class="project-labels"> <div> <span class="color--red">Focus</span> <span class="td-searchable">Imaging</span> </div> </div> </div> <div> <div class="button-arrow button-arrow--"> <div class="button-cta__arrow cta-arrow cta-arrow--red"> <div class="cta-arrow__bkg"></div> </div> </div> </div> </a> <a href="https://chanzuckerberg.com/human-cell-atlas/detection-and-visualization-of-temporal-partitioned-cellular-states-using-single-cell-analysis/" class="list__row is-active" data-focus="cell-states"> <div class="project-intro"> <div class="td-searchable t-body--large-med">Detection and Visualization of Temporal Partitioned Cellular States Using Single-Cell Analysis</div> <div class="project-labels"> <div> <span class="color--red">Lead Investigator</span> <span class="td-searchable">Benedict Anchang</span> </div> <div> <span class="color--red">Institution</span> <span class="td-searchable">Stanford University, United States</span> </div> </div> <div class="list__dash"></div> <div class="project-labels"> <div> <span class="color--red">Focus</span> <span class="td-searchable">Cell States</span> </div> </div> </div> <div> <div class="button-arrow button-arrow--"> <div class="button-cta__arrow cta-arrow cta-arrow--red"> <div class="cta-arrow__bkg"></div> </div> </div> </div> </a> <a href="https://chanzuckerberg.com/human-cell-atlas/developing-single-cell-interactomes-to-identify-molecular-determinants-of-single-cell-state/" class="list__row is-active" data-focus="cell-states"> <div class="project-intro"> <div class="td-searchable t-body--large-med">Developing Single-Cell Interactomes to Identify Molecular Determinants of Single-Cell State</div> <div class="project-labels"> <div> <span class="color--red">Lead Investigator</span> <span class="td-searchable">Andrea Califano</span> </div> <div> <span class="color--red">Institution</span> <span class="td-searchable">Columbia University, United States</span> </div> </div> <div class="list__dash"></div> <div class="project-labels"> <div> <span class="color--red">Focus</span> <span class="td-searchable">Cell States</span> </div> </div> </div> <div> <div class="button-arrow button-arrow--"> <div class="button-cta__arrow cta-arrow cta-arrow--red"> <div class="cta-arrow__bkg"></div> </div> </div> </div> </a> <a href="https://chanzuckerberg.com/human-cell-atlas/diffusion-and-deep-learning-based-methods-for-exploratory-data-analysis/" class="list__row is-active" data-focus="latent-spaces"> <div class="project-intro"> <div class="td-searchable t-body--large-med">Diffusion and Deep-Learning Based Methods for Exploratory Data Analysis</div> <div class="project-labels"> <div> <span class="color--red">Lead Investigator</span> <span class="td-searchable">Smita Krinshnaswamy</span> </div> <div> <span class="color--red">Institution</span> <span class="td-searchable">Yale University, United States</span> </div> </div> <div class="list__dash"></div> <div class="project-labels"> <div> <span class="color--red">Focus</span> <span class="td-searchable">Latent Spaces</span> </div> </div> </div> <div> <div class="button-arrow button-arrow--"> <div class="button-cta__arrow cta-arrow cta-arrow--red"> <div class="cta-arrow__bkg"></div> </div> </div> </div> </a> <a href="https://chanzuckerberg.com/human-cell-atlas/efficient-and-scalable-single-cell-rna-seq-analysis-pipeline-exploiting-bayesian-non-negative-matrix-factorization/" class="list__row is-active" data-focus="scale"> <div class="project-intro"> <div class="td-searchable t-body--large-med">Efficient and Scalable Single-Cell RNA-seq Analysis Pipeline Exploiting Bayesian Non-Negative Matrix Factorization</div> <div class="project-labels"> <div> <span class="color--red">Lead Investigator</span> <span class="td-searchable">Gad Getz</span> </div> <div> <span class="color--red">Institution</span> <span class="td-searchable">Massachusetts General Hospital, United States</span> </div> </div> <div class="list__dash"></div> <div class="project-labels"> <div> <span class="color--red">Focus</span> <span class="td-searchable">Scale</span> </div> </div> </div> <div> <div class="button-arrow button-arrow--"> <div class="button-cta__arrow cta-arrow cta-arrow--red"> <div class="cta-arrow__bkg"></div> </div> </div> </div> </a> <a href="https://chanzuckerberg.com/human-cell-atlas/efficient-tools-for-quantifying-and-simulating-transcript-level-abundance-in-single-cell-rna-seq/" class="list__row is-active" data-focus="latent-spaces"> <div class="project-intro"> <div class="td-searchable t-body--large-med">Efficient Tools for Quantifying and Simulating Transcript-Level Abundance in Single-Cell RNA-seq</div> <div class="project-labels"> <div> <span class="color--red">Lead Investigator</span> <span class="td-searchable">Robert Patro</span> </div> <div> <span class="color--red">Institution</span> <span class="td-searchable">Stony Brook University, United States</span> </div> </div> <div class="list__dash"></div> <div class="project-labels"> <div> <span class="color--red">Focus</span> <span class="td-searchable">Latent Spaces</span> </div> </div> </div> <div> <div class="button-arrow button-arrow--"> <div class="button-cta__arrow cta-arrow