CINXE.COM

EGA European Genome-Phenome Archive - EGA European Genome-Phenome Archive

<!DOCTYPE html> <html lang="en"> <head> <title>EGA European Genome-Phenome Archive - EGA European Genome-Phenome Archive</title> <link type="text/css" rel="stylesheet" href="https://static.ega-archive.org/css/static.css"/> <meta name="description" content="The European Genome-phenome Archive (EGA) is a service for permanent archiving and sharing of all types of personally identifiable genetic and phenotypic data resulting from biomedical research projects." /> <!-- SEO meta-tags for Social Media !--> <meta property="og:title" content="EGA European Genome-Phenome Archive - EGA European Genome-Phenome Archive" /> <meta property="og:description" content="The European Genome-phenome Archive (EGA) is a service for permanent archiving and sharing of all types of personally identifiable genetic and phenotypic data resulting from biomedical research projects." /> <meta property="og:image" content="https://static.ega-archive.org/img/social_media_logo.png" /> <script src="https://kit.fontawesome.com/9394affc27.js" crossorigin="anonymous"></script> <link rel="stylesheet" media="screen and (max-width: 600px)" href="https://static.ega-archive.org/css/responsive_small.css" /> <link rel="stylesheet" media="screen and (min-width: 600px)" href="https://static.ega-archive.org/css/responsive_medium.css" /> <link rel="stylesheet" media="screen and (min-width: 992px)" href="https://static.ega-archive.org/css/responsive_large.css" /> <link rel="stylesheet" href="https://static.ega-archive.org/css/distribution.css" /> <link rel="icon" href="https://static.ega-archive.org/img/favicon.ico" /> <meta charset="utf-8" /> <meta name="viewport" content="width=device-width, initial-scale=1.0"/> <!--IE Compatibility modes--> <meta http-equiv="X-UA-Compatible" content="IE=edge"/> <meta name="google-site-verification" content="F6ZkxtUDFQNy7OlZ9iORoM7MJYiBvDAe4gMYABu4Ij0" /> </head> <body id="home"> <header> <section class="container"> <div id="logo"> <a href="https://ega-archive.org/"><img src="https://static.ega-archive.org/img/logo.png" title="EGA European Genome-Phenome Archive Logo" /></a> </div> <nav> <a href="/login"><i class="fa fa-sign-out-alt"></i>Login</a><a href="/register"><i class="fas fa-user-plus"></i>Register</a> </nav> <a href="https://ega-archive.org/need-help/"><i class="fas fa-question-circle"></i>Need Help?</a> </section> <nav> <span> <i class="fas fa-bars"></i> </span> <div class="container"> <ul id="main-menu"> <li><span>ABOUT</span> <nav> <div class="container"> <ul> <h2>ABOUT THE EGA</h2> <li><a href="https://ega-archive.org/about/ega/">EGA</a></li> <li><a href="https://ega-archive.org/about/privacy-notice/">Privacy Notice</a></li> <li><a href="https://ega-archive.org/about/security/">Security</a></li> <li><a href="https://ega-archive.org/about/team/">Team</a></li> </ul> <ul> <h2>STATISTICS</h2> <li><a href="https://ega-archive.org/about/statistics/bibliography/">Bibliography</a></li> <li><a href="https://ega-archive.org/about/statistics/growth/">Growth</a></li> <li><a href="https://ega-archive.org/about/statistics/community/">Community</a></li> <li><a href="https://ega-archive.org/about/statistics/archive/">Archive</a></li> <li><a href="https://ega-archive.org/about/statistics/distribution/">Distribution</a></li> <li><a href="https://ega-archive.org/about/statistics/catalog/">Catalog</a></li> </ul> <ul> <h2>PROJECTS AND FUNDERS</h2> <li><a href="https://ega-archive.org/about/projects-and-funders/projects/">Projects</a></li> <li><a href="https://ega-archive.org/about/projects-and-funders/funders/">Funders</a></li> <li><a href="https://ega-archive.org/about/projects-and-funders/ga4gh/">GA4GH</a></li> <li><a href="https://ega-archive.org/about/projects-and-funders/federated-ega/">Federated EGA</a></li> <li><a href="https://ega-archive.org/about/projects-and-funders/beacon/">Beacon</a></li> </ul> </div> </nav> </li> <li><span>DISCOVERY</span> <nav> <div class="container"> <ul> <h2>CATALOGUE</h2> <li><a href="https://ega-archive.org/studies/">Studies</a></li> <li><a href="https://ega-archive.org/datasets/">Datasets</a></li> <li><a href="https://ega-archive.org/dacs/">DACs</a></li> <li><a href="https://ega-archive.org/synthetic-data/">Synthetic Data</a></li> </ul> <ul> <h2>METADATA</h2> <li><a