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Update README.md · PLOS/plos-thesaurus@b09626e · GitHub
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class="HeaderMenu-link border-0 width-full width-lg-auto px-0 px-lg-2 py-lg-2 no-wrap d-flex flex-items-center flex-justify-between js-details-target" aria-expanded="false"> Resources <svg opacity="0.5" aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-chevron-down HeaderMenu-icon ml-1"> <path d="M12.78 5.22a.749.749 0 0 1 0 1.06l-4.25 4.25a.749.749 0 0 1-1.06 0L3.22 6.28a.749.749 0 1 1 1.06-1.06L8 8.939l3.72-3.719a.749.749 0 0 1 1.06 0Z"></path> </svg> </button> <div class="HeaderMenu-dropdown dropdown-menu rounded m-0 p-0 pt-2 pt-lg-4 position-relative position-lg-absolute left-0 left-lg-n3 pb-2 pb-lg-4 d-lg-flex flex-wrap dropdown-menu-wide"> <div class="HeaderMenu-column px-lg-4 border-lg-right mb-4 mb-lg-0 pr-lg-7"> <div class="border-bottom pb-3 pb-lg-0 border-lg-bottom-0"> <span class="d-block h4 color-fg-default my-1" id="resources-topics-heading">Topics</span> <ul class="list-style-none f5" 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class="HeaderMenu-dropdown dropdown-menu rounded m-0 p-0 pt-2 pt-lg-4 position-relative position-lg-absolute left-0 left-lg-n3 pb-2 pb-lg-4 px-lg-4"> <div class="HeaderMenu-column"> <div class="border-bottom pb-3 pb-lg-0 pb-lg-3 mb-3 mb-lg-0 mb-lg-3"> <ul class="list-style-none f5" > <li> <a class="HeaderMenu-dropdown-link d-block no-underline position-relative py-2 Link--secondary d-flex flex-items-center Link--has-description" data-analytics-event="{"location":"navbar","action":"github_sponsors","context":"open_source","tag":"link","label":"github_sponsors_link_open_source_navbar"}" href="/sponsors"> <div> <div class="color-fg-default h4">GitHub Sponsors</div> Fund open source developers </div> </a></li> </ul> </div> <div class="border-bottom pb-3 pb-lg-0 pb-lg-3 mb-3 mb-lg-0 mb-lg-3"> <ul class="list-style-none f5" > <li> <a class="HeaderMenu-dropdown-link d-block no-underline position-relative py-2 Link--secondary d-flex flex-items-center Link--has-description" 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color-fg-muted px-3 text-small color-bg-default search-feedback-prompt"> <a target="_blank" href="https://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax" data-view-component="true" class="Link color-fg-accent text-normal ml-2"> Search syntax tips </a> <div class="d-flex flex-1"></div> </div> </div> </div> </div> </modal-dialog></div> </div> <div data-action="click:qbsearch-input#retract" class="dark-backdrop position-fixed" hidden data-target="qbsearch-input.darkBackdrop"></div> <div class="color-fg-default"> <dialog-helper> <dialog data-target="qbsearch-input.feedbackDialog" data-action="close:qbsearch-input#handleDialogClose cancel:qbsearch-input#handleDialogClose" id="feedback-dialog" aria-modal="true" aria-labelledby="feedback-dialog-title" aria-describedby="feedback-dialog-description" data-view-component="true" class="Overlay Overlay-whenNarrow Overlay--size-medium Overlay--motion-scaleFade Overlay--disableScroll"> <div 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--></option></form><form id="code-search-feedback-form" data-turbo="false" action="/search/feedback" accept-charset="UTF-8" method="post"><input type="hidden" data-csrf="true" name="authenticity_token" value="EH+6e2RfHUykOiTryFSoUri+n0R4k7snkpsHDEIBb7vToWu1XGp+Vk1dwvyfwoq89sMZkxsEzNseE0r38a/5Ug==" /> <p>We read every piece of feedback, and take your input very seriously.