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</p> </div>  <div class="header-size"> <div class="header-logo"> <a href="/"> <img src="/images/logo/svg/Logo.svg" class="masthead-logo" alt="Bioconductor home" /> </a> </div> <nav class="header-nav"> <div class="nav-links"> <a class="format-bold mobile-link" href="/about/">About</a> <a class="format-bold mobile-link" href="/help/">Learn</a> <a class="format-bold mobile-link" href="/packages/release/BiocViews.html#___Software">Packages</a> <a class="format-bold mobile-link" href="/developers/">Developers</a> </div> <div class="search-container"> <form class="site-search" id="search-form" method="GET" action="/help/search/index.html" > <label for="search-bar" class="sr-only">Search</label> <img src="/images/icons/search-icon.svg" class="search-icon" alt="Search icon" aria-hidden="true" /> <input class="search-bar" name="search-bar" placeholder="Search" id="search-bar" /> </form> </div> <a class="header-button format-bold mobile-link" href="/install/"> <span class="get-started format-bold"> Get Started <svg xmlns="http://www.w3.org/2000/svg" width="14" height="15" viewBox="0 0 14 15" fill="none" > <path d="M5.25 3.66665L9.33333 7.74998L5.25 11.8333" stroke="#3792AD" stroke-width="2.2" stroke-linecap="round" stroke-linejoin="round" /> </svg> </span> </a> </nav> <div class="nav-mobile"> <h6>Menu</h6> <div class="hamburger"> <span class="bar"></span> <span class="bar"></span> <span class="bar"></span> </div> </div> </div> </header> <main> <div class="container"> <section class="content"> <ul class="breadcrumbs"> <li><a href="/">Home</a></li> <li><a href="/packages/3.21/BiocViews.html">Bioconductor 3.21</a></li> <li><a href="/packages/3.21/bioc">Software Packages</a></li> <li>Biostrings (development version)</li> </ul> <h1>Biostrings</h1> <div> <p>This is the <b>development</b> version of Biostrings; for the stable release version, see <a href="/packages/release/bioc/html/Biostrings.html">Biostrings</a>.</p> <h2>Efficient manipulation of biological strings</h2> <div class="sidebar-box" id="badges-box"> <section class="badges"> <a href="#archives"> <img src="/shields/availability/devel/Biostrings.svg" alt="Platform availability badge" title="Whether the package is available on all platforms; click for details." /> </a> <a href="http://bioconductor.org/packages/stats/bioc/Biostrings/"> <img src="/shields/downloads/devel/Biostrings.svg" alt="Ranking badge" title="Ranking by number of downloads. A lower number means the package is downloaded more frequently. Determined within a package type (software, experiment, annotation, workflow) and uses the number of distinct IPs for the last 12 months." /> </a> <a href="https://support.bioconductor.org/tag/biostrings"> <img src="/shields/posts/Biostrings.svg" alt="Support activity badge" title="Support site activity, last 6 months: answered posts / total posts." /> </a> <a href="#since"> <img src="/shields/years-in-bioc/Biostrings.svg" alt="Years in BioConductor badge" title="How long since the package was first in a released Bioconductor version (or is it in devel only)." /> </a> <a href="https://bioconductor.org/checkResults/devel/bioc-LATEST/Biostrings/"> <img src="/shields/build/devel/bioc/Biostrings.svg" alt="Build results badge" title="build results; click for full report" /> </a> <a href="https://bioconductor.org/checkResults/devel/bioc-LATEST/Biostrings/"> <img src="/shields/lastcommit/devel/bioc/Biostrings.svg" alt="Last commit badge" title="time since last commit. possible values: today, < 1 week, < 1 month, < 3 months, since release, before release" /> </a> <a href="#since"> <img src="/shields/dependencies/devel/Biostrings.svg" alt="Dependency count badge" title="Number of recursive dependencies needed to install package." /> </a> </section> <p> DOI: <a title="DOI for use in publications, etc., will always redirect to current release version (or devel if package is not in release yet)." href="https://doi.org/doi:10.18129/B9.bioc.Biostrings" > 10.18129/B9.bioc.Biostrings </a> </p> </div> <p><br></p> <div class="package-info"> <p> <strong>Bioconductor version:</strong> Development (3.21) </p> <p> Memory efficient string containers, string matching algorithms, and other utilities, for fast manipulation of large biological sequences or sets of sequences. </p> <p> <strong>Author:</strong> Herv茅 Pag猫s [aut, cre], Patrick Aboyoun [aut], Robert Gentleman [aut], Saikat DebRoy [aut], Vince Carey [ctb], Nicolas Delhomme [ctb], Felix Ernst [ctb], Wolfgang Huber [ctb] ('matchprobes' vignette), Beryl Kanali [ctb] (Converted 'MultipleAlignments' vignette from Sweave to RMarkdown), Haleema Khan [ctb] (Converted 'matchprobes' vignette from Sweave to RMarkdown), Aidan Lakshman [ctb], Kieran O'Neill [ctb], Valerie Obenchain [ctb], Marcel Ramos [ctb], Albert Vill [ctb], Jen Wokaty [ctb] (Converted 'matchprobes' vignette from Sweave to RMarkdown), Erik Wright [ctb] <p /> <p> <strong>Maintainer:</strong> Herv茅 Pag猫s <hpages.on.github at gmail.com> </p> <div id="bioc-citation-outer"> <strong>Citation (from within R, enter <code>citation("Biostrings")</code>):</strong> <div id="bioc-citation" class="bioc-citation"></div> </div> </div> <h3>Installation</h3> <p> To install this package, start R (version "4.5") and enter: </p> <pre><code> if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") # The following initializes usage of Bioc devel BiocManager::install(version='devel') BiocManager::install("Biostrings") </code></pre> <p> For older versions of R, please refer to the appropriate <a href="/about/release-announcements/">Bioconductor release</a>. </p> <h3>Documentation</h3> <p>To view documentation for the version of this package installed in your system, start R and enter:</p> <pre><code>browseVignettes("Biostrings")</code></pre> <table> <tr> <td>A short presentation of the basic classes defined in Biostrings 2</td> <td> <a onClick="javascript: pageTracker._trackPageview('../vignettes/Biostrings/inst/doc/Biostrings2Classes.pdf'); " href="../vignettes/Biostrings/inst/doc/Biostrings2Classes.pdf">PDF</a> </td> <td> <a onClick="javascript: pageTracker._trackPageview('../vignettes/Biostrings/inst/doc/Biostrings2Classes.R'); " href="../vignettes/Biostrings/inst/doc/Biostrings2Classes.R">R Script</a> </td> </tr> <tr> <td>Biostrings Quick Overview</td> <td> <a