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I have participated in 38 R<br /><div class="js-profile-less-about u-linkUnstyled u-tcGrayDarker u-textDecorationUnderline u-displayNone">less</div></div></div><div class="ri-section"><div class="ri-section-header"><span>Interests</span></div><div class="ri-tags-container"><a data-click-track="profile-user-info-expand-research-interests" data-has-card-for-ri-list="29194678" href="https://www.academia.edu/Documents/in/Theories_Of_Truth"><div id="js-react-on-rails-context" style="display:none" data-rails-context="{"inMailer":false,"i18nLocale":"en","i18nDefaultLocale":"en","href":"https://usc-es.academia.edu/JesusRomalde","location":"/JesusRomalde","scheme":"https","host":"usc-es.academia.edu","port":null,"pathname":"/JesusRomalde","search":null,"httpAcceptLanguage":null,"serverSide":false}"></div> <div class="js-react-on-rails-component" style="display:none" data-component-name="Pill" data-props="{"color":"gray","children":["Theories Of Truth"]}" data-trace="false" 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Posthumanism"]}" data-trace="false" data-dom-id="Pill-react-component-64d48d9b-ab03-4c5f-aef1-d0635f249629"></div> <div id="Pill-react-component-64d48d9b-ab03-4c5f-aef1-d0635f249629"></div> </a></div></div><div class="external-links-container"><ul class="profile-links new-profile js-UserInfo-social"><li class="profile-profiles js-social-profiles-container"><i class="fa fa-spin fa-spinner"></i></li></ul></div></div></div><div class="right-panel-container"><div class="user-content-wrapper"><div class="uploads-container" id="social-redesign-work-container"><div class="upload-header"><h2 class="ds2-5-heading-sans-serif-xs">Uploads</h2></div><div class="documents-container backbone-social-profile-documents" style="width: 100%;"><div class="u-taCenter"></div><div class="profile--tab_content_container js-tab-pane tab-pane active" id="all"><div class="profile--tab_heading_container js-section-heading" data-section="Papers" id="Papers"><h3 class="profile--tab_heading_container">Papers by Jesus Romalde</h3></div><div class="js-work-strip profile--work_container" data-work-id="124133044"><div class="profile--work_thumbnail hidden-xs"><a class="js-work-strip-work-link" data-click-track="profile-work-strip-thumbnail" href="https://www.academia.edu/124133044/Co_existence_of_two_Yersinia_ruckeri_biotypes_and_serotype_O1a_retrieved_from_rainbow_trout_Oncorhynchus_mykiss_farmed_in_Puno_Peru"><img alt="Research paper thumbnail of Co‐existence of two Yersinia ruckeri biotypes and serotype O1a retrieved from rainbow trout (Oncorhynchus mykiss) farmed in Puno, Peru" class="work-thumbnail" src="https://a.academia-assets.com/images/blank-paper.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" href="https://www.academia.edu/124133044/Co_existence_of_two_Yersinia_ruckeri_biotypes_and_serotype_O1a_retrieved_from_rainbow_trout_Oncorhynchus_mykiss_farmed_in_Puno_Peru">Co‐existence of two Yersinia ruckeri biotypes and serotype O1a retrieved from rainbow trout (Oncorhynchus mykiss) farmed in Puno, Peru</a></div><div class="wp-workCard_item"><span>Journal of Fish Diseases</span></div><div class="wp-workCard_item"><span class="js-work-more-abstract-truncated">Yersinia ruckeri causes important economic losses for rainbow trout (Oncorhynchus mykiss) farms w...</span><a class="js-work-more-abstract" data-broccoli-component="work_strip.more_abstract" data-click-track="profile-work-strip-more-abstract" href="javascript:;"><span> more </span><span><i class="fa fa-caret-down"></i></span></a><span class="js-work-more-abstract-untruncated hidden">Yersinia ruckeri causes important economic losses for rainbow trout (Oncorhynchus mykiss) farms worldwide. This bacterial disease is likely the most common among trout in Peru; however, no commercial vaccine is available nationally, which is, in part, due to a lack of information on the bacterium. The aim of the current study was to characterize 29 Y. ruckeri isolates sampled from seven cage‐reared farms in the Puno Region, the focal point for aquaculture activities in Peru. For this, samples were taken from fish with clinical signs (i.e. haemorrhages, uni‐ or bilateral exophthalmia, hyphaemia and/or melanosis). Notable among our findings was the existence of both Y. ruckeri biotype 1 (9 isolates) and biotype 2 (20 isolates; negative for sorbitol and Tween 80). The isolates further differed in API profiles 5307100 (21 isolates), 1307100 (4 isolates), 1305100 (2 isolates), 1307120 (1 isolate) and 5305100 (1 isolate), with the main differences being in the tests for lysine decarboxyla...