Articles | BioData Mining

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itemtype="http://schema.org/ScholarlyArticle"> <h3 class="c-listing__title" itemprop="name"> <a itemprop="url" data-test="title-link" href="/articles/10.1186/s13040-024-00404-x" data-track="select_search_result" data-track-context="bmc search results page or article listing">Transcriptome-based network analysis related to regulatory T cells infiltration identified RCN1 as a potential biomarker for prognosis in clear cell renal cell carcinoma</a> </h3> <p> Regulatory T cells (Tregs) play a critical role in shaping the immunosuppressive microenvironment within tumors. Investigating the role of Tregs in Clear cell renal cell carcinoma (ccRCC) is crucial for identi... </p> <div class="c-listing__authors u-mb-0" data-test="ResultList-authors"> <span class="u-visually-hidden">Authors: </span> <span class="c-listing__authors-list">Yang Qixin, Huang Jing, He Jiang, Liu Xueyang, Yu Lu and Li Yuehua</span> </div> <div data-test="teaser-citation"> <span class="u-visually-hidden">Citation:</span> <em data-test="journal-title">BioData Mining</em> 2024 <span>17</span>:51 </div> <div class="c-listing__metadata"> <span data-test="result-list"><span class="u-visually-hidden">Content type: </span>Research</span> <span data-test="published-on">Published on: <span itemprop="datePublished">14 November 2024</span></span> </div> <ul class="c-listing__view-options" data-test="article-list-search-results"> <li> <a href="/articles/10.1186/s13040-024-00404-x" data-track="select_search_result" data-track-category="Article List" data-track-action="Click Fulltext" data-test="fulltext-link" data-track-label="10.1186/s13040-024-00404-x" itemprop="citation"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> Full Text </span> </a> </li> <li> <a data-track="content_download" data-track-context="article listing link" data-track-type="article pdf download" data-track-category="Article List" data-track-action="Download PDF" data-track-label="10.1186/s13040-024-00404-x" data-test="pdf-link" href="/counter/pdf/10.1186/s13040-024-00404-x.pdf"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> PDF </span> </a> </li> </ul> </article> </li> <li class="c-listing__item u-keyline"> <article class="c-listing__content u-mb-16" itemscope itemtype="http://schema.org/ScholarlyArticle"> <h3 class="c-listing__title" itemprop="name"> <a itemprop="url" data-test="title-link" href="/articles/10.1186/s13040-024-00400-1" data-track="select_search_result" data-track-context="bmc search results page or article listing">Deciphering the tissue-specific functional effect of Alzheimer risk SNPs with deep genome annotation</a> </h3> <p> Alzheimer’s disease (AD) is a highly heritable brain dementia, along with substantial failure of cognitive function. Large-scale genome-wide association studies (GWASs) have led to a set of SNPs significantly ... </p> <div class="c-listing__authors u-mb-0" data-test="ResultList-authors"> <span class="u-visually-hidden">Authors: </span> <span class="c-listing__authors-list">Pradeep Varathan Pugalenthi, Bing He, Linhui Xie, Kwangsik Nho, Andrew J. Saykin and Jingwen Yan</span> </div> <div data-test="teaser-citation"> <span class="u-visually-hidden">Citation:</span> <em data-test="journal-title">BioData Mining</em> 2024 <span>17</span>:50 </div> <div class="c-listing__metadata"> <span data-test="result-list"><span class="u-visually-hidden">Content type: </span>Research</span> <span data-test="published-on">Published on: <span itemprop="datePublished">13 November 2024</span></span> </div> <ul class="c-listing__view-options" data-test="article-list-search-results"> <li> <a href="/articles/10.1186/s13040-024-00400-1" data-track="select_search_result" data-track-category="Article List" data-track-action="Click Fulltext" data-test="fulltext-link" data-track-label="10.1186/s13040-024-00400-1" itemprop="citation"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> Full Text </span> </a> </li> <li> <a data-track="content_download" data-track-context="article listing link" data-track-type="article pdf download" data-track-category="Article List" data-track-action="Download PDF" data-track-label="10.1186/s13040-024-00400-1" data-test="pdf-link" href="/counter/pdf/10.1186/s13040-024-00400-1.pdf"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> PDF </span> </a> </li> </ul> </article> </li> <li class="c-listing__item u-keyline"> <article class="c-listing__content u-mb-16" itemscope itemtype="http://schema.org/ScholarlyArticle"> <h3 class="c-listing__title" itemprop="name"> <a itemprop="url" data-test="title-link" href="/articles/10.1186/s13040-024-00405-w" data-track="select_search_result" data-track-context="bmc search results page or article listing">Investigating potential drug targets for IgA nephropathy and membranous nephropathy through multi-queue plasma protein analysis: a Mendelian randomization study based on SMR and co-localization analysis</a> </h3> <p> Membranous nephropathy (MN) and IgA nephropathy (IgAN) pose challenges in clinical treatment with existing therapies primarily focusing on symptom relief and often yielding unsatisfactory outcomes. The search ... </p> <div class="c-listing__authors u-mb-0" data-test="ResultList-authors"> <span class="u-visually-hidden">Authors: </span> <span class="c-listing__authors-list">Xinyi Xu, Changhong Miao, Shirui Yang, Lu Xiao, Ying Gao, Fangying Wu and Jianbo Xu</span> </div> <div data-test="teaser-citation"> <span class="u-visually-hidden">Citation:</span> <em data-test="journal-title">BioData Mining</em> 2024 <span>17</span>:49 </div> <div class="c-listing__metadata"> <span data-test="result-list"><span class="u-visually-hidden">Content type: </span>Research</span> <span data-test="published-on">Published on: <span itemprop="datePublished">8 November 2024</span></span> </div> <ul class="c-listing__view-options" data-test="article-list-search-results"> <li> <a href="/articles/10.1186/s13040-024-00405-w" data-track="select_search_result" data-track-category="Article List" data-track-action="Click Fulltext" data-test="fulltext-link" data-track-label="10.1186/s13040-024-00405-w" itemprop="citation"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> Full Text </span> </a> </li> <li> <a data-track="content_download" data-track-context="article listing link" data-track-type="article pdf download" data-track-category="Article List" data-track-action="Download PDF" data-track-label="10.1186/s13040-024-00405-w" data-test="pdf-link" href="/counter/pdf/10.1186/s13040-024-00405-w.pdf"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> PDF </span> </a> </li> </ul> </article> </li> <li class="c-listing__item u-keyline"> <article class="c-listing__content u-mb-16" itemscope itemtype="http://schema.org/ScholarlyArticle"> <h3 class="c-listing__title" itemprop="name"> <a itemprop="url" data-test="title-link" href="/articles/10.1186/s13040-024-00395-9" data-track="select_search_result" data-track-context="bmc search results page or article listing">Deep joint learning diagnosis of Alzheimer’s disease based on multimodal feature fusion</a> </h3> <p> Alzheimer’s disease (AD) is an advanced and incurable neurodegenerative disease. Genetic variations are intrinsic etiological factors contributing to the abnormal expression of brain function and structure in ... </p> <div class="c-listing__authors u-mb-0" data-test="ResultList-authors"> <span class="u-visually-hidden">Authors: </span> <span class="c-listing__authors-list">Jingru Wang, Shipeng Wen, Wenjie Liu, Xianglian Meng and Zhuqing Jiao</span> </div> <div data-test="teaser-citation"> <span class="u-visually-hidden">Citation:</span> <em data-test="journal-title">BioData Mining</em> 2024 <span>17</span>:48 </div> <div class="c-listing__metadata"> <span data-test="result-list"><span class="u-visually-hidden">Content type: </span>Research</span> <span data-test="published-on">Published on: <span itemprop="datePublished">5 November 2024</span></span> </div> <ul class="c-listing__view-options" data-test="article-list-search-results"> <li> <a href="/articles/10.1186/s13040-024-00395-9" data-track="select_search_result" data-track-category="Article List" data-track-action="Click Fulltext" data-test="fulltext-link" data-track-label="10.1186/s13040-024-00395-9" itemprop="citation"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> Full Text </span> </a> </li> <li> <a data-track="content_download" data-track-context="article listing link" data-track-type="article pdf download" data-track-category="Article List" data-track-action="Download PDF" data-track-label="10.1186/s13040-024-00395-9" data-test="pdf-link" href="/counter/pdf/10.1186/s13040-024-00395-9.pdf"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> PDF </span> </a> </li> </ul> </article> </li> <li class="c-listing__item u-keyline"> <article class="c-listing__content u-mb-16" itemscope itemtype="http://schema.org/ScholarlyArticle"> <h3 class="c-listing__title" itemprop="name"> <a itemprop="url" data-test="title-link" href="/articles/10.1186/s13040-024-00403-y" data-track="select_search_result" data-track-context="bmc search results page or article listing">Modeling heterogeneity of Sudanese hospital stay in neonatal and maternal unit: non-parametric random effect models with Gamma distribution</a> </h3> <p> Studies looking into patient and institutional variables linked to extended hospital stays have arisen as a result of the increased focus on severe maternal morbidity and mortality. Understanding the length of... </p> <div class="c-listing__authors u-mb-0" data-test="ResultList-authors"> <span class="u-visually-hidden">Authors: </span> <span class="c-listing__authors-list">Amani Almohaimeed and Ishag Adam</span> </div> <div data-test="teaser-citation"> <span class="u-visually-hidden">Citation:</span> <em data-test="journal-title">BioData Mining</em> 2024 <span>17</span>:47 </div> <div class="c-listing__metadata"> <span data-test="result-list"><span class="u-visually-hidden">Content type: </span>Research</span> <span data-test="published-on">Published on: <span itemprop="datePublished">1 November 2024</span></span> </div> <ul class="c-listing__view-options" data-test="article-list-search-results"> <li> <a href="/articles/10.1186/s13040-024-00403-y" data-track="select_search_result" data-track-category="Article List" data-track-action="Click Fulltext" data-test="fulltext-link" data-track-label="10.1186/s13040-024-00403-y" itemprop="citation"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> Full Text </span> </a> </li> <li> <a data-track="content_download" data-track-context="article listing link" data-track-type="article pdf download" data-track-category="Article List" data-track-action="Download PDF" data-track-label="10.1186/s13040-024-00403-y" data-test="pdf-link" href="/counter/pdf/10.1186/s13040-024-00403-y.pdf"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> PDF </span> </a> </li> </ul> </article> </li> <li class="c-listing__item u-keyline"> <article class="c-listing__content u-mb-16" itemscope itemtype="http://schema.org/ScholarlyArticle"> <h3 class="c-listing__title" itemprop="name"> <a itemprop="url" data-test="title-link" href="/articles/10.1186/s13040-024-00397-7" data-track="select_search_result" data-track-context="bmc search results page or article listing">Ensemble feature selection and tabular data augmentation with generative adversarial networks to enhance cutaneous melanoma identification and interpretability</a> </h3> <p> Cutaneous melanoma is the most aggressive form of skin cancer, responsible for most skin cancer-related deaths. Recent advances in artificial intelligence, jointly with the availability of public dermoscopy im... </p> <div class="c-listing__authors u-mb-0" data-test="ResultList-authors"> <span class="u-visually-hidden">Authors: </span> <span class="c-listing__authors-list">Vanesa Gómez-Martínez, David Chushig-Muzo, Marit B. Veierød, Conceição Granja and Cristina Soguero-Ruiz</span> </div> <div data-test="teaser-citation"> <span class="u-visually-hidden">Citation:</span> <em data-test="journal-title">BioData Mining</em> 2024 <span>17</span>:46 </div> <div class="c-listing__metadata"> <span data-test="result-list"><span class="u-visually-hidden">Content type: </span>Research</span> <span data-test="published-on">Published on: <span itemprop="datePublished">30 October 2024</span></span> </div> <ul class="c-listing__view-options" data-test="article-list-search-results"> <li> <a href="/articles/10.1186/s13040-024-00397-7" data-track="select_search_result" data-track-category="Article List" data-track-action="Click Fulltext" data-test="fulltext-link" data-track-label="10.1186/s13040-024-00397-7" itemprop="citation"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> Full Text </span> </a> </li> <li> <a data-track="content_download" data-track-context="article listing link" data-track-type="article pdf download" data-track-category="Article List" data-track-action="Download PDF" data-track-label="10.1186/s13040-024-00397-7" data-test="pdf-link" href="/counter/pdf/10.1186/s13040-024-00397-7.pdf"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> PDF </span> </a> </li> </ul> </article> </li> <li class="c-listing__item u-keyline"> <article class="c-listing__content u-mb-16" itemscope itemtype="http://schema.org/ScholarlyArticle"> <h3 class="c-listing__title" itemprop="name"> <a itemprop="url" data-test="title-link" href="/articles/10.1186/s13040-024-00401-0" data-track="select_search_result" data-track-context="bmc