cta-arrow--red"> <div class="cta-arrow__bkg"></div> </div> </div> </div> </a> <a href="https://chanzuckerberg.com/human-cell-atlas/enhancing-the-accessibility-of-large-single-cell-datasets-in-r-bioconductor/" class="list__row is-active" data-focus="bioconductor"> <div class="project-intro"> <div class="td-searchable t-body--large-med">Enhancing the Accessibility of Large Single-Cell Datasets in R / Bioconductor</div> <div class="project-labels"> <div> <span class="color--red">Lead Investigator</span> <span class="td-searchable">John Marioni</span> </div> <div> <span class="color--red">Institution</span> <span class="td-searchable">EMBL-EBI, United Kingdom</span> </div> </div> <div class="list__dash"></div> <div class="project-labels"> <div> <span class="color--red">Focus</span> <span class="td-searchable">Bioconductor</span> </div> </div> </div> <div> <div class="button-arrow button-arrow--"> <div class="button-cta__arrow cta-arrow cta-arrow--red"> <div class="cta-arrow__bkg"></div> </div> </div> </div> </a> <a href="https://chanzuckerberg.com/human-cell-atlas/flexible-statistical-methods-for-differential-analysis-of-single-cell-datasets/" class="list__row is-active" data-focus="cell-types"> <div class="project-intro"> <div class="td-searchable t-body--large-med">Flexible Statistical Methods for Differential Analysis of Single-Cell Datasets</div> <div class="project-labels"> <div> <span class="color--red">Lead Investigator</span> <span class="td-searchable">Mark Robinson</span> </div> <div> <span class="color--red">Institution</span> <span class="td-searchable">University of Zurich, Switzerland</span> </div> </div> <div class="list__dash"></div> <div class="project-labels"> <div> <span class="color--red">Focus</span> <span class="td-searchable">Cell Types</span> </div> </div> </div> <div> <div class="button-arrow button-arrow--"> <div class="button-cta__arrow cta-arrow cta-arrow--red"> <div class="cta-arrow__bkg"></div> </div> </div> </div> </a> <a href="https://chanzuckerberg.com/human-cell-atlas/genome-wide-hypothesis-generation-for-single-cell-expression-via-latent-spaces/" class="list__row is-active" data-focus="latent-spaces"> <div class="project-intro"> <div class="td-searchable t-body--large-med">Genome-Wide Hypothesis Generation for Single-Cell Expression via Latent Spaces</div> <div class="project-labels"> <div> <span class="color--red">Lead Investigator</span> <span class="td-searchable">Casey Greene</span> </div> <div> <span class="color--red">Institution</span> <span class="td-searchable">University of Pennsylvania, United States</span> </div> </div> <div class="list__dash"></div> <div class="project-labels"> <div> <span class="color--red">Focus</span> <span class="td-searchable">Latent Spaces</span> </div> </div> </div> <div> <div class="button-arrow button-arrow--"> <div class="button-cta__arrow cta-arrow cta-arrow--red"> <div class="cta-arrow__bkg"></div> </div> </div> </div> </a> <a href="https://chanzuckerberg.com/human-cell-atlas/human-cell-atlas-integration-with-the-cytoscape-ecosystem-for-analysis-of-scrna-seq-data/" class="list__row is-active" data-focus="portals"> <div class="project-intro"> <div class="td-searchable t-body--large-med">Human Cell Atlas Integration with the Cytoscape Ecosystem for Analysis of scRNA-seq Data</div> <div class="project-labels"> <div> <span class="color--red">Lead Investigator</span> <span class="td-searchable">John Morris</span> </div> <div> <span class="color--red">Institution</span> <span class="td-searchable">University of California, San Francisco, United States</span> </div> </div> <div class="list__dash"></div> <div class="project-labels"> <div> <span class="color--red">Focus</span> <span class="td-searchable">Portals</span> </div> </div> </div> <div> <div class="button-arrow button-arrow--"> <div class="button-cta__arrow cta-arrow cta-arrow--red"> <div class="cta-arrow__bkg"></div> </div> </div> </div> </a> <a href="https://chanzuckerberg.com/human-cell-atlas/human-cell-atlas-methods-registry/" class="list__row is-active" data-focus="portals"> <div class="project-intro"> <div class="td-searchable t-body--large-med">Human Cell Atlas Methods Registry</div> <div class="project-labels"> <div> <span class="color--red">Lead Investigator</span> <span class="td-searchable">Timothy Tickle</span> </div> <div> <span class="color--red">Institution</span> <span class="td-searchable">The Broad Institute of MIT and Harvard, United States</span> </div> </div> <div class="list__dash"></div> <div class="project-labels"> <div> <span class="color--red">Focus</span> <span class="td-searchable">Portals</span> </div> </div> </div> <div> <div class="button-arrow button-arrow--"> <div class="button-cta__arrow cta-arrow cta-arrow--red"> <div class="cta-arrow__bkg"></div> </div> </div> </div> </a> <a href="https://chanzuckerberg.com/human-cell-atlas/identifying-genetic-markers-dimension-reduction-and-feature-selection-for-sparse-data/" class="list__row is-active" data-focus="cell-types"> <div class="project-intro"> <div class="td-searchable t-body--large-med">Identifying Genetic Markers: Dimension Reduction and Feature Selection for Sparse Data</div> <div