onClick="javascript: pageTracker._trackPageview('../vignettes/Biostrings/inst/doc/BiostringsQuickOverview.pdf'); " href="../vignettes/Biostrings/inst/doc/BiostringsQuickOverview.pdf">PDF</a> </td> </tr> <tr> <td>Handling probe sequence information</td> <td> <a href="../vignettes/Biostrings/inst/doc/matchprobes.html">HTML</a> </td> <td> <a onClick="javascript: pageTracker._trackPageview('../vignettes/Biostrings/inst/doc/matchprobes.R'); " href="../vignettes/Biostrings/inst/doc/matchprobes.R">R Script</a> </td> </tr> <tr> <td>Multiple Alignments</td> <td> <a href="../vignettes/Biostrings/inst/doc/MultipleAlignments.html">HTML</a> </td> <td> <a onClick="javascript: pageTracker._trackPageview('../vignettes/Biostrings/inst/doc/MultipleAlignments.R'); " href="../vignettes/Biostrings/inst/doc/MultipleAlignments.R">R Script</a> </td> </tr> <tr> <td>Pairwise Sequence Alignments</td> <td> <a onClick="javascript: pageTracker._trackPageview('../vignettes/Biostrings/inst/doc/PairwiseAlignments.pdf'); " href="../vignettes/Biostrings/inst/doc/PairwiseAlignments.pdf">PDF</a> </td> </tr> <tr> <td>Reference Manual</td> <td> <a onClick="javascript: pageTracker._trackPageview('../manuals/Biostrings/man/Biostrings.pdf'); " href="../manuals/Biostrings/man/Biostrings.pdf">PDF</a> </td> </tr> <tr> <td>NEWS</td> <td> <a href="../news/Biostrings/NEWS">Text</a> </td> </tr> </table> <p> <div class="info-section-button-padding"> <a class="brand-border-button" href="https://support.bioconductor.org/tag/biostrings"> <span class="span-brand format-bold"> Need some help? Ask on the Bioconductor Support site! <svg xmlns="http://www.w3.org/2000/svg" width="14" height="15" viewBox="0 0 14 15" fill="none" > <path d="M5.25 3.66665L9.33333 7.74998L5.25 11.8333" stroke="#3792AD" stroke-width="2.2" stroke-linecap="round" stroke-linejoin="round" /> </svg> </span> </a> </div> </p> <h3 id="details">Details</h3> <table class="full-width"> <tr> <td>biocViews</td> <td><a href="../../BiocViews.html#___Alignment">Alignment</a>, <a href="../../BiocViews.html#___DataImport">DataImport</a>, <a href="../../BiocViews.html#___DataRepresentation">DataRepresentation</a>, <a href="../../BiocViews.html#___Genetics">Genetics</a>, <a href="../../BiocViews.html#___Infrastructure">Infrastructure</a>, <a href="../../BiocViews.html#___SequenceMatching">SequenceMatching</a>, <a href="../../BiocViews.html#___Sequencing">Sequencing</a>, <a href="../../BiocViews.html#___Software">Software</a></td> </tr> <tr> <td>Version</td> <td>2.75.4</td> </tr> <tr id="since"> <td>In Bioconductor since</td> <td>BioC 1.6 (R-2.1) or earlier (> 20 years)</td> </tr> <tr> <td>License</td> <td>Artistic-2.0</td> </tr> <tr> <td>Depends</td> <td>R (>= 4.1.0), <a href="../../bioc/html/BiocGenerics.html">BiocGenerics</a>(>= 0.37.0), <a href="../../bioc/html/S4Vectors.html">S4Vectors</a>(>= 0.27.12), <a href="../../bioc/html/IRanges.html">IRanges</a>(>= 2.31.2), <a href="../../bioc/html/XVector.html">XVector</a>(>= 0.37.1), <a href="../../bioc/html/GenomeInfoDb.html">GenomeInfoDb</a></td> </tr> <tr> <td>Imports</td> <td>methods, utils, grDevices, stats, <a class="cran_package" href="http://cran.rstudio.com/web/packages/crayon/index.html">crayon</a></td> </tr> <tr> <td>System Requirements</td> <td></td> </tr> <tr> <td>URL</td> <td><a href="https://bioconductor.org/packages/Biostrings">https://bioconductor.org/packages/Biostrings</a> </td> </tr> <tr> <td>Bug Reports</td> <td><a href="https://github.com/Bioconductor/Biostrings/issues">https://github.com/Bioconductor/Biostrings/issues</a> </td> </tr> </table> <details> <summary class="package-details">See More</summary> <table class="full-width"> <tr> <td>Suggests</td> <td>graphics, <a href="../../bioc/html/pwalign.html">pwalign</a>, <a href="../../bioc/html/BSgenome.html">BSgenome</a>(>= 1.13.14), <a href="../../data/annotation/html/BSgenome.Celegans.UCSC.ce2.html">BSgenome.Celegans.UCSC.ce2</a>(>= 1.3.11), <a href="../../data/annotation/html/BSgenome.Dmelanogaster.UCSC.dm3.html">BSgenome.Dmelanogaster.UCSC.dm3</a>(>= 1.3.11), <a href="../../data/annotation/html/BSgenome.Hsapiens.UCSC.hg18.html">BSgenome.Hsapiens.UCSC.hg18</a>, <a href="../../data/annotation/html/drosophila2probe.html">drosophila2probe</a>, <a href="../../data/annotation/html/hgu95av2probe.html">hgu95av2probe</a>, <a href="../../data/annotation/html/hgu133aprobe.html">hgu133aprobe</a>, <a href="../../bioc/html/GenomicFeatures.html">GenomicFeatures</a>(>= 1.3.14), <a href="../../data/annotation/html/hgu95av2cdf.html">hgu95av2cdf</a>, <a 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href="../../bioc/html/systemPipeR.html">systemPipeR</a>, <a href="../../bioc/html/topdownr.html">topdownr</a>, <a href="../../bioc/html/transmogR.html">transmogR</a>, <a href="../../bioc/html/TreeSummarizedExperiment.html">TreeSummarizedExperiment</a>, <a href="../../bioc/html/triplex.html">triplex</a>, <a href="../../bioc/html/VarCon.html">VarCon</a>, <a href="../../data/annotation/html/FDb.FANTOM4.promoters.hg19.html">FDb.FANTOM4.promoters.hg19</a>, <a href="../../data/annotation/html/pd.ag.html">pd.ag</a>, <a href="../../data/annotation/html/pd.aragene.1.0.st.html">pd.aragene.1.0.st</a>, <a href="../../data/annotation/html/pd.aragene.1.1.st.html">pd.aragene.1.1.st</a>, <a href="../../data/annotation/html/pd.ath1.121501.html">pd.ath1.121501</a>, <a href="../../data/annotation/html/pd.barley1.html">pd.barley1</a>, <a href="../../data/annotation/html/pd.bovgene.1.0.st.html">pd.bovgene.1.0.st</a>, <a href="../../data/annotation/html/pd.bovgene.1.1.st.html">pd.bovgene.1.1.st</a>, <a href="../../data/annotation/html/pd.bovine.html">pd.bovine</a>, <a href="../../data/annotation/html/pd.bsubtilis.html">pd.bsubtilis</a>, <a href="../../data/annotation/html/pd.cangene.1.0.st.html">pd.cangene.1.0.st</a>, <a href="../../data/annotation/html/pd.cangene.1.1.st.html">pd.cangene.1.1.st</a>, <a href="../../data/annotation/html/pd.canine.html">pd.canine</a>, <a href="../../data/annotation/html/pd.canine.2.html">pd.canine.2</a>, <a href="../../data/annotation/html/pd.celegans.html">pd.celegans</a>, <a href="../../data/annotation/html/pd.chicken.html">pd.chicken</a>, <a href="../../data/annotation/html/pd.chigene.1.0.st.html">pd.chigene.1.0.st</a>, <a href="../../data/annotation/html/pd.chigene.1.1.st.html">pd.chigene.1.1.st</a>, <a