search results page or article listing">Priority-Elastic net for binary disease outcome prediction based on multi-omics data</a> </h3> <p> High-dimensional omics data integration has emerged as a prominent avenue within the healthcare industry, presenting substantial potential to improve predictive models. However, the data integration process fa... </p> <div class="c-listing__authors u-mb-0" data-test="ResultList-authors"> <span class="u-visually-hidden">Authors: </span> <span class="c-listing__authors-list">Laila Musib, Roberta Coletti, Marta B. Lopes, Helena Mouriño and Eunice Carrasquinha</span> </div> <div data-test="teaser-citation"> <span class="u-visually-hidden">Citation:</span> <em data-test="journal-title">BioData Mining</em> 2024 <span>17</span>:45 </div> <div class="c-listing__metadata"> <span data-test="result-list"><span class="u-visually-hidden">Content type: </span>Methodology</span> <span data-test="published-on">Published on: <span itemprop="datePublished">29 October 2024</span></span> </div> <ul class="c-listing__view-options" data-test="article-list-search-results"> <li> <a href="/articles/10.1186/s13040-024-00401-0" data-track="select_search_result" data-track-category="Article List" data-track-action="Click Fulltext" data-test="fulltext-link" data-track-label="10.1186/s13040-024-00401-0" itemprop="citation"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> Full Text </span> </a> </li> <li> <a data-track="content_download" data-track-context="article listing link" data-track-type="article pdf download" data-track-category="Article List" data-track-action="Download PDF" data-track-label="10.1186/s13040-024-00401-0" data-test="pdf-link" href="/counter/pdf/10.1186/s13040-024-00401-0.pdf"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> PDF </span> </a> </li> </ul> </article> </li> <li class="c-listing__item u-keyline"> <article class="c-listing__content u-mb-16" itemscope itemtype="http://schema.org/ScholarlyArticle"> <h3 class="c-listing__title" itemprop="name"> <a itemprop="url" data-test="title-link" href="/articles/10.1186/s13040-024-00398-6" data-track="select_search_result" data-track-context="bmc search results page or article listing">A regularized Cox hierarchical model for incorporating annotation information in predictive omic studies</a> </h3> <p> Associated with high-dimensional omics data there are often “meta-features” such as biological pathways and functional annotations, summary statistics from similar studies that can be informative for predictin... </p> <div class="c-listing__authors u-mb-0" data-test="ResultList-authors"> <span class="u-visually-hidden">Authors: </span> <span class="c-listing__authors-list">Dixin Shen, Juan Pablo Lewinger and Eric Kawaguchi</span> </div> <div data-test="teaser-citation"> <span class="u-visually-hidden">Citation:</span> <em data-test="journal-title">BioData Mining</em> 2024 <span>17</span>:44 </div> <div class="c-listing__metadata"> <span data-test="result-list"><span class="u-visually-hidden">Content type: </span>Methodology</span> <span data-test="published-on">Published on: <span itemprop="datePublished">24 October 2024</span></span> </div> <ul class="c-listing__view-options" data-test="article-list-search-results"> <li> <a href="/articles/10.1186/s13040-024-00398-6" data-track="select_search_result" data-track-category="Article List" data-track-action="Click Fulltext" data-test="fulltext-link" data-track-label="10.1186/s13040-024-00398-6" itemprop="citation"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> Full Text </span> </a> </li> <li> <a data-track="content_download" data-track-context="article listing link" data-track-type="article pdf download" data-track-category="Article List" data-track-action="Download PDF" data-track-label="10.1186/s13040-024-00398-6" data-test="pdf-link" href="/counter/pdf/10.1186/s13040-024-00398-6.pdf"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> PDF </span> </a> </li> </ul> </article> </li> <li class="c-listing__item u-keyline"> <article class="c-listing__content u-mb-16" itemscope itemtype="http://schema.org/ScholarlyArticle"> <h3 class="c-listing__title" itemprop="name"> <a itemprop="url" data-test="title-link" href="/articles/10.1186/s13040-024-00402-z" data-track="select_search_result" data-track-context="bmc search results page or article listing">G4 & the balanced metric family – a novel approach to solving binary classification problems in medical device validation & verification studies</a> </h3> <p> In medical device validation and verification studies, the area under the receiver operating characteristic curve (AUROC) is often used as a primary endpoint despite multiple reports showing its limitations. H... </p> <div class="c-listing__authors u-mb-0" data-test="ResultList-authors"> <span class="u-visually-hidden">Authors: </span> <span class="c-listing__authors-list">Andrew Marra</span> </div> <div data-test="teaser-citation"> <span class="u-visually-hidden">Citation:</span> <em data-test="journal-title">BioData Mining</em> 2024 <span>17</span>:43 </div> <div class="c-listing__metadata"> <span data-test="result-list"><span class="u-visually-hidden">Content type: </span>Methodology</span> <span data-test="published-on">Published on: <span itemprop="datePublished">23 October 2024</span></span> </div> <ul class="c-listing__view-options" data-test="article-list-search-results"> <li> <a href="/articles/10.1186/s13040-024-00402-z" data-track="select_search_result" data-track-category="Article List" data-track-action="Click Fulltext" data-test="fulltext-link" data-track-label="10.1186/s13040-024-00402-z" itemprop="citation"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> Full Text </span> </a> </li> <li> <a data-track="content_download" data-track-context="article listing link" data-track-type="article pdf download" data-track-category="Article List" data-track-action="Download PDF" data-track-label="10.1186/s13040-024-00402-z" data-test="pdf-link" href="/counter/pdf/10.1186/s13040-024-00402-z.pdf"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> PDF </span> </a> </li> </ul> </article> </li> <li class="c-listing__item u-keyline"> <article class="c-listing__content u-mb-16" itemscope itemtype="http://schema.org/ScholarlyArticle"> <h3 class="c-listing__title" itemprop="name"> <a itemprop="url" data-test="title-link" href="/articles/10.1186/s13040-024-00396-8" data-track="select_search_result" data-track-context="bmc search results page or article listing">From COVID-19 to monkeypox: a novel predictive model for emerging infectious diseases</a> </h3> <p> The outbreak of emerging infectious diseases poses significant challenges to global public health. Accurate early forecasting is crucial for effective resource allocation and emergency response planning. This ... </p> <div class="c-listing__authors u-mb-0" data-test="ResultList-authors"> <span class="u-visually-hidden">Authors: </span> <span class="c-listing__authors-list">Deren Xu, Weng Howe Chan, Habibollah Haron, Hui Wen Nies and Kohbalan Moorthy</span> </div> <div data-test="teaser-citation"> <span class="u-visually-hidden">Citation:</span> <em data-test="journal-title">BioData Mining</em> 2024 <span>17</span>:42 </div> <div class="c-listing__metadata"> <span data-test="result-list"><span class="u-visually-hidden">Content type: </span>Research</span> <span data-test="published-on">Published on: <span itemprop="datePublished">22 October 2024</span></span> </div> <ul class="c-listing__view-options" data-test="article-list-search-results"> <li> <a href="/articles/10.1186/s13040-024-00396-8" data-track="select_search_result" data-track-category="Article List" data-track-action="Click Fulltext" data-test="fulltext-link" data-track-label="10.1186/s13040-024-00396-8" itemprop="citation"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> Full Text </span> </a> </li> <li> <a data-track="content_download" data-track-context="article listing link" data-track-type="article pdf download" data-track-category="Article List" data-track-action="Download PDF" data-track-label="10.1186/s13040-024-00396-8" data-test="pdf-link" href="/counter/pdf/10.1186/s13040-024-00396-8.pdf"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> PDF </span> </a> </li> </ul> </article> </li> <li class="c-listing__item u-keyline"> <article class="c-listing__content u-mb-16" itemscope itemtype="http://schema.org/ScholarlyArticle"> <h3 class="c-listing__title" itemprop="name"> <a itemprop="url" data-test="title-link" href="/articles/10.1186/s13040-024-00393-x" data-track="select_search_result" data-track-context="bmc search results page or article listing">PAGER: A novel genotype encoding strategy for modeling deviations from additivity in complex trait association studies</a> </h3> <p> The additive model of inheritance assumes that heterozygotes (Aa) are exactly intermediate in respect to homozygotes (AA and aa). While this model is commonly used in single-locus genetic association studies, ... </p> <div class="c-listing__authors u-mb-0" data-test="ResultList-authors"> <span class="u-visually-hidden">Authors: </span> <span class="c-listing__authors-list">Philip J. Freda, Attri Ghosh, Priyanka Bhandary, Nicholas Matsumoto, Apurva S. Chitre, Jiayan Zhou, Molly A. Hall, Abraham A. Palmer, Tayo Obafemi-Ajayi and Jason H. Moore</span> </div> <div data-test="teaser-citation"> <span class="u-visually-hidden">Citation:</span> <em data-test="journal-title">BioData Mining</em> 2024 <span>17</span>:41 </div> <div class="c-listing__metadata"> <span data-test="result-list"><span class="u-visually-hidden">Content type: </span>Research</span> <span data-test="published-on">Published on: <span itemprop="datePublished">11 October 2024</span></span> </div> <ul class="c-listing__view-options" data-test="article-list-search-results"> <li> <a href="/articles/10.1186/s13040-024-00393-x" data-track="select_search_result" data-track-category="Article List" data-track-action="Click Fulltext" data-test="fulltext-link" data-track-label="10.1186/s13040-024-00393-x" itemprop="citation"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> Full Text </span> </a> </li> <li> <a data-track="content_download" data-track-context="article listing link" data-track-type="article pdf download" data-track-category="Article List" data-track-action="Download PDF" data-track-label="10.1186/s13040-024-00393-x" data-test="pdf-link" href="/counter/pdf/10.1186/s13040-024-00393-x.pdf"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> PDF </span> </a> </li> </ul> </article> </li> <li class="c-listing__item u-keyline"> <article class="c-listing__content u-mb-16" itemscope itemtype="http://schema.org/ScholarlyArticle"> <h3 class="c-listing__title" itemprop="name"> <a itemprop="url" data-test="title-link" href="/articles/10.1186/s13040-024-00394-w" data-track="select_search_result" data-track-context="bmc search results page or article listing">Decoding the genetic comorbidity network of Alzheimer's disease</a> </h3> <p> Alzheimer's disease (AD) has emerged as the most prevalent and complex neurodegenerative disorder among the elderly population. However, the genetic comorbidity etiology for AD remains poorly understood. In th... </p> <div class="c-listing__authors u-mb-0" data-test="ResultList-authors"> <span class="u-visually-hidden">Authors: </span> <span class="c-listing__authors-list">Xueli Zhang, Dantong Li, Siting Ye, Shunming Liu, Shuo Ma, Min Li, Qiliang Peng, Lianting Hu, Xianwen Shang, Mingguang He and Lei Zhang</span> </div> <div data-test="teaser-citation"> <span class="u-visually-hidden">Citation:</span> <em data-test="journal-title">BioData Mining</em> 2024 <span>17</span>:40 </div> <div class="c-listing__metadata"> <span data-test="result-list"><span class="u-visually-hidden">Content type: </span>Research</span> <span data-test="published-on">Published on: <span itemprop="datePublished">9 October 2024</span></span> </div> <ul class="c-listing__view-options" data-test="article-list-search-results"> <li> <a href="/articles/10.1186/s13040-024-00394-w" data-track="select_search_result" data-track-category="Article List" data-track-action="Click Fulltext" data-test="fulltext-link" data-track-label="10.1186/s13040-024-00394-w" itemprop="citation"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> Full Text </span> </a> </li> <li> <a data-track="content_download" data-track-context="article listing link" data-track-type="article pdf download" data-track-category="Article List" data-track-action="Download PDF" data-track-label="10.1186/s13040-024-00394-w" data-test="pdf-link" href="/counter/pdf/10.1186/s13040-024-00394-w.pdf"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> PDF </span> </a> </li> </ul> <div class="c-listing__graphical-abstract u-mt-16"> <img src="https://static-content.springer.com/image/art%3A10.1186%2Fs13040-024-00394-w/MediaObjects/13040_2024_394_Figa_HTML.png" alt=""> </div> </article> </li> <li class="c-listing__item u-keyline"> <article class="c-listing__content u-mb-16" itemscope itemtype="http://schema.org/ScholarlyArticle"> <h3 class="c-listing__title" itemprop="name"> <a itemprop="url" data-test="title-link" href="/articles/10.1186/s13040-024-00392-y" data-track="select_search_result" data-track-context="bmc search results page or article listing">MDVarP: modifier ~ disease-causing variant pairs predictor</a> </h3> <p> Modifiers significantly impact disease phenotypes by modulating the