class="project-labels"> <div> <span class="color--red">Lead Investigator</span> <span class="td-searchable">Anna Gilbert</span> </div> <div> <span class="color--red">Institution</span> <span class="td-searchable">University of Michigan, United States</span> </div> </div> <div class="list__dash"></div> <div class="project-labels"> <div> <span class="color--red">Focus</span> <span class="td-searchable">Cell Types</span> </div> </div> </div> <div> <div class="button-arrow button-arrow--"> <div class="button-cta__arrow cta-arrow cta-arrow--red"> <div class="cta-arrow__bkg"></div> </div> </div> </div> </a> <a href="https://chanzuckerberg.com/human-cell-atlas/image-data-resources-and-applications-for-the-human-cell-atlas/" class="list__row is-active" data-focus="imaging"> <div class="project-intro"> <div class="td-searchable t-body--large-med">Image Data Resources and Applications for the Human Cell Atlas</div> <div class="project-labels"> <div> <span class="color--red">Lead Investigator</span> <span class="td-searchable">Eric Banks</span> </div> <div> <span class="color--red">Institution</span> <span class="td-searchable">The Broad Institute of MIT and Harvard, United States</span> </div> </div> <div class="list__dash"></div> <div class="project-labels"> <div> <span class="color--red">Focus</span> <span class="td-searchable">Imaging</span> </div> </div> </div> <div> <div class="button-arrow button-arrow--"> <div class="button-cta__arrow cta-arrow cta-arrow--red"> <div class="cta-arrow__bkg"></div> </div> </div> </div> </a> <a href="https://chanzuckerberg.com/human-cell-atlas/image-data-resources-and-applications-for-the-human-cell-atlas-2/" class="list__row is-active" data-focus="imaging"> <div class="project-intro"> <div class="td-searchable t-body--large-med">Image Data Resources and Applications for the Human Cell Atlas</div> <div class="project-labels"> <div> <span class="color--red">Lead Investigator</span> <span class="td-searchable">Jason Swedlow</span> </div> <div> <span class="color--red">Institution</span> <span class="td-searchable">University of Dundee, United Kingdom</span> </div> </div> <div class="list__dash"></div> <div class="project-labels"> <div> <span class="color--red">Focus</span> <span class="td-searchable">Imaging</span> </div> </div> </div> <div> <div class="button-arrow button-arrow--"> <div class="button-cta__arrow cta-arrow cta-arrow--red"> <div class="cta-arrow__bkg"></div> </div> </div> </div> </a> <a href="https://chanzuckerberg.com/human-cell-atlas/inferring-the-tree-of-cells/" class="list__row is-active" data-focus="trajectories"> <div class="project-intro"> <div class="td-searchable t-body--large-med">Inferring the Tree of Cells</div> <div class="project-labels"> <div> <span class="color--red">Lead Investigator</span> <span class="td-searchable">Martin Hemberg</span> </div> <div> <span class="color--red">Institution</span> <span class="td-searchable">Wellcome Sanger Institute, United Kingdom</span> </div> </div> <div class="list__dash"></div> <div class="project-labels"> <div> <span class="color--red">Focus</span> <span class="td-searchable">Trajectories</span> </div> </div> </div> <div> <div class="button-arrow button-arrow--"> <div class="button-cta__arrow cta-arrow cta-arrow--red"> <div class="cta-arrow__bkg"></div> </div> </div> </div> </a> <a href="https://chanzuckerberg.com/human-cell-atlas/integrating-single-cell-profiles-across-modalities-using-manifold-alignment/" class="list__row is-active" data-focus="manifolds"> <div class="project-intro"> <div class="td-searchable t-body--large-med">Integrating Single-Cell Profiles Across Modalities Using Manifold Alignment</div> <div class="project-labels"> <div> <span class="color--red">Lead Investigator</span> <span class="td-searchable">Joshua Welch</span> </div> <div> <span class="color--red">Institution</span> <span class="td-searchable">University of Michigan, United States</span> </div> </div> <div class="list__dash"></div> <div class="project-labels"> <div> <span class="color--red">Focus</span> <span class="td-searchable">Manifolds</span> </div> </div> </div> <div> <div class="button-arrow button-arrow--"> <div class="button-cta__arrow cta-arrow cta-arrow--red"> <div class="cta-arrow__bkg"></div> </div> </div> </div> </a> <a href="https://chanzuckerberg.com/human-cell-atlas/integrative-multivariate-computational-methods-for-single-cell-assays/" class="list__row is-active" data-focus="multiomics"> <div class="project-intro"> <div class="td-searchable t-body--large-med">Integrative Multivariate Computational Methods for Single-Cell Assays</div> <div class="project-labels"> <div> <span class="color--red">Lead Investigator</span> <span class="td-searchable">Kim-Anh Le Cao</span> </div> <div> <span class="color--red">Institution</span> <span class="td-searchable">University of Melbourne, Australia</span> </div> </div> <div class="list__dash"></div> <div class="project-labels"> <div> <span class="color--red">Focus</span> <span class="td-searchable">Multiomics</span> </div> </div> </div> <div> <div class="button-arrow button-arrow--"> <div class="button-cta__arrow cta-arrow cta-arrow--red"> <div