CINXE.COM
eF-site
<!doctype html public "-//W3C//DTD HTML 4.0 Transitional//EN" "http://www.w3.org/TR/REC-html40/loose.dtd"> <html> <head> <meta http-equiv="content-type" content="text/html; charset=iso-8859-1"> <title>eF-site</title> <script language="javascript"> <!-- function check(){ if(document.keyword.initial.value == ""){ return false; } else{ return true; } } //--> </script> <style type="text/css"><!-- .notice { font-weight:bold; color:red; margin-left:4em; } --> </style> </head> <body bgcolor="#ffffff" text="#000000" link="#0000ff" vlink="#9966ff" alink="#00ffff"> <table width="800" border="0"> <tr> <td width="60"></td> <td width="160" align="center"> <a href="https://pdbj.org/" style="text-decoration:none;"> <img src="img/pdbj21.gif" width=100> </a> </td> <td width="540" height="140"> <img src="./img/title.jpg" width=400> </td> <td width="40"></td> </tr> <tr> <td width="60"></td> <td colspan="2" align="center"> <b> <a href="/eF-site/wiki/EF-site_Help">About eF-site</a> | <a href="./tools.html">Tools</a> | <a href="./references.html">References</a> | <a href="./links.html">Links</a> | <a href="./acknowledgements.html">Acknowledgements</a> | <a href="./servlet/Feedback">Feedback</a> </b> </td> <td width="40"></td> </tr> </table> <br> <br> <table width="800" border="0"> <tr> <td width="60"></td> <td> <font size="+1"><b> 1220650 Entries, Last Update: 27-Nov-2024 </b></font> </td> <td width="40"></td> </tr> </table> <br> <br> <form name="keyword" action="./servlet/Search" method="post" onSubmit="return check()"> <table width="800" border="0"> <tr> <td width="60"></td> <td width="175"></td> <td width="350"><b>Keyword Search</b></td> <td width="175"> <td width="40"></td> </tr> <tr> <td></td> <td></td> <td valign="top"> <table width="350" border="0"> <tr> <td align="center"> <input type="text" size="40" name="initial"> </td> </tr> <tr> <td> <font size="-1"> <input type="checkbox" name="type" value="pdb">PDB code only <input type="radio" name="logic" value="and" checked>and <input type="radio" name="logic" value="or">or </font> </td> </tr> <tr> <td align="right"> <input name="name" type="submit" value="Search"> <input name="name" type="reset" value="Reset"> </td> </tr> </table> <input type="hidden" name="start" value="1"> </td> <td></td> <td></td> </tr> </table> </form> <br> <table width="800" border="0"> <tr> <td width="60"></td> <td width="700" colspan="3"> <b>Examples of molecular surface</b> </td> <td width="40"></td> </tr> </table> <table width="800" border="0"> <tr> <td width="60"></td> <td align="center" colspan="3"> <img src="img/top-1tup.png" alt="PDB:1tup" width="680" height="300"/> <!-- <object classid="clsid:D27CDB6E-AE6D-11cf-96B8-444553540000" codebase="http://download.macromedia.com/pub/shockwave/cabs/flash/swflash.cab#version=6,0,0,0" width="680" height="300"> <param name="movie" value="./img/top-1tup.swf"> <param name="quality" value="high"> <param name="bgcolor" value="#ffffff"> <embed src="./img/top-1tup.swf" quality="high" bgcolor="#ffffff" width="680" height="300" type="application/x-shockwave-flash" pluginspage="http://www.macromedia.com/go/getflashplayer"> </embed> </object> --> </td> <td width="40"></td> </tr> <tr> <td width="60"></td> <td width="30"></td> <td> For all pdb entries, molecular surfaces are generated for individual subunits of proteins and the complex of proteins. In addition, when double strands DNA is included in the entry, a molecular surface for each dsDNA is also stored. </td> <td width="30"></td> <td width="40"></td> </tr> <tr> <td width="60"></td> <td align="center" colspan="3"> <img src="img/top-1a1t.png" alt="PDB:1a1t" width="680" height="200"/> <!-- <object classid="clsid:D27CDB6E-AE6D-11cf-96B8-444553540000" codebase="http://download.macromedia.com/pub/shockwave/cabs/flash/swflash.cab#version=6,0,0,0" width="680" height="200"> <param name="movie" value="./img/top-1a1t.swf"> <param name="quality" value="high"> <param name="bgcolor" value="#ffffff"> <embed src="./img/top-1a1t.swf" quality="high" bgcolor="#ffffff" width="680" height="200" type="application/x-shockwave-flash" pluginspage="http://www.macromedia.com/go/getflashplayer"> </embed> </object> --> </td> <td width="40"></td> </tr> <td width="60"></td> <td width="30"></td> <td> When multiple models are stored in PDB, molecular surfaces for all the models are generated. </td> <td width="30"></td> <td width="40"></td> </tr> </table> <br> <br> <table width="800" border="0"> <tr> <td width="60"></td> <td width="700"> <font size="-1"> <i> Constructed by Kinoshita, Kengo (The Institute of Medical Science, The University of Tokyo) and Nakamura, Haruki (Institute for Protein Research, Osaka University), collaborated with Information and Mathematical Science Laboratory, Inc. The development of this database is supported by <a href="http://biosciencedbc.jp/" onclick="window.open(this.href,'jstnbdc');return false">JST-NBDC</a> (JPMJND2205).<br> </i> </font> </td> <td width="40"></td> </tr> <tr> <td width="60"></td> <td width="700"><br><hr size="1"></td> <td width="40"></td> </tr> </table> <table width="800" border="0"> <tr> <td width="60"></td> <td width="700"> <b>Related sites</b> </td> <td width="40"></td> </tr> </table> <table width="800" border="0"> <tr> <td width="60"></td> <td width="110"> <a href="/eF-surf/" style="text-decoration:none;"> <img src="img/title_efsurf_small.jpg" width=100> </a> </td> <td width="590" valign="center"> Web server to calculate the molecular surface and the electrostatic potential for the user uploaded file. </td> <td width="40"></td> </tr> <tr> <td width="60"></td> <td width="110"> <a href="/eF-seek/" style="text-decoration:none;"> <img src="img/title_efseek_small.jpg" width=100> </a> </td> <td width="590" valign="center"> Structure-based function prediction server. </td> <td width="40"></td> </tr> </table> </body> </html>