href="https://ega-archive.org/discovery/metadata/search-box/">Search Box</a></li> <li><a href="https://ega-archive.org/discovery/metadata/public-metadata-api/">Public Metadata API</a></li> </ul> </div> </nav> </li> <li><span>SUBMISSION</span> <nav> <div class="container"> <ul> <h2>DATA</h2> <li><a href="https://ega-archive.org/submission/data/file-preparation/crypt4gh/">File preparation</a></li> <li><a href="https://ega-archive.org/submission/data/uploading-files/inbox/">Uploading files</a></li> </ul> <ul> <h2>METADATA</h2> <li><a href="https://ega-archive.org/submission/metadata/ega-schema/">EGA Schema</a></li> <li><span>Sequencing & Phenotype</span> <ul> <li><a href="https://ega-archive.org/submission/metadata/submission/sequencing-phenotype/submitter-portal/">Submitter Portal</a></li> <li><a href="https://ega-archive.org/submission/metadata/submission/sequencing-phenotype/submitter-portal-api/">Submitter Portal API</a></li> </ul> </li> <li><a href="https://ega-archive.org/submission/metadata/submission/array">Array</a></li> <li><a href="https://ega-archive.org/submission/metadata/submission/programmatic-submission-xml/">Programmatic Submission XML</a></li> </ul> </div> </nav> </li> <li><span>ACCESS</span> <nav> <div class="container"> <ul> <h2>DATA ACCESS COMMITTEE</h2> <li><a href="https://ega-archive.org/access/data-access-committee/what-is-dac/">What is a DAC?</a></li> <li><a href="https://ega-archive.org/access/data-access-committee/best-practices/">Best Practices</a></li> <li><a href="https://ega-archive.org/access/data-access-committee/dac-portal/">DAC Portal</a></li> <li><a href="https://ega-archive.org/access/data-access-committee/data-use-ontology/">Data Use Conditions</a></li> </ul> <ul> <h2>REQUEST DATA</h2> <li><a href="https://ega-archive.org/access/request-data/how-to-request-data/">How to request data?</a></li> <li><a href="https://ega-archive.org/access/request-data/quality-control-reports/">Quality Control Reports</a></li> </ul> <ul> <h2>DOWNLOAD</h2> <li><a href="https://ega-archive.org/access/download/metadata/">Metadata</a></li> <li> <span>Files</span> <ul> <li><a href="https://ega-archive.org/access/download/files/pyega3/">PyEGA3</a></li> <li><a href="https://ega-archive.org/access/download/files/live-outbox/">Live Outbox</a></li> </ul> </li> <li> <span>Visualisation</span> <ul> <li><a href="https://ega-archive.org/access/download/visualisation/fuse-client/">FUSE Client</a></li> <li><a href="https://ega-archive.org/access/download/visualisation/ega-quickview/">EGA QuickView</a></li> </ul> </li> </ul> </div> </nav> </li> </ul> <div id="search-bar"> <form action="https://ega-archive.org/search/" method="GET" autocomplete="off"> <i class="fas fa-search"></i> <input data-delay="500" data-url="https://ega-archive.org/search-suggestions?search_terms=" type="text" placeholder="Search..." name="search_terms" value="" /> <a href="https://ega-archive.org/discovery/metadata/search-box/">Tips on how to search</a> <ul></ul> </form> <script src="https://static.ega-archive.org/js/search-bar.js"></script> </div> </div> </nav> </header> <main> <section class="container"> <section id="announcements" class="container" data-url='https://status.ega-archive.org/api/messages'></section> <section id="ega-text"><h2 class="container">The European Genome-phenome Archive (EGA) is a service for permanent archiving and sharing of personally identifiable genetic, phenotypic, and clinical data generated for the purposes of biomedical research projects or in the context of research-focused healthcare systems. </h2></section> <section id="animation" style="--bg-animation: url('https://static.ega-archive.org/img/animation.svg');"> <div> <button class="container" id="back"><i class="fas fa-chevron-circle-left"></i></button> <h1 class="container" id="LP_title">I want to...