class="cta-arrow__bkg"></div> </div> </div> </div> </a> <a href="https://chanzuckerberg.com/human-cell-atlas/interactive-identification-of-trajectories-in-single-cell-rna-seq/" class="list__row is-active" data-focus="trajectories"> <div class="project-intro"> <div class="td-searchable t-body--large-med">Interactive Identification of Trajectories in Single-Cell RNA-seq</div> <div class="project-labels"> <div> <span class="color--red">Lead Investigator</span> <span class="td-searchable">Fabian Theis</span> </div> <div> <span class="color--red">Institution</span> <span class="td-searchable">Helmholtz Zentrum München, Germany</span> </div> </div> <div class="list__dash"></div> <div class="project-labels"> <div> <span class="color--red">Focus</span> <span class="td-searchable">Trajectories</span> </div> </div> </div> <div> <div class="button-arrow button-arrow--"> <div class="button-cta__arrow cta-arrow cta-arrow--red"> <div class="cta-arrow__bkg"></div> </div> </div> </div> </a> <a href="https://chanzuckerberg.com/human-cell-atlas/joint-analysis-of-single-cell-and-bulk-rna-data-via-matrix-factorization/" class="list__row is-active" data-focus="cell-types"> <div class="project-intro"> <div class="td-searchable t-body--large-med">Joint Analysis of Single-Cell and Bulk RNA Data via Matrix Factorization</div> <div class="project-labels"> <div> <span class="color--red">Lead Investigator</span> <span class="td-searchable">Clayton Scott</span> </div> <div> <span class="color--red">Institution</span> <span class="td-searchable">University of Michigan, United States</span> </div> </div> <div class="list__dash"></div> <div class="project-labels"> <div> <span class="color--red">Focus</span> <span class="td-searchable">Cell Types</span> </div> </div> </div> <div> <div class="button-arrow button-arrow--"> <div class="button-cta__arrow cta-arrow cta-arrow--red"> <div class="cta-arrow__bkg"></div> </div> </div> </div> </a> <a href="https://chanzuckerberg.com/human-cell-atlas/joint-manifold-learning-for-integrated-analysis-of-single-cell-data/" class="list__row is-active" data-focus="manifolds"> <div class="project-intro"> <div class="td-searchable t-body--large-med">Joint Manifold Learning for Integrated Analysis of Single-Cell Data</div> <div class="project-labels"> <div> <span class="color--red">Lead Investigator</span> <span class="td-searchable">John Marioni</span> </div> <div> <span class="color--red">Institution</span> <span class="td-searchable">EMBL-EBI, United Kingdom</span> </div> </div> <div class="list__dash"></div> <div class="project-labels"> <div> <span class="color--red">Focus</span> <span class="td-searchable">Manifolds</span> </div> </div> </div> <div> <div class="button-arrow button-arrow--"> <div class="button-cta__arrow cta-arrow cta-arrow--red"> <div class="cta-arrow__bkg"></div> </div> </div> </div> </a> <a href="https://chanzuckerberg.com/human-cell-atlas/machine-learning-approaches-to-intersect-cellular-images-and-single-cell-rna-seq-data/" class="list__row is-active" data-focus="multiomics"> <div class="project-intro"> <div class="td-searchable t-body--large-med">Machine Learning Approaches to Intersect Cellular Images and Single-Cell RNA-seq Data</div> <div class="project-labels"> <div> <span class="color--red">Lead Investigator</span> <span class="td-searchable">Barbara Engelhardt</span> </div> <div> <span class="color--red">Institution</span> <span class="td-searchable">Princeton University, United States</span> </div> </div> <div class="list__dash"></div> <div class="project-labels"> <div> <span class="color--red">Focus</span> <span class="td-searchable">Multiomics</span> </div> </div> </div> <div> <div class="button-arrow button-arrow--"> <div class="button-cta__arrow cta-arrow cta-arrow--red"> <div class="cta-arrow__bkg"></div> </div> </div> </div> </a> <a href="https://chanzuckerberg.com/human-cell-atlas/machine-learning-methods-for-fully-exploiting-heterogeneous-multimodal-data/" class="list__row is-active" data-focus="multiomics"> <div class="project-intro"> <div class="td-searchable t-body--large-med">Machine Learning Methods for Fully Exploiting Heterogeneous, Multimodal Data</div> <div class="project-labels"> <div> <span class="color--red">Lead Investigator</span> <span class="td-searchable">Liam Paninski</span> </div> <div> <span class="color--red">Institution</span> <span class="td-searchable">Columbia University, United States</span> </div> </div> <div class="list__dash"></div> <div class="project-labels"> <div> <span class="color--red">Focus</span> <span class="td-searchable">Multiomics</span> </div> </div> </div> <div> <div class="button-arrow button-arrow--"> <div class="button-cta__arrow cta-arrow cta-arrow--red"> <div class="cta-arrow__bkg"></div> </div> </div> </div> </a> <a href="https://chanzuckerberg.com/human-cell-atlas/methods-to-enable-multiplexing-of-single-cell-rna-seq-experiments-in-population-scale/" class="list__row is-active" data-focus="populations"> <div class="project-intro"> <div class="td-searchable t-body--large-med">Methods to Enable Multiplexing of Single-Cell RNA-seq Experiments in Population Scale</div> <div class="project-labels"> <div> <span