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src="https://sea1.discourse-cdn.com/flex015/theme-javascripts/e49bcb48808bbd6c58bcd39dfa81a13c3221f0c4.js?__ws=forum.image.sc" data-theme-id="6" nonce="LxMIEN86ao7gRr2J4A7vRwdIh"></script> <header> <a href="/"> Image.sc Forum </a> </header> <div id="main-outlet" class="wrap" role="main"> <div class="topic-list-container" itemscope itemtype='http://schema.org/ItemList'> <meta itemprop='itemListOrder' content='http://schema.org/ItemListOrderDescending'> <table class='topic-list'> <thead> <tr> <th>Topic</th> <th></th> <th class="replies">Replies</th> <th class="views">Views</th> <th>Activity</th> </tr> </thead> <tbody> <tr class="topic-list-item"> <td class="main-link" itemprop='itemListElement' itemscope itemtype='http://schema.org/ListItem'> <meta itemprop='position' content='1'> <span class="link-top-line"> <a itemprop='url' href='https://forum.image.sc/t/related-communities/33872' class='title raw-link raw-topic-link'>Related Communities</a> </span> <div class="link-bottom-line"> <a href='/c/web-site/3' class='badge-wrapper bullet'> <span class='badge-category-bg' style='background-color: #808281'></span> <span class='badge-category clear-badge'> <span class='category-name'>Websites</span> </span> </a> <div class="discourse-tags"> </div> </div> <p class='excerpt'> There are several other community forums whose topics overlap with this one: Microforum’s focus is hardware, acquisition, and specimen-related aspects of scientific imaging, particularly (but not limited to) theory … </p> </td> <td class='posters'> <a rel='nofollow' href="https://forum.image.sc/u/ctrueden" class="latest single"> <img width="25" height="25" src="/user_avatar/forum.image.sc/ctrueden/25/13505_2.png" class="avatar" title='Curtis Rueden - Original Poster, Most Recent Poster' aria-label='Curtis Rueden - Original Poster, Most Recent Poster'> </a> </td> <td class="replies"> <span class='posts' title='posts'>2</span> </td> <td class="views"> <span class='views' title='views'>30799</span> </td> <td> February 10, 2020 </td> </tr> <tr class="topic-list-item"> <td class="main-link" itemprop='itemListElement' itemscope itemtype='http://schema.org/ListItem'> <meta itemprop='position' content='2'> <span class="link-top-line"> <a itemprop='url' href='https://forum.image.sc/t/welcome-to-the-image-sc-forum/18727' class='title raw-link raw-topic-link'>Welcome to the Image.sc Forum!</a> </span> <div class="link-bottom-line"> <a href='/c/announcements/10' class='badge-wrapper bullet'> <span class='badge-category-bg' style='background-color: #AB9364'></span> <span class='badge-category clear-badge'> <span class='category-name'>Announcements</span> </span> </a> <div class="discourse-tags"> </div> </div> <p class='excerpt'> Welcome to the Scientific Community Image Forum at forum.image.sc! This forum’s focus is software-oriented aspects of scientific imaging, particularly (but not limited to) image analysis, processing, acquisition, storag… </p> </td> <td class='posters'> <a rel='nofollow' href="https://forum.image.sc/u/ctrueden" class=""> <img width="25" height="25" src="/user_avatar/forum.image.sc/ctrueden/25/13505_2.png" class="avatar" title='Curtis Rueden - Original Poster' aria-label='Curtis Rueden - Original Poster'> </a> <a rel='nofollow' href="https://forum.image.sc/u/etadobson" class="latest"> <img width="25" height="25" src="/user_avatar/forum.image.sc/etadobson/25/17_2.png" class="avatar" title='Ellen TA Dobson - Most Recent Poster' aria-label='Ellen TA Dobson - Most Recent Poster'> </a> </td> <td class="replies"> <span class='posts' title='posts'>4</span> </td> <td class="views"> <span class='views' title='views'>19423</span> </td> <td> April 29, 2020 </td> </tr> <tr class="topic-list-item"> <td class="main-link" itemprop='itemListElement' itemscope itemtype='http://schema.org/ListItem'> <meta itemprop='position' content='3'> <span class="link-top-line"> <a itemprop='url' href='https://forum.image.sc/t/help-with-t-cruzi-parasite-segmentation-and-infected-cell-detection-using-cellpose/111145' class='title raw-link raw-topic-link'>Help with T. cruzi parasite segmentation and infected cell detection using Cellpose</a> </span> <div class="link-bottom-line"> <a href='/c/image-analysis/6' class='badge-wrapper bullet'> <span class='badge-category-bg' style='background-color: #25AAE2'></span> <span class='badge-category clear-badge'> <span class='category-name'>Image Analysis</span> </span> </a> <div class="discourse-tags"> <a href='https://forum.image.sc/tag/cellpose' class='discourse-tag'>cellpose</a> </div> </div> </td> <td class='posters'> <a rel='nofollow' href="https://forum.image.sc/u/Arianna_Zucc" class=""> <img width="25" height="25" src="https://avatars.discourse-cdn.com/v4/letter/a/3da27b/25.png" class="avatar" title='Arianna Zucc - Original Poster' aria-label='Arianna Zucc - Original Poster'> </a> <a rel='nofollow' href="https://forum.image.sc/u/pr4deepr" class=""> <img width="25" height="25" src="/user_avatar/forum.image.sc/pr4deepr/25/6640_2.png" class="avatar" title='Pradeep Rajasekhar - Frequent Poster' aria-label='Pradeep Rajasekhar - Frequent Poster'> </a> <a rel='nofollow' href="https://forum.image.sc/u/JuliusB" class="latest"> <img width="25" height="25" src="/user_avatar/forum.image.sc/juliusb/25/43243_2.png" class="avatar" title='Julius