</h1> <h2 class="container" id="LP_subtitle"></h2> <nav class="container"> <span data-lp-button="1" data-lp-id=""></span> <span data-lp-button="2" data-lp-id=""></span> <span data-lp-button="3" data-lp-id=""></span> <span data-lp-button="4" data-lp-id=""></span> <span data-lp-button="5" data-lp-id=""></span> </nav> <button class="container" id="start-over"><i class="fas fa-undo"></i><span>Start Over</span></button> </div> </section> <script> window.ega_learning_path = { 'title': 'I want to...', 'sub_title': '', 'buttons': { 'download_data': { 'button': '<i class="fas fa-download"></i>DOWNLOAD<br>DATA', 'title': 'I want to download data...', 'sub_title': 'Do you have access to the dataset?', 'buttons': { 'yes': { 'button': 'Yes', 'title': 'I want to download data...', 'sub_title': 'What do you want to download?', 'buttons': { 'metadata': { 'button': 'Metadata', 'title': 'I want to download data...', 'sub_title': 'Here are your links of interest...', 'buttons': { 'click_here' : { 'button': '<a href="submission/metadata/ega-schema/">Metadata Documentation</a>', } } }, 'files': { 'button': 'Files', 'title': 'I want to download data...', 'sub_title': 'What are you interested in?', 'buttons': { 'whole-files': { 'button': 'Whole Files', 'title': 'I want to download data...', 'sub_title': 'Do you want to download...', 'buttons': { 'less-than-10-tb': { 'button': 'Less than 10 TB?', 'title': 'I want to download data...', 'sub_title': 'Here are your links of interest...', 'buttons': { 'pyega3-documentation' : { 'button': '<a href="/access/download/files/pyega3/">PyEGA3 Documentation</a>' }, 'pyega3-client' : { 'button': '<a href="https://github.com/EGA-archive/ega-download-client#ega-download-client-pyega3">PyEGA3 Client</a>' } } }, 'more-than-10-tb': { 'button': 'More than 10 TB?', 'title': 'I want to download data...', 'sub_title': 'Here are your links of interest...', 'buttons': { 'aspera-box-documentation' : { 'button': '<a href="/access/download/files/live-outbox">Live Outbox Documentation</a>' } } } } }, 'specific-genomic-regions': { 'button': 'Specific Genomic Regions', 'title': 'I want to download data...', 'sub_title': 'What do you want to do?', 'buttons': { 'download-genomic-slices-locally': { 'button': 'Download Genomic Slices Locally', 'title': 'I want to download data...', 'sub_title': 'Here are your links of interest...', 'buttons': { 'pyega3-documentation' : { 'button': '<a href="/access/download/files/pyega3/">PyEGA3 Documentation</a>' }, 'pyega3-client' : { 'button': '<a href="https://github.com/EGA-archive/ega-download-client#ega-download-client-pyega3">PyEGA3 Client</a>' } } }, 'visualise-genomic-slices-interactively': { 'button': 'Visualise Genomic Slices Interactively', 'title': 'I want to download data...', 'sub_title': 'What is the file format?', 'buttons': { 'gpg': { 'button': 'GPG', 'title': 'I want to download data...', 'sub_title': 'Here are your links of interest...', 'buttons': { 'ega-fuse-client-documentation' : { 'button': '<a href="/access/download/visualisation/fuse-client/">EGA Fuse Client Documentation</a>' }, 'ega-fuse-client' : { 'button': '<a href="https://github.com/EGA-archive/ega-fuse-client">EGA Fuse Client</a>' } } }, 'c4gh': { 'button': 'C4GH', 'title': 'I want to download data...', 'sub_title': 'Here are your links of interest...', 'buttons': { 'ega-quickview-documentation' : { 'button': '<a href="/access/download/visualisation/ega-quickview/">EGA QuickView Documentation</a>' }, 'ega-quickview' : { 'button': '<a href="https://github.com/EGA-archive/ega-quickview">EGA QuickView</a>' } } }, 'i-dont-know': { 'button': "I don't know", 'title': 'I want to download data...', 'sub_title': 'Here are your links of interest...', 'buttons': { 'ega-quickview-documentation' : { 'button': '<a href="/check-encryption-type/">How to check the file encryption type?</a>' } } } } } } } } } } }, 'no': { 'button': 'No', 'title': 'I want to download data...', 'sub_title': 'Here are your links of interest...', 'buttons': { 'request-data-guide' : { 'button': '<a href="/access/request-data/how-to-request-data/">How to request data?</a>' } } }, 'i-dont-know': { 'button': "I don't know", 'title': 'I want to download data...', 'sub_title': 'Here are your links of interest...', 'buttons': { 'check-your-datasets' : { 'button': '<a href="https://profile.ega-archive.org/datasets/">Check your datasets</a>' } } } } }, 'deposit_data': { 'button': '<i class="fas fa-cloud-upload-alt"></i>DEPOSIT<br>DATA', 'title': 'I want to deposit data...', 'sub_title': 'Have you submitted data to EGA previously?', 'buttons': { 'yes': { 'button': "Yes", 'title': 'I want to deposit data...', 'sub_title': 'Which type of data do you want to deposit?', 'buttons': { 'sequencing' : { 'button': "Sequencing", 'title': 'I want to deposit data...', 'sub_title': 'How do you want to deposit your data?', 'buttons': { 'programmatically': { 'button': "Programmatically", 'title': 