2018-07-17 | Open Microscopy Environment (OME)

<!doctype html> <html class="no-js" lang="en" dir="ltr"> <head>  <script async src="https://www.googletagmanager.com/gtag/js?id=UA-49953125-6"></script> <script> window.dataLayer = window.dataLayer || []; function gtag(){dataLayer.push(arguments);} gtag('js', new Date()); gtag('config', 'UA-49953125-6'); </script> <meta charset="utf-8" /> <meta http-equiv="x-ua-compatible" content="ie=edge" /> <meta name="viewport" content="width=device-width, initial-scale=1.0" /> <meta name="description" content="" /> <meta property="og:image" content="/img/logos/ome-logo_fb.png" /> <meta property="og:type" content="website" /> <meta property="og:url" content="" /> <meta property="og:title" content="The Open Microscopy Environment" /> <meta property="og:description" content="A consortium of universities, research labs, industry and developers producing open-source software and format standards for microscopy data." /> <meta name="twitter:card" content="summary"> <meta name="twitter:title" content="The Open Microscopy Environment"> <meta name="twitter:image" content="https://www.openmicroscopy.org/img/logos/ome-logomark_twitter.png"> <title>2018-07-17 | Open Microscopy Environment (OME)</title>  <link rel="apple-touch-icon" sizes="180x180" href="/apple-touch-icon.png?v=2"> <link rel="icon" type="image/png" sizes="32x32" href="/favicon-32x32.png?v=2"> <link rel="icon" type="image/png" sizes="16x16" href="/favicon-16x16.png?v=2"> <link rel="manifest" href="/site.webmanifest?v=2"> <link rel="mask-icon" href="/safari-pinned-tab.svg?v=2" color="#5bbad5"> <link rel="shortcut icon" href="/favicon.ico?v=2"> <meta name="msapplication-TileColor" content="#2b5797"> <meta name="theme-color" content="#ffffff">  <link rel="me" href="https://fosstodon.org/@ome"/> <link rel="stylesheet" type="text/css" media="all" href="https://fonts.googleapis.com/css?family=Open+Sans:400,600,700,400italic,600italic,700italic"> <link rel="stylesheet" type="text/css" media="all" href="https://fonts.googleapis.com/css?family=Montserrat:400,500"> <link rel="stylesheet" type="text/css" media="all" href="/css/font-awesome.min.css"> <link rel="stylesheet" type="text/css" media="all" href="/css/foundation.min.css"> <link rel="stylesheet" type="text/css" media="all" href="/css/openmicroscopy.css"> </head> <body> <div class="title-bar" data-responsive-toggle="main-menu" data-hide-for="medium"> <button class="menu-icon" type="button" data-toggle></button> <div class="title-bar-title"></div> </div>  <div class="main-nav-bar top-bar" id="main-menu"> <div class="top-bar-left"> <ul class="vertical medium-horizontal dropdown menu" data-responsive-menu="accordion medium-dropdown"> <li class="hide-for-small-only"><a class="logo" href="/index.html"><img src="/img/logos/ome-main-nav.svg" alt="OME logo" /></a></li> <li class="show-for-small-only"><a href="/index.html"><img src="/img/logos/ome-logomark.svg" alt="OME logo" style="height:32px; 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margin-left: 10px;">Explore</a></li> <li class="show-for-small-only"><a href="/explore/">Explore</a></li> </ul> </div> </div>  <a name="top-of-page"></a>  <div class="callout large primary" id="bg-image-announcements"> <div class="row column text-center"> <h1>2018-07-17</h1> <p></p> </div> </div> <hr class="invisible"> <div class="text-center"> <a id="back-to-top" href="/announcements/"><i class="fa fa-arrow-left"></i> back to Announcements</a> </div> <hr class="invisible"> <div class="row"> <div class="columns"> <p>Dundee: Will, Petr, Kenny, Simon, Jason, Dominik, Mark, Riad,</p> <p>Remote: Melissa, Andreas, David, Emil, Wilma, Liza</p> <p>Start: 2:00 pm</p> <ol> <li> <h2 id="accepting-minutes-from-last-meeting">Accepting minutes from <a href="https://drive.google.com/drive/u/0/folders/0B2ytmM7Jmj58N2gzcWZ6UVJONTA"><u>last meeting</u></a></h2> </li> <li> <h2 id="project-status">Project Status</h2> </li> </ol> <p>(2-3 minutes each)</p> <ul> <li> <p>Summer epics</p> <ul> <li> <p>OMERO 5.4.7</p> <ul> <li> <p>Bio-Formats testing ongoing…</p> </li> <li> <p>Update team via e-mail (lots of team on the road)</p> </li> </ul> </li> <li> <p>Mail</p> <ul> <li> <p>No progress yet.