</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><span class="wp-workCard--action visible-if-viewed-by-owner inline-block" style="display: none;"><span class="js-profile-work-strip-edit-button-wrapper profile-work-strip-edit-button-wrapper" data-work-id="124133044"><a class="js-profile-work-strip-edit-button" tabindex="0"><span><i class="fa fa-pencil"></i></span><span>Edit</span></a></span></span><span id="work-strip-rankings-button-container"></span></div><div class="wp-workCard_item wp-workCard--stats"><span><span><span class="js-view-count view-count u-mr2x" data-work-id="124133044"><i class="fa fa-spinner fa-spin"></i></span><script>$(function () { var workId = 124133044; window.Academia.workViewCountsFetcher.queue(workId, function (count) { var description = window.$h.commaizeInt(count) + " " + window.$h.pluralize(count, 'View'); $(".js-view-count[data-work-id=124133044]").text(description); $(".js-view-count[data-work-id=124133044]").attr('title', description).tooltip(); }); });</script></span></span><span><span class="percentile-widget hidden"><span class="u-mr2x work-percentile"></span></span><script>$(function () { var workId = 124133044; window.Academia.workPercentilesFetcher.queue(workId, function (percentileText) { var container = $(".js-work-strip[data-work-id='124133044']"); container.find('.work-percentile').text(percentileText.charAt(0).toUpperCase() + percentileText.slice(1)); container.find('.percentile-widget').show(); container.find('.percentile-widget').removeClass('hidden'); }); });</script></span><span><script>$(function() { new Works.PaperRankView({ workId: 124133044, container: "", }); });</script></span></div><div id="work-strip-premium-row-container"></div></div></div><script> require.config({ waitSeconds: 90 })(["https://a.academia-assets.com/assets/wow_profile-f77ea15d77ce96025a6048a514272ad8becbad23c641fc2b3bd6e24ca6ff1932.js","https://a.academia-assets.com/assets/work_edit-ad038b8c047c1a8d4fa01b402d530ff93c45fee2137a149a4a5398bc8ad67560.js"], function() { // from javascript_helper.rb var dispatcherData = {} if (false){ window.WowProfile.dispatcher = window.WowProfile.dispatcher || _.clone(Backbone.Events); dispatcherData = { dispatcher: window.WowProfile.dispatcher, downloadLinkId: "-1" } } $('.js-work-strip[data-work-id=124133044]').each(function() { if (!$(this).data('initialized')) { new WowProfile.WorkStripView({ el: this, workJSON: {"id":124133044,"title":"Co‐existence of two Yersinia ruckeri biotypes and serotype O1a retrieved from rainbow trout (Oncorhynchus mykiss) farmed in Puno, Peru","translated_title":"","metadata":{"abstract":"Yersinia ruckeri causes important economic losses for rainbow trout (Oncorhynchus mykiss) farms worldwide. This bacterial disease is likely the most common among trout in Peru; however, no commercial vaccine is available nationally, which is, in part, due to a lack of information on the bacterium. The aim of the current study was to characterize 29 Y. ruckeri isolates sampled from seven cage‐reared farms in the Puno Region, the focal point for aquaculture activities in Peru. For this, samples were taken from fish with clinical signs (i.e. haemorrhages, uni‐ or bilateral exophthalmia, hyphaemia and/or melanosis). Notable among our findings was the existence of both Y. ruckeri biotype 1 (9 isolates) and biotype 2 (20 isolates; negative for sorbitol and Tween 80). The isolates further differed in API profiles 5307100 (21 isolates), 1307100 (4 isolates), 1305100 (2 isolates), 1307120 (1 isolate) and 5305100 (1 isolate), with the main differences being in the tests for lysine decarboxyla...","publisher":"Wiley","publication_name":"Journal