'I want to deposit data...', 'sub_title': 'Here are your links of interest...', 'buttons': { 'ega-cryptor' : { 'button': '<a href="/submission/data/file-preparation/egacryptor/">EGACryptor</a>' }, 'ftp' : { 'button': '<a href="/submission/data/uploading-files/ftp/">Uploading Files</a>' }, 'sp-api' : { 'button': '<a href="/submission/metadata/submission/sequencing-phenotype/submitter-portal-api/">Submitter Portal API</a>' } } }, 'user-interface': { 'button': "User Interface", 'title': 'I want to deposit data...', 'sub_title': 'Here are your links of interest...', 'buttons': { 'ega-cryptor' : { 'button': '<a href="/submission/data/file-preparation/egacryptor/">EGACryptor</a>' }, 'ftp' : { 'button': '<a href="/submission/data/uploading-files/ftp/">Uploading Files</a>' }, 'sp-ui-documentation' : { 'button': '<a href="/submission/metadata/submission/sequencing-phenotype/submitter-portal/">Submitter Portal Documentation</a>' }, 'sp-ui' : { 'button': '<a href="https://submission.ega-archive.org">Submitter Portal</a>' } } } } }, 'array' : { 'button': "Array", 'title': 'I want to deposit data...', 'sub_title': 'How do you want to deposit your data?', 'buttons': { 'programmatically': { 'button': "Programmatically", 'title': 'I want to deposit data...', 'sub_title': 'Here are your links of interest...', 'buttons': { 'ega-cryptor' : { 'button': '<a href="/submission/data/file-preparation/egacryptor/">EGACryptor</a>' }, 'ftp' : { 'button': '<a href="/submission/data/uploading-files/ftp/">Uploading Files</a>' }, 'sp-api' : { 'button': '<a href="/submission/metadata/submission/sequencing-phenotype/submitter-portal-api/">Submitter Portal API</a>' } } }, 'user-interface': { 'button': "User Interface", 'title': 'I want to deposit data...', 'sub_title': 'Here are your links of interest...', 'buttons': { 'ega-cryptor' : { 'button': '<a href="/submission/data/file-preparation/egacryptor/">EGACryptor</a>' }, 'ftp' : { 'button': '<a href="/submission/data/uploading-files/ftp/">Uploading Files</a>' }, 'webin-ui' : { 'button': '<a href="/submission/metadata/submission/EGA_webin/">Webin UI</a>' }, 'array-submission' : { 'button': '<a href="/submission/metadata/submission/array/">Array Submission</a>' } } } } }, 'phenotype' : { 'button': "Phenotype", 'title': 'I want to deposit data...', 'sub_title': 'How do you want to deposit your data?', 'buttons': { 'programmatically': { 'button': "Programmatically", 'title': 'I want to deposit data...', 'sub_title': 'Here are your links of interest...', 'buttons': { 'ega-cryptor' : { 'button': '<a href="/submission/data/file-preparation/egacryptor/">EGACryptor</a>' }, 'ftp' : { 'button': '<a href="/submission/data/uploading-files/ftp/">Uploading Files</a>' }, 'programmatic-submission-xml' : { 'button': '<a href="/submission/metadata/submission/programmatic-submission-xml/">Programmatic Submission XML</a>' }, 'array-submission' : { 'button': '<a href="/submission/metadata/submission/array/">Array Submission</a>' } } }, 'user-interface': { 'button': "User Interface", 'title': 'I want to deposit data...', 'sub_title': 'Here are your links of interest...', 'buttons': { 'ega-cryptor' : { 'button': '<a href="/submission/data/file-preparation/egacryptor/">EGACryptor</a>' }, 'ftp' : { 'button': '<a href="/submission/data/uploading-files/ftp/">Uploading Files</a>' }, 'sp-ui-documentation' : { 'button': '<a href="/submission/metadata/submission/sequencing-phenotype/submitter-portal/">Submitter Portal Documentation</a>' }, 'sp-ui' : { 'button': '<a href="https://submission.ega-archive.org">Submitter Portal</a>' } } } } }, 'a-combination-of-the-options-above' : { 'button': "A combination of the options above", 'title': 'I want to deposit data...', 'sub_title': 'How do you want to deposit your data?', 'buttons': { 'programmatically': { 'button': "Programmatically", 'title': 'I want to deposit data...', 'sub_title': 'Here are your links of interest...', 'buttons': { 'ega-cryptor' : { 'button': '<a href="/submission/data/file-preparation/egacryptor/">EGACryptor</a>' }, 'ftp' : { 'button': '<a href="/submission/data/uploading-files/ftp/">Uploading Files</a>' }, 'programmatic-submission-xml' : { 'button': '<a href="/submission/metadata/submission/programmatic-submission-xml/">Programmatic Submission XML</a>' }, 'array-submission' : { 'button': '<a href="/submission/metadata/submission/array/">Array