class="color--red">Lead Investigator</span> <span class="td-searchable">Hyun Min Kang</span> </div> <div> <span class="color--red">Institution</span> <span class="td-searchable">University of Michigan, United States</span> </div> </div> <div class="list__dash"></div> <div class="project-labels"> <div> <span class="color--red">Focus</span> <span class="td-searchable">Populations</span> </div> </div> </div> <div> <div class="button-arrow button-arrow--"> <div class="button-cta__arrow cta-arrow cta-arrow--red"> <div class="cta-arrow__bkg"></div> </div> </div> </div> </a> <a href="https://chanzuckerberg.com/human-cell-atlas/nonparametric-manifold-learning-for-imputation-and-alignment-in-single-cell-rna-sequencing-data/" class="list__row is-active" data-focus="manifolds"> <div class="project-intro"> <div class="td-searchable t-body--large-med">Nonparametric Manifold Learning for Imputation and Alignment in Single-Cell RNA-sequencing Data</div> <div class="project-labels"> <div> <span class="color--red">Lead Investigator</span> <span class="td-searchable">Barbara Engelhardt</span> </div> <div> <span class="color--red">Institution</span> <span class="td-searchable">Princeton University, United States</span> </div> </div> <div class="list__dash"></div> <div class="project-labels"> <div> <span class="color--red">Focus</span> <span class="td-searchable">Manifolds</span> </div> </div> </div> <div> <div class="button-arrow button-arrow--"> <div class="button-cta__arrow cta-arrow cta-arrow--red"> <div class="cta-arrow__bkg"></div> </div> </div> </div> </a> <a href="https://chanzuckerberg.com/human-cell-atlas/pan-omics-single-cell-data-integration-for-joint-cell-type-identification/" class="list__row is-active" data-focus="manifolds"> <div class="project-intro"> <div class="td-searchable t-body--large-med">Pan-Omics Single-Cell Data Integration for Joint Cell Type Identification</div> <div class="project-labels"> <div> <span class="color--red">Lead Investigator</span> <span class="td-searchable">Ken Chen</span> </div> <div> <span class="color--red">Institution</span> <span class="td-searchable">MD Anderson Cancer Center, United States</span> </div> </div> <div class="list__dash"></div> <div class="project-labels"> <div> <span class="color--red">Focus</span> <span class="td-searchable">Manifolds</span> </div> </div> </div> <div> <div class="button-arrow button-arrow--"> <div class="button-cta__arrow cta-arrow cta-arrow--red"> <div class="cta-arrow__bkg"></div> </div> </div> </div> </a> <a href="https://chanzuckerberg.com/human-cell-atlas/portal-for-the-interactive-analysis-of-single-cell-rna-seq-data/" class="list__row is-active" data-focus="portals"> <div class="project-intro"> <div class="td-searchable t-body--large-med">Portal for the Interactive Analysis of Single-Cell RNA-seq Data</div> <div class="project-labels"> <div> <span class="color--red">Lead Investigator</span> <span class="td-searchable">Bart Deplancke</span> </div> <div> <span class="color--red">Institution</span> <span class="td-searchable">EPFL, France</span> </div> </div> <div class="list__dash"></div> <div class="project-labels"> <div> <span class="color--red">Focus</span> <span class="td-searchable">Portals</span> </div> </div> </div> <div> <div class="button-arrow button-arrow--"> <div class="button-cta__arrow cta-arrow cta-arrow--red"> <div class="cta-arrow__bkg"></div> </div> </div> </div> </a> <a href="https://chanzuckerberg.com/human-cell-atlas/probabilistic-methods-for-cell-classification/" class="list__row is-active" data-focus="imaging"> <div class="project-intro"> <div class="td-searchable t-body--large-med">Probabilistic Methods for Cell Classification</div> <div class="project-labels"> <div> <span class="color--red">Lead Investigator</span> <span class="td-searchable">Kenneth Harris</span> </div> <div> <span class="color--red">Institution</span> <span class="td-searchable">University College London, United Kingdom</span> </div> </div> <div class="list__dash"></div> <div class="project-labels"> <div> <span class="color--red">Focus</span> <span class="td-searchable">Imaging</span> </div> </div> </div> <div> <div class="button-arrow button-arrow--"> <div class="button-cta__arrow cta-arrow cta-arrow--red"> <div class="cta-arrow__bkg"></div> </div> </div> </div> </a> <a href="https://chanzuckerberg.com/human-cell-atlas/quantization-and-compressive-learning-methods-for-omics-data-3/" class="list__row is-active" data-focus="compression"> <div class="project-intro"> <div class="td-searchable t-body--large-med">Quantization and Compressive Learning Methods for Omics Data</div> <div class="project-labels"> <div> <span class="color--red">Lead Investigator</span> <span class="td-searchable">Idoia Ochoa</span> </div> <div> <span class="color--red">Institution</span> <span class="td-searchable">University of Illinois, Urbana-Champaign, United States</span> </div> </div> <div class="list__dash"></div> <div class="project-labels"> <div> <span class="color--red">Focus</span> <span class="td-searchable">Compression</span> </div> </div> </div> <div> <div class="button-arrow button-arrow--"> <div class="button-cta__arrow cta-arrow