</p> <textarea name="feedback" class="form-control width-full mb-2" style="height: 120px" id="feedback"></textarea> <input name="include_email" id="include_email" aria-label="Include my email address so I can be contacted" class="form-control mr-2" type="checkbox"> <label for="include_email" style="font-weight: normal">Include my email address so I can be contacted</label> </form></div> </scrollable-region> <div data-view-component="true" class="Overlay-footer Overlay-footer--alignEnd"> <button data-close-dialog-id="feedback-dialog" type="button" data-view-component="true" class="btn"> Cancel </button> <button 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<div class="clearfix container-xl px-3 px-md-4 px-lg-5 mt-4"> <div class="Subhead"> <h2 class="Subhead-heading">Commit</h2> </div> <a href="/PLOS/plos-thesaurus/commit/b09626ef4ecf42bcf8cf25d9d43812ad48578113" class="d-none js-permalink-shortcut" data-hotkey="y">Permalink</a> <div id="spoof-warning" class="mt-0 pb-3" hidden aria-hidden> <div data-view-component="true" class="flash flash-warn mt-0 clearfix"> <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-alert float-left mt-1"> <path d="M6.457 1.047c.659-1.234 2.427-1.234 3.086 0l6.082 11.378A1.75 1.75 0 0 1 14.082 15H1.918a1.75 1.75 0 0 1-1.543-2.575Zm1.763.707a.25.25 0 0 0-.44 0L1.698 13.132a.25.25 0 0 0 .22.368h12.164a.25.25 0 0 0 .22-.368Zm.53 3.996v2.5a.75.75 0 0 1-1.5 0v-2.5a.75.75 0 0 1 1.5 0ZM9 11a1 1 0 1 1-2 0 1 1 0 0 1 2 0Z"></path> </svg> <div class="overflow-hidden">This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.</div> </div></div> <div class="commit full-commit mt-0 px-2 pt-2 "> <div class="d-flex flex-justify-between gap-2"> <div class="d-flex"> <span class="mr-1" style="height: 24px"> </span> <div class="commit-title markdown-title"> Update README.md </div> </div> <a id="browse-at-time-link" href="/PLOS/plos-thesaurus/tree/b09626ef4ecf42bcf8cf25d9d43812ad48578113" class="btn flex-self-start" rel="nofollow">Browse files</a> <tool-tip id="tooltip-6ee68c42-2d5b-46ce-9661-e827b4139d5e" for="browse-at-time-link" popover="manual" data-direction="ne" data-type="description" data-view-component="true" class="sr-only position-absolute">Browse the repository at this point in the history</tool-tip> </div> <div class="commit-desc"><pre>Make Access innovations link.</pre></div> <div class="commit-branches pb-2"> <include-fragment src="/PLOS/plos-thesaurus/branch_commits/b09626ef4ecf42bcf8cf25d9d43812ad48578113" id="async-branches-list"> <div class="pt-2"> <svg 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The Subject Areas belong to a thesaurus of over 10,000 terms initially built for us over the course of 2012 by Access Innovations<span class="x x-first x-last"> </span>(<span class="pl-corl">http://www.accessinn.com/</span>). The 2012 thesaurus was based on the controlled vocabulary of classification terms that had been in use in PLOS Editorial Manager augmented by a specialist Science, Technology, Engineering and Medicine thesaurus built by Access Innovations. The entire corpus of PLOS articles was analysed to ensure that the thesaurus covers the research domain comprehensively.