Submission</a>' } } }, 'user-interface': { 'button': "User Interface", 'title': 'I want to deposit data...', 'sub_title': 'Here are your links of interest...', 'buttons': { 'ega-cryptor' : { 'button': '<a href="/submission/data/file-preparation/egacryptor/">EGACryptor</a>' }, 'ftp' : { 'button': '<a href="/submission/data/uploading-files/ftp/">Uploading Files</a>' }, 'webin-ui' : { 'button': '<a href="/submission/metadata/submission/EGA_webin/">Webin UI</a>' }, 'array-submission' : { 'button': '<a href="/submission/metadata/submission/array/">Array Submission</a>' } } } } } } }, 'no': { 'button': 'No', 'title': 'I want to deposit data...', 'sub_title': 'Which type of data do you want to deposit?', 'buttons': { 'sequencing': { 'button': 'Sequencing', 'title': 'I want to deposit data...', 'sub_title': 'How do you want to deposit your data?', 'buttons': { 'programmatically': { 'button': "Programmatically", 'title': 'I want to deposit data...', 'sub_title': 'Here are your links of interest...', 'buttons': { 'new-user' : { 'button': '<a href="/how-to-manage-your-account/">Create an account</a>' }, 'file-preparation' : { 'button': '<a href="/submission/data/file-preparation/crypt4gh/">File Preparation</a>' }, 'inbox' : { 'button': '<a href="/submission/data/uploading-files/inbox/">Uploading Files</a>' }, 'sp-api' : { 'button': '<a href="/submission/metadata/submission/sequencing-phenotype/submitter-portal-api/">Submitter Portal API</a>' } } }, 'user-interface': { 'button': 'User Interface', 'title': 'I want to deposit data...', 'sub_title': 'Here are your links of interest...', 'buttons': { 'new-user' : { 'button': '<a href="/how-to-manage-your-account/">Create an account</a>' }, 'file-preparation' : { 'button': '<a href="/submission/data/file-preparation/crypt4gh/">File Preparation</a>' }, 'inbox' : { 'button': '<a href="/submission/data/uploading-files/inbox/">Uploading Files</a>' }, 'sp-ui-documentation' : { 'button': '<a href="/submission/metadata/submission/sequencing-phenotype/submitter-portal/">Submitter Portal Documentation</a>' }, 'sp-ui' : { 'button': '<a href="https://submission.ega-archive.org">Submitter Portal</a>' } } } } }, 'array': { 'button': 'Array', 'title': 'I want to deposit data...', 'sub_title': 'How do you want to deposit your data?', 'buttons': { 'programmatically': { 'button': "Programmatically", 'title': 'I want to deposit data...', 'sub_title': 'Here are your links of interest...', 'buttons': { 'request-ega-box' : { 'button': '<a href="https://profile.ega-archive.org/af-submission-form/">Request an ega-box</a>' }, 'ega-cryptor' : { 'button': '<a href="/submission/data/file-preparation/egacryptor/">EGACryptor</a>' }, 'ftp' : { 'button': '<a href="/submission/data/uploading-files/ftp/">Uploading Files</a>' }, 'programmatic-submission-xml' : { 'button': '<a href="/submission/metadata/submission/programmatic-submission-xml/">Programmatic Submission XML</a>' }, 'array-submission' : { 'button': '<a href="/submission/metadata/submission/array/">Array Submission</a>' } } }, 'user-interface': { 'button': 'User Interface', 'title': 'I want to deposit data...', 'sub_title': 'Here are your links of interest...', 'buttons': { 'request-ega-box' : { 'button': '<a href="https://profile.ega-archive.org/af-submission-form/">Request an ega-box</a>' }, 'ega-cryptor' : { 'button': '<a href="/submission/data/file-preparation/egacryptor/">EGACryptor</a>' }, 'ftp' : { 'button': '<a href="/submission/data/uploading-files/ftp/">Uploading Files</a>' }, 'webin-ui' : { 'button': '<a href="/submission/metadata/submission/EGA_webin/">Webin UI</a>' }, 'array-submission' : { 'button': '<a href="/submission/metadata/submission/array/">Array Submission</a>' } } } } }, 'phenotype': { 'button': 'Phenotype', 'title': 'I want to deposit data...', 'sub_title': 'How do you want to deposit your data?', 'buttons': { 'programmatically': { 'button': "Programmatically", 'title': 'I want to deposit data...', 'sub_title': 'Here are your links of interest...', 'buttons': { 'new-user' : { 'button': '<a href="/how-to-manage-your-account/">Create an account</a>' }, 'file-preparation' : { 'button': '<a href="/submission/data/file-preparation/crypt4gh/">File Preparation</a>' }, 'inbox' : { 'button': '<a href="/submission/data/uploading-files/inbox/">Uploading Files</a>' }, 'sp-api' : { 'button': '<a