cta-arrow--red"> <div class="cta-arrow__bkg"></div> </div> </div> </div> </a> <a href="https://chanzuckerberg.com/human-cell-atlas/quantization-and-compressive-learning-methods-for-omics-data-2/" class="list__row is-active" data-focus="compression"> <div class="project-intro"> <div class="td-searchable t-body--large-med">Quantization and Compressive Learning Methods for Omics Data</div> <div class="project-labels"> <div> <span class="color--red">Lead Investigator</span> <span class="td-searchable">Olgica Milenkovic</span> </div> <div> <span class="color--red">Institution</span> <span class="td-searchable">University of Illinois, Urbana-Champaign, United States</span> </div> </div> <div class="list__dash"></div> <div class="project-labels"> <div> <span class="color--red">Focus</span> <span class="td-searchable">Compression</span> </div> </div> </div> <div> <div class="button-arrow button-arrow--"> <div class="button-cta__arrow cta-arrow cta-arrow--red"> <div class="cta-arrow__bkg"></div> </div> </div> </div> </a> <a href="https://chanzuckerberg.com/human-cell-atlas/quantization-and-compressive-learning-methods-for-omics-data/" class="list__row is-active" data-focus="compression"> <div class="project-intro"> <div class="td-searchable t-body--large-med">Quantization and Compressive Learning Methods for Omics Data</div> <div class="project-labels"> <div> <span class="color--red">Lead Investigator</span> <span class="td-searchable">Mikel Hernaez</span> </div> <div> <span class="color--red">Institution</span> <span class="td-searchable">University of Illinois, Urbana-Champaign, United States</span> </div> </div> <div class="list__dash"></div> <div class="project-labels"> <div> <span class="color--red">Focus</span> <span class="td-searchable">Compression</span> </div> </div> </div> <div> <div class="button-arrow button-arrow--"> <div class="button-cta__arrow cta-arrow cta-arrow--red"> <div class="cta-arrow__bkg"></div> </div> </div> </div> </a> <a href="https://chanzuckerberg.com/human-cell-atlas/rapid-exploration-interpretation-and-comparison-of-discrete-basis-vectors-contributing-to-transcriptional-signatures-of-single-cells/" class="list__row is-active" data-focus="latent-spaces"> <div class="project-intro"> <div class="td-searchable t-body--large-med">Rapid Exploration, Interpretation, and Comparison of Discrete Basis Vectors Contributing to Transcriptional Signatures of Single-Cells</div> <div class="project-labels"> <div> <span class="color--red">Lead Investigator</span> <span class="td-searchable">Loyal Goff</span> </div> <div> <span class="color--red">Institution</span> <span class="td-searchable">Johns Hopkins University, United States</span> </div> </div> <div class="list__dash"></div> <div class="project-labels"> <div> <span class="color--red">Focus</span> <span class="td-searchable">Latent Spaces</span> </div> </div> </div> <div> <div class="button-arrow button-arrow--"> <div class="button-cta__arrow cta-arrow cta-arrow--red"> <div class="cta-arrow__bkg"></div> </div> </div> </div> </a> <a href="https://chanzuckerberg.com/human-cell-atlas/reconstruction-of-cellular-trajectories-via-optimal-transport/" class="list__row is-active" data-focus="trajectories"> <div class="project-intro"> <div class="td-searchable t-body--large-med">Reconstruction of Cellular Trajectories via Optimal Transport</div> <div class="project-labels"> <div> <span class="color--red">Lead Investigator</span> <span class="td-searchable">Philippe Rigollet</span> </div> <div> <span class="color--red">Institution</span> <span class="td-searchable">Massachusetts Institute of Technology, United States</span> </div> </div> <div class="list__dash"></div> <div class="project-labels"> <div> <span class="color--red">Focus</span> <span class="td-searchable">Trajectories</span> </div> </div> </div> <div> <div class="button-arrow button-arrow--"> <div class="button-cta__arrow cta-arrow cta-arrow--red"> <div class="cta-arrow__bkg"></div> </div> </div> </div> </a> <a href="https://chanzuckerberg.com/human-cell-atlas/scalable-interactive-analysis-of-single-cell-data-with-apache-spark/" class="list__row is-active" data-focus="scale"> <div class="project-intro"> <div class="td-searchable t-body--large-med">Scalable Interactive Analysis of Single-Cell Data with Apache Spark</div> <div class="project-labels"> <div> <span class="color--red">Lead Investigator</span> <span class="td-searchable">Uri Laserson</span> </div> <div> <span class="color--red">Institution</span> <span class="td-searchable">Ichann at Mount Sinai, United States</span> </div> </div> <div class="list__dash"></div> <div class="project-labels"> <div> <span class="color--red">Focus</span> <span class="td-searchable">Scale</span> </div> </div> </div> <div> <div class="button-arrow button-arrow--"> <div class="button-cta__arrow cta-arrow cta-arrow--red"> <div class="cta-arrow__bkg"></div> </div> </div> </div> </a> <a href="https://chanzuckerberg.com/human-cell-atlas/search-tools-for-larger-scrna-seq-references/" class="list__row is-active" data-focus="portals"> <div class="project-intro"> <div class="td-searchable t-body--large-med">Search Tools for Larger scRNA-seq