href="../../data/annotation/html/pd.chogene.2.0.st.html">pd.chogene.2.0.st</a>, <a href="../../data/annotation/html/pd.chogene.2.1.st.html">pd.chogene.2.1.st</a>, <a href="../../data/annotation/html/pd.citrus.html">pd.citrus</a>, <a href="../../data/annotation/html/pd.clariom.d.human.html">pd.clariom.d.human</a>, <a href="../../data/annotation/html/pd.clariom.s.human.html">pd.clariom.s.human</a>, <a href="../../data/annotation/html/pd.clariom.s.human.ht.html">pd.clariom.s.human.ht</a>, <a href="../../data/annotation/html/pd.clariom.s.mouse.html">pd.clariom.s.mouse</a>, <a href="../../data/annotation/html/pd.clariom.s.mouse.ht.html">pd.clariom.s.mouse.ht</a>, <a href="../../data/annotation/html/pd.clariom.s.rat.html">pd.clariom.s.rat</a>, <a href="../../data/annotation/html/pd.clariom.s.rat.ht.html">pd.clariom.s.rat.ht</a>, <a href="../../data/annotation/html/pd.cotton.html">pd.cotton</a>, <a href="../../data/annotation/html/pd.cyngene.1.0.st.html">pd.cyngene.1.0.st</a>, <a href="../../data/annotation/html/pd.cyngene.1.1.st.html">pd.cyngene.1.1.st</a>, <a href="../../data/annotation/html/pd.cyrgene.1.0.st.html">pd.cyrgene.1.0.st</a>, <a href="../../data/annotation/html/pd.cyrgene.1.1.st.html">pd.cyrgene.1.1.st</a>, <a href="../../data/annotation/html/pd.cytogenetics.array.html">pd.cytogenetics.array</a>, <a href="../../data/annotation/html/pd.drogene.1.0.st.html">pd.drogene.1.0.st</a>, <a href="../../data/annotation/html/pd.drogene.1.1.st.html">pd.drogene.1.1.st</a>, <a href="../../data/annotation/html/pd.drosgenome1.html">pd.drosgenome1</a>, <a href="../../data/annotation/html/pd.drosophila.2.html">pd.drosophila.2</a>, <a href="../../data/annotation/html/pd.e.coli.2.html">pd.e.coli.2</a>, <a href="../../data/annotation/html/pd.ecoli.html">pd.ecoli</a>, <a href="../../data/annotation/html/pd.ecoli.asv2.html">pd.ecoli.asv2</a>, <a href="../../data/annotation/html/pd.elegene.1.0.st.html">pd.elegene.1.0.st</a>, <a href="../../data/annotation/html/pd.elegene.1.1.st.html">pd.elegene.1.1.st</a>, <a href="../../data/annotation/html/pd.equgene.1.0.st.html">pd.equgene.1.0.st</a>, <a href="../../data/annotation/html/pd.equgene.1.1.st.html">pd.equgene.1.1.st</a>, <a href="../../data/annotation/html/pd.felgene.1.0.st.html">pd.felgene.1.0.st</a>, <a href="../../data/annotation/html/pd.felgene.1.1.st.html">pd.felgene.1.1.st</a>, <a href="../../data/annotation/html/pd.fingene.1.0.st.html">pd.fingene.1.0.st</a>, <a href="../../data/annotation/html/pd.fingene.1.1.st.html">pd.fingene.1.1.st</a>, <a href="../../data/annotation/html/pd.genomewidesnp.5.html">pd.genomewidesnp.5</a>, <a href="../../data/annotation/html/pd.genomewidesnp.6.html">pd.genomewidesnp.6</a>, <a href="../../data/annotation/html/pd.guigene.1.0.st.html">pd.guigene.1.0.st</a>, <a href="../../data/annotation/html/pd.guigene.1.1.st.html">pd.guigene.1.1.st</a>, <a href="../../data/annotation/html/pd.hc.g110.html">pd.hc.g110</a>, <a href="../../data/annotation/html/pd.hg.focus.html">pd.hg.focus</a>, <a href="../../data/annotation/html/pd.hg.u133.plus.2.html">pd.hg.u133.plus.2</a>, <a href="../../data/annotation/html/pd.hg.u133a.html">pd.hg.u133a</a>, <a href="../../data/annotation/html/pd.hg.u133a.2.html">pd.hg.u133a.2</a>, <a href="../../data/annotation/html/pd.hg.u133a.tag.html">pd.hg.u133a.tag</a>, <a href="../../data/annotation/html/pd.hg.u133b.html">pd.hg.u133b</a>, <a href="../../data/annotation/html/pd.hg.u219.html">pd.hg.u219</a>, <a href="../../data/annotation/html/pd.hg.u95a.html">pd.hg.u95a</a>, <a href="../../data/annotation/html/pd.hg.u95av2.html">pd.hg.u95av2</a>, <a href="../../data/annotation/html/pd.hg.u95b.html">pd.hg.u95b</a>, <a href="../../data/annotation/html/pd.hg.u95c.html">pd.hg.u95c</a>, <a href="../../data/annotation/html/pd.hg.u95d.html">pd.hg.u95d</a>, <a href="../../data/annotation/html/pd.hg.u95e.html">pd.hg.u95e</a>, <a href="../../data/annotation/html/pd.hg18.60mer.expr.html">pd.hg18.60mer.expr</a>, <a href="../../data/annotation/html/pd.ht.hg.u133.plus.pm.html">pd.ht.hg.u133.plus.pm</a>, <a href="../../data/annotation/html/pd.ht.hg.u133a.html">pd.ht.hg.u133a</a>, <a href="../../data/annotation/html/pd.ht.mg.430a.html">pd.ht.mg.430a</a>, <a href="../../data/annotation/html/pd.hta.2.0.html">pd.hta.2.0</a>, <a href="../../data/annotation/html/pd.hu6800.html">pd.hu6800</a>, <a href="../../data/annotation/html/pd.huex.1.0.st.v2.html">pd.huex.1.0.st.v2</a>, <a href="../../data/annotation/html/pd.hugene.1.0.st.v1.html">pd.hugene.1.0.st.v1</a>, <a href="../../data/annotation/html/pd.hugene.1.1.st.v1.html">pd.hugene.1.1.st.v1</a>, <a href="../../data/annotation/html/pd.hugene.2.0.st.html">pd.hugene.2.0.st</a>, <a href="../../data/annotation/html/pd.hugene.2.1.st.html">pd.hugene.2.1.st</a>, <a href="../../data/annotation/html/pd.maize.html">pd.maize</a>, <a href="../../data/annotation/html/pd.mapping250k.nsp.html">pd.mapping250k.nsp</a>, <a href="../../data/annotation/html/pd.mapping250k.sty.html">pd.mapping250k.sty</a>, <a href="../../data/annotation/html/pd.mapping50k.hind240.html">pd.mapping50k.hind240</a>, <a href="../../data/annotation/html/pd.mapping50k.xba240.html">pd.mapping50k.xba240</a>, <a href="../../data/annotation/html/pd.margene.1.0.st.html">pd.margene.1.0.st</a>, <a href="../../data/annotation/html/pd.margene.1.1.st.html">pd.margene.1.1.st</a>, <a href="../../data/annotation/html/pd.medgene.1.0.st.html">pd.medgene.1.0.st</a>, <a href="../../data/annotation/html/pd.medgene.1.1.st.html">pd.medgene.1.1.st</a>, <a href="../../data/annotation/html/pd.medicago.html">pd.medicago</a>, <a href="../../data/annotation/html/pd.mg.u74a.html">pd.mg.u74a</a>, <a href="../../data/annotation/html/pd.mg.u74av2.html">pd.mg.u74av2</a>, <a href="../../data/annotation/html/pd.mg.u74b.html">pd.mg.u74b</a>, <a href="../../data/annotation/html/pd.mg.u74bv2.html">pd.mg.u74bv2</a>, <a href="../../data/annotation/html/pd.mg.u74c.html">pd.mg.u74c</a>, <a href="../../data/annotation/html/pd.mg.u74cv2.html">pd.mg.u74cv2</a>, <a href="../../data/annotation/html/pd.mirna.1.0.html">pd.mirna.1.0</a>, <a href="../../data/annotation/html/pd.mirna.2.0.html">pd.mirna.2.0</a>, <a href="../../data/annotation/html/pd.mirna.3.0.html">pd.mirna.3.0</a>, <a href="../../data/annotation/html/pd.mirna.4.0.html">pd.mirna.4.0</a>, <a href="../../data/annotation/html/pd.moe430a.html">pd.moe430a</a>, <a