href="/submission/metadata/submission/sequencing-phenotype/submitter-portal-api/">Submitter Portal API</a>' } } }, 'user-interface': { 'button': 'User Interface', 'title': 'I want to deposit data...', 'sub_title': 'Here are your links of interest...', 'buttons': { 'new-user' : { 'button': '<a href="/how-to-manage-your-account/">Create an account</a>' }, 'file-preparation' : { 'button': '<a href="/submission/data/file-preparation/crypt4gh/">File Preparation</a>' }, 'inbox' : { 'button': '<a href="/submission/data/uploading-files/inbox/">Uploading Files</a>' }, 'sp-ui-documentation' : { 'button': '<a href="/submission/metadata/submission/sequencing-phenotype/submitter-portal/">Submitter Portal Documentation</a>' }, 'sp-ui' : { 'button': '<a href="https://submission.ega-archive.org">Submitter Portal</a>' } } } } }, 'a-combination-of-the-options-above' : { 'button': "A combination of the options above", 'title': 'I want to deposit data...', 'sub_title': 'How do you want to deposit your data?', 'buttons': { 'programmatically': { 'button': "Programmatically", 'title': 'I want to deposit data...', 'sub_title': 'Here are your links of interest...', 'buttons': { 'request-ega-box' : { 'button': '<a href="https://profile.ega-archive.org/af-submission-form/">Request an ega-box</a>' }, 'ega-cryptor' : { 'button': '<a href="/submission/data/file-preparation/egacryptor/">EGACryptor</a>' }, 'ftp' : { 'button': '<a href="/submission/data/uploading-files/ftp/">Uploading Files</a>' }, 'programmatic-submission-xml' : { 'button': '<a href="/submission/metadata/submission/programmatic-submission-xml/">Programmatic Submission XML</a>' }, 'array-submission' : { 'button': '<a href="/submission/metadata/submission/array/">Array Submission</a>' } } }, 'user-interface': { 'button': "User Interface", 'title': 'I want to deposit data...', 'sub_title': 'Here are your links of interest...', 'buttons': { 'request-ega-box' : { 'button': '<a href="https://profile.ega-archive.org/af-submission-form/">Request an ega-box</a>' }, 'ega-cryptor' : { 'button': '<a href="/submission/data/file-preparation/egacryptor/">EGACryptor</a>' }, 'ftp' : { 'button': '<a href="/submission/data/uploading-files/ftp/">Uploading Files</a>' }, 'webin-ui' : { 'button': '<a href="/submission/metadata/submission/EGA_webin/">Webin UI</a>' }, 'array-submission' : { 'button': '<a href="/submission/metadata/submission/array/">Array Submission</a>' } } } } } } } }, }, 'manage_data': { 'button': '<i class="fas fa-hand-holding"></i><i class="fas fa-file"></i>MANAGE<br>DATA', 'title': 'I want to manage data...', 'sub_title': 'Here are your links of interest...', 'buttons': { 'dac-guide' : { 'button': '<a href="/access/data-access-committee/dac-portal/">DAC Guide</a>' }, 'dac-portal' : { 'button': '<a href="https://dac.ega-archive.org">DAC Portal</a>' } } } } }; </script> <script src="https://static.ega-archive.org/js/learning-path.js"></script> <section id="events" class="container"> </section> <section id="latest-articles" class="container"> </section> <section id="latest-studies" class="container"> </section> <section id="whats-in-the-ega"> <h2>EGA in numbers</h2> <div class="container"> <input id="tab1" type="radio" name="tabs" checked> <input id="tab2" type="radio" name="tabs"> <input id="tab3" type="radio" name="tabs"> <div class="tab-buttons"> <label class="button" for="tab1">Studies / Datasets / DACs</label> <label class="button" for="tab2">Archive Growth</label> <label class="button" for="tab3">Data Distribution</label> </div> <div class="tab-content"> <div id="tab1-content"> <h3>Released EGA Studies, Datasets and DACs</h3> <svg class="stats" id="growth-objects-released"></svg> </div> <div id="tab2-content"> <svg class="stats" id="ega-archive-growth"></svg> </div> <div id="tab3-content"> <div id="ega-data-distribution"> <div class="menu-checkboxes"></div> <svg class="stats"></svg> </div> </div> </div> </div> </section> <script async src="https://static.ega-archive.org/js/announcements.min.js"></script> <!