effects of disease-causing variants, resulting in varying disease manifestations among individuals. However, identifying genetic interactions... </p> <div class="c-listing__authors u-mb-0" data-test="ResultList-authors"> <span class="u-visually-hidden">Authors: </span> <span class="c-listing__authors-list">Hong Sun, Yunqin Chen and Liangxiao Ma</span> </div> <div data-test="teaser-citation"> <span class="u-visually-hidden">Citation:</span> <em data-test="journal-title">BioData Mining</em> 2024 <span>17</span>:39 </div> <div class="c-listing__metadata"> <span data-test="result-list"><span class="u-visually-hidden">Content type: </span>Research</span> <span data-test="published-on">Published on: <span itemprop="datePublished">8 October 2024</span></span> </div> <ul class="c-listing__view-options" data-test="article-list-search-results"> <li> <a href="/articles/10.1186/s13040-024-00392-y" data-track="select_search_result" data-track-category="Article List" data-track-action="Click Fulltext" data-test="fulltext-link" data-track-label="10.1186/s13040-024-00392-y" itemprop="citation"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> Full Text </span> </a> </li> <li> <a data-track="content_download" data-track-context="article listing link" data-track-type="article pdf download" data-track-category="Article List" data-track-action="Download PDF" data-track-label="10.1186/s13040-024-00392-y" data-test="pdf-link" href="/counter/pdf/10.1186/s13040-024-00392-y.pdf"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> PDF </span> </a> </li> </ul> </article> </li> <li class="c-listing__item u-keyline"> <article class="c-listing__content u-mb-16" itemscope itemtype="http://schema.org/ScholarlyArticle"> <h3 class="c-listing__title" itemprop="name"> <a itemprop="url" data-test="title-link" href="/articles/10.1186/s13040-024-00391-z" data-track="select_search_result" data-track-context="bmc search results page or article listing">Deep learning-based approaches for multi-omics data integration and analysis</a> </h3> <p> The rapid growth of deep learning, as well as the vast and ever-growing amount of available data, have provided ample opportunity for advances in fusion and analysis of complex and heterogeneous data types. Di... </p> <div class="c-listing__authors u-mb-0" data-test="ResultList-authors"> <span class="u-visually-hidden">Authors: </span> <span class="c-listing__authors-list">Jenna L. Ballard, Zexuan Wang, Wenrui Li, Li Shen and Qi Long</span> </div> <div data-test="teaser-citation"> <span class="u-visually-hidden">Citation:</span> <em data-test="journal-title">BioData Mining</em> 2024 <span>17</span>:38 </div> <div class="c-listing__metadata"> <span data-test="result-list"><span class="u-visually-hidden">Content type: </span>Review</span> <span data-test="published-on">Published on: <span itemprop="datePublished">2 October 2024</span></span> </div> <ul class="c-listing__view-options" data-test="article-list-search-results"> <li> <a href="/articles/10.1186/s13040-024-00391-z" data-track="select_search_result" data-track-category="Article List" data-track-action="Click Fulltext" data-test="fulltext-link" data-track-label="10.1186/s13040-024-00391-z" itemprop="citation"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> Full Text </span> </a> </li> <li> <a data-track="content_download" data-track-context="article listing link" data-track-type="article pdf download" data-track-category="Article List" data-track-action="Download PDF" data-track-label="10.1186/s13040-024-00391-z" data-test="pdf-link" href="/counter/pdf/10.1186/s13040-024-00391-z.pdf"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> PDF </span> </a> </li> </ul> </article> </li> <li class="c-listing__item u-keyline"> <article class="c-listing__content u-mb-16" itemscope itemtype="http://schema.org/ScholarlyArticle"> <h3 class="c-listing__title" itemprop="name"> <a itemprop="url" data-test="title-link" href="/articles/10.1186/s13040-024-00390-0" data-track="select_search_result" data-track-context="bmc search results page or article listing">Assessing the limitations of relief-based algorithms in detecting higher-order interactions</a> </h3> <p> Epistasis, the interaction between genetic loci where the effect of one locus is influenced by one or more other loci, plays a crucial role in the genetic architecture of complex traits. However, as the number... </p> <div class="c-listing__authors u-mb-0" data-test="ResultList-authors"> <span class="u-visually-hidden">Authors: </span> <span class="c-listing__authors-list">Philip J. Freda, Suyu Ye, Robert Zhang, Jason H. Moore and Ryan J. Urbanowicz</span> </div> <div data-test="teaser-citation"> <span class="u-visually-hidden">Citation:</span> <em data-test="journal-title">BioData Mining</em> 2024 <span>17</span>:37 </div> <div class="c-listing__metadata"> <span data-test="result-list"><span class="u-visually-hidden">Content type: </span>Research</span> <span data-test="published-on">Published on: <span itemprop="datePublished">1 October 2024</span></span> </div> <ul class="c-listing__view-options" data-test="article-list-search-results"> <li> <a href="/articles/10.1186/s13040-024-00390-0" data-track="select_search_result" data-track-category="Article List" data-track-action="Click Fulltext" data-test="fulltext-link" data-track-label="10.1186/s13040-024-00390-0" itemprop="citation"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> Full Text </span> </a> </li> <li> <a data-track="content_download" data-track-context="article listing link" data-track-type="article pdf download" data-track-category="Article List" data-track-action="Download PDF" data-track-label="10.1186/s13040-024-00390-0" data-test="pdf-link" href="/counter/pdf/10.1186/s13040-024-00390-0.pdf"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> PDF </span> </a> </li> </ul> </article> </li> <li class="c-listing__item u-keyline"> <article class="c-listing__content u-mb-16" itemscope itemtype="http://schema.org/ScholarlyArticle"> <h3 class="c-listing__title" itemprop="name"> <a itemprop="url" data-test="title-link" href="/articles/10.1186/s13040-024-00389-7" data-track="select_search_result" data-track-context="bmc search results page or article listing">Identifying heterogeneous subgroups of systemic autoimmune diseases by applying a joint dimension reduction and clustering approach to immunomarkers</a> </h3> <p> The high complexity of systemic autoimmune diseases (SADs) has hindered precise management. This study aims to investigate heterogeneity in SADs. </p> <div class="c-listing__authors u-mb-0" data-test="ResultList-authors"> <span class="u-visually-hidden">Authors: </span> <span class="c-listing__authors-list">Chia-Wei Chang, Hsin-Yao Wang, Wan-Ying Lin, Yu-Chiang Wang, Wei-Lin Lo, Ting-Wei Lin, Jia-Ruei Yu and Yi-Ju Tseng</span> </div> <div data-test="teaser-citation"> <span class="u-visually-hidden">Citation:</span> <em data-test="journal-title">BioData Mining</em> 2024 <span>17</span>:36 </div> <div class="c-listing__metadata"> <span data-test="result-list"><span class="u-visually-hidden">Content type: </span>Research</span> <span data-test="published-on">Published on: <span itemprop="datePublished">16 September 2024</span></span> </div> <ul class="c-listing__view-options" data-test="article-list-search-results"> <li> <a href="/articles/10.1186/s13040-024-00389-7" data-track="select_search_result" data-track-category="Article List" data-track-action="Click Fulltext" data-test="fulltext-link" data-track-label="10.1186/s13040-024-00389-7" itemprop="citation"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> Full Text </span> </a> </li> <li> <a data-track="content_download" data-track-context="article listing link" data-track-type="article pdf download" data-track-category="Article List" data-track-action="Download PDF" data-track-label="10.1186/s13040-024-00389-7" data-test="pdf-link" href="/counter/pdf/10.1186/s13040-024-00389-7.pdf"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> PDF </span> </a> </li> </ul> </article> </li> <li class="c-listing__item u-keyline"> <article class="c-listing__content u-mb-16" itemscope itemtype="http://schema.org/ScholarlyArticle"> <h3 class="c-listing__title" itemprop="name"> <a itemprop="url" data-test="title-link" href="/articles/10.1186/s13040-024-00387-9" data-track="select_search_result" data-track-context="bmc search results page or article listing">Development, evaluation and comparison of machine learning algorithms for predicting in-hospital patient charges for congestive heart failure exacerbations, chronic obstructive pulmonary disease exacerbations and diabetic ketoacidosis</a> </h3> <p> Hospitalizations for exacerbations of congestive heart failure (CHF), chronic obstructive pulmonary disease (COPD) and diabetic ketoacidosis (DKA) are costly in the United States. The purpose of this study was... </p> <div class="c-listing__authors u-mb-0" data-test="ResultList-authors"> <span class="u-visually-hidden">Authors: </span> <span class="c-listing__authors-list">Monique Arnold, Lathan Liou and Mary Regina Boland</span> </div> <div data-test="teaser-citation"> <span class="u-visually-hidden">Citation:</span> <em data-test="journal-title">BioData Mining</em> 2024 <span>17</span>:35 </div> <div class="c-listing__metadata"> <span data-test="result-list"><span class="u-visually-hidden">Content type: </span>Research</span> <span data-test="published-on">Published on: <span itemprop="datePublished">12 September 2024</span></span> </div> <ul class="c-listing__view-options" data-test="article-list-search-results"> <li> <a href="/articles/10.1186/s13040-024-00387-9" data-track="select_search_result" data-track-category="Article List" data-track-action="Click Fulltext" data-test="fulltext-link" data-track-label="10.1186/s13040-024-00387-9" itemprop="citation"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> Full Text </span> </a> </li> <li> <a data-track="content_download" data-track-context="article listing link" data-track-type="article pdf download" data-track-category="Article List" data-track-action="Download PDF" data-track-label="10.1186/s13040-024-00387-9" data-test="pdf-link" href="/counter/pdf/10.1186/s13040-024-00387-9.pdf"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> PDF </span> </a> </li> </ul> </article> </li> <li class="c-listing__item u-keyline"> <article class="c-listing__content u-mb-16" itemscope itemtype="http://schema.org/ScholarlyArticle"> <h3 class="c-listing__title" itemprop="name"> <a itemprop="url" data-test="title-link" href="/articles/10.1186/s13040-024-00388-8" data-track="select_search_result" data-track-context="bmc search results page or article listing">Knowledge-slanted random forest method for high-dimensional data and small sample size with a feature selection application for gene expression data</a> </h3> <p> The use of prior knowledge in the machine learning framework has been considered a potential tool to handle the curse of dimensionality in genetic and genomics data. Although random forest (RF) represents a fl... </p> <div class="c-listing__authors u-mb-0" data-test="ResultList-authors"> <span class="u-visually-hidden">Authors: </span> <span class="c-listing__authors-list">Erika Cantor, Sandra Guauque-Olarte, Roberto León, Steren Chabert and Rodrigo Salas</span> </div> <div data-test="teaser-citation"> <span class="u-visually-hidden">Citation:</span> <em data-test="journal-title">BioData Mining</em> 2024 <span>17</span>:34 </div> <div class="c-listing__metadata"> <span data-test="result-list"><span class="u-visually-hidden">Content type: </span>Research</span> <span data-test="published-on">Published on: <span itemprop="datePublished">10 September 2024</span></span> </div> <ul class="c-listing__view-options" data-test="article-list-search-results"> <li> <a href="/articles/10.1186/s13040-024-00388-8" data-track="select_search_result" data-track-category="Article List" data-track-action="Click Fulltext" data-test="fulltext-link" data-track-label="10.1186/s13040-024-00388-8" itemprop="citation"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> Full Text </span> </a> </li> <li> <a data-track="content_download" data-track-context="article listing link" data-track-type="article pdf download" data-track-category="Article List" data-track-action="Download PDF" data-track-label="10.1186/s13040-024-00388-8" data-test="pdf-link" href="/counter/pdf/10.1186/s13040-024-00388-8.pdf"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> PDF </span> </a> </li> </ul> </article> </li> <li class="c-listing__item u-keyline"> <article class="c-listing__content u-mb-16" itemscope itemtype="http://schema.org/ScholarlyArticle"> <h3 class="c-listing__title" itemprop="name"> <a itemprop="url" data-test="title-link" href="/articles/10.1186/s13040-024-00379-9" data-track="select_search_result" data-track-context="bmc search results page or article listing">Private pathological assessment via machine learning and homomorphic encryption</a> </h3> <p> The objective of this research is to explore the applicability of machine learning and fully homomorphic encryption (FHE) in the private pathological assessment, with a focus on the inference phase of support ... </p> <div class="c-listing__authors u-mb-0" data-test="ResultList-authors"> <span class="u-visually-hidden">Authors: </span> <span class="c-listing__authors-list">Ahmad Al Badawi and Mohd Faizal Bin Yusof</span> </div> <div data-test="teaser-citation"> <span class="u-visually-hidden">Citation:</span> <em