</span></td> </tr> <tr data-hunk="0a508202cce614a2270fb0ff3dc75590945b0744e6fda3863c4d40eb47c27de9" class="show-top-border"> <td class="blob-num blob-num-addition empty-cell"></td> <td id="diff-b335630551682c19a781afebcf4d07bf978fb1f8ac04c6bf87428ed5106870f5R3" data-line-number="3" class="blob-num blob-num-addition js-linkable-line-number js-code-nav-line-number js-blob-rnum"></td> <td class="blob-code blob-code-addition js-file-line"> <span class='blob-code-inner blob-code-marker js-code-nav-pass ' data-code-marker="+">The "Subject Areas" panel on each article page displays a set of terms selected for that article based on its content. The Subject Areas belong to a thesaurus of over 10,000 terms initially built for us over the course of 2012 by <span class="pl-s x x-first x-last">[</span>Access Innovations<span class="pl-s x x-first x-last">]</span><span class="pl-s">(</span><span class="pl-corl">http://www.accessinn.com/</span><span class="pl-s">)</span>. The 2012 thesaurus was based on the controlled vocabulary of classification terms that had been in use in PLOS Editorial Manager augmented by a specialist Science, Technology, Engineering and Medicine thesaurus built by Access Innovations. The entire corpus of PLOS articles was analysed to ensure that the thesaurus covers the research domain comprehensively.</span></td> </tr> <tr data-hunk="0a508202cce614a2270fb0ff3dc75590945b0744e6fda3863c4d40eb47c27de9" class="show-top-border"> <td id="diff-b335630551682c19a781afebcf4d07bf978fb1f8ac04c6bf87428ed5106870f5L4" data-line-number="4" class="blob-num blob-num-context js-linkable-line-number"></td> <td id="diff-b335630551682c19a781afebcf4d07bf978fb1f8ac04c6bf87428ed5106870f5R4" data-line-number="4" class="blob-num blob-num-context js-linkable-line-number js-code-nav-line-number js-blob-rnum"></td> <td class="blob-code blob-code-context js-file-line"> <span class='blob-code-inner blob-code-marker js-code-nav-pass ' data-code-marker=" "><br></span></td> </tr> <tr data-hunk="0a508202cce614a2270fb0ff3dc75590945b0744e6fda3863c4d40eb47c27de9" class="show-top-border"> <td id="diff-b335630551682c19a781afebcf4d07bf978fb1f8ac04c6bf87428ed5106870f5L5" data-line-number="5" class="blob-num blob-num-context js-linkable-line-number"></td> <td id="diff-b335630551682c19a781afebcf4d07bf978fb1f8ac04c6bf87428ed5106870f5R5" data-line-number="5" class="blob-num blob-num-context js-linkable-line-number js-code-nav-line-number js-blob-rnum"></td> <td class="blob-code blob-code-context js-file-line"> <span class='blob-code-inner blob-code-marker js-code-nav-pass ' data-code-marker=" ">Specific terms are associated with articles by Machine Aided Indexing (MAI) which identifies text strings in the articles and matches them to Subject Area terms from the thesaurus. The output ranks the matches in order of frequency of hits within the text of the article and the top eight terms are selected for display, though the selected Subject Area terms are presented in alphabetical order on article pages.</span></td> </tr> <tr data-hunk="0a508202cce614a2270fb0ff3dc75590945b0744e6fda3863c4d40eb47c27de9" class="show-top-border"> <td id="diff-b335630551682c19a781afebcf4d07bf978fb1f8ac04c6bf87428ed5106870f5L6" data-line-number="6" class="blob-num blob-num-context js-linkable-line-number"></td> <td id="diff-b335630551682c19a781afebcf4d07bf978fb1f8ac04c6bf87428ed5106870f5R6" data-line-number="6" class="blob-num blob-num-context js-linkable-line-number js-code-nav-line-number js-blob-rnum"></td> <td class="blob-code blob-code-context js-file-line"> <span class='blob-code-inner blob-code-marker js-code-nav-pass ' data-code-marker=" "><br></span></td> </tr> <tr class="js-expandable-line js-skip-tagsearch" data-position="8"> <td class="blob-num blob-num-expandable" colspan="2"> <a