href="../../data/annotation/html/pd.moe430b.html">pd.moe430b</a>, <a href="../../data/annotation/html/pd.moex.1.0.st.v1.html">pd.moex.1.0.st.v1</a>, <a href="../../data/annotation/html/pd.mogene.1.0.st.v1.html">pd.mogene.1.0.st.v1</a>, <a href="../../data/annotation/html/pd.mogene.1.1.st.v1.html">pd.mogene.1.1.st.v1</a>, <a href="../../data/annotation/html/pd.mogene.2.0.st.html">pd.mogene.2.0.st</a>, <a href="../../data/annotation/html/pd.mogene.2.1.st.html">pd.mogene.2.1.st</a>, <a href="../../data/annotation/html/pd.mouse430.2.html">pd.mouse430.2</a>, <a href="../../data/annotation/html/pd.mouse430a.2.html">pd.mouse430a.2</a>, <a href="../../data/annotation/html/pd.mta.1.0.html">pd.mta.1.0</a>, <a href="../../data/annotation/html/pd.mu11ksuba.html">pd.mu11ksuba</a>, <a href="../../data/annotation/html/pd.mu11ksubb.html">pd.mu11ksubb</a>, <a href="../../data/annotation/html/pd.nugo.hs1a520180.html">pd.nugo.hs1a520180</a>, <a href="../../data/annotation/html/pd.nugo.mm1a520177.html">pd.nugo.mm1a520177</a>, <a href="../../data/annotation/html/pd.ovigene.1.0.st.html">pd.ovigene.1.0.st</a>, <a href="../../data/annotation/html/pd.ovigene.1.1.st.html">pd.ovigene.1.1.st</a>, <a href="../../data/annotation/html/pd.pae.g1a.html">pd.pae.g1a</a>, <a href="../../data/annotation/html/pd.plasmodium.anopheles.html">pd.plasmodium.anopheles</a>, <a href="../../data/annotation/html/pd.poplar.html">pd.poplar</a>, <a href="../../data/annotation/html/pd.porcine.html">pd.porcine</a>, <a href="../../data/annotation/html/pd.porgene.1.0.st.html">pd.porgene.1.0.st</a>, <a href="../../data/annotation/html/pd.porgene.1.1.st.html">pd.porgene.1.1.st</a>, <a href="../../data/annotation/html/pd.rabgene.1.0.st.html">pd.rabgene.1.0.st</a>, <a href="../../data/annotation/html/pd.rabgene.1.1.st.html">pd.rabgene.1.1.st</a>, <a href="../../data/annotation/html/pd.rae230a.html">pd.rae230a</a>, <a href="../../data/annotation/html/pd.rae230b.html">pd.rae230b</a>, <a href="../../data/annotation/html/pd.raex.1.0.st.v1.html">pd.raex.1.0.st.v1</a>, <a href="../../data/annotation/html/pd.ragene.1.0.st.v1.html">pd.ragene.1.0.st.v1</a>, <a href="../../data/annotation/html/pd.ragene.1.1.st.v1.html">pd.ragene.1.1.st.v1</a>, <a href="../../data/annotation/html/pd.ragene.2.0.st.html">pd.ragene.2.0.st</a>, <a href="../../data/annotation/html/pd.ragene.2.1.st.html">pd.ragene.2.1.st</a>, <a href="../../data/annotation/html/pd.rat230.2.html">pd.rat230.2</a>, <a href="../../data/annotation/html/pd.rcngene.1.0.st.html">pd.rcngene.1.0.st</a>, <a href="../../data/annotation/html/pd.rcngene.1.1.st.html">pd.rcngene.1.1.st</a>, <a href="../../data/annotation/html/pd.rg.u34a.html">pd.rg.u34a</a>, <a href="../../data/annotation/html/pd.rg.u34b.html">pd.rg.u34b</a>, <a href="../../data/annotation/html/pd.rg.u34c.html">pd.rg.u34c</a>, <a href="../../data/annotation/html/pd.rhegene.1.0.st.html">pd.rhegene.1.0.st</a>, <a href="../../data/annotation/html/pd.rhegene.1.1.st.html">pd.rhegene.1.1.st</a>, <a href="../../data/annotation/html/pd.rhesus.html">pd.rhesus</a>, <a href="../../data/annotation/html/pd.rice.html">pd.rice</a>, <a href="../../data/annotation/html/pd.rjpgene.1.0.st.html">pd.rjpgene.1.0.st</a>, <a href="../../data/annotation/html/pd.rjpgene.1.1.st.html">pd.rjpgene.1.1.st</a>, <a href="../../data/annotation/html/pd.rn.u34.html">pd.rn.u34</a>, <a href="../../data/annotation/html/pd.rta.1.0.html">pd.rta.1.0</a>, <a href="../../data/annotation/html/pd.rusgene.1.0.st.html">pd.rusgene.1.0.st</a>, <a href="../../data/annotation/html/pd.rusgene.1.1.st.html">pd.rusgene.1.1.st</a>, <a href="../../data/annotation/html/pd.s.aureus.html">pd.s.aureus</a>, <a href="../../data/annotation/html/pd.soybean.html">pd.soybean</a>, <a href="../../data/annotation/html/pd.soygene.1.0.st.html">pd.soygene.1.0.st</a>, <a href="../../data/annotation/html/pd.soygene.1.1.st.html">pd.soygene.1.1.st</a>, <a href="../../data/annotation/html/pd.sugar.cane.html">pd.sugar.cane</a>, <a href="../../data/annotation/html/pd.tomato.html">pd.tomato</a>, <a href="../../data/annotation/html/pd.u133.x3p.html">pd.u133.x3p</a>, <a href="../../data/annotation/html/pd.vitis.vinifera.html">pd.vitis.vinifera</a>, <a href="../../data/annotation/html/pd.wheat.html">pd.wheat</a>, <a href="../../data/annotation/html/pd.x.laevis.2.html">pd.x.laevis.2</a>, <a href="../../data/annotation/html/pd.x.tropicalis.html">pd.x.tropicalis</a>, <a href="../../data/annotation/html/pd.xenopus.laevis.html">pd.xenopus.laevis</a>, <a href="../../data/annotation/html/pd.yeast.2.html">pd.yeast.2</a>, <a href="../../data/annotation/html/pd.yg.s98.html">pd.yg.s98</a>, <a href="../../data/annotation/html/pd.zebgene.1.0.st.html">pd.zebgene.1.0.st</a>, <a href="../../data/annotation/html/pd.zebgene.1.1.st.html">pd.zebgene.1.1.st</a>, <a href="../../data/annotation/html/pd.zebrafish.html">pd.zebrafish</a>, <a href="../../data/experiment/html/harbChIP.html">harbChIP</a>, <a href="../../data/experiment/html/JASPAR2014.html">JASPAR2014</a>, <a href="../../data/experiment/html/NestLink.html">NestLink</a>, <a href="../../workflows/html/generegulation.html">generegulation</a>, <a href="../../workflows/html/sequencing.html">sequencing</a>, <a class="cran_package" href="http://cran.rstudio.com/web/packages/CleanBSequences/index.html">CleanBSequences</a>, <a class="cran_package" href="http://cran.rstudio.com/web/packages/STRMPS/index.html">STRMPS</a>, <a class="cran_package" href="http://cran.rstudio.com/web/packages/SubVis/index.html">SubVis</a></td> </tr> <tr> <td>Imports Me</td> <td><a href="../../bioc/html/AllelicImbalance.html">AllelicImbalance</a>, <a href="../../bioc/html/AneuFinder.html">AneuFinder</a>, <a href="../../bioc/html/AnnotationHubData.html">AnnotationHubData</a>, <a href="../../bioc/html/appreci8R.html">appreci8R</a>, <a href="../../bioc/html/AssessORF.html">AssessORF</a>, <a href="../../bioc/html/ATACseqQC.html">ATACseqQC</a>, <a href="../../bioc/html/BBCAnalyzer.html">BBCAnalyzer</a>, <a href="../../bioc/html/BCRANK.html">BCRANK</a>, <a href="../../bioc/html/bcSeq.html">bcSeq</a>, <a href="../../bioc/html/BEAT.html">BEAT</a>, <a href="../../bioc/html/BgeeCall.html">BgeeCall</a>, <a href="../../bioc/html/biovizBase.html">biovizBase</a>, <a href="../../bioc/html/branchpointer.html">branchpointer</a>, <a href="../../bioc/html/bsseq.html">bsseq</a>, <a