data-test="journal-title">BioData Mining</em> 2024 <span>17</span>:33 </div> <div class="c-listing__metadata"> <span data-test="result-list"><span class="u-visually-hidden">Content type: </span>Research</span> <span data-test="published-on">Published on: <span itemprop="datePublished">10 September 2024</span></span> </div> <ul class="c-listing__view-options" data-test="article-list-search-results"> <li> <a href="/articles/10.1186/s13040-024-00379-9" data-track="select_search_result" data-track-category="Article List" data-track-action="Click Fulltext" data-test="fulltext-link" data-track-label="10.1186/s13040-024-00379-9" itemprop="citation"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> Full Text </span> </a> </li> <li> <a data-track="content_download" data-track-context="article listing link" data-track-type="article pdf download" data-track-category="Article List" data-track-action="Download PDF" data-track-label="10.1186/s13040-024-00379-9" data-test="pdf-link" href="/counter/pdf/10.1186/s13040-024-00379-9.pdf"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> PDF </span> </a> </li> </ul> </article> </li> <li class="c-listing__item u-keyline"> <article class="c-listing__content u-mb-16" itemscope itemtype="http://schema.org/ScholarlyArticle"> <h3 class="c-listing__title" itemprop="name"> <a itemprop="url" data-test="title-link" href="/articles/10.1186/s13040-024-00383-z" data-track="select_search_result" data-track-context="bmc search results page or article listing">Enhanced labor pain monitoring using machine learning and ECG waveform analysis for uterine contraction-induced pain</a> </h3> <p> This study aims to develop an innovative approach for monitoring and assessing labor pain through ECG waveform analysis, utilizing machine learning techniques to monitor pain resulting from uterine contractions. </p> <div class="c-listing__authors u-mb-0" data-test="ResultList-authors"> <span class="u-visually-hidden">Authors: </span> <span class="c-listing__authors-list">Yuan-Chia Chu, Saint Shiou-Sheng Chen, Kuen-Bao Chen, Jui-Sheng Sun, Tzu-Kuei Shen and Li-Kuei Chen</span> </div> <div data-test="teaser-citation"> <span class="u-visually-hidden">Citation:</span> <em data-test="journal-title">BioData Mining</em> 2024 <span>17</span>:32 </div> <div class="c-listing__metadata"> <span data-test="result-list"><span class="u-visually-hidden">Content type: </span>Research</span> <span data-test="published-on">Published on: <span itemprop="datePublished">7 September 2024</span></span> </div> <ul class="c-listing__view-options" data-test="article-list-search-results"> <li> <a href="/articles/10.1186/s13040-024-00383-z" data-track="select_search_result" data-track-category="Article List" data-track-action="Click Fulltext" data-test="fulltext-link" data-track-label="10.1186/s13040-024-00383-z" itemprop="citation"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> Full Text </span> </a> </li> <li> <a data-track="content_download" data-track-context="article listing link" data-track-type="article pdf download" data-track-category="Article List" data-track-action="Download PDF" data-track-label="10.1186/s13040-024-00383-z" data-test="pdf-link" href="/counter/pdf/10.1186/s13040-024-00383-z.pdf"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> PDF </span> </a> </li> </ul> </article> </li> <li class="c-listing__item u-keyline"> <article class="c-listing__content u-mb-16" itemscope itemtype="http://schema.org/ScholarlyArticle"> <h3 class="c-listing__title" itemprop="name"> <a itemprop="url" data-test="title-link" href="/articles/10.1186/s13040-024-00385-x" data-track="select_search_result" data-track-context="bmc search results page or article listing">The goldmine of GWAS summary statistics: a systematic review of methods and tools</a> </h3> <p> Genome-wide association studies (GWAS) have revolutionized our understanding of the genetic architecture of complex traits and diseases. GWAS summary statistics have become essential tools for various genetic ... </p> <div class="c-listing__authors u-mb-0" data-test="ResultList-authors"> <span class="u-visually-hidden">Authors: </span> <span class="c-listing__authors-list">Panagiota I. Kontou and Pantelis G. Bagos</span> </div> <div data-test="teaser-citation"> <span class="u-visually-hidden">Citation:</span> <em data-test="journal-title">BioData Mining</em> 2024 <span>17</span>:31 </div> <div class="c-listing__metadata"> <span data-test="result-list"><span class="u-visually-hidden">Content type: </span>Research</span> <span data-test="published-on">Published on: <span itemprop="datePublished">5 September 2024</span></span> </div> <ul class="c-listing__view-options" data-test="article-list-search-results"> <li> <a href="/articles/10.1186/s13040-024-00385-x" data-track="select_search_result" data-track-category="Article List" data-track-action="Click Fulltext" data-test="fulltext-link" data-track-label="10.1186/s13040-024-00385-x" itemprop="citation"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> Full Text </span> </a> </li> <li> <a data-track="content_download" data-track-context="article listing link" data-track-type="article pdf download" data-track-category="Article List" data-track-action="Download PDF" data-track-label="10.1186/s13040-024-00385-x" data-test="pdf-link" href="/counter/pdf/10.1186/s13040-024-00385-x.pdf"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> PDF </span> </a> </li> </ul> </article> </li> <li class="c-listing__item u-keyline"> <article class="c-listing__content u-mb-16" itemscope itemtype="http://schema.org/ScholarlyArticle"> <h3 class="c-listing__title" itemprop="name"> <a itemprop="url" data-test="title-link" href="/articles/10.1186/s13040-024-00386-w" data-track="select_search_result" data-track-context="bmc search results page or article listing">QIGTD: identifying critical genes in the evolution of lung adenocarcinoma with tensor decomposition</a> </h3> <p> Identifying critical genes is important for understanding the pathogenesis of complex diseases. Traditional studies typically comparing the change of biomecules between normal and disease samples or detecting ... </p> <div class="c-listing__authors u-mb-0" data-test="ResultList-authors"> <span class="u-visually-hidden">Authors: </span> <span class="c-listing__authors-list">Bolin Chen, Jinlei Zhang, Ci Shao, Jun Bian, Ruiming Kang and Xuequn Shang</span> </div> <div data-test="teaser-citation"> <span class="u-visually-hidden">Citation:</span> <em data-test="journal-title">BioData Mining</em> 2024 <span>17</span>:30 </div> <div class="c-listing__metadata"> <span data-test="result-list"><span class="u-visually-hidden">Content type: </span>Research</span> <span data-test="published-on">Published on: <span itemprop="datePublished">4 September 2024</span></span> </div> <ul class="c-listing__view-options" data-test="article-list-search-results"> <li> <a href="/articles/10.1186/s13040-024-00386-w" data-track="select_search_result" data-track-category="Article List" data-track-action="Click Fulltext" data-test="fulltext-link" data-track-label="10.1186/s13040-024-00386-w" itemprop="citation"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> Full Text </span> </a> </li> <li> <a data-track="content_download" data-track-context="article listing link" data-track-type="article pdf download" data-track-category="Article List" data-track-action="Download PDF" data-track-label="10.1186/s13040-024-00386-w" data-test="pdf-link" href="/counter/pdf/10.1186/s13040-024-00386-w.pdf"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> PDF </span> </a> </li> </ul> </article> </li> <li class="c-listing__item u-keyline"> <article class="c-listing__content u-mb-16" itemscope itemtype="http://schema.org/ScholarlyArticle"> <h3 class="c-listing__title" itemprop="name"> <a itemprop="url" data-test="title-link" href="/articles/10.1186/s13040-024-00384-y" data-track="select_search_result" data-track-context="bmc search results page or article listing">Processing imbalanced medical data at the data level with assisted-reproduction data as an example</a> </h3> <p> Data imbalance is a pervasive issue in medical data mining, often leading to biased and unreliable predictive models. This study aims to address the urgent need for effective strategies to mitigate the impact ... </p> <div class="c-listing__authors u-mb-0" data-test="ResultList-authors"> <span class="u-visually-hidden">Authors: </span> <span class="c-listing__authors-list">Junliang Zhu, Shaowei Pu, Jiaji He, Dongchao Su, Weijie Cai, Xueying Xu and Hongbo Liu</span> </div> <div data-test="teaser-citation"> <span class="u-visually-hidden">Citation:</span> <em data-test="journal-title">BioData Mining</em> 2024 <span>17</span>:29 </div> <div class="c-listing__metadata"> <span data-test="result-list"><span class="u-visually-hidden">Content type: </span>Research</span> <span data-test="published-on">Published on: <span itemprop="datePublished">4 September 2024</span></span> </div> <ul class="c-listing__view-options" data-test="article-list-search-results"> <li> <a href="/articles/10.1186/s13040-024-00384-y" data-track="select_search_result" data-track-category="Article List" data-track-action="Click Fulltext" data-test="fulltext-link" data-track-label="10.1186/s13040-024-00384-y" itemprop="citation"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> Full Text </span> </a> </li> <li> <a data-track="content_download" data-track-context="article listing link" data-track-type="article pdf download" data-track-category="Article List" data-track-action="Download PDF" data-track-label="10.1186/s13040-024-00384-y" data-test="pdf-link" href="/counter/pdf/10.1186/s13040-024-00384-y.pdf"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> PDF </span> </a> </li> </ul> </article> </li> <li class="c-listing__item u-keyline"> <article class="c-listing__content u-mb-16" itemscope itemtype="http://schema.org/ScholarlyArticle"> <h3 class="c-listing__title" itemprop="name"> <a itemprop="url" data-test="title-link" href="/articles/10.1186/s13040-024-00380-2" data-track="select_search_result" data-track-context="bmc search results page or article listing">Seven quick tips for gene-focused computational pangenomic analysis</a> </h3> <p> Pangenomics is a relatively new scientific field which investigates the union of all the genomes of a clade. The word <em>pan</em> means <em>everything</em> in ancient Greek; the term pangenomics originally regarded genomes of bac... </p> <div class="c-listing__authors u-mb-0" data-test="ResultList-authors"> <span class="u-visually-hidden">Authors: </span> <span class="c-listing__authors-list">Vincenzo Bonnici and Davide Chicco</span> </div> <div data-test="teaser-citation"> <span class="u-visually-hidden">Citation:</span> <em data-test="journal-title">BioData Mining</em> 2024 <span>17</span>:28 </div> <div class="c-listing__metadata"> <span data-test="result-list"><span class="u-visually-hidden">Content type: </span>Brief Report</span> <span data-test="published-on">Published on: <span itemprop="datePublished">3 September 2024</span></span> </div> <ul class="c-listing__view-options" data-test="article-list-search-results"> <li> <a href="/articles/10.1186/s13040-024-00380-2" data-track="select_search_result" data-track-category="Article List" data-track-action="Click Fulltext" data-test="fulltext-link" data-track-label="10.1186/s13040-024-00380-2" itemprop="citation"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> Full Text </span> </a> </li> <li> <a data-track="content_download" data-track-context="article listing link" data-track-type="article pdf download" data-track-category="Article List" data-track-action="Download PDF" data-track-label="10.1186/s13040-024-00380-2" data-test="pdf-link" href="/counter/pdf/10.1186/s13040-024-00380-2.pdf"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> PDF </span> </a> </li> </ul> </article> </li> <li class="c-listing__item u-keyline"> <article class="c-listing__content u-mb-16" itemscope itemtype="http://schema.org/ScholarlyArticle"> <h3 class="c-listing__title" itemprop="name"> <a itemprop="url" data-test="title-link" href="/articles/10.1186/s13040-024-00381-1" data-track="select_search_result" data-track-context="bmc search results page or article listing">Deep learning for automatic calcium detection in echocardiography</a> </h3> <p> Cardiovascular diseases are the main cause of death in the world and cardiovascular imaging techniques are the mainstay of noninvasive diagnosis. Aortic stenosis is a lethal cardiac disease preceded by aortic ... </p> <div class="c-listing__authors u-mb-0" data-test="ResultList-authors"> <span class="u-visually-hidden">Authors: </span> <span class="c-listing__authors-list">Luís B. Elvas, Sara Gomes, João C. Ferreira, Luís Brás Rosário and Tomás Brandão</span> </div> <div data-test="teaser-citation"> <span class="u-visually-hidden">Citation:</span> <em data-test="journal-title">BioData Mining</em> 2024 <span>17</span>:27 </div> <div class="c-listing__metadata"> <span data-test="result-list"><span class="u-visually-hidden">Content type: </span>Research</span> <span data-test="published-on">Published on: <span itemprop="datePublished">28 August 2024</span></span> </div> <ul class="c-listing__view-options" data-test="article-list-search-results"> <li> <a href="/articles/10.1186/s13040-024-00381-1" data-track="select_search_result" data-track-category="Article List" data-track-action="Click