href="#diff-b335630551682c19a781afebcf4d07bf978fb1f8ac04c6bf87428ed5106870f5" id="expand-link-8-diff-b335630551682c19a781afebcf4d07bf978fb1f8ac04c6bf87428ed5106870f5" class="js-expand directional-expander single-expander" aria-label="Expand All" data-url="/PLOS/plos-thesaurus/blob_excerpt/a43fffa1140951fa48fff9efebea8435beb637b7?diff=unified&in_wiki_context=&last_left=6&last_right=6&left=14&left_hunk_size=4&mode=100644&path=README.md&right=14&right_hunk_size=4" data-left-range="7-9" data-right-range="7-9"> <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-unfold"> <path d="m8.177.677 2.896 2.896a.25.25 0 0 1-.177.427H8.75v1.25a.75.75 0 0 1-1.5 0V4H5.104a.25.25 0 0 1-.177-.427L7.823.677a.25.25 0 0 1 .354 0ZM7.25 10.75a.75.75 0 0 1 1.5 0V12h2.146a.25.25 0 0 1 .177.427l-2.896 2.896a.25.25 0 0 1-.354 0l-2.896-2.896A.25.25 0 0 1 5.104 12H7.25v-1.25Zm-5-2a.75.75 0 0 0 0-1.5h-.5a.75.75 0 0 0 0 1.5h.5ZM6 8a.75.75 0 0 1-.75.75h-.5a.75.75 0 0 1 0-1.5h.5A.75.75 0 0 1 6 8Zm2.25.75a.75.75 0 0 0 0-1.5h-.5a.75.75 0 0 0 0 1.5h.5ZM12 8a.75.75 0 0 1-.75.75h-.5a.75.75 0 0 1 0-1.5h.5A.75.75 0 0 1 12 8Zm2.25.75a.75.75 0 0 0 0-1.5h-.5a.75.75 0 0 0 0 1.5h.5Z"></path> </svg> </a> <tool-tip id="tooltip-f5317c9c-0257-4369-a058-dac09f79cab5" for="expand-link-8-diff-b335630551682c19a781afebcf4d07bf978fb1f8ac04c6bf87428ed5106870f5" popover="manual" data-direction="ne" data-type="label" data-view-component="true" class="sr-only position-absolute">Expand All</tool-tip> </td> <td class="blob-code blob-code-inner blob-code-hunk">@@ -14,4 +14,4 @@ The hierarchical nature of the thesaurus also enhances article retrieval in Sear</td> </tr> <tr data-hunk="5a4ae9ea417ec59654d8cf3818a67c50b223185d816c9538075b7c593c40c4c9" class="show-top-border"> <td id="diff-b335630551682c19a781afebcf4d07bf978fb1f8ac04c6bf87428ed5106870f5L14" data-line-number="14" class="blob-num blob-num-context js-linkable-line-number"></td> <td id="diff-b335630551682c19a781afebcf4d07bf978fb1f8ac04c6bf87428ed5106870f5R14" data-line-number="14" class="blob-num blob-num-context js-linkable-line-number js-code-nav-line-number js-blob-rnum"></td> <td class="blob-code blob-code-context js-file-line"> <span class='blob-code-inner blob-code-marker js-code-nav-pass ' data-code-marker=" "><br></span></td> </tr> <tr data-hunk="5a4ae9ea417ec59654d8cf3818a67c50b223185d816c9538075b7c593c40c4c9" class="show-top-border"> <td id="diff-b335630551682c19a781afebcf4d07bf978fb1f8ac04c6bf87428ed5106870f5L15" data-line-number="15" class="blob-num blob-num-context js-linkable-line-number"></td> <td id="diff-b335630551682c19a781afebcf4d07bf978fb1f8ac04c6bf87428ed5106870f5R15" data-line-number="15" class="blob-num blob-num-context js-linkable-line-number js-code-nav-line-number js-blob-rnum"></td> <td class="blob-code blob-code-context js-file-line"> <span class='blob-code-inner blob-code-marker js-code-nav-pass ' data-code-marker=" ">The Subject Area terms on all article pages are hyperlinked and following the link returns a listing of all articles indexed with that Subject Area term. Subject Area terms can also be used as the basis for Saved Searches, RSS feeds and PLOS ONE customized Journal Alerts.