href="../../bioc/html/BUMHMM.html">BUMHMM</a>, <a href="../../bioc/html/BUSpaRse.html">BUSpaRse</a>, <a href="../../bioc/html/CAGEr.html">CAGEr</a>, <a href="../../bioc/html/CellBarcode.html">CellBarcode</a>, <a href="../../bioc/html/ChIPpeakAnno.html">ChIPpeakAnno</a>, <a href="../../bioc/html/ChIPseqR.html">ChIPseqR</a>, <a href="../../bioc/html/ChIPsim.html">ChIPsim</a>, <a href="../../bioc/html/chromVAR.html">chromVAR</a>, <a href="../../bioc/html/circRNAprofiler.html">circRNAprofiler</a>, <a href="../../bioc/html/CircSeqAlignTk.html">CircSeqAlignTk</a>, <a href="../../bioc/html/cleanUpdTSeq.html">cleanUpdTSeq</a>, <a href="../../bioc/html/CleanUpRNAseq.html">CleanUpRNAseq</a>, <a href="../../bioc/html/cliProfiler.html">cliProfiler</a>, <a href="../../bioc/html/CNEr.html">CNEr</a>, <a href="../../bioc/html/CNVfilteR.html">CNVfilteR</a>, <a href="../../bioc/html/cogeqc.html">cogeqc</a>, <a href="../../bioc/html/compEpiTools.html">compEpiTools</a>, <a href="../../bioc/html/consensusDE.html">consensusDE</a>, <a href="../../bioc/html/coRdon.html">coRdon</a>, <a href="../../bioc/html/crisprBase.html">crisprBase</a>, <a href="../../bioc/html/crisprBowtie.html">crisprBowtie</a>, <a href="../../bioc/html/crisprDesign.html">crisprDesign</a>, <a href="../../bioc/html/crisprScore.html">crisprScore</a>, <a href="../../bioc/html/crisprShiny.html">crisprShiny</a>, <a href="../../bioc/html/CrispRVariants.html">CrispRVariants</a>, <a href="../../bioc/html/crisprViz.html">crisprViz</a>, <a href="../../bioc/html/customProDB.html">customProDB</a>, <a href="../../bioc/html/dada2.html">dada2</a>, <a href="../../bioc/html/dagLogo.html">dagLogo</a>, <a href="../../bioc/html/DAMEfinder.html">DAMEfinder</a>, <a href="../../bioc/html/Damsel.html">Damsel</a>, <a href="../../bioc/html/decompTumor2Sig.html">decompTumor2Sig</a>, <a href="../../bioc/html/diffHic.html">diffHic</a>, <a href="../../bioc/html/DNAshapeR.html">DNAshapeR</a>, <a href="../../bioc/html/DominoEffect.html">DominoEffect</a>, <a href="../../bioc/html/doubletrouble.html">doubletrouble</a>, <a href="../../bioc/html/DuplexDiscovereR.html">DuplexDiscovereR</a>, <a href="../../bioc/html/easyRNASeq.html">easyRNASeq</a>, <a href="../../bioc/html/EDASeq.html">EDASeq</a>, <a href="../../bioc/html/enhancerHomologSearch.html">enhancerHomologSearch</a>, <a href="../../bioc/html/ensembldb.html">ensembldb</a>, <a href="../../bioc/html/EpiTxDb.html">EpiTxDb</a>, <a href="../../bioc/html/esATAC.html">esATAC</a>, <a href="../../bioc/html/eudysbiome.html">eudysbiome</a>, <a href="../../bioc/html/EventPointer.html">EventPointer</a>, <a href="../../bioc/html/factR.html">factR</a>, <a href="../../bioc/html/FastqCleaner.html">FastqCleaner</a>, <a href="../../bioc/html/FLAMES.html">FLAMES</a>, <a href="../../bioc/html/G4SNVHunter.html">G4SNVHunter</a>, <a href="../../bioc/html/GA4GHclient.html">GA4GHclient</a>, <a href="../../bioc/html/gcapc.html">gcapc</a>, <a href="../../bioc/html/gcrma.html">gcrma</a>, <a href="../../bioc/html/gDNAx.html">gDNAx</a>, <a href="../../bioc/html/GeneRegionScan.html">GeneRegionScan</a>, <a href="../../bioc/html/genomation.html">genomation</a>, <a href="../../bioc/html/GenomAutomorphism.html">GenomAutomorphism</a>, <a href="../../bioc/html/GenomicAlignments.html">GenomicAlignments</a>, <a href="../../bioc/html/GenomicDistributions.html">GenomicDistributions</a>, <a href="../../bioc/html/GenomicFeatures.html">GenomicFeatures</a>, <a href="../../bioc/html/GenomicScores.html">GenomicScores</a>, <a href="../../bioc/html/GenVisR.html">GenVisR</a>, <a href="../../bioc/html/ggbio.html">ggbio</a>, <a href="../../bioc/html/ggmsa.html">ggmsa</a>, <a href="../../bioc/html/girafe.html">girafe</a>, <a href="../../bioc/html/gmapR.html">gmapR</a>, <a href="../../bioc/html/gmoviz.html">gmoviz</a>, <a href="../../bioc/html/GRaNIE.html">GRaNIE</a>, <a href="../../bioc/html/GUIDEseq.html">GUIDEseq</a>, <a href="../../bioc/html/Gviz.html">Gviz</a>, <a href="../../bioc/html/gwascat.html">gwascat</a>, <a href="../../bioc/html/h5vc.html">h5vc</a>, <a href="../../bioc/html/heatmaps.html">heatmaps</a>, <a href="../../bioc/html/HiLDA.html">HiLDA</a>, <a href="../../bioc/html/HiTC.html">HiTC</a>, <a href="../../bioc/html/icetea.html">icetea</a>, <a href="../../bioc/html/idpr.html">idpr</a>, <a href="../../bioc/html/IONiseR.html">IONiseR</a>, <a href="../../bioc/html/ipdDb.html">ipdDb</a>, <a href="../../bioc/html/KEGGREST.html">KEGGREST</a>, <a href="../../bioc/html/LinTInd.html">LinTInd</a>, <a href="../../bioc/html/LymphoSeq.html">LymphoSeq</a>, <a href="../../bioc/html/m6Aboost.html">m6Aboost</a>, <a href="../../bioc/html/MADSEQ.html">MADSEQ</a>, <a href="../../bioc/html/MatrixRider.html">MatrixRider</a>, <a href="../../bioc/html/MDTS.html">MDTS</a>, <a href="../../bioc/html/MEDIPS.html">MEDIPS</a>, <a href="../../bioc/html/MEDME.html">MEDME</a>, <a href="../../bioc/html/memes.html">memes</a>, <a href="../../bioc/html/MesKit.html">MesKit</a>, <a href="../../bioc/html/metaseqR2.html">metaseqR2</a>, <a href="../../bioc/html/methimpute.html">methimpute</a>, <a href="../../bioc/html/methodical.html">methodical</a>, <a href="../../bioc/html/methylPipe.html">methylPipe</a>, <a href="../../bioc/html/methylscaper.html">methylscaper</a>, <a href="../../bioc/html/mia.html">mia</a>, <a href="../../bioc/html/microbiome.html">microbiome</a>, <a href="../../bioc/html/MicrobiotaProcess.html">MicrobiotaProcess</a>, <a href="../../bioc/html/microRNA.html">microRNA</a>, <a href="../../bioc/html/MMDiff2.html">MMDiff2</a>, <a href="../../bioc/html/mobileRNA.html">mobileRNA</a>, <a href="../../bioc/html/monaLisa.html">monaLisa</a>, <a href="../../bioc/html/Motif2Site.html">Motif2Site</a>, <a href="../../bioc/html/motifbreakR.html">motifbreakR</a>, <a href="../../bioc/html/motifcounter.html">motifcounter</a>, <a href="../../bioc/html/motifmatchr.html">motifmatchr</a>, <a href="../../bioc/html/MotifPeeker.html">MotifPeeker</a>, <a href="../../bioc/html/motifStack.html">motifStack</a>, <a href="../../bioc/html/MSA2dist.html">MSA2dist</a>, <a href="../../bioc/html/MSnID.html">MSnID</a>, <a href="../../bioc/html/MSstatsLiP.html">MSstatsLiP</a>, <a href="../../bioc/html/MSstatsPTM.html">MSstatsPTM</a>, <a href="../../bioc/html/multicrispr.html">multicrispr</a>, <a href="../../bioc/html/MungeSumstats.html">MungeSumstats</a>, <a