Fulltext" data-test="fulltext-link" data-track-label="10.1186/s13040-024-00381-1" itemprop="citation"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> Full Text </span> </a> </li> <li> <a data-track="content_download" data-track-context="article listing link" data-track-type="article pdf download" data-track-category="Article List" data-track-action="Download PDF" data-track-label="10.1186/s13040-024-00381-1" data-test="pdf-link" href="/counter/pdf/10.1186/s13040-024-00381-1.pdf"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> PDF </span> </a> </li> </ul> </article> </li> <li class="c-listing__item u-keyline"> <article class="c-listing__content u-mb-16" itemscope itemtype="http://schema.org/ScholarlyArticle"> <h3 class="c-listing__title" itemprop="name"> <a itemprop="url" data-test="title-link" href="/articles/10.1186/s13040-024-00382-0" data-track="select_search_result" data-track-context="bmc search results page or article listing">Integrating transcriptomics and proteomics to analyze the immune microenvironment of cytomegalovirus associated ulcerative colitis and identify relevant biomarkers</a> </h3> <p> In recent years, significant morbidity and mortality in patients with severe inflammatory bowel disease (IBD) and cytomegalovirus (CMV) have drawn considerable attention to the status of CMV infection in the i... </p> <div class="c-listing__authors u-mb-0" data-test="ResultList-authors"> <span class="u-visually-hidden">Authors: </span> <span class="c-listing__authors-list">Yang Chen, Qingqing Zheng, Hui Wang, Peiren Tang, Li Deng, Pu Li, Huan Li, Jianhong Hou, Jie Li, Li Wang and Jun Peng</span> </div> <div data-test="teaser-citation"> <span class="u-visually-hidden">Citation:</span> <em data-test="journal-title">BioData Mining</em> 2024 <span>17</span>:26 </div> <div class="c-listing__metadata"> <span data-test="result-list"><span class="u-visually-hidden">Content type: </span>Research</span> <span data-test="published-on">Published on: <span itemprop="datePublished">27 August 2024</span></span> </div> <ul class="c-listing__view-options" data-test="article-list-search-results"> <li> <a href="/articles/10.1186/s13040-024-00382-0" data-track="select_search_result" data-track-category="Article List" data-track-action="Click Fulltext" data-test="fulltext-link" data-track-label="10.1186/s13040-024-00382-0" itemprop="citation"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> Full Text </span> </a> </li> <li> <a data-track="content_download" data-track-context="article listing link" data-track-type="article pdf download" data-track-category="Article List" data-track-action="Download PDF" data-track-label="10.1186/s13040-024-00382-0" data-test="pdf-link" href="/counter/pdf/10.1186/s13040-024-00382-0.pdf"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> PDF </span> </a> </li> </ul> </article> </li> <li class="c-listing__item u-keyline"> <article class="c-listing__content u-mb-16" itemscope itemtype="http://schema.org/ScholarlyArticle"> <h3 class="c-listing__title" itemprop="name"> <a itemprop="url" data-test="title-link" href="/articles/10.1186/s13040-024-00378-w" data-track="select_search_result" data-track-context="bmc search results page or article listing">Understanding predictions of drug profiles using explainable machine learning models</a> </h3> <p> The analysis of absorption, distribution, metabolism, and excretion (ADME) molecular properties is of relevance to drug design, as they directly influence the drug’s effectiveness at its target location. This ... </p> <div class="c-listing__authors u-mb-0" data-test="ResultList-authors"> <span class="u-visually-hidden">Authors: </span> <span class="c-listing__authors-list">Caroline König and Alfredo Vellido</span> </div> <div data-test="teaser-citation"> <span class="u-visually-hidden">Citation:</span> <em data-test="journal-title">BioData Mining</em> 2024 <span>17</span>:25 </div> <div class="c-listing__metadata"> <span data-test="result-list"><span class="u-visually-hidden">Content type: </span>Research</span> <span data-test="published-on">Published on: <span itemprop="datePublished">1 August 2024</span></span> </div> <ul class="c-listing__view-options" data-test="article-list-search-results"> <li> <a href="/articles/10.1186/s13040-024-00378-w" data-track="select_search_result" data-track-category="Article List" data-track-action="Click Fulltext" data-test="fulltext-link" data-track-label="10.1186/s13040-024-00378-w" itemprop="citation"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> Full Text </span> </a> </li> <li> <a data-track="content_download" data-track-context="article listing link" data-track-type="article pdf download" data-track-category="Article List" data-track-action="Download PDF" data-track-label="10.1186/s13040-024-00378-w" data-test="pdf-link" href="/counter/pdf/10.1186/s13040-024-00378-w.pdf"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> PDF </span> </a> </li> </ul> </article> </li> <li class="c-listing__item u-keyline"> <article class="c-listing__content u-mb-16" itemscope itemtype="http://schema.org/ScholarlyArticle"> <h3 class="c-listing__title" itemprop="name"> <a itemprop="url" data-test="title-link" href="/articles/10.1186/s13040-024-00375-z" data-track="select_search_result" data-track-context="bmc search results page or article listing">Modelling the nicotine pharmacokinetic profile for e-cigarettes using real time monitoring of consumers’ physiological measurements and mouth level exposure</a> </h3> <p> Pharmacokinetic (PK) studies can provide essential information on abuse liability of nicotine and tobacco products but are intrusive and must be conducted in a clinical environment. The objective of the study ... </p> <div class="c-listing__authors u-mb-0" data-test="ResultList-authors"> <span class="u-visually-hidden">Authors: </span> <span class="c-listing__authors-list">Krishna Prasad, Allen Griffiths, Kavya Agrawal, Michael McEwan, Flavio Macci, Marco Ghisoni, Matthew Stopher, Matthew Napleton, Joel Strickland, David Keating, Thomas Whitehead, Gareth Conduit, Stacey Murray and Lauren Edward</span> </div> <div data-test="teaser-citation"> <span class="u-visually-hidden">Citation:</span> <em data-test="journal-title">BioData Mining</em> 2024 <span>17</span>:24 </div> <div class="c-listing__metadata"> <span data-test="result-list"><span class="u-visually-hidden">Content type: </span>Research</span> <span data-test="published-on">Published on: <span itemprop="datePublished">17 July 2024</span></span> </div> <ul class="c-listing__view-options" data-test="article-list-search-results"> <li> <a href="/articles/10.1186/s13040-024-00375-z" data-track="select_search_result" data-track-category="Article List" data-track-action="Click Fulltext" data-test="fulltext-link" data-track-label="10.1186/s13040-024-00375-z" itemprop="citation"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> Full Text </span> </a> </li> <li> <a data-track="content_download" data-track-context="article listing link" data-track-type="article pdf download" data-track-category="Article List" data-track-action="Download PDF" data-track-label="10.1186/s13040-024-00375-z" data-test="pdf-link" href="/counter/pdf/10.1186/s13040-024-00375-z.pdf"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> PDF </span> </a> </li> </ul> </article> </li> <li class="c-listing__item u-keyline"> <article class="c-listing__content u-mb-16" itemscope itemtype="http://schema.org/ScholarlyArticle"> <h3 class="c-listing__title" itemprop="name"> <a itemprop="url" data-test="title-link" href="/articles/10.1186/s13040-024-00376-y" data-track="select_search_result" data-track-context="bmc search results page or article listing">Construction and application of medication reminder system: intelligent generation of universal medication schedule</a> </h3> <p> Patients with chronic conditions need multiple medications daily to manage their condition. However, most patients have poor compliance, which affects the effectiveness of treatment. To address these challenge... </p> <div class="c-listing__authors u-mb-0" data-test="ResultList-authors"> <span class="u-visually-hidden">Authors: </span> <span class="c-listing__authors-list">Hangxing Huang, Lu Zhang, Yongyu Yang, Ling Huang, Xikui Lu, Jingyang Li, Huimin Yu, Shuqiao Cheng and Jian Xiao</span> </div> <div data-test="teaser-citation"> <span class="u-visually-hidden">Citation:</span> <em data-test="journal-title">BioData Mining</em> 2024 <span>17</span>:23 </div> <div class="c-listing__metadata"> <span data-test="result-list"><span class="u-visually-hidden">Content type: </span>Research</span> <span data-test="published-on">Published on: <span itemprop="datePublished">15 July 2024</span></span> </div> <ul class="c-listing__view-options" data-test="article-list-search-results"> <li> <a href="/articles/10.1186/s13040-024-00376-y" data-track="select_search_result" data-track-category="Article List" data-track-action="Click Fulltext" data-test="fulltext-link" data-track-label="10.1186/s13040-024-00376-y" itemprop="citation"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> Full Text </span> </a> </li> <li> <a data-track="content_download" data-track-context="article listing link" data-track-type="article pdf download" data-track-category="Article List" data-track-action="Download PDF" data-track-label="10.1186/s13040-024-00376-y" data-test="pdf-link" href="/counter/pdf/10.1186/s13040-024-00376-y.pdf"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> PDF </span> </a> </li> </ul> </article> </li> <li class="c-listing__item u-keyline"> <article class="c-listing__content u-mb-16" itemscope itemtype="http://schema.org/ScholarlyArticle"> <h3 class="c-listing__title" itemprop="name"> <a itemprop="url" data-test="title-link" href="/articles/10.1186/s13040-024-00373-1" data-track="select_search_result" data-track-context="bmc search results page or article listing">Building RadiologyNET: an unsupervised approach to annotating a large-scale multimodal medical database</a> </h3> <p> The use of machine learning in medical diagnosis and treatment has grown significantly in recent years with the development of computer-aided diagnosis systems, often based on annotated medical radiology image... </p> <div class="c-listing__authors u-mb-0" data-test="ResultList-authors"> <span class="u-visually-hidden">Authors: </span> <span class="c-listing__authors-list">Mateja Napravnik, Franko Hržić, Sebastian Tschauner and Ivan Štajduhar</span> </div> <div data-test="teaser-citation"> <span class="u-visually-hidden">Citation:</span> <em data-test="journal-title">BioData Mining</em> 2024 <span>17</span>:22 </div> <div class="c-listing__metadata"> <span data-test="result-list"><span class="u-visually-hidden">Content type: </span>Research</span> <span data-test="published-on">Published on: <span itemprop="datePublished">12 July 2024</span></span> </div> <ul class="c-listing__view-options" data-test="article-list-search-results"> <li> <a href="/articles/10.1186/s13040-024-00373-1" data-track="select_search_result" data-track-category="Article List" data-track-action="Click Fulltext" data-test="fulltext-link" data-track-label="10.1186/s13040-024-00373-1" itemprop="citation"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> Full Text </span> </a> </li> <li> <a data-track="content_download" data-track-context="article listing link" data-track-type="article pdf download" data-track-category="Article List" data-track-action="Download PDF" data-track-label="10.1186/s13040-024-00373-1" data-test="pdf-link" href="/counter/pdf/10.1186/s13040-024-00373-1.pdf"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> PDF </span> </a> </li> </ul> </article> </li> <li class="c-listing__item u-keyline"> <article class="c-listing__content u-mb-16" itemscope itemtype="http://schema.org/ScholarlyArticle"> <h3 class="c-listing__title" itemprop="name"> <a itemprop="url" data-test="title-link" href="/articles/10.1186/s13040-024-00374-0" data-track="select_search_result" data-track-context="bmc search results page or article listing">Transcriptome- and DNA methylation-based cell-type deconvolutions produce similar estimates of differential gene expression and differential methylation</a> </h3> <p> Changing cell-type proportions can confound studies of differential gene expression or DNA methylation (DNAm) from peripheral blood mononuclear cells (PBMCs). We examined how cell-type proportions derived from... </p> <div class="c-listing__authors u-mb-0" data-test="ResultList-authors"> <span class="u-visually-hidden">Authors: </span> <span class="c-listing__authors-list">Emily R. Hannon, Carmen J. Marsit, Arlene E. Dent, Paula Embury, Sidney Ogolla, David Midem, Scott M. Williams and James W. Kazura</span> </div> <div data-test="teaser-citation"> <span class="u-visually-hidden">Citation:</span> <em data-test="journal-title">BioData Mining</em> 2024 <span>17</span>:21 </div> <div class="c-listing__metadata"> <span data-test="result-list"><span class="u-visually-hidden">Content type: </span>Research</span> <span data-test="published-on">Published on: <span itemprop="datePublished">11 July 2024</span></span> </div> <ul class="c-listing__view-options" data-test="article-list-search-results"> <li> <a href="/articles/10.1186/s13040-024-00374-0" data-track="select_search_result" data-track-category="Article List" data-track-action="Click Fulltext" data-test="fulltext-link" data-track-label="10.1186/s13040-024-00374-0" itemprop="citation"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> Full Text </span> </a> </li> <li> <a data-track="content_download" data-track-context="article listing link" data-track-type="article pdf download" data-track-category="Article List" data-track-action="Download PDF" data-track-label="10.1186/s13040-024-00374-0" data-test="pdf-link" href="/counter/pdf/10.1186/s13040-024-00374-0.pdf"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> PDF </span> </a> </li> </ul> </article> </li> <li class="c-listing__item u-keyline"> <article class="c-listing__content u-mb-16" itemscope itemtype="http://schema.org/ScholarlyArticle"> <h3 class="c-listing__title" itemprop="name"> <a itemprop="url" data-test="title-link" href="/articles/10.1186/s13040-024-00369-x" data-track="select_search_result" data-track-context="bmc search results page or article listing">Identification of immune-associated biomarkers of diabetes nephropathy tubulointerstitial injury based on machine learning: a bioinformatics multi-chip integrated analysis</a> </h3> <p> Diabetic nephropathy (DN) is a major microvascular complication of diabetes and has become the leading cause of end-stage renal disease worldwide. A considerable number of DN patients have experienced irrevers... </p> <div class="c-listing__authors u-mb-0" data-test="ResultList-authors"> <span class="u-visually-hidden">Authors: </span> <span class="c-listing__authors-list">Lin Wang, Jiaming Su, Zhongjie Liu, Shaowei Ding, Yaotan Li, Baoluo Hou, Yuxin Hu, Zhaoxi Dong, Jingyi Tang, Hongfang Liu and Weijing Liu</span> </div> <div data-test="teaser-citation"> <span class="u-visually-hidden">Citation:</span> <em data-test="journal-title">BioData Mining</em> 2024 <span>17</span>:20 </div> <div class="c-listing__metadata"> <span data-test="result-list"><span class="u-visually-hidden">Content type: </span>Research</span> <span data-test="published-on">Published on: <span itemprop="datePublished">1 July 2024</span></span> </div> <ul class="c-listing__view-options" data-test="article-list-search-results"> <li> <a href="/articles/10.1186/s13040-024-00369-x" data-track="select_search_result" data-track-category="Article List" data-track-action="Click Fulltext" data-test="fulltext-link" data-track-label="10.1186/s13040-024-00369-x" itemprop="citation"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> Full Text </span> </a> </li> <li> <a data-track="content_download" data-track-context="article listing link" data-track-type="article pdf download" data-track-category="Article List" data-track-action="Download PDF" data-track-label="10.1186/s13040-024-00369-x" data-test="pdf-link" href="/counter/pdf/10.1186/s13040-024-00369-x.pdf"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> PDF </span> </a> </li> </ul> </article> </li> <li class="c-listing__item u-keyline"> <article class="c-listing__content u-mb-16" itemscope itemtype="http://schema.org/ScholarlyArticle"> <h3 class="c-listing__title" itemprop="name"> <a itemprop="url" data-test="title-link" href="/articles/10.1186/s13040-024-00372-2" data-track="select_search_result" data-track-context="bmc search results page or article listing">Electronic medical records imputation by temporal Generative Adversarial Network</a> </h3> <p> The loss of electronic medical records has seriously affected the practical application of biomedical data. Therefore, it is a meaningful research effort to effectively fill these lost data. Currently, state-o... </p> <div class="c-listing__authors u-mb-0" data-test="ResultList-authors"> <span class="u-visually-hidden">Authors: </span> <span class="c-listing__authors-list">Yunfei Yin, Zheng Yuan, Islam Md Tanvir and Xianjian Bao</span> </div> <div data-test="teaser-citation"> <span class="u-visually-hidden">Citation:</span> <em data-test="journal-title">BioData Mining</em> 2024 <span>17</span>:19 </div> <div class="c-listing__metadata"> <span data-test="result-list"><span class="u-visually-hidden">Content type: </span>Research</span> <span data-test="published-on">Published on: <span itemprop="datePublished">26 June 2024</span></span> </div> <ul class="c-listing__view-options" data-test="article-list-search-results"> <li> <a href="/articles/10.1186/s13040-024-00372-2" data-track="select_search_result" data-track-category="Article List" data-track-action="Click Fulltext" data-test="fulltext-link" data-track-label="10.1186/s13040-024-00372-2" itemprop="citation"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> Full Text </span> </a> </li> <li> <a data-track="content_download" data-track-context="article listing link" data-track-type="article pdf download" data-track-category="Article List" data-track-action="Download PDF" data-track-label="10.1186/s13040-024-00372-2" data-test="pdf-link" href="/counter/pdf/10.1186/s13040-024-00372-2.pdf"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> PDF </span> </a> </li> </ul> </article> </li> <li class="c-listing__item u-keyline"> <article class="c-listing__content u-mb-16" itemscope itemtype="http://schema.org/ScholarlyArticle"> <h3 class="c-listing__title" itemprop="name"> <a itemprop="url" data-test="title-link" href="/articles/10.1186/s13040-024-00370-4" data-track="select_search_result" data-track-context="bmc search results page or article listing">Saliency-driven explainable deep learning in medical imaging: bridging visual explainability and statistical quantitative analysis</a> </h3> <p> Deep learning shows great promise for medical image analysis but often lacks explainability, hindering its adoption in healthcare. Attribution techniques that explain model reasoning can potentially increase t... </p> <div class="c-listing__authors u-mb-0" data-test="ResultList-authors"> <span class="u-visually-hidden">Authors: </span> <span class="c-listing__authors-list">Yusuf Brima and Marcellin Atemkeng</span> </div> <div data-test="teaser-citation"> <span class="u-visually-hidden">Citation:</span> <em data-test="journal-title">BioData Mining</em> 2024 <span>17</span>:18 </div> <div class="c-listing__metadata"> <span data-test="result-list"><span class="u-visually-hidden">Content type: </span>Research</span> <span data-test="published-on">Published on: <span itemprop="datePublished">22 June 2024</span></span> </div> <ul class="c-listing__view-options" data-test="article-list-search-results"> <li> <a href="/articles/10.1186/s13040-024-00370-4" data-track="select_search_result" data-track-category="Article List" data-track-action="Click Fulltext" data-test="fulltext-link" data-track-label="10.1186/s13040-024-00370-4" itemprop="citation"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> Full Text </span> </a> </li> <li> <a data-track="content_download" data-track-context="article listing link" data-track-type="article pdf download" data-track-category="Article List" data-track-action="Download PDF" data-track-label="10.1186/s13040-024-00370-4" data-test="pdf-link" href="/counter/pdf/10.1186/s13040-024-00370-4.pdf"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> PDF </span> </a> </li> </ul> </article> </li> <li class="c-listing__item u-keyline"> <article class="c-listing__content u-mb-16" itemscope itemtype="http://schema.org/ScholarlyArticle"> <h3 class="c-listing__title" itemprop="name"> <a itemprop="url" data-test="title-link" href="/articles/10.1186/s13040-024-00367-z" data-track="select_search_result" data-track-context="bmc search results page or article listing">Minimization of occurrence of retained surgical items using machine learning and deep learning techniques: a review</a> </h3> <p> Retained surgical items (RSIs) pose significant risks to patients and healthcare professionals, prompting extensive efforts to reduce their incidence. RSIs are objects inadvertently left within patients’ bodie... </p> <div class="c-listing__authors u-mb-0" data-test="ResultList-authors"> <span class="u-visually-hidden">Authors: </span> <span class="c-listing__authors-list">Mohammed Abo-Zahhad, Ahmed H. Abd El-Malek, Mohammed S. Sayed and Susan Njeri Gitau</span> </div> <div data-test="teaser-citation"> <span class="u-visually-hidden">Citation:</span> <em data-test="journal-title">BioData Mining</em> 2024 <span>17</span>:17 </div> <div class="c-listing__metadata"> <span data-test="result-list"><span class="u-visually-hidden">Content type: </span>Review</span> <span data-test="published-on">Published on: <span itemprop="datePublished">18 June 2024</span></span> </div> <ul class="c-listing__view-options" data-test="article-list-search-results"> <li> <a href="/articles/10.1186/s13040-024-00367-z" data-track="select_search_result" data-track-category="Article List" data-track-action="Click Fulltext" data-test="fulltext-link" data-track-label="10.1186/s13040-024-00367-z" itemprop="citation"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> Full Text </span> </a> </li> <li> <a data-track="content_download" data-track-context="article listing link" data-track-type="article pdf download" data-track-category="Article List" data-track-action="Download PDF" data-track-label="10.1186/s13040-024-00367-z" data-test="pdf-link" href="/counter/pdf/10.1186/s13040-024-00367-z.pdf"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> PDF </span> </a> </li> </ul> </article> </li> <li class="c-listing__item u-keyline"> <article class="c-listing__content u-mb-16" itemscope itemtype="http://schema.org/ScholarlyArticle"> <h3 class="c-listing__title" itemprop="name"> <a itemprop="url" data-test="title-link" href="/articles/10.1186/s13040-024-00371-3" data-track="select_search_result" data-track-context="bmc search results page or article listing">Using GPT-4 to write a scientific review article: a pilot evaluation study</a> </h3> <p> GPT-4, as the most advanced version of OpenAI’s large language models, has attracted widespread attention, rapidly becoming an indispensable AI tool across various areas. This includes its exploration by scien... </p> <div class="c-listing__authors u-mb-0" data-test="ResultList-authors"> <span class="u-visually-hidden">Authors: </span> <span class="c-listing__authors-list">Zhiping Paul Wang, Priyanka Bhandary, Yizhou Wang and Jason H. Moore</span> </div> <div data-test="teaser-citation"> <span class="u-visually-hidden">Citation:</span> <em data-test="journal-title">BioData Mining</em> 2024 <span>17</span>:16 </div> <div class="c-listing__metadata"> <span data-test="result-list"><span class="u-visually-hidden">Content type: </span>Research</span> <span data-test="published-on">Published on: <span itemprop="datePublished">18 June 2024</span></span> </div> <ul class="c-listing__view-options" data-test="article-list-search-results"> <li> <a href="/articles/10.1186/s13040-024-00371-3" data-track="select_search_result" data-track-category="Article List" data-track-action="Click Fulltext" data-test="fulltext-link" data-track-label="10.1186/s13040-024-00371-3" itemprop="citation"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> Full Text </span> </a> </li> <li> <a data-track="content_download" data-track-context="article listing link" data-track-type="article pdf download" data-track-category="Article List" data-track-action="Download PDF" data-track-label="10.1186/s13040-024-00371-3" data-test="pdf-link" href="/counter/pdf/10.1186/s13040-024-00371-3.pdf"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> PDF </span> </a> </li> </ul> </article> </li> <li class="c-listing__item u-keyline"> <article class="c-listing__content u-mb-16" itemscope itemtype="http://schema.org/ScholarlyArticle"> <h3 class="c-listing__title" itemprop="name"> <a itemprop="url" data-test="title-link" href="/articles/10.1186/s13040-024-00368-y" data-track="select_search_result" data-track-context="bmc search results page or article listing">Unveiling wearables: exploring the global landscape of biometric applications and vital signs and behavioral impact</a> </h3> <p> The development of neuroscientific techniques enabling the recording of brain and peripheral nervous system activity has fueled research in cognitive science. Recent technological advancements offer new possib... </p> <div class="c-listing__authors u-mb-0" data-test="ResultList-authors"> <span class="u-visually-hidden">Authors: </span> <span class="c-listing__authors-list">Carolina Del-Valle-Soto, Ramon A. Briseño, Leonardo J. Valdivia and Juan Arturo Nolazco-Flores</span> </div> <div data-test="teaser-citation"> <span class="u-visually-hidden">Citation:</span> <em data-test="journal-title">BioData Mining</em> 2024 <span>17</span>:15 </div> <div class="c-listing__metadata"> <span data-test="result-list"><span class="u-visually-hidden">Content type: </span>Research</span> <span data-test="published-on">Published on: <span itemprop="datePublished">11 June 2024</span></span> </div> <ul class="c-listing__view-options" data-test="article-list-search-results"> <li> <a href="/articles/10.1186/s13040-024-00368-y" data-track="select_search_result" data-track-category="Article List" data-track-action="Click Fulltext" data-test="fulltext-link" data-track-label="10.1186/s13040-024-00368-y" itemprop="citation"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> Full Text </span> </a> </li> <li> <a data-track="content_download" data-track-context="article listing link" data-track-type="article pdf download" data-track-category="Article List" data-track-action="Download PDF" data-track-label="10.1186/s13040-024-00368-y" data-test="pdf-link" href="/counter/pdf/10.1186/s13040-024-00368-y.pdf"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> PDF </span> </a> </li> </ul> </article> </li> <li