</p> </li> <li> <p>Jason: Nitpick notifications going to spam</p> </li> <li> <p>Kenny: outlook web UI allows “report as not spam”</p> <ul> <li>More people doing it, the better</li> </ul> </li> </ul> </li> <li> <p>Import</p> <ul> <li> <p>Dom: Insight importer PR open. Lots of testing needed</p> <ul> <li> <p>Import lots of files</p> </li> <li> <p>Includes Riad’s ‘skip thumbnailing’ etc.</p> </li> </ul> </li> <li> <p>Dom: more clarification needed on requirements etc.</p> </li> <li> <p>Riad: most quick-fixes covered. Are bigger changes worth it?</p> </li> </ul> </li> </ul> </li> <li> <p>Glencoe. Chris:</p> <ul> <li> <p>OMERO PR - handling more channels in right panel</p> <ul> <li><a href="https://github.com/openmicroscopy/openmicroscopy/pull/5810"><u>https://github.com/openmicroscopy/openmicroscopy/pull/5810</u></a></li> </ul> </li> <li> <p>Documentation PR on LDAP lowercase usernames</p> <ul> <li><a href="https://github.com/openmicroscopy/ome-documentation/pull/1888"><u>https://github.com/openmicroscopy/ome-documentation/pull/1888</u></a></li> </ul> </li> <li> <p>Melissa: see cards on 5.10 board</p> </li> </ul> </li> <li> <p>Community</p> <ul> <li>Jason: TOPIM-TECH meeting. Good to be at diverse meeting - <blockquote> <p>Medicine, Pathology etc.</p> </blockquote> </li> <li> <p>Petr: feedback on outreach board.</p> </li> <li> <p>Jason: next is Basel, 3-4 september.</p> <ul> <li> <p>Petr: need to include sysadmin installation content</p> </li> <li> <p>Flexible content depending on sign-ups.</p> </li> <li> <p>Oliver wants to promote OMERO to sysadmins.</p> </li> <li> <p>E.g. use docker to show server install walk-through</p> </li> <li> <p>Kenny: software carpentry notes on install are available</p> </li> </ul> </li> </ul> </li> </ul> <ol> <li> <h2 id="aob">AOB</h2> </li> </ol> <p>(5 min. max; tech. Discussion should be highlighted to relevant people and rescheduled)</p> <ul> <li>Kenny: demo account creation script not working. E-mail accounts not <blockquote> <p>e-mailed.</p> </blockquote> </li> <li>Need cli exit status to confirm that e-mail sent and for script to <blockquote> <p>check that.</p> </blockquote> </li> <li>1 month backlog. Delete accounts and re-create with e-mail fixes.</li> </ul> <ol> <li> <h2 id="main-topic">Main Topic</h2> </li> </ol> <p>(20-25 minutes plus 15 minutes questions max)</p> </div> </div> <div class="row"> <div class="column"> <p class="text-right"> — <i></i> </p> </div> </div>   <div class="text-center"> <a id="back-to-top" href="#top-of-page"><i class="fa fa-arrow-up"></i> back to top</a> </div>  <hr class="whitespace"> <div id="footer" class="callout large secondary"> <div class="row"> <div class="small-12 medium-4 columns"> <div class="medium-4"><a href="/index.html"><img class="footer-logo" src="/img/logos/ome-main-nav.svg" alt="OME logo" /></a></div> <p>© 2005-2025 University of Dundee & Open Microscopy Environment. <a href="https://creativecommons.org/licenses/by/4.0/" target="_blank">Creative Commons Attribution 4.0 International License</a></p> <p>OME source code is available under the <a href="https://www.gnu.org/copyleft/gpl.html">GNU General public license</a> or more permissive open source licenses, or through commercial license from <a href="https://www.glencoesoftware.com" target="_blank">Glencoe Software Inc.