href="../../bioc/html/musicatk.html">musicatk</a>, <a href="../../bioc/html/MutationalPatterns.html">MutationalPatterns</a>, <a href="../../bioc/html/NanoMethViz.html">NanoMethViz</a>, <a href="../../bioc/html/NanoStringNCTools.html">NanoStringNCTools</a>, <a href="../../bioc/html/ngsReports.html">ngsReports</a>, <a href="../../bioc/html/nucleR.html">nucleR</a>, <a href="../../bioc/html/oligoClasses.html">oligoClasses</a>, <a href="../../bioc/html/OmaDB.html">OmaDB</a>, <a href="../../bioc/html/openPrimeR.html">openPrimeR</a>, <a href="../../bioc/html/ORFik.html">ORFik</a>, <a href="../../bioc/html/OTUbase.html">OTUbase</a>, <a href="../../bioc/html/packFinder.html">packFinder</a>, <a href="../../bioc/html/pdInfoBuilder.html">pdInfoBuilder</a>, <a href="../../bioc/html/PhyloProfile.html">PhyloProfile</a>, <a href="../../bioc/html/phyloseq.html">phyloseq</a>, <a href="../../bioc/html/PICB.html">PICB</a>, <a href="../../bioc/html/pipeFrame.html">pipeFrame</a>, <a href="../../bioc/html/planttfhunter.html">planttfhunter</a>, <a href="../../bioc/html/podkat.html">podkat</a>, <a href="../../bioc/html/primirTSS.html">primirTSS</a>, <a href="../../bioc/html/proBAMr.html">proBAMr</a>, <a href="../../bioc/html/procoil.html">procoil</a>, <a href="../../bioc/html/ProteoDisco.html">ProteoDisco</a>, <a href="../../bioc/html/PureCN.html">PureCN</a>, <a href="../../bioc/html/Pviz.html">Pviz</a>, <a href="../../bioc/html/qPLEXanalyzer.html">qPLEXanalyzer</a>, <a href="../../bioc/html/qsea.html">qsea</a>, <a href="../../bioc/html/QuasR.html">QuasR</a>, <a href="../../bioc/html/r3Cseq.html">r3Cseq</a>, <a href="../../bioc/html/raer.html">raer</a>, <a href="../../bioc/html/ramwas.html">ramwas</a>, <a href="../../bioc/html/RCAS.html">RCAS</a>, <a href="../../bioc/html/Rcpi.html">Rcpi</a>, <a href="../../bioc/html/recoup.html">recoup</a>, <a href="../../bioc/html/regioneR.html">regioneR</a>, <a href="../../bioc/html/regutools.html">regutools</a>, <a href="../../bioc/html/REMP.html">REMP</a>, <a href="../../bioc/html/Repitools.html">Repitools</a>, <a href="../../bioc/html/RESOLVE.html">RESOLVE</a>, <a href="../../bioc/html/rfaRm.html">rfaRm</a>, <a href="../../bioc/html/rGADEM.html">rGADEM</a>, <a href="../../bioc/html/rhinotypeR.html">rhinotypeR</a>, <a href="../../bioc/html/RiboCrypt.html">RiboCrypt</a>, <a href="../../bioc/html/ribosomeProfilingQC.html">ribosomeProfilingQC</a>, <a href="../../bioc/html/RNAmodR.html">RNAmodR</a>, <a href="../../bioc/html/rprimer.html">rprimer</a>, <a href="../../bioc/html/Rqc.html">Rqc</a>, <a href="../../bioc/html/rtracklayer.html">rtracklayer</a>, <a href="../../bioc/html/sarks.html">sarks</a>, <a href="../../bioc/html/scanMiR.html">scanMiR</a>, <a href="../../bioc/html/scanMiRApp.html">scanMiRApp</a>, <a href="../../bioc/html/scifer.html">scifer</a>, <a href="../../bioc/html/scmeth.html">scmeth</a>, <a href="../../bioc/html/SCOPE.html">SCOPE</a>, <a href="../../bioc/html/scoreInvHap.html">scoreInvHap</a>, <a href="../../bioc/html/scoup.html">scoup</a>, <a href="../../bioc/html/scPipe.html">scPipe</a>, <a href="../../bioc/html/scruff.html">scruff</a>, <a href="../../bioc/html/seqArchR.html">seqArchR</a>, <a href="../../bioc/html/seqArchRplus.html">seqArchRplus</a>, <a href="../../bioc/html/SeqArray.html">SeqArray</a>, <a href="../../bioc/html/seqPattern.html">seqPattern</a>, <a href="../../bioc/html/SGSeq.html">SGSeq</a>, <a href="../../bioc/html/signeR.html">signeR</a>, <a href="../../bioc/html/SigsPack.html">SigsPack</a>, <a href="../../bioc/html/SingleMoleculeFootprinting.html">SingleMoleculeFootprinting</a>, <a href="../../bioc/html/sitadela.html">sitadela</a>, <a href="../../bioc/html/SNPhood.html">SNPhood</a>, <a href="../../bioc/html/soGGi.html">soGGi</a>, <a href="../../bioc/html/SomaticSignatures.html">SomaticSignatures</a>, <a href="../../bioc/html/SparseSignatures.html">SparseSignatures</a>, <a href="../../bioc/html/spiky.html">spiky</a>, <a href="../../bioc/html/SpliceWiz.html">SpliceWiz</a>, <a href="../../bioc/html/SPLINTER.html">SPLINTER</a>, <a href="../../bioc/html/sscu.html">sscu</a>, <a href="../../bioc/html/StructuralVariantAnnotation.html">StructuralVariantAnnotation</a>, <a href="../../bioc/html/supersigs.html">supersigs</a>, <a href="../../bioc/html/surfaltr.html">surfaltr</a>, <a href="../../bioc/html/svaRetro.html">svaRetro</a>, <a href="../../bioc/html/synapter.html">synapter</a>, <a href="../../bioc/html/SynExtend.html">SynExtend</a>, <a href="../../bioc/html/SynMut.html">SynMut</a>, <a href="../../bioc/html/syntenet.html">syntenet</a>, <a href="../../bioc/html/TAPseq.html">TAPseq</a>, <a href="../../bioc/html/TFBSTools.html">TFBSTools</a>, <a href="../../bioc/html/transite.html">transite</a>, <a href="../../bioc/html/tRNA.html">tRNA</a>, <a href="../../bioc/html/tRNAdbImport.html">tRNAdbImport</a>, <a href="../../bioc/html/tRNAscanImport.html">tRNAscanImport</a>, <a href="../../bioc/html/TVTB.html">TVTB</a>, <a href="../../bioc/html/txcutr.html">txcutr</a>, <a href="../../bioc/html/tximeta.html">tximeta</a>, <a href="../../bioc/html/Ularcirc.html">Ularcirc</a>, <a href="../../bioc/html/UMI4Cats.html">UMI4Cats</a>, <a href="../../bioc/html/universalmotif.html">universalmotif</a>, <a href="../../bioc/html/VariantAnnotation.html">VariantAnnotation</a>, <a href="../../bioc/html/VariantExperiment.html">VariantExperiment</a>, <a href="../../bioc/html/VariantFiltering.html">VariantFiltering</a>, <a href="../../bioc/html/VariantTools.html">VariantTools</a>, <a href="../../bioc/html/wavClusteR.html">wavClusteR</a>, <a href="../../bioc/html/XNAString.html">XNAString</a>, <a href="../../bioc/html/YAPSA.html">YAPSA</a>, <a href="../../data/annotation/html/EuPathDB.html">EuPathDB</a>, <a href="../../data/annotation/html/FDb.InfiniumMethylation.hg18.html">FDb.InfiniumMethylation.hg18</a>, <a href="../../data/annotation/html/FDb.InfiniumMethylation.hg19.html">FDb.InfiniumMethylation.hg19</a>, <a href="../../data/annotation/html/pd.081229.hg18.promoter.medip.hx1.html">pd.081229.hg18.promoter.medip.hx1</a>, <a href="../../data/annotation/html/pd.2006.07.18.hg18.refseq.promoter.html">pd.2006.07.18.hg18.refseq.promoter</a>, <a href="../../data/annotation/html/pd.2006.07.18.mm8.refseq.promoter.html">pd.2006.07.18.mm8.refseq.promoter</a>, <a