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OMERO | Open Microscopy Environment (OME)

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width:32px;"/></a></li> <li class="has-submenu"><a href="/about/">About Us</a> <ul class="submenu menu vertical" data-submenu> <li><a href="/about/">Overview</a></li> <li><a href="/teams/">OME Teams</a></li> <li><a href="/contributors/">Contributors</a></li> <li><a href="/commercial-partners/">Commercial Partners</a></li> <li><a href="/licensing/">Licensing</a></li> <li><a href="/citing-ome/">Citing OME</a></li> <li><a href="/artwork/">Artwork</a></li> <li><a href="/training/">Training</a></li> <li><a href="/events/ome-community-meeting-2024/">OME 2024</a></li> </ul> </li> <li class="has-submenu"><a href="/news/">News</a> <ul class="submenu menu vertical" data-submenu> <li><a href="/news/">Overview</a></li> <li><a href="/announcements/">Announcements</a></li> <li><a href="/events/">Events</a></li> <li><a href="/minutes/">Minutes</a></li> <li><a href="/security/">Security</a></li> <li><a href="/careers/">Careers</a></li> <li><a href="/blog/">Blog</a></li> </ul> </li> </ul> </div> <div class="top-bar-right"> <ul class="vertical medium-horizontal dropdown menu" data-responsive-menu="accordion medium-dropdown"> <li class="has-submenu"><a href="/products/">Products</a> <ul class="submenu menu vertical" data-submenu> <li><a href="/products/">Overview</a></li> <li><a href="/omero/">OMERO</a></li> <li><a href="/bio-formats/">Bio-Formats</a></li> <li><a href="/ome-files/">OME Files</a></li> </ul> </li> <li class="has-submenu"><a href="/support/">Support</a> <ul class="submenu menu vertical" data-submenu> <li><a href="/support/">Overview</a></li> <li><a href="/security/">Security</a></li> <li><a href="/training/">Training</a></li> </ul> </li> <li><a href="/docs/">Docs</a></li> <li class="hide-for-small-only"><a href="/explore/" class="button btn-indigo" style="color: #eceff1; margin-left: 10px;">Explore</a></li> <li class="show-for-small-only"><a href="/explore/">Explore</a></li> </ul> </div> </div> <!--</div> make header sticky? --> <a name="top-of-page"></a> <!-- begin banner announcement --> <!-- <section class="announcement"> <span><i class="fa fa-bullhorn"></i> IMPORTANT: Critical security release - OMERO 5.6.1 now available - <a class="styled-link" href="/2020/03/25/omero-5-6-1.html">Read the Announcement</a></span> </section> --> <!-- end banner announcement --> <div class="title-bar" data-responsive-toggle="omero-menu" data-hide-for="medium"> <button class="menu-icon" type="button" data-toggle></button> OMERO <div class="title-bar-title"></div> </div> <div class="menu-subnav" id="omero-menu"> <div class="row"> <ul class="vertical medium-horizontal dropdown menu-subnav menu expanded small-12 columns" data-responsive-menu="accordion medium-dropdown"> <li><a href="/omero/">Overview</a></li> <li><a href="/omero/downloads/">Downloads</a></li> <li><a href="/omero/scientists/"><span class="show-for-large-only">for </span>Scientists</a></li> <li><a href="/omero/developers/"><span class="show-for-large-only">for </span>Developers</a></li> <li><a href="/omero/institution/"><span class="show-for-large-only">for </span>Institutions</a></li> <li><a href="/omero/features/"><span class="show-for-large-only">Key </span>Features</a></li> </ul> </div> </div> <header class="marketing-hero" id="bg-image-omero"> <div class="row homepage text-center bg-image-text-container"> <div class="small-12 columns"> <h1 class="hero-main-header"><img src="/img/logos/omero-white.svg" alt="OMERO logo" class="logo-hero" /></h1> <p class="hero-subheader small-12"> From the microscope to <a href="/omero/features/publish/">publication</a>, OMERO handles all your images in a secure central repository. You can <a href="/omero/features/view/">view</a>, <a href="/omero/features/organize/">organize</a>, <a href="/omero/features/analyze/">analyze</a> and <a href="/omero/features/organize/">share</a> your data from anywhere you have internet access. Work with your images from a desktop app (Windows, Mac or Linux), from the web or from 3rd party software. Over 150 image file formats supported, including all major microscope formats. </p> <br> <a href="/omero/downloads/" class="large button sites-button btn-red">Download Version 5.6</a> <a href="https://omero.readthedocs.io/en/stable/" target="_blank" class="hero-link">Read the Docs</a> <a href="/omero/institution/getting-started.html" target="_blank" class="hero-link">Start with OMERO at your Institution</a> </div> </div> </header> <hr class="whitespace"> <div class="row column text-center"> <h2>Getting Started</h2> <h5 class="subheader">With our dedicated user help website and extensive technical documentation, all the information to get you started with OMERO is linked in the sections below. The institutional section is aimed at both facility managers and system administrators.