References</div> <div class="project-labels"> <div> <span class="color--red">Lead Investigator</span> <span class="td-searchable">Martin Hemberg</span> </div> <div> <span class="color--red">Institution</span> <span class="td-searchable">Wellcome Sanger Institute, United Kingdom</span> </div> </div> <div class="list__dash"></div> <div class="project-labels"> <div> <span class="color--red">Focus</span> <span class="td-searchable">Portals</span> </div> </div> </div> <div> <div class="button-arrow button-arrow--"> <div class="button-cta__arrow cta-arrow cta-arrow--red"> <div class="cta-arrow__bkg"></div> </div> </div> </div> </a> <a href="https://chanzuckerberg.com/human-cell-atlas/semantically-coherent-statistically-comparable-representation-of-reference-cell-types/" class="list__row is-active" data-focus="cell-types"> <div class="project-intro"> <div class="td-searchable t-body--large-med">Semantically-Coherent & Statistically-Comparable Representation of Reference Cell Types</div> <div class="project-labels"> <div> <span class="color--red">Lead Investigator</span> <span class="td-searchable">Richard Scheuermann</span> </div> <div> <span class="color--red">Institution</span> <span class="td-searchable">J. Craig Venter Institute, United States</span> </div> </div> <div class="list__dash"></div> <div class="project-labels"> <div> <span class="color--red">Focus</span> <span class="td-searchable">Cell Types</span> </div> </div> </div> <div> <div class="button-arrow button-arrow--"> <div class="button-cta__arrow cta-arrow cta-arrow--red"> <div class="cta-arrow__bkg"></div> </div> </div> </div> </a> <a href="https://chanzuckerberg.com/human-cell-atlas/semi-supervised-generative-autoencoder-models-for-single-cell-data/" class="list__row is-active" data-focus="latent-spaces"> <div class="project-intro"> <div class="td-searchable t-body--large-med">Semi-Supervised Generative Autoencoder Models for Single-Cell Data</div> <div class="project-labels"> <div> <span class="color--red">Lead Investigator</span> <span class="td-searchable">Merja Heinaniemi</span> </div> <div> <span class="color--red">Institution</span> <span class="td-searchable">University of Eastern Finland, Finland</span> </div> 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<div class="project-labels"> <div> <span class="color--red">Focus</span> <span class="td-searchable">Portals</span> </div> </div> </div> <div> <div class="button-arrow button-arrow--"> <div class="button-cta__arrow cta-arrow cta-arrow--red"> <div class="cta-arrow__bkg"></div> </div> </div> </div> </a> <a href="https://chanzuckerberg.com/human-cell-atlas/single-cell-rna-seq-analysis-of-immune-activation-using-iteratively-adjusted-surrogate-variable-analysis/" class="list__row is-active" data-focus="populations"> <div class="project-intro"> <div class="td-searchable t-body--large-med">Single-Cell RNA-seq Analysis of Immune Activation Using Iteratively Adjusted Surrogate Variable Analysis</div> <div class="project-labels"> <div> <span class="color--red">Lead Investigator</span> <span class="td-searchable">Duygu Ucar</span> </div> <div> <span class="color--red">Institution</span> <span class="td-searchable">Jackson Laboratory, United States</span> </div> </div> <div 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class="color--red">Focus</span> <span class="td-searchable">Bioconductor</span> </div> </div> </div> <div> <div class="button-arrow button-arrow--"> <div class="button-cta__arrow cta-arrow cta-arrow--red"> <div class="cta-arrow__bkg"></div> </div> </div> </div> </a> <a href="https://chanzuckerberg.com/human-cell-atlas/statistical-analysis-and-comprehension-of-the-human-cell-atlas-in-r-bioconductor-access-and-scalable-infrastructure-7/" class="list__row is-active" data-focus="bioconductor"> <div class="project-intro"> <div class="td-searchable t-body--large-med">Statistical Analysis and Comprehension of the Human Cell Atlas in R / Bioconductor: Access and Scalable Infrastructure</div> <div class="project-labels"> <div> <span class="color--red">Lead Investigator</span> <span class="td-searchable">Davide Risso</span> </div> <div> <span class="color--red">Institution</span> <span class="td-searchable">Cornell University, United States</span> </div> </div> <div class="list__dash"></div> <div class="project-labels"> <div> <span class="color--red">Focus</span> <span class="td-searchable">Bioconductor</span> </div> </div> </div> <div> <div class="button-arrow button-arrow--"> <div class="button-cta__arrow cta-arrow cta-arrow--red"> <div class="cta-arrow__bkg"></div> </div> </div> </div> </a> <a href="https://chanzuckerberg.com/human-cell-atlas/statistical-analysis-and-comprehension-of-the-human-cell-atlas-in-r-bioconductor-access-and-scalable-infrastructure-6/" class="list__row is-active" data-focus="bioconductor"> <div class="project-intro"> <div class="td-searchable t-body--large-med">Statistical Analysis and Comprehension of the Human Cell Atlas in R / Bioconductor: Access and Scalable Infrastructure</div> <div class="project-labels"> <div> <span class="color--red">Lead Investigator</span> <span class="td-searchable">Martin Morgan</span> </div> <div> <span