href="../../data/annotation/html/pd.2006.10.31.rn34.refseq.promoter.html">pd.2006.10.31.rn34.refseq.promoter</a>, <a href="../../data/annotation/html/pd.charm.hg18.example.html">pd.charm.hg18.example</a>, <a href="../../data/annotation/html/pd.feinberg.hg18.me.hx1.html">pd.feinberg.hg18.me.hx1</a>, <a href="../../data/annotation/html/pd.feinberg.mm8.me.hx1.html">pd.feinberg.mm8.me.hx1</a>, <a href="../../data/annotation/html/pd.mirna.3.1.html">pd.mirna.3.1</a>, <a href="../../data/experiment/html/MetaScope.html">MetaScope</a>, <a href="../../data/experiment/html/microbiomeDataSets.html">microbiomeDataSets</a>, <a href="../../data/experiment/html/pd.atdschip.tiling.html">pd.atdschip.tiling</a>, <a href="../../data/experiment/html/PhyloProfileData.html">PhyloProfileData</a>, <a href="../../data/experiment/html/systemPipeRdata.html">systemPipeRdata</a>, <a href="../../workflows/html/seqpac.html">seqpac</a>, <a class="cran_package" href="http://cran.rstudio.com/web/packages/alakazam/index.html">alakazam</a>, <a class="cran_package" href="http://cran.rstudio.com/web/packages/AntibodyForests/index.html">AntibodyForests</a>, <a class="cran_package" href="http://cran.rstudio.com/web/packages/BASiNET/index.html">BASiNET</a>, <a class="cran_package" href="http://cran.rstudio.com/web/packages/BASiNETEntropy/index.html">BASiNETEntropy</a>, <a class="cran_package" href="http://cran.rstudio.com/web/packages/biomartr/index.html">biomartr</a>, <a class="cran_package" href="http://cran.rstudio.com/web/packages/copyseparator/index.html">copyseparator</a>, <a class="cran_package" href="http://cran.rstudio.com/web/packages/crispRdesignR/index.html">crispRdesignR</a>, <a class="cran_package" href="http://cran.rstudio.com/web/packages/CSESA/index.html">CSESA</a>, <a class="cran_package" href="http://cran.rstudio.com/web/packages/cubar/index.html">cubar</a>, <a class="cran_package" href="http://cran.rstudio.com/web/packages/deepredeff/index.html">deepredeff</a>, <a class="cran_package" href="http://cran.rstudio.com/web/packages/DNAmotif/index.html">DNAmotif</a>, <a class="cran_package" href="http://cran.rstudio.com/web/packages/dowser/index.html">dowser</a>, <a class="cran_package" href="http://cran.rstudio.com/web/packages/EncDNA/index.html">EncDNA</a>, <a class="cran_package" href="http://cran.rstudio.com/web/packages/ensembleTax/index.html">ensembleTax</a>, <a class="cran_package" href="http://cran.rstudio.com/web/packages/EpiSemble/index.html">EpiSemble</a>, <a class="cran_package" href="http://cran.rstudio.com/web/packages/GB5mcPred/index.html">GB5mcPred</a>, <a class="cran_package" href="http://cran.rstudio.com/web/packages/genBaRcode/index.html">genBaRcode</a>, <a class="cran_package" href="http://cran.rstudio.com/web/packages/geneHapR/index.html">geneHapR</a>, <a class="cran_package" href="http://cran.rstudio.com/web/packages/GenomicSig/index.html">GenomicSig</a>, <a class="cran_package" href="http://cran.rstudio.com/web/packages/hoardeR/index.html">hoardeR</a>, <a class="cran_package" href="http://cran.rstudio.com/web/packages/ICAMS/index.html">ICAMS</a>, <a class="cran_package" href="http://cran.rstudio.com/web/packages/iimi/index.html">iimi</a>, <a class="cran_package" href="http://cran.rstudio.com/web/packages/immuneSIM/index.html">immuneSIM</a>, <a class="cran_package" href="http://cran.rstudio.com/web/packages/kibior/index.html">kibior</a>, <a class="cran_package" href="http://cran.rstudio.com/web/packages/kmeRs/index.html">kmeRs</a>, <a class="cran_package" href="http://cran.rstudio.com/web/packages/kmeRtone/index.html">kmeRtone</a>, <a class="cran_package" href="http://cran.rstudio.com/web/packages/longreadvqs/index.html">longreadvqs</a>, <a class="cran_package" href="http://cran.rstudio.com/web/packages/metaCluster/index.html">metaCluster</a>, <a class="cran_package" href="http://cran.rstudio.com/web/packages/MIC/index.html">MIC</a>, <a class="cran_package" href="http://cran.rstudio.com/web/packages/MicroSEC/index.html">MicroSEC</a>, <a class="cran_package" href="http://cran.rstudio.com/web/packages/MitoHEAR/index.html">MitoHEAR</a>, <a class="cran_package" href="http://cran.rstudio.com/web/packages/MixviR/index.html">MixviR</a>, <a class="cran_package" href="http://cran.rstudio.com/web/packages/ogrdbstats/index.html">ogrdbstats</a>, <a class="cran_package" href="http://cran.rstudio.com/web/packages/OpEnHiMR/index.html">OpEnHiMR</a>, <a class="cran_package" href="http://cran.rstudio.com/web/packages/PACVr/index.html">PACVr</a>, <a class="cran_package" href="http://cran.rstudio.com/web/packages/Platypus/index.html">Platypus</a>, <a class="cran_package" href="http://cran.rstudio.com/web/packages/PredCRG/index.html">PredCRG</a>, <a class="cran_package" href="http://cran.rstudio.com/web/packages/refseqR/index.html">refseqR</a>, <a class="cran_package" href="http://cran.rstudio.com/web/packages/revert/index.html">revert</a>, <a class="cran_package" href="http://cran.rstudio.com/web/packages/SeedMatchR/index.html">SeedMatchR</a>, <a class="cran_package" href="http://cran.rstudio.com/web/packages/seqmagick/index.html">seqmagick</a>, <a class="cran_package" href="http://cran.rstudio.com/web/packages/simMP/index.html">simMP</a>, <a class="cran_package" href="http://cran.rstudio.com/web/packages/SMITIDstruct/index.html">SMITIDstruct</a>, <a class="cran_package" href="http://cran.rstudio.com/web/packages/vhcub/index.html">vhcub</a></td> </tr> <tr> <td>Suggests Me</td> <td><a href="../../bioc/html/alabaster.files.html">alabaster.files</a>, <a href="../../bioc/html/annotate.html">annotate</a>, <a href="../../bioc/html/AnnotationForge.html">AnnotationForge</a>, <a href="../../bioc/html/AnnotationHub.html">AnnotationHub</a>, <a href="../../bioc/html/autonomics.html">autonomics</a>, <a href="../../bioc/html/bambu.html">bambu</a>, <a href="../../bioc/html/BANDITS.html">BANDITS</a>, <a href="../../bioc/html/CSAR.html">CSAR</a>, <a href="../../bioc/html/eisaR.html">eisaR</a>, <a href="../../bioc/html/GenomicFiles.html">GenomicFiles</a>, <a href="../../bioc/html/GenomicRanges.html">GenomicRanges</a>, <a href="../../bioc/html/GenomicTuples.html">GenomicTuples</a>, <a href="../../bioc/html/ggseqalign.html">ggseqalign</a>, <a href="../../bioc/html/GWASTools.html">GWASTools</a>, <a href="../../bioc/html/HiContacts.html">HiContacts</a>, <a href="../../bioc/html/HPiP.html">HPiP</a>, <a