</h5> </div> <hr> <!-- begin OMERO users --> <div class="row small-up-1 medium-up-1 large-up-3"> <div class="column text-center"> <img class="user-group-illustration" alt="OMERO for Scientists" src="/img/icons/user-groups_scientists.svg"> <h6>OMERO for</h6> <h3 class="header-indigo">Scientists</h3> <p class="caption">Your microscopy images are securely stored but shareable and available from anywhere you have internet access.</p> <a href="/omero/scientists/" class="button medium">Learn More</a> <hr class="hide-for-large-only invisible"/> </div> <div class="column text-center"> <img class="user-group-illustration" alt="OMERO for Developers" src="/img/icons/user-groups_developers.svg"> <h6>OMERO for</h6> <h3 class="header-indigo">Developers</h3> <p class="caption">Join the OME community and extend OMERO鈥檚 functionality to suit your individual needs.</p> <a href="/omero/developers/" class="button medium">Learn More</a> <hr class="hide-for-large-only invisible"/> </div> <div class="column text-center"> <img class="user-group-illustration" alt="OMERO for Institutions" src="/img/icons/user-groups_institutions.svg"> <h6>OMERO for</h6> <h3 class="header-indigo">Your Institution</h3> <p class="caption">OMERO securely stores image data and enables all of your users to manage the data from the same platform.</p> <a href="/omero/institution/" class="button medium">Learn More</a> <hr class="hide-for-large-only invisible"/> </div> </div> <!-- end OMERO users --> <!-- begin OMERO capabilities --> <hr class="whitespace"> <div class="row column text-center"> <h2>The Power of OMERO</h2> <h5 class="subheader">A complete platform for managing your images, OMERO has many features and expansion points to integrate with your existing tools.</h5> </div> <hr> <hr class="invisible"> <div class="row small-up-12 medium-up-3"> <div class="column"> <a href="/omero/"> <i class="icon-fa-red fa fa-star fa-2x"></i> </a> <div class="omero-key-feature-container"> <h4>new</h4> <p>The recent releases of OMERO are packed full of new features and functionality.</p> <a href="/omero/" class="button small">Learn more</a> </div> </div> <div class="column"> <a href="/omero/features/import/"> <i class="icon-fa-blue fa fa-upload fa-2x"></i> </a> <div class="omero-key-feature-container"> <h4>import</h4> <p>Import over 150 image formats from microscope, graphics and other imaging formats. Use the Insight client, command line interface or transfer files directly to OMERO.</p> <a href="/omero/features/import/" class="button small">Learn more</a> </div> </div> <div class="column"> <a href="/omero/features/organize/"> <i class="icon-fa-green fa fa-sitemap fa-2x"></i> </a> <div class="omero-key-feature-container"> <h4>organize</h4> <p>Annotate your data with Tags, Comments, Files and more. Browse or Search your images and share with collaborators.</p> <a href="/omero/features/organize/" class="button small">Learn more</a> </div> </div> <div class="column"> <a href="/omero/features/view/"> <i class="icon-fa-blue fa fa-eye fa-2x"></i> </a> <div class="omero-key-feature-container"> <h4>view</h4> <p>Use OMERO clients to work with image data over the internet from anywhere. Browse thumbnails, image previews and view in full multi-dimensional viewer. High Content Screening data is also supported.</p> <a href="/omero/features/view/" class="button small">Learn more</a> </div> </div> <div class="column"> <a href="/omero/features/analyze/"> <i class="icon-fa-green fa fa-line-chart fa-2x"></i> </a> <div class="omero-key-feature-container"> <h4>analyze</h4> <p>Use ImageJ, MATLAB, R, scripts and other tools to run analysis on data in OMERO and save results on the server.</p> <a href="/omero/features/analyze/" class="button small">Learn more</a> </div> </div> <div class="column"> <a href="/omero/features/publish/"> <i class="icon-fa-red fa fa-rocket fa-2x"></i> </a> <div class="omero-key-feature-container"> <h4>publish</h4> <p>Publish your raw data straight from the server using URLs to link directly to the web-based image viewer in a manuscript or embed images into your website.</p> <a href="/omero/features/publish/" class="button small">Learn more</a> </div> </div> <div class="column"> <a href="/omero/features/export/"> <i class="icon-fa-green fa fa-share fa-2x"></i> </a> <div class="omero-key-feature-container"> <h4>export</h4> <p>Download your original image data from anywhere, export as OME-TIFF or movie formats or quickly create figures for publication.</p> <a href="/omero/features/export/" class="button small">Learn more</a> </div> </div> <div class="column"> <a href="/omero/features/learning/"> <i class="icon-fa-red fa fa-graduation-cap fa-2x"></i> </a> <div class="omero-key-feature-container"> <h4>teach</h4> <p>Set up a Virtual Microscope and connect OMERO into a virtual learning environment.