</span></td> </tr> <tr data-hunk="5a4ae9ea417ec59654d8cf3818a67c50b223185d816c9538075b7c593c40c4c9" class="show-top-border"> <td id="diff-b335630551682c19a781afebcf4d07bf978fb1f8ac04c6bf87428ed5106870f5L16" data-line-number="16" class="blob-num blob-num-context js-linkable-line-number"></td> <td id="diff-b335630551682c19a781afebcf4d07bf978fb1f8ac04c6bf87428ed5106870f5R16" data-line-number="16" class="blob-num blob-num-context js-linkable-line-number js-code-nav-line-number js-blob-rnum"></td> <td class="blob-code blob-code-context js-file-line"> <span class='blob-code-inner blob-code-marker js-code-nav-pass ' data-code-marker=" "><br></span></td> </tr> <tr data-hunk="5a4ae9ea417ec59654d8cf3818a67c50b223185d816c9538075b7c593c40c4c9" class="show-top-border"> <td id="diff-b335630551682c19a781afebcf4d07bf978fb1f8ac04c6bf87428ed5106870f5L17" data-line-number="17" class="blob-num blob-num-deletion js-linkable-line-number"></td> <td class="blob-num blob-num-deletion empty-cell"></td> <td class="blob-code blob-code-deletion js-file-line"> <span class='blob-code-inner blob-code-marker js-code-nav-pass js-skip-tagsearch' data-code-marker="-">The content of the PLOS thesaurus and the Rulebase that governs the application of Subject Areas to the articles is constantly under review. We are always happy to receive feedback on Subject Area terms and their application to the PLOS corpus of articles. We update the thesaurus behind the PLOS sites periodically, and are happy to provide a copy of the complete vocabulary on request. Communications about Subject Areas can be sent to <span class="pl-corl">subjectareas@plos.org</span>.</span> <span class="no-nl-marker"> <svg aria-label="No newline at end of file" role="img" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-no-entry"> <path d="M4.25 7.25a.75.75 0 0 0 0 1.5h7.5a.75.75 0 0 0 0-1.5h-7.5Z"></path><path d="M16 8A8 8 0 1 1 0 8a8 8 0 0 1 16 0Zm-1.5 0a6.5 6.5 0 1 0-13 0 6.5 6.5 0 0 0 13 0Z"></path> </svg> </span> </td> </tr> <tr data-hunk="5a4ae9ea417ec59654d8cf3818a67c50b223185d816c9538075b7c593c40c4c9" class="show-top-border"> <td class="blob-num blob-num-addition empty-cell"></td> <td id="diff-b335630551682c19a781afebcf4d07bf978fb1f8ac04c6bf87428ed5106870f5R17" data-line-number="17" class="blob-num blob-num-addition js-linkable-line-number js-code-nav-line-number js-blob-rnum"></td> <td class="blob-code blob-code-addition js-file-line"> <span class='blob-code-inner blob-code-marker js-code-nav-pass ' data-code-marker="+">The content of the PLOS thesaurus and the Rulebase that governs the application of Subject Areas to the articles is constantly under review. We are always happy to receive feedback on Subject Area terms and their application to the PLOS corpus of articles. We update the thesaurus behind the PLOS sites periodically, and are happy to provide a copy of the complete vocabulary on request. Communications about Subject Areas can be sent to <span class="pl-corl">subjectareas@plos.org</span>.</span></td> </tr> </tbody> </table> </div> </div> </div> </copilot-diff-entry> </div> </div> <button type="button" class="js-toggle-all-file-notes" data-hotkey="i" style="display:none">Toggle all file notes</button> <button type="button" class="js-toggle-all-file-annotations" data-hotkey="a" style="display:none">Toggle all file annotations</button> <svg aria-hidden="true" width="100px" height="84px" viewBox="0 0 340 84" version="1.1" xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" class="diff-placeholder-svg position-absolute bottom-0"> <defs> <clippath id="diff-placeholder"> <rect x="0" y="0" width="67.0175439" height="11.9298746" rx="2"></rect> <rect x="18.9473684" y="47.7194983" width="100.701754" height="11.9298746" rx="2"></rect> <rect x="0" y="71.930126" width="37.8947368" height="11.9298746" rx="2"></rect> <rect x="127.017544" y="48.0703769" 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