-- <script async src="https://static.ega-archive.org/js/latest-news.min.js"></script> --> <script async src="https://static.ega-archive.org/js/latest-studies.min.js"></script> <script src="https://static.ega-archive.org/js/blog.min.js"></script> <script> latest_articles([ { title: "From zero to federated discovery: beaconize your biomedical data", url: "https://eccb2024.fi/workshops-tutorials", date: "SEP 17", host: "European Conference on Computational Biology", location: "Turki, Finland", }, { title: "Beacon down under: pioneering practical cohort building in genomic research", url: "https://broadinstitute.swoogo.com/ga4gh-12th-plenary/session/2252832/beacon-down-under-pioneering-practical-cohort-building-in-genomic-research", date: "SEP 17", host: "GA4GH 12th Plenary", location: "Melbourne, Australia", }, { title: "Global Beacon showcase: advancing data discoverability across platforms", url: "https://broadinstitute.swoogo.com/ga4gh-12th-plenary/session/2252839/global-beacon-showcase-advancing-data-discoverability-across-platforms", date: "SEP 17", host: "GA4GH 12th Plenary", location: "Melbourne, Australia", }, { title: "GA4GH standards, products, and initiatives", url: "https://broadinstitute.swoogo.com/ga4gh-12th-plenary/session/2252839/global-beacon-showcase-advancing-data-discoverability-across-platforms", date: "SEP 19", host: "GA4GH 12th Plenary", location: "Melbourne, Australia", } ],[ { title:"FEGA FAQs: a summary of the Q+A session from the FEGA workshop at ELIXIR AHM 2024", url:"https://blog.ega-archive.org/fega-faqs-elixir-ahm-2024", imgUrl:"https://blog.ega-archive.org/static/images/articles/fega-faqs-elixir-ahm-2024/main_image.png", imgAlt:"Federated EGA Q&A ELIXIR AHM 2024", }, { title:"How mitochondrial DNA research can benefit from data reuse through EGA?", url:"https://blog.ega-archive.org/mitochondrial-dna-research", imgUrl:"https://blog.ega-archive.org/static/images/articles/mitochondrial-dna-research/main_image.png", imgAlt:"mitochondrial dna research", }, { title:"All you need to know about our new DAC Portal v2", url:"https://blog.ega-archive.org/new-dac-portal-v2", imgUrl:"https://blog.ega-archive.org/static/images/articles/new-dac-portal-v2/main_image.png", imgAlt:"All you need to know about our new DAC Portal v2 main image", } ]) </script> <script src="https://static.ega-archive.org/js/d3.v6.min.js"></script> <script src="https://static.ega-archive.org/js/charts/bar.min.js"></script> <script src="https://static.ega-archive.org/js/charts/line.min.js"></script> <script src="https://static.ega-archive.org/js/charts/curveChart.min.js"></script> <script> lineChart('ega-archive-growth', 'https://stats.ega-archive.org/growth/archive', ['Volume(gb)']) barChart('growth-objects-released', 'https://stats.ega-archive.org/growth/objects/released', ['Number of Objects', ['DAC', 'Dataset', 'Study']]) curveChart('#ega-data-distribution', [ { domId: 'stats-aspera', label: 'Aspera', url: 'https://stats.ega-archive.org/distribution/aspera' }, { domId: 'stats-sftp' , label: 'SFTP', url: 'https://stats.ega-archive.org/distribution/sftp' }, //{ domId: 'stats-htsget', label: 'HTSGET', url: 'https://stats.ega-archive.org/distribution/htsget' }, { domId: 'stats-streamer' , label: 'Download Client', url: 'https://stats.ega-archive.org/distribution/streamer' }, { domId: 'stats-total' , label: 'Total', url: 'https://stats.ega-archive.org/distribution/total' } ] ); </script> <script type="application/ld+json"> { "@context": "http://schema.org", "@type": "DataCatalog", "name": "European Genome-phenome Archive", "alternateName":"EGA", "description": "The EGA provides a service for the permanent archiving and distribution of personally identifiable genetic and phenotypic data resulting from biomedical research projects. Data at EGA was collected from individuals whose consent agreements authorise data release only for specific research use to bona fide researchers. Strict protocols govern how information is managed, stored and distributed by the EGA project.", "url": "https://ega-archive.org", "citation": { "@type": "ScholarlyArticle", "headline": "The European Genome-phenome Archive of human data consented for biomedical research.", "identifier": [ "http://europepmc.org/abstract/MED/26111507" ], "datePublished": "2017-05" }, "keywords": [ "European Genome-phenome Archive", "Genomics", "Genomics Research", "CRG", "Centre for Genomic Regulation", "EGA", "EBI" , "European Bioinformatic Institute", "Research", "Genomics Archives", "European Research", "Human", "Controlled Access","Human Data","Life Science"], "sourceOrganization": [ { "@type":"Organization", "name": "The European Bioinformatics Institute (EMBL-EBI)", "url": "http://www.ebi.ac.uk/" } , { "@type":"Organization", "name": "Centre