href="../../bioc/html/maftools.html">maftools</a>, <a href="../../bioc/html/methrix.html">methrix</a>, <a href="../../bioc/html/methylumi.html">methylumi</a>, <a href="../../bioc/html/MiRaGE.html">MiRaGE</a>, <a href="../../bioc/html/mitoClone2.html">mitoClone2</a>, <a href="../../bioc/html/nuCpos.html">nuCpos</a>, <a href="../../bioc/html/plyinteractions.html">plyinteractions</a>, <a href="../../bioc/html/RNAmodR.AlkAnilineSeq.html">RNAmodR.AlkAnilineSeq</a>, <a href="../../bioc/html/rpx.html">rpx</a>, <a href="../../bioc/html/rTRM.html">rTRM</a>, <a href="../../bioc/html/screenCounter.html">screenCounter</a>, <a href="../../bioc/html/spatzie.html">spatzie</a>, <a href="../../bioc/html/splatter.html">splatter</a>, <a href="../../bioc/html/systemPipeTools.html">systemPipeTools</a>, <a href="../../bioc/html/treeio.html">treeio</a>, <a href="../../bioc/html/tripr.html">tripr</a>, <a href="../../bioc/html/XVector.html">XVector</a>, <a href="../../data/annotation/html/SNPlocs.Hsapiens.dbSNP144.GRCh37.html">SNPlocs.Hsapiens.dbSNP144.GRCh37</a>, <a href="../../data/annotation/html/SNPlocs.Hsapiens.dbSNP144.GRCh38.html">SNPlocs.Hsapiens.dbSNP144.GRCh38</a>, <a href="../../data/annotation/html/SNPlocs.Hsapiens.dbSNP149.GRCh38.html">SNPlocs.Hsapiens.dbSNP149.GRCh38</a>, <a href="../../data/annotation/html/SNPlocs.Hsapiens.dbSNP150.GRCh38.html">SNPlocs.Hsapiens.dbSNP150.GRCh38</a>, <a href="../../data/annotation/html/SNPlocs.Hsapiens.dbSNP155.GRCh37.html">SNPlocs.Hsapiens.dbSNP155.GRCh37</a>, <a href="../../data/annotation/html/SNPlocs.Hsapiens.dbSNP155.GRCh38.html">SNPlocs.Hsapiens.dbSNP155.GRCh38</a>, <a href="../../data/annotation/html/XtraSNPlocs.Hsapiens.dbSNP144.GRCh37.html">XtraSNPlocs.Hsapiens.dbSNP144.GRCh37</a>, <a href="../../data/annotation/html/XtraSNPlocs.Hsapiens.dbSNP144.GRCh38.html">XtraSNPlocs.Hsapiens.dbSNP144.GRCh38</a>, <a href="../../data/experiment/html/BeadArrayUseCases.html">BeadArrayUseCases</a>, <a class="cran_package" href="http://cran.rstudio.com/web/packages/bbl/index.html">bbl</a>, <a class="cran_package" href="http://cran.rstudio.com/web/packages/bio3d/index.html">bio3d</a>, <a class="cran_package" href="http://cran.rstudio.com/web/packages/DDPNA/index.html">DDPNA</a>, <a class="cran_package" href="http://cran.rstudio.com/web/packages/file2meco/index.html">file2meco</a>, <a class="cran_package" href="http://cran.rstudio.com/web/packages/geneviewer/index.html">geneviewer</a>, <a class="cran_package" href="http://cran.rstudio.com/web/packages/gkmSVM/index.html">gkmSVM</a>, <a class="cran_package" href="http://cran.rstudio.com/web/packages/karyotapR/index.html">karyotapR</a>, <a class="cran_package" href="http://cran.rstudio.com/web/packages/maGUI/index.html">maGUI</a>, <a class="cran_package" href="http://cran.rstudio.com/web/packages/MARVEL/index.html">MARVEL</a>, <a class="cran_package" href="http://cran.rstudio.com/web/packages/msaR/index.html">msaR</a>, <a class="cran_package" href="http://cran.rstudio.com/web/packages/NameNeedle/index.html">NameNeedle</a>, <a class="cran_package" href="http://cran.rstudio.com/web/packages/orthGS/index.html">orthGS</a>, <a class="cran_package" href="http://cran.rstudio.com/web/packages/phangorn/index.html">phangorn</a>, <a class="cran_package" href="http://cran.rstudio.com/web/packages/polyRAD/index.html">polyRAD</a>, <a class="cran_package" href="http://cran.rstudio.com/web/packages/protr/index.html">protr</a>, <a class="cran_package" href="http://cran.rstudio.com/web/packages/seqtrie/index.html">seqtrie</a>, <a class="cran_package" href="http://cran.rstudio.com/web/packages/sigminer/index.html">sigminer</a>, <a class="cran_package" href="http://cran.rstudio.com/web/packages/Signac/index.html">Signac</a>, <a class="cran_package" href="http://cran.rstudio.com/web/packages/tidysq/index.html">tidysq</a></td> </tr> <tr> <td>Links To Me</td> <td><a href="../../bioc/html/DECIPHER.html">DECIPHER</a>, <a href="../../bioc/html/kebabs.html">kebabs</a>, <a href="../../bioc/html/MatrixRider.html">MatrixRider</a>, <a href="../../bioc/html/pwalign.html">pwalign</a>, <a href="../../bioc/html/Rsamtools.html">Rsamtools</a>, <a href="../../bioc/html/ShortRead.html">ShortRead</a>, <a href="../../bioc/html/triplex.html">triplex</a>, <a href="../../bioc/html/VariantAnnotation.html">VariantAnnotation</a>, <a href="../../bioc/html/VariantFiltering.html">VariantFiltering</a></td> </tr> <tr> <td>Build Report</td> <td><a href="https://bioconductor.org/checkResults/3.21/bioc-LATEST/Biostrings/">Build Report</a></td> </tr> </table> </details> <h3 id="archives">Package Archives</h3> <p>Follow <a href="/install/#install-bioconductor-packages">Installation</a> instructions to use this package in your R session.</p> <table class="full-width"> <tr> <td>Source Package</td> <td class="rpack"> <a onClick="javascript: pageTracker._trackPageview('../src/contrib/Biostrings_2.75.4.tar.gz'); " href="../src/contrib/Biostrings_2.75.4.tar.gz">Biostrings_2.75.4.tar.gz</a> </td> </tr> <tr> <td>Windows Binary (x86_64)</td> <td class="rpack"> <a onClick="javascript: pageTracker._trackPageview('../bin/windows/contrib/4.5/Biostrings_2.75.4.zip'); " href="../bin/windows/contrib/4.5/Biostrings_2.75.4.zip"> Biostrings_2.75.4.zip</a> </td> </tr> <tr> <td>macOS Binary (x86_64)</td> <td class="rpack"> <a onClick="javascript: pageTracker._trackPageview('../bin/macosx/big-sur-x86_64/contrib/4.5/Biostrings_2.75.4.tgz'); " href="../bin/macosx/big-sur-x86_64/contrib/4.5/Biostrings_2.75.4.tgz">Biostrings_2.75.4.tgz</a> </td> </tr> <tr> <td>macOS Binary (arm64)</td> <td class="rpack"> <a onClick="javascript: pageTracker._trackPageview('../bin/macosx/big-sur-arm64/contrib/4.5/Biostrings_2.75.4.tgz'); " href="../bin/macosx/big-sur-arm64/contrib/4.5/Biostrings_2.75.4.tgz">Biostrings_2.75.4.tgz</a> </td> </tr> <tr> <td id="svn-source">Source Repository</td> <td>git clone https://git.bioconductor.org/packages/Biostrings</td> </tr> <tr> <td id="svn-source">Source Repository (Developer Access)</td> <td>git clone git@git.bioconductor.org:packages/Biostrings</td> </tr> <tr> <td>Bioc Package Browser</td> <td><a href="https://code.bioconductor.org/browse/Biostrings/devel/">https://code.bioconductor.org/browse/Biostrings/</a></td> </tr> <tr> <td>Package Short Url</td> <td><a title="For citation in 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