class="color--red">Institution</span> <span class="td-searchable">Roswell Park Alliance Foundation, United 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class="td-searchable">Dana-Farber Cancer Institute, United States</span> </div> </div> <div class="list__dash"></div> <div class="project-labels"> <div> <span class="color--red">Focus</span> <span class="td-searchable">Bioconductor</span> </div> </div> </div> <div> <div class="button-arrow button-arrow--"> <div class="button-cta__arrow cta-arrow cta-arrow--red"> <div class="cta-arrow__bkg"></div> </div> </div> </div> </a> <a href="https://chanzuckerberg.com/human-cell-atlas/statistical-analysis-and-comprehension-of-the-human-cell-atlas-in-r-bioconductor-access-and-scalable-infrastructure-4/" class="list__row is-active" data-focus="bioconductor"> <div class="project-intro"> <div class="td-searchable t-body--large-med">Statistical Analysis and Comprehension of the Human Cell Atlas in R / Bioconductor: Access and Scalable Infrastructure</div> <div class="project-labels"> <div> <span class="color--red">Lead Investigator</span> <span class="td-searchable">Wolfgang Huber</span> </div> <div> <span class="color--red">Institution</span> <span class="td-searchable">EMBL-EBI, United Kingdom</span> </div> </div> <div class="list__dash"></div> <div class="project-labels"> <div> <span class="color--red">Focus</span> <span class="td-searchable">Bioconductor</span> </div> </div> </div> <div> <div class="button-arrow button-arrow--"> <div class="button-cta__arrow cta-arrow cta-arrow--red"> <div class="cta-arrow__bkg"></div> </div> </div> </div> </a> <a href="https://chanzuckerberg.com/human-cell-atlas/statistical-analysis-and-comprehension-of-the-human-cell-atlas-in-r-bioconductor-access-and-scalable-infrastructure-3/" class="list__row is-active" data-focus="bioconductor"> <div class="project-intro"> <div class="td-searchable t-body--large-med">Statistical Analysis and Comprehension of the Human Cell Atlas in R / Bioconductor: Access and Scalable Infrastructure</div> <div class="project-labels"> <div> <span class="color--red">Lead Investigator</span> <span class="td-searchable">Kasper Hansen</span> </div> <div> <span class="color--red">Institution</span> <span class="td-searchable">Johns Hopkins University, United States</span> </div> </div> <div class="list__dash"></div> <div class="project-labels"> <div> <span class="color--red">Focus</span> <span class="td-searchable">Bioconductor</span> </div> </div> </div> <div> <div class="button-arrow button-arrow--"> <div class="button-cta__arrow cta-arrow cta-arrow--red"> <div class="cta-arrow__bkg"></div> </div> </div> </div> </a> <a href="https://chanzuckerberg.com/human-cell-atlas/statistical-analysis-and-comprehension-of-the-human-cell-atlas-in-r-bioconductor-access-and-scalable-infrastructure/" class="list__row is-active" data-focus="bioconductor"> <div class="project-intro"> <div class="td-searchable t-body--large-med">Statistical Analysis and Comprehension of the Human Cell Atlas in R / Bioconductor: Access and Scalable Infrastructure</div> <div class="project-labels"> <div> <span class="color--red">Lead Investigator</span> <span class="td-searchable">Vincent Carey</span> </div> <div> <span class="color--red">Institution</span> <span class="td-searchable">Brigham and Women’s Hospital, United States</span> </div> </div> <div class="list__dash"></div> <div class="project-labels"> <div> <span class="color--red">Focus</span> <span class="td-searchable">Bioconductor</span> </div> </div> </div> <div> <div class="button-arrow button-arrow--"> <div class="button-cta__arrow cta-arrow cta-arrow--red"> <div class="cta-arrow__bkg"></div> </div> </div> </div> </a> <a href="https://chanzuckerberg.com/human-cell-atlas/statistical-methods-for-characterizing-gene-regulatory-networks-from-single-cell-sequencing-data/" class="list__row is-active" data-focus="cell-states"> <div class="project-intro"> <div class="td-searchable t-body--large-med">Statistical Methods for Characterizing Gene Regulatory Networks from Single-Cell Sequencing Data</div> <div class="project-labels"> <div> <span class="color--red">Lead Investigator</span> <span class="td-searchable">Harri Lahdesmaki</span> </div> <div> <span class="color--red">Institution</span> <span class="td-searchable">Aalto University, Finland</span> </div> </div> <div class="list__dash"></div> <div class="project-labels"> <div> <span class="color--red">Focus</span> <span class="td-searchable">Cell States</span> </div> </div> </div> <div> <div class="button-arrow button-arrow--"> <div class="button-cta__arrow cta-arrow cta-arrow--red"> <div class="cta-arrow__bkg"></div> </div> </div> </div> </a> <a href="https://chanzuckerberg.com/human-cell-atlas/strategies-for-lineage-trajectory-reconstruction-with-single-cell-multiomic-data/" class="list__row is-active" data-focus="trajectories"> <div class="project-intro"> <div class="td-searchable t-body--large-med">Strategies for Lineage Trajectory Reconstruction with Single-Cell Multiomic Data</div> <div class="project-labels"> <div> <span class="color--red">Lead 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