for Genomic Regulation (CRG) ", "url": "http://www.crg.eu/" } ], "provider": [ { "@type":"Person", "name": "Helpdesk Officer", "email": "helpdesk@ega-archive.org" } ] } </script> </section> </main> <footer> <div id="small-links" class="footer-links"> <div class="container"> <div> <h4>DISCOVERY</h4> <ul> <li><a href="https://ega-archive.org/studies/"><i class="fa fa-folder-open"></i>Studies</a></li> <li><a href="https://ega-archive.org/datasets/"><i class="fa fa-copy"></i>Datasets</a></li> <li><a href="https://ega-archive.org/dacs/"><i class="fa fa-map-marker"></i>DACs</a></li> </ul> </div> <div> <h4>TOOLS</h4> <ul> <li><a href="https://submission.ega-archive.org/"><i class="fas fa-box-open"></i>Submitter Portal</a></li> <li><a href="https://dac.ega-archive.org/"><i class="fas fa-map-marker"></i>DAC Portal</a></li> <li><a href="https://ega-archive.org/tools/"><i class="fas fa-tools"></i>All Tools</a></li> </ul> </div> <div> <h4>CONNECT WITH US</h4> <ul> <li><a href="https://blog.ega-archive.org"><i class="fas fa-book"></i>Blog</a></li> <li><a href="https://twitter.com/EGAArchive" rel="nofollow"><i class="fa fa-twitter"></i>Twitter</a></li> <li><a href="https://www.linkedin.com/company/european-genome-phenome-archive-ega/" rel="nofollow"><i class="fab fa-linkedin-in"></i>LinkedIn</a></li> <li><a href="https://www.youtube.com/channel/UC4Pzhn0c5YBVlFo2qGko_4Q" rel="nofollow"><i class="fa fa-youtube"></i>Youtube</a></li> </ul> </div> </div> </div> <div id="banner"> <div> <a href="https://www.elixir-europe.org/platforms/data/core-data-resources" rel="nofollow"> <img title="Elixir Logo" src="https://static.ega-archive.org/img/Logo_CDR-mini.png"> </a> <section> <h4>The European Genome-phenome Archive (EGA) is part of the ELIXIR infrastructure.</h4> <span>EGA is an Elixir Core Data Resource. <a href="https://www.elixir-europe.org/platforms/data/core-data-resources" rel="nofollow" class="button small orange">Learn more...</a> </span> </section> </div> </div> <div id="footnote" class="container"> <ul> <li><a href="https://ega-archive.org/about/ega/">ABOUT THE EGA</a></li> <li><a href="https://www.crg.eu/en/content/about-us/general-information" rel="nofollow">ABOUT THE CRG</a></li> <li><a href="https://www.ebi.ac.uk/about" rel="nofollow">ABOUT EMBL-EBI</a></li> <li><a href="https://ega-archive.org/need-help/">CONTACT US</a></li> <li><a href="https://ega-archive.org/legal-notice/">LEGAL NOTICE</a></li> <li><a href="https://ega-archive.org/about/privacy-notice/">PRIVACY NOTICE</a></li> <li><a href="https://ega-archive.org/about/projects-and-funders/funders/">SUPPORT</a></li> </ul> </div> <div id="partners" class="container"> <a href="http://www.crg.eu/" rel="nofollow"> <img title="CRG Logo" src="https://static.ega-archive.org/img/CRG_blue.jpg" /> </a> <a href="https://www.ebi.ac.uk" rel="nofollow"> <img title="EBI Logo" src="https://static.ega-archive.org/img/ebi.png"> </a> </div> <div id="cookies" class="active"> <div> <p>This website requires cookies, and the limited processing of your personal data in order to function.</p> <p>By using the site you are agreeing to this as outlined in our <a href="https://ega-archive.org/about/privacy-notice/">Privacy Notice</a> and <a href="https://ega-archive.org/legal-notice/">Terms of Use</a></p> </div> <button>Accept</button> </div> <script src="https://static.ega-archive.org/js/cookies.js"></script> <small>&copy; Copyright 2023. EGA CONSORTIUM</small> </footer> <script src="https://static.ega-archive.org/js/search-on-page.js"></script> <!-- Matomo --> <script> var _paq = window._paq = window._paq || []; /* tracker methods like "setCustomDimension" should be called before "trackPageView" */ _paq.push(["setDocumentTitle", document.domain + "/" + document.title]); _paq.push(["setCookieDomain", "*.ega-archive.org"]); _paq.push(["setDomains", ["*.ega-archive.org"]]); _paq.push(["setDoNotTrack", true]); _paq.push(["trackPageView"]); _paq.push(["enableLinkTracking"]); _paq.push(["setTrackerUrl", "//analytics.ega-archive.org/matomo.php"]); _paq.push(["setSiteId", "1"]); </script> <!-- End Matomo Code --> <script async src="//analytics.ega-archive.org/matomo.js"></script> <noscript><img src="//analytics.ega-archive.org/matomo.php?idsite=1&amp;rec=1" style="border:0;" alt="" /></noscript> </body> </html>

Pages: 1 2 3 4 5 6 7 8 9 10