Bogomolovas - Most Recent Poster' aria-label='Julius Bogomolovas - Most Recent Poster'> </a> </td> <td class="replies"> <span class='posts' title='posts'>2</span> </td> <td class="views"> <span class='views' title='views'>8</span> </td> <td> April 9, 2025 </td> </tr> <tr class="topic-list-item"> <td class="main-link" itemprop='itemListElement' itemscope itemtype='http://schema.org/ListItem'> <meta itemprop='position' content='4'> <span class="link-top-line"> <a itemprop='url' href='https://forum.image.sc/t/unable-to-download-allen-mouse-25um-atlas-in-china-gui-crashes-when-attempting-to-load-atlas/111040' class='title raw-link raw-topic-link'>Unable to Download allen_mouse_25um Atlas in China; GUI Crashes When Attempting to Load Atlas</a> </span> <div class="link-bottom-line"> <a href='/c/usage-issues/7' class='badge-wrapper bullet'> <span class='badge-category-bg' style='background-color: #BF1E2E'></span> <span class='badge-category clear-badge'> <span class='category-name'>Usage & Issues</span> </span> </a> <div class="discourse-tags"> <a href='https://forum.image.sc/tag/abba' class='discourse-tag'>abba</a> , <a href='https://forum.image.sc/tag/brainglobe' class='discourse-tag'>brainglobe</a> , <a href='https://forum.image.sc/tag/brainglobe-atlasapi' class='discourse-tag'>brainglobe-atlasapi</a> </div> </div> </td> <td class='posters'> <a rel='nofollow' href="https://forum.image.sc/u/huayi" class="latest"> <img width="25" height="25" src="https://avatars.discourse-cdn.com/v4/letter/h/f17d59/25.png" class="avatar" title='huayi - Original Poster, Most Recent Poster' aria-label='huayi - Original Poster, Most Recent Poster'> </a> <a rel='nofollow' href="https://forum.image.sc/u/adamltyson" class=""> <img width="25" height="25" src="/user_avatar/forum.image.sc/adamltyson/25/29870_2.png" class="avatar" title='Adam Tyson - Frequent Poster' aria-label='Adam Tyson - Frequent Poster'> </a> </td> <td class="replies"> <span class='posts' title='posts'>2</span> </td> <td class="views"> <span class='views' title='views'>16</span> </td> <td> April 9, 2025 </td> </tr> <tr class="topic-list-item"> <td class="main-link" itemprop='itemListElement' itemscope itemtype='http://schema.org/ListItem'> <meta itemprop='position' content='5'> <span class="link-top-line"> <a itemprop='url' href='https://forum.image.sc/t/exporting-objects-as-geojson-how-do-i-export-the-objects-in-hierarchy-order/111140' class='title raw-link raw-topic-link'>Exporting objects as GeoJSON; How do I export the objects in hierarchy order?</a> </span> <div class="link-bottom-line"> <a href='/c/image-analysis/6' class='badge-wrapper bullet'> <span class='badge-category-bg' style='background-color: #25AAE2'></span> <span class='badge-category clear-badge'> <span class='category-name'>Image Analysis</span> </span> </a> <div class="discourse-tags"> <a href='https://forum.image.sc/tag/macro' class='discourse-tag'>macro</a> , <a href='https://forum.image.sc/tag/qupath' class='discourse-tag'>qupath</a> </div> </div> </td> <td class='posters'> <a rel='nofollow' href="https://forum.image.sc/u/Reed" class=""> <img width="25" height="25" src="https://avatars.discourse-cdn.com/v4/letter/r/9de0a6/25.png" class="avatar" title='Reed - 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number of biologists trained in the last 5 years</a> </span> <div class="link-bottom-line"> <a href='/c/announcements/10' class='badge-wrapper bullet'> <span class='badge-category-bg' style='background-color: #AB9364'></span> <span class='badge-category clear-badge'> <span class='category-name'>Announcements</span> </span> </a> <div class="discourse-tags"> </div> </div> </td> <td class='posters'> <a rel='nofollow' href="https://forum.image.sc/u/bcimini" class="latest single"> <img width="25" height="25" src="/user_avatar/forum.image.sc/bcimini/25/14206_2.png" class="avatar" title='Beth Cimini - Original Poster, Most Recent Poster' aria-label='Beth Cimini - Original Poster, Most Recent Poster'> </a> </td> <td class="replies"> <span class='posts' title='posts'>0</span> </td> <td class="views"> <span class='views' title='views'>19</span> </td> <td> April 8, 2025 </td> </tr> <tr class="topic-list-item"> <td class="main-link" itemprop='itemListElement' itemscope itemtype='http://schema.org/ListItem'> <meta itemprop='position' content='27'> <span class="link-top-line"> <a itemprop='url' href='https://forum.image.sc/t/nullpointerexception-when-running-affine-fusion-on-ip-tiff-xml-sample-data/111071' class='title raw-link raw-topic-link'>NullPointerException when running ./affine-fusion on IP_TIFF_XML sample data</a> </span> <div class="link-bottom-line"> <a href='/c/usage-issues/7' class='badge-wrapper bullet'> <span class='badge-category-bg' style='background-color: #BF1E2E'></span> <span class='badge-category clear-badge'> <span class='category-name'>Usage & Issues</span> </span> </a> <div class="discourse-tags"> <a href='https://forum.image.sc/tag/bigstitcher' class='discourse-tag'>bigstitcher</a> </div> </div> </td> <td class='posters'> <a rel='nofollow' href="https://forum.image.sc/u/martin.barker" class=""> <img width="25" height="25" src="/user_avatar/forum.image.sc/martin.barker/25/95400_2.png" class="avatar" title='martin.barker - 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