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Use an existing PDB or <a href="/docs/general-help/computed-structure-models-and-rcsborg">Computed Structure Model</a> entry ID, upload a local file with atomic coordinates, or enter a URL of a file on the web</div><div class="div"><div class="btn-group" role="group" style="margin-left: 2px; float: right;" target="_blank" data-toggle="tooltip" data-placement="top" onclick="openEditor()" data-original-title="Open the most recent query in the Alignment API query editor"> <button class="btn btn-sm btn-default"><span class="glyphicon glyphicon-cog"> </span> Alignment API </button></div></div></div></div><div class="row"><div id="app-container"></div></div><div class="row"><div class="well well-sm well-nomar" style="margin-top: 20px;"><h5>Citation:</h5><p>To cite this tool, please reference: <a href="https://doi.org/10.1093/bioinformatics/btae370">10.1093/bioinformatics/btae370</a></p><p>Visit our <a href="/docs/tools/pairwise-structure-alignment">help page</a> for guidance on using this tool and for detailed references on the alignment algorithms </p></div></div></div><script>const headers = {}; headers[RC.internalAnalyticsOriginHeaderKey] = RC.internalAnalyticsOriginHeaderValue; headers[RC.internalAnalyticsStageHeaderKey] = RC.internalAnalyticsStageHeaderValue; const rcsbStructureAlignmentApp = RcsbStructureAlignment.createApp('app-container', { service: { data: { base: RC.dataUrl, httpHeaders: headers }, search: { base: RC.searchUrl, httpHeaders: headers }, alignment: { base: RC.alignmentUrl, httpHeaders: headers }, fileUpload: { base: RC.fileStorageUrl, upload: RC.fileStoragePutEndpoint, dowload: RC.fileStorageGetEndpoint, httpHeaders: headers } }, environment: { base: window.location.protocol + '//' + window.location.host } }); const openEditor = function() { const base = RC.alignmentHost+"/query-editor.html"; rcsbStructureAlignmentApp.then((instance) => { const request = instance.request(); const query = (request != null) ? 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