</p> <a href="/omero/features/learning/" class="button small">Learn more</a> </div> </div> <div class="column"> <a href="/omero/features/utility/"> <i class="icon-fa-blue fa fa-building fa-2x"></i> </a> <div class="omero-key-feature-container"> <h4>administrate</h4> <p>Manage users and groups, send automated emails from the server, use institutional authentication, and more.</p> <a href="/omero/features/utility/" class="button small">Learn more</a> </div> </div> <div class="column"> <a href="/omero/apps/"> <i class="icon-fa-red fa fa-cog fa-2x"></i> </a> <div class="omero-key-feature-container"> <h4>apps</h4> <p>Enhance your install with OMERO apps.</p> <a href="/omero/apps/" class="button small">Learn more</a> </div> </div> </div> <!-- end OMERO capabilities --> <hr class="whitespace"> <!-- begin anchor --> <div class="text-center"> <a id="back-to-top" href="#top-of-page"><i class="fa fa-arrow-up"></i> back to top</a> </div> <!-- end anchor --> <!-- begin CTA --> <hr class="whitespace"> <header class="marketing-hero" style="background-image: url('/img/bg/omero-omero.jpg');"> <div class="row"> <div class="small-12 columns bg-image-text-container-cta text-center"> <p class="hero-subheader">Get started working with your images now</p> <a href="/omero/downloads/" class="large btn-red button sites-button" style="text-shadow: none;">Download OMERO</a> </div> </div> </header> <!-- end CTA --> <div id="footer" class="callout large secondary"> <div class="row"> <div class="small-12 medium-4 columns"> <div class="medium-4"><a href="/index.html"><img class="footer-logo" src="/img/logos/ome-main-nav.svg" alt="OME logo" /></a></div> <p>&copy; 2005-2024 University of Dundee &amp; Open Microscopy Environment. <a href="https://creativecommons.org/licenses/by/4.0/" target="_blank">Creative Commons Attribution 4.0 International License</a></p> <p>OME source code is available under the <a href="https://www.gnu.org/copyleft/gpl.html">GNU General public license</a> or more permissive open source licenses, or through commercial license from <a href="https://www.glencoesoftware.com" target="_blank">Glencoe Software Inc.</a><br/>OME, Bio-Formats, OMERO, IDR and their associated logos are trademarks of <a href="https://www.glencoesoftware.com" target="_blank">Glencoe Software Inc.</a>, which holds these marks to protect them on behalf of the OME community.</p> <p class="tiny-print" style="float:left;">[ <a href="/site-map/">Site Map</a> ]</p> <p class="tiny-print" style="float:right;">Version: 2024.11.21</p> </div> <div class="medium-2 columns"> <h6>Learn About Us</h6> <ul class="menu vertical"> <li><a href="/about/">Who We Are</a></li> <li><a href="/teams/">Our Team</a></li> <li><a href="/explore/">What We Can Do</a></li> <li><a href="/news/">What We鈥檙e Up To</a></li> <li><a href="/events/ome-community-meeting-2024/">OME 2024</a></li> <li class="hide-for-large-only">&nbsp;</li> </ul> </div> <div class="medium-2 columns"> <h6>Try Our Products</h6> <ul class="menu vertical"> <li><a href="/omero/downloads/">OMERO <span class="badge">Download</span></a></li> <li><a href="/bio-formats/downloads">Bio-Formats <span class="badge">Download</span></a></li> <li><a href="/ome-files/downloads">OME Files <span class="badge">Download</span></a></li> <li class="hide-for-large-only">&nbsp;</li> </ul> </div> <div class="medium-2 columns"> <h6>Knowledge Base</h6> <ul class="menu vertical"> <li><a href="/support/">Support</a></li> <li><a href="/docs/">Documentation</a></li> <li><a href="https://omero-guides.readthedocs.io/">User Guides</a></li> <li><a href="https://www.openmicroscopy.org/forums">Forum</a></li> <li><a href="https://www.openmicroscopy.org/security/advisories/">Security Advisories</a></li> <li class="hide-for-large-only">&nbsp;</li> </ul> </div> <div class="medium-2 columns end"> <h6>OME Public</h6> <ul class="menu vertical"> <li><a href="https://twitter.com/openmicroscopy" target="_blank"><i class="fa fa-fw fa-twitter"></i> Twitter</a></li> <li><a href="https://www.linkedin.com/company/ome---open-microscopy-environment" target="_blank"><i class="fa fa-fw fa-linkedin"></i> LinkedIn</a></li> <li><a href="https://www.facebook.com/openmicroscopy" target="_blank"><i class="fa fa-fw fa-facebook"></i> Facebook</a></li> <!-- <li><a href="http://webchat.freenode.net/?channels=%23ome&amp;uio=d4" target="_blank"><i class="fa fa-fw fa-comments"></i> IRC</a></li> --> <li><a href="/on-the-web/" target="_blank"><i class="fa fa-globe"></i> On the Web</a></li> <li class="hide-for-large-only">&nbsp;</li> </ul> </div> </div> </div> <script src="https://code.jquery.com/jquery-2.1.4.min.js"></script> <script src="/js/vendor/jquery.js"></script> <script src="/js/vendor/what-input.js"></script> <script src="/js/vendor/foundation.js"></script> <script src="/js/app.js"></script> <script src="/js/responsive-tables.js"></script> <script> $(document).foundation(); 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