class="c-listing__item u-keyline"> <article class="c-listing__content u-mb-16" itemscope itemtype="http://schema.org/ScholarlyArticle"> <h3 class="c-listing__title" itemprop="name"> <a itemprop="url" data-test="title-link" href="/articles/10.1186/s13040-024-00366-0" data-track="select_search_result" data-track-context="bmc search results page or article listing">A machine learning approach using conditional normalizing flow to address extreme class imbalance problems in personal health records</a> </h3> <p> Supervised machine learning models have been widely used to predict and get insight into diseases by classifying patients based on personal health records. However, a class imbalance is an obstacle that disrup... </p> <div class="c-listing__authors u-mb-0" data-test="ResultList-authors"> <span class="u-visually-hidden">Authors: </span> <span class="c-listing__authors-list">Yeongmin Kim, Wongyung Choi, Woojeong Choi, Grace Ko, Seonggyun Han, Hwan-Cheol Kim, Dokyoon Kim, Dong-gi Lee, Dong Wook Shin and Younghee Lee</span> </div> <div data-test="teaser-citation"> <span class="u-visually-hidden">Citation:</span> <em data-test="journal-title">BioData Mining</em> 2024 <span>17</span>:14 </div> <div class="c-listing__metadata"> <span data-test="result-list"><span class="u-visually-hidden">Content type: </span>Research</span> <span data-test="published-on">Published on: <span itemprop="datePublished">25 May 2024</span></span> </div> <ul class="c-listing__view-options" data-test="article-list-search-results"> <li> <a href="/articles/10.1186/s13040-024-00366-0" data-track="select_search_result" data-track-category="Article List" data-track-action="Click Fulltext" data-test="fulltext-link" data-track-label="10.1186/s13040-024-00366-0" itemprop="citation"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> Full Text </span> </a> </li> <li> <a data-track="content_download" data-track-context="article listing link" data-track-type="article pdf download" data-track-category="Article List" data-track-action="Download PDF" data-track-label="10.1186/s13040-024-00366-0" data-test="pdf-link" href="/counter/pdf/10.1186/s13040-024-00366-0.pdf"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> PDF </span> </a> </li> </ul> </article> </li> <li class="c-listing__item u-keyline"> <article class="c-listing__content u-mb-16" itemscope itemtype="http://schema.org/ScholarlyArticle"> <h3 class="c-listing__title" itemprop="name"> <a itemprop="url" data-test="title-link" href="/articles/10.1186/s13040-024-00365-1" data-track="select_search_result" data-track-context="bmc search results page or article listing">The biomedical knowledge graph of symptom phenotype in coronary artery plaque: machine learning-based analysis of real-world clinical data</a> </h3> <p> A knowledge graph can effectively showcase the essential characteristics of data and is increasingly emerging as a significant means of integrating information in the field of artificial intelligence. Coronary... </p> <div class="c-listing__authors u-mb-0" data-test="ResultList-authors"> <span class="u-visually-hidden">Authors: </span> <span class="c-listing__authors-list">Jia-Ming Huan, Xiao-Jie Wang, Yuan Li, Shi-Jun Zhang, Yuan-Long Hu and Yun-Lun Li</span> </div> <div data-test="teaser-citation"> <span class="u-visually-hidden">Citation:</span> <em data-test="journal-title">BioData Mining</em> 2024 <span>17</span>:13 </div> <div class="c-listing__metadata"> <span data-test="result-list"><span class="u-visually-hidden">Content type: </span>Research</span> <span data-test="published-on">Published on: <span itemprop="datePublished">21 May 2024</span></span> </div> <ul class="c-listing__view-options" data-test="article-list-search-results"> <li> <a href="/articles/10.1186/s13040-024-00365-1" data-track="select_search_result" data-track-category="Article List" data-track-action="Click Fulltext" data-test="fulltext-link" data-track-label="10.1186/s13040-024-00365-1" itemprop="citation"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> Full Text </span> </a> </li> <li> <a data-track="content_download" data-track-context="article listing link" data-track-type="article pdf download" data-track-category="Article List" data-track-action="Download PDF" data-track-label="10.1186/s13040-024-00365-1" data-test="pdf-link" href="/counter/pdf/10.1186/s13040-024-00365-1.pdf"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> PDF </span> </a> </li> </ul> </article> </li> <li class="c-listing__item u-keyline"> <article class="c-listing__content u-mb-16" itemscope itemtype="http://schema.org/ScholarlyArticle"> <h3 class="c-listing__title" itemprop="name"> <a itemprop="url" data-test="title-link" href="/articles/10.1186/s13040-024-00363-3" data-track="select_search_result" data-track-context="bmc search results page or article listing">Machine-learning-based models to predict cardiovascular risk using oculomics and clinic variables in KNHANES</a> </h3> <p> Recent researches have found a strong correlation between the triglyceride-glucose (TyG) index or the atherogenic index of plasma (AIP) and cardiovascular disease (CVD) risk. However, there is a lack of resear... </p> <div class="c-listing__authors u-mb-0" data-test="ResultList-authors"> <span class="u-visually-hidden">Authors: </span> <span class="c-listing__authors-list">Yuqi Zhang, Sijin Li, Weijie Wu, Yanqing Zhao, Jintao Han, Chao Tong, Niansang Luo and Kun Zhang</span> </div> <div data-test="teaser-citation"> <span class="u-visually-hidden">Citation:</span> <em data-test="journal-title">BioData Mining</em> 2024 <span>17</span>:12 </div> <div class="c-listing__metadata"> <span data-test="result-list"><span class="u-visually-hidden">Content type: </span>Research</span> <span data-test="published-on">Published on: <span itemprop="datePublished">22 April 2024</span></span> </div> <ul class="c-listing__view-options" data-test="article-list-search-results"> <li> <a href="/articles/10.1186/s13040-024-00363-3" data-track="select_search_result" data-track-category="Article List" data-track-action="Click Fulltext" data-test="fulltext-link" data-track-label="10.1186/s13040-024-00363-3" itemprop="citation"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> Full Text </span> </a> </li> <li> <a data-track="content_download" data-track-context="article listing link" data-track-type="article pdf download" data-track-category="Article List" data-track-action="Download PDF" data-track-label="10.1186/s13040-024-00363-3" data-test="pdf-link" href="/counter/pdf/10.1186/s13040-024-00363-3.pdf"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> PDF </span> </a> </li> </ul> </article> </li> <li class="c-listing__item u-keyline"> <article class="c-listing__content u-mb-16" itemscope itemtype="http://schema.org/ScholarlyArticle"> <h3 class="c-listing__title" itemprop="name"> <a itemprop="url" data-test="title-link" href="/articles/10.1186/s13040-024-00362-4" data-track="select_search_result" data-track-context="bmc search results page or article listing">Decoding dynamic miRNA:ceRNA interactions unveils therapeutic insights and targets across predominant cancer landscapes</a> </h3> <p> Competing endogenous RNAs play key roles in cellular molecular mechanisms through cross-talk in post-transcriptional interactions. Studies on ceRNA cross-talk, which is particularly dependent on the abundance ... </p> <div class="c-listing__authors u-mb-0" data-test="ResultList-authors"> <span class="u-visually-hidden">Authors: </span> <span class="c-listing__authors-list">Selcen Ari Yuka and Alper Yilmaz</span> </div> <div data-test="teaser-citation"> <span class="u-visually-hidden">Citation:</span> <em data-test="journal-title">BioData Mining</em> 2024 <span>17</span>:11 </div> <div class="c-listing__metadata"> <span data-test="result-list"><span class="u-visually-hidden">Content type: </span>Research</span> <span data-test="published-on">Published on: <span itemprop="datePublished">17 April 2024</span></span> </div> <ul class="c-listing__view-options" data-test="article-list-search-results"> <li> <a href="/articles/10.1186/s13040-024-00362-4" data-track="select_search_result" data-track-category="Article List" data-track-action="Click Fulltext" data-test="fulltext-link" data-track-label="10.1186/s13040-024-00362-4" itemprop="citation"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> Full Text </span> </a> </li> <li> <a data-track="content_download" data-track-context="article listing link" data-track-type="article pdf download" data-track-category="Article List" data-track-action="Download PDF" data-track-label="10.1186/s13040-024-00362-4" data-test="pdf-link" href="/counter/pdf/10.1186/s13040-024-00362-4.pdf"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> PDF </span> </a> </li> </ul> </article> </li> <li class="c-listing__item u-keyline"> <article class="c-listing__content u-mb-16" itemscope itemtype="http://schema.org/ScholarlyArticle"> <h3 class="c-listing__title" itemprop="name"> <a itemprop="url" data-test="title-link" href="/articles/10.1186/s13040-024-00361-5" data-track="select_search_result" data-track-context="bmc search results page or article listing">Evaluation of network-guided random forest for disease gene discovery</a> </h3> <p> Gene network information is believed to be beneficial for disease module and pathway identification, but has not been explicitly utilized in the standard random forest (RF) algorithm for gene expression data a... </p> <div class="c-listing__authors u-mb-0" data-test="ResultList-authors"> <span class="u-visually-hidden">Authors: </span> <span class="c-listing__authors-list">Jianchang Hu and Silke Szymczak</span> </div> <div data-test="teaser-citation"> <span class="u-visually-hidden">Citation:</span> <em data-test="journal-title">BioData Mining</em> 2024 <span>17</span>:10 </div> <div class="c-listing__metadata"> <span data-test="result-list"><span class="u-visually-hidden">Content type: </span>Research</span> <span data-test="published-on">Published on: <span itemprop="datePublished">16 April 2024</span></span> </div> <ul class="c-listing__view-options" data-test="article-list-search-results"> <li> <a href="/articles/10.1186/s13040-024-00361-5" data-track="select_search_result" data-track-category="Article List" data-track-action="Click Fulltext" data-test="fulltext-link" data-track-label="10.1186/s13040-024-00361-5" itemprop="citation"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> Full Text </span> </a> </li> <li> <a data-track="content_download" data-track-context="article listing link" data-track-type="article pdf download" data-track-category="Article List" data-track-action="Download PDF" data-track-label="10.1186/s13040-024-00361-5" data-test="pdf-link" href="/counter/pdf/10.1186/s13040-024-00361-5.pdf"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> PDF </span> </a> </li> </ul> </article> </li> <li class="c-listing__item u-keyline"> <article class="c-listing__content u-mb-16" itemscope itemtype="http://schema.org/ScholarlyArticle"> <h3 class="c-listing__title" itemprop="name"> <a itemprop="url" data-test="title-link" href="/articles/10.1186/s13040-024-00360-6" data-track="select_search_result" data-track-context="bmc search results page or article listing">MOCAT: multi-omics integration with auxiliary classifiers enhanced autoencoder</a> </h3> <p> Integrating multi-omics data is emerging as a critical approach in enhancing our understanding of complex diseases. Innovative computational methods capable of managing high-dimensional and heterogeneous datas... </p> <div class="c-listing__authors u-mb-0" data-test="ResultList-authors"> <span class="u-visually-hidden">Authors: </span> <span class="c-listing__authors-list">Xiaohui Yao, Xiaohan Jiang, Haoran Luo, Hong Liang, Xiufen Ye, Yanhui Wei and Shan Cong</span> </div> <div data-test="teaser-citation"> <span class="u-visually-hidden">Citation:</span> <em data-test="journal-title">BioData Mining</em> 2024 <span>17</span>:9 </div> <div class="c-listing__metadata"> <span data-test="result-list"><span class="u-visually-hidden">Content type: </span>Research</span> <span data-test="published-on">Published on: <span itemprop="datePublished">5 March 2024</span></span> </div> <ul class="c-listing__view-options" data-test="article-list-search-results"> <li> <a href="/articles/10.1186/s13040-024-00360-6" data-track="select_search_result" data-track-category="Article List" data-track-action="Click Fulltext" data-test="fulltext-link" data-track-label="10.1186/s13040-024-00360-6" itemprop="citation"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> Full Text </span> </a> </li> <li> <a data-track="content_download" data-track-context="article listing link" data-track-type="article pdf download" data-track-category="Article List" data-track-action="Download PDF" data-track-label="10.1186/s13040-024-00360-6" data-test="pdf-link" href="/counter/pdf/10.1186/s13040-024-00360-6.pdf"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> PDF </span> </a> </li> </ul> </article> </li> <li class="c-listing__item u-keyline"> <article class="c-listing__content u-mb-16" itemscope itemtype="http://schema.org/ScholarlyArticle"> <h3 class="c-listing__title" itemprop="name"> <a itemprop="url" data-test="title-link" href="/articles/10.1186/s13040-024-00359-z" data-track="select_search_result" data-track-context="bmc search results page or article listing">Interpreting drug synergy in breast cancer with deep learning using target-protein inhibition profiles</a> </h3> <p> Breast