</a><br/>OME, Bio-Formats, OMERO, IDR and their associated logos are trademarks of <a href="https://www.glencoesoftware.com" target="_blank">Glencoe Software Inc.</a>, which holds these marks to protect them on behalf of the OME community.</p> <p class="tiny-print" style="float:left;">[ <a href="/site-map/">Site Map</a> ]</p> <p class="tiny-print" style="float:right;">Version: 2025.02.05</p> </div> <div class="medium-2 columns"> <h6>Learn About Us</h6> <ul class="menu vertical"> <li><a href="/about/">Who We Are</a></li> <li><a href="/teams/">Our Team</a></li> <li><a href="/explore/">What We Can Do</a></li> <li><a href="/news/">What We’re Up To</a></li> <li><a href="/events/ome-community-meeting-2024/">OME 2024</a></li> <li class="hide-for-large-only"> </li> </ul> </div> <div class="medium-2 columns"> <h6>Try Our Products</h6> <ul class="menu vertical"> <li><a href="/omero/downloads/">OMERO <span class="badge">Download</span></a></li> <li><a href="/bio-formats/downloads">Bio-Formats <span class="badge">Download</span></a></li> <li><a href="/ome-files/downloads">OME Files <span class="badge">Download</span></a></li> <li class="hide-for-large-only"> </li> </ul> </div> <div class="medium-2 columns"> <h6>Knowledge Base</h6> <ul class="menu vertical"> <li><a href="/support/">Support</a></li> <li><a href="/docs/">Documentation</a></li> <li><a href="https://omero-guides.readthedocs.io/">User Guides</a></li> <li><a href="https://www.openmicroscopy.org/forums">Forum</a></li> <li><a href="https://www.openmicroscopy.org/security/advisories/">Security Advisories</a></li> <li class="hide-for-large-only"> </li> </ul> </div> <div class="medium-2 columns end"> <h6>OME Public</h6> <ul class="menu vertical"> <li><a href="https://bsky.app/profile/openmicroscopy.org" target="_blank"><i class="fa fa-brands fa-bluesky"></i> Bluesky</a></li> <li><a href="https://www.linkedin.com/company/ome---open-microscopy-environment" target="_blank"><i class="fa fa-fw fa-brands fa-linkedin-in"></i> LinkedIn</a></li> <li><a href="https://www.facebook.com/openmicroscopy" target="_blank"><i class="fa fa-fw fa-brands fa-facebook-f"></i> Facebook</a></li>  <li><a href="/on-the-web/" target="_blank"><i class="fa fa-globe"></i> On the Web</a></li> <li class="hide-for-large-only"> </li> </ul> </div> </div> </div> <script src="/js/vendor/jquery-3.7.1.min.js"></script> <script src="/js/vendor/what-input.js"></script> <script src="/js/vendor/foundation.js"></script> <script src="/js/app.js"></script> <script> $(document).foundation(); try { // helper function to filter out empty paths (trailing slash) var omitEmpty = function(el) { return el.trim() !== ''}; // extract last path bit from url var paths = document.location.pathname.split('/').filter(omitEmpty); var path = paths[paths.length-1]; // helper function to find and set active option var setActiveNavOption = function(el) { var subPaths = el.href.split('/').filter(omitEmpty); var subPath = subPaths[subPaths.length-1]; if (subPath === path) { $(el).addClass('is-active'); return true } return false; } // check if we have a .header-subnav match? var hasSubMenu = false; $(".header-subnav li a").each(function(i, el) { var isMatch = setActiveNavOption(el); if (isMatch) { hasSubMenu = true; return false; } }); // find corresponding path bit for .menu-subnav option if (hasSubMenu && paths.length > 1) { var parentPath = paths[paths.length-2]; if (parentPath !== 'omero') path = parentPath; } // set .menu-subnav option $(".menu-subnav li a").each(function(i, el) { if (setActiveNavOption(el)) return false; }); } catch(ignored) {} </script> </body> </html>

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2018-07-17 | Open Microscopy Environment (OME)