cancer is the most common malignancy among women worldwide. Despite advances in treating breast cancer over the past decades, drug resistance and adverse effects remain challenging. Recent therapeutic p... </p> <div class="c-listing__authors u-mb-0" data-test="ResultList-authors"> <span class="u-visually-hidden">Authors: </span> <span class="c-listing__authors-list">Thanyawee Srithanyarat, Kittisak Taoma, Thana Sutthibutpong, Marasri Ruengjitchatchawalya, Monrudee Liangruksa and Teeraphan Laomettachit</span> </div> <div data-test="teaser-citation"> <span class="u-visually-hidden">Citation:</span> <em data-test="journal-title">BioData Mining</em> 2024 <span>17</span>:8 </div> <div class="c-listing__metadata"> <span data-test="result-list"><span class="u-visually-hidden">Content type: </span>Research</span> <span data-test="published-on">Published on: <span itemprop="datePublished">29 February 2024</span></span> </div> <ul class="c-listing__view-options" data-test="article-list-search-results"> <li> <a href="/articles/10.1186/s13040-024-00359-z" data-track="select_search_result" data-track-category="Article List" data-track-action="Click Fulltext" data-test="fulltext-link" data-track-label="10.1186/s13040-024-00359-z" itemprop="citation"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> Full Text </span> </a> </li> <li> <a data-track="content_download" data-track-context="article listing link" data-track-type="article pdf download" data-track-category="Article List" data-track-action="Download PDF" data-track-label="10.1186/s13040-024-00359-z" data-test="pdf-link" href="/counter/pdf/10.1186/s13040-024-00359-z.pdf"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> PDF </span> </a> </li> </ul> </article> </li> <li class="c-listing__item u-keyline"> <article class="c-listing__content u-mb-16" itemscope itemtype="http://schema.org/ScholarlyArticle"> <h3 class="c-listing__title" itemprop="name"> <a itemprop="url" data-test="title-link" href="/articles/10.1186/s13040-024-00358-0" data-track="select_search_result" data-track-context="bmc search results page or article listing">Interaction models matter: an efficient, flexible computational framework for model-specific investigation of epistasis</a> </h3> <p> Epistasis, the interaction between two or more genes, is integral to the study of genetics and is present throughout nature. Yet, it is seldom fully explored as most approaches primarily focus on single-locus ... </p> <div class="c-listing__authors u-mb-0" data-test="ResultList-authors"> <span class="u-visually-hidden">Authors: </span> <span class="c-listing__authors-list">Sandra Batista, Vered Senderovich Madar, Philip J. Freda, Priyanka Bhandary, Attri Ghosh, Nicholas Matsumoto, Apurva S. Chitre, Abraham A. Palmer and Jason H. Moore</span> </div> <div data-test="teaser-citation"> <span class="u-visually-hidden">Citation:</span> <em data-test="journal-title">BioData Mining</em> 2024 <span>17</span>:7 </div> <div class="c-listing__metadata"> <span data-test="result-list"><span class="u-visually-hidden">Content type: </span>Methodology</span> <span data-test="published-on">Published on: <span itemprop="datePublished">28 February 2024</span></span> </div> <ul class="c-listing__view-options" data-test="article-list-search-results"> <li> <a href="/articles/10.1186/s13040-024-00358-0" data-track="select_search_result" data-track-category="Article List" data-track-action="Click Fulltext" data-test="fulltext-link" data-track-label="10.1186/s13040-024-00358-0" itemprop="citation"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> Full Text </span> </a> </li> <li> <a data-track="content_download" data-track-context="article listing link" data-track-type="article pdf download" data-track-category="Article List" data-track-action="Download PDF" data-track-label="10.1186/s13040-024-00358-0" data-test="pdf-link" href="/counter/pdf/10.1186/s13040-024-00358-0.pdf"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> PDF </span> </a> </li> </ul> </article> </li> <li class="c-listing__item u-keyline"> <article class="c-listing__content u-mb-16" itemscope itemtype="http://schema.org/ScholarlyArticle"> <h3 class="c-listing__title" itemprop="name"> <a itemprop="url" data-test="title-link" href="/articles/10.1186/s13040-024-00356-2" data-track="select_search_result" data-track-context="bmc search results page or article listing">Assessment of the causal relationship between gut microbiota and cardiovascular diseases: a bidirectional Mendelian randomization analysis</a> </h3> <p> Previous studies have shown an association between gut microbiota and cardiovascular diseases (CVDs). However, the underlying causal relationship remains unclear. This study aims to elucidate the causal relati... </p> <div class="c-listing__authors u-mb-0" data-test="ResultList-authors"> <span class="u-visually-hidden">Authors: </span> <span class="c-listing__authors-list">Xiao-Ce Dai, Yi Yu, Si-Yu Zhou, Shuo Yu, Mei-Xiang Xiang and Hong Ma</span> </div> <div data-test="teaser-citation"> <span class="u-visually-hidden">Citation:</span> <em data-test="journal-title">BioData Mining</em> 2024 <span>17</span>:6 </div> <div class="c-listing__metadata"> <span data-test="result-list"><span class="u-visually-hidden">Content type: </span>Research</span> <span data-test="published-on">Published on: <span itemprop="datePublished">26 February 2024</span></span> </div> <ul class="c-listing__view-options" data-test="article-list-search-results"> <li> <a href="/articles/10.1186/s13040-024-00356-2" data-track="select_search_result" data-track-category="Article List" data-track-action="Click Fulltext" data-test="fulltext-link" data-track-label="10.1186/s13040-024-00356-2" itemprop="citation"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> Full Text </span> </a> </li> <li> <a data-track="content_download" data-track-context="article listing link" data-track-type="article pdf download" data-track-category="Article List" data-track-action="Download PDF" data-track-label="10.1186/s13040-024-00356-2" data-test="pdf-link" href="/counter/pdf/10.1186/s13040-024-00356-2.pdf"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> PDF </span> </a> </li> </ul> </article> </li> <li class="c-listing__item u-keyline"> <article class="c-listing__content u-mb-16" itemscope itemtype="http://schema.org/ScholarlyArticle"> <h3 class="c-listing__title" itemprop="name"> <a itemprop="url" data-test="title-link" href="/articles/10.1186/s13040-024-00357-1" data-track="select_search_result" data-track-context="bmc search results page or article listing">A network-based drug prioritization and combination analysis for the MEK5/ERK5 pathway in breast cancer</a> </h3> <p> Prioritizing candidate drugs based on genome-wide expression data is an emerging approach in systems pharmacology due to its holistic perspective for preclinical drug evaluation. In the current study, a networ... </p> <div class="c-listing__authors u-mb-0" data-test="ResultList-authors"> <span class="u-visually-hidden">Authors: </span> <span class="c-listing__authors-list">Regan Odongo, Asuman Demiroglu-Zergeroglu and Tunahan Çakır</span> </div> <div data-test="teaser-citation"> <span class="u-visually-hidden">Citation:</span> <em data-test="journal-title">BioData Mining</em> 2024 <span>17</span>:5 </div> <div class="c-listing__metadata"> <span data-test="result-list"><span class="u-visually-hidden">Content type: </span>Research</span> <span data-test="published-on">Published on: <span itemprop="datePublished">21 February 2024</span></span> </div> <ul class="c-listing__view-options" data-test="article-list-search-results"> <li> <a href="/articles/10.1186/s13040-024-00357-1" data-track="select_search_result" data-track-category="Article List" data-track-action="Click Fulltext" data-test="fulltext-link" data-track-label="10.1186/s13040-024-00357-1" itemprop="citation"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> Full Text </span> </a> </li> <li> <a data-track="content_download" data-track-context="article listing link" data-track-type="article pdf download" data-track-category="Article List" data-track-action="Download PDF" data-track-label="10.1186/s13040-024-00357-1" data-test="pdf-link" href="/counter/pdf/10.1186/s13040-024-00357-1.pdf"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> PDF </span> </a> </li> </ul> </article> </li> <li class="c-listing__item u-keyline"> <article class="c-listing__content u-mb-16" itemscope itemtype="http://schema.org/ScholarlyArticle"> <h3 class="c-listing__title" itemprop="name"> <a itemprop="url" data-test="title-link" href="/articles/10.1186/s13040-023-00353-x" data-track="select_search_result" data-track-context="bmc search results page or article listing">m1A-Ensem: accurate identification of 1-methyladenosine sites through ensemble models</a> </h3> <p> 1-methyladenosine (m1A) is a variant of methyladenosine that holds a methyl substituent in the 1st position having a prominent role in RNA stability and human metabolites. </p> <div class="c-listing__authors u-mb-0" data-test="ResultList-authors"> <span class="u-visually-hidden">Authors: </span> <span class="c-listing__authors-list">Muhammad Taseer Suleman, Fahad Alturise, Tamim Alkhalifah and Yaser Daanial Khan</span> </div> <div data-test="teaser-citation"> <span class="u-visually-hidden">Citation:</span> <em data-test="journal-title">BioData Mining</em> 2024 <span>17</span>:4 </div> <div class="c-listing__metadata"> <span data-test="result-list"><span class="u-visually-hidden">Content type: </span>Research</span> <span data-test="published-on">Published on: <span itemprop="datePublished">15 February 2024</span></span> </div> <ul class="c-listing__view-options" data-test="article-list-search-results"> <li> <a href="/articles/10.1186/s13040-023-00353-x" data-track="select_search_result" data-track-category="Article List" data-track-action="Click Fulltext" data-test="fulltext-link" data-track-label="10.1186/s13040-023-00353-x" itemprop="citation"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> Full Text </span> </a> </li> <li> <a data-track="content_download" data-track-context="article listing link" data-track-type="article pdf download" data-track-category="Article List" data-track-action="Download PDF" data-track-label="10.1186/s13040-023-00353-x" data-test="pdf-link" href="/counter/pdf/10.1186/s13040-023-00353-x.pdf"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> PDF </span> </a> </li> </ul> </article> </li> <li class="c-listing__item u-keyline"> <article class="c-listing__content u-mb-16" itemscope itemtype="http://schema.org/ScholarlyArticle"> <h3 class="c-listing__title" itemprop="name"> <a itemprop="url" data-test="title-link" href="/articles/10.1186/s13040-024-00355-3" data-track="select_search_result" data-track-context="bmc search results page or article listing">Revealing third-order interactions through the integration of machine learning and entropy methods in genomic studies</a> </h3> <p> Non-linear relationships at the genotype level are essential in understanding the genetic interactions of complex disease traits. Genome-wide association Studies (GWAS) have revealed statistical association of... </p> <div class="c-listing__authors u-mb-0" data-test="ResultList-authors"> <span class="u-visually-hidden">Authors: </span> <span class="c-listing__authors-list">Burcu Yaldız, Onur Erdoğan, Sevda Rafatov, Cem Iyigün and Yeşim Aydın Son</span> </div> <div data-test="teaser-citation"> <span class="u-visually-hidden">Citation:</span> <em data-test="journal-title">BioData Mining</em> 2024 <span>17</span>:3 </div> <div class="c-listing__metadata"> <span data-test="result-list"><span class="u-visually-hidden">Content type: </span>Research</span> <span data-test="published-on">Published on: <span itemprop="datePublished">30 January 2024</span></span> </div> <ul class="c-listing__view-options" data-test="article-list-search-results"> <li> <a href="/articles/10.1186/s13040-024-00355-3" data-track="select_search_result" data-track-category="Article List" data-track-action="Click Fulltext" data-test="fulltext-link" data-track-label="10.1186/s13040-024-00355-3" itemprop="citation"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> Full Text </span> </a> </li> <li> <a data-track="content_download" data-track-context="article listing link" data-track-type="article pdf download" data-track-category="Article List" data-track-action="Download PDF" data-track-label="10.1186/s13040-024-00355-3" data-test="pdf-link" href="/counter/pdf/10.1186/s13040-024-00355-3.pdf"> <svg class="c-listing__view-options-icon" width="12" height="12" aria-hidden="true" focusable="false"> <use xlink:href="#icon-chevron-right"></use> </svg> <span> <span class="u-visually-hidden">View </span> PDF </span> </a> </li> </ul> </article> </li> <li class="c-listing__item"> <article class="c-listing__content u-mb-16" itemscope itemtype="http://schema.org/ScholarlyArticle"> <h3 class="c-listing__title" itemprop="name"> <a itemprop="url" data-test="title-link" href="/articles/10.1186/s13040-024-00354-4" data-track="select_search_result" data-track-context="bmc search results page or article listing">Antibody selection strategies and their impact in predicting clinical malaria based on multi-sera data</a> </h3> <p> Nowadays, the chance of discovering the best antibody candidates for predicting clinical malaria has notably increased due to the availability of multi-sera data. 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