of Fish Diseases"},"translated_abstract":"Yersinia ruckeri causes important economic losses for rainbow trout (Oncorhynchus mykiss) farms worldwide. This bacterial disease is likely the most common among trout in Peru; however, no commercial vaccine is available nationally, which is, in part, due to a lack of information on the bacterium. The aim of the current study was to characterize 29 Y. ruckeri isolates sampled from seven cage‐reared farms in the Puno Region, the focal point for aquaculture activities in Peru. For this, samples were taken from fish with clinical signs (i.e. haemorrhages, uni‐ or bilateral exophthalmia, hyphaemia and/or melanosis). Notable among our findings was the existence of both Y. ruckeri biotype 1 (9 isolates) and biotype 2 (20 isolates; negative for sorbitol and Tween 80). 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$(this).data('initialized', true); } }); $a.trackClickSource(".js-work-strip-work-link", "profile_work_strip") }); </script> <div class="js-work-strip profile--work_container" data-work-id="124133042"><div class="profile--work_thumbnail hidden-xs"><a class="js-work-strip-work-link" data-click-track="profile-work-strip-thumbnail" href="https://www.academia.edu/124133042/A_novel_O_serotype_in_Tenacibaculum_maritimum_strains_isolated_from_cultured_sole_Solea_senegalensis_"><img alt="Research paper thumbnail of A novel O-serotype in Tenacibaculum maritimum strains isolated from cultured sole (Solea senegalensis)" class="work-thumbnail" src="https://attachments.academia-assets.com/118411986/thumbnails/1.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" href="https://www.academia.edu/124133042/A_novel_O_serotype_in_Tenacibaculum_maritimum_strains_isolated_from_cultured_sole_Solea_senegalensis_">A novel O-serotype in Tenacibaculum maritimum strains isolated from cultured sole (Solea senegalensis)</a></div><div class="wp-workCard_item"><span>Bull. Eur. Assoc. 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src="https://attachments.academia-assets.com/110242897/thumbnails/1.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" href="https://www.academia.edu/113228152/Extended_spectrum_%CE%B2_lactamase_and_carbapenemase_genes_are_substantially_and_sequentially_reduced_during_conveyance_and_treatment_of_urban_sewage">Extended spectrum β-lactamase and carbapenemase genes are substantially and sequentially reduced during conveyance and treatment of urban sewage</a></div><div class="wp-workCard_item"><span>bioRxiv (Cold Spring Harbor Laboratory)</span><span>, Nov 12, 2020</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><a id="4f6fa00fefcce9f198e72043e4bfd56d" class="wp-workCard--action" rel="nofollow" data-click-track="profile-work-strip-download" 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quantitative observations of antibiotic resistance genes (ARGs) in urban water systems (UWSs) are lacking. 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$(this).data('initialized', true); } }); $a.trackClickSource(".js-work-strip-work-link", "profile_work_strip") }); </script> <div class="js-work-strip profile--work_container" data-work-id="113228151"><div class="profile--work_thumbnail hidden-xs"><a class="js-work-strip-work-link" data-click-track="profile-work-strip-thumbnail" href="https://www.academia.edu/113228151/Experimental_Pseudomonas_anguilliseptica_infection_in_turbot_Psetta_maxima_L_a_histopathological_and_immunohistochemical_study"><img alt="Research paper thumbnail of Experimental Pseudomonas anguilliseptica infection in turbot Psetta maxima (L.): a histopathological and immunohistochemical study" class="work-thumbnail" src="https://attachments.academia-assets.com/110242844/thumbnails/1.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" href="https://www.academia.edu/113228151/Experimental_Pseudomonas_anguilliseptica_infection_in_turbot_Psetta_maxima_L_a_histopathological_and_immunohistochemical_study">Experimental Pseudomonas anguilliseptica infection in turbot Psetta maxima (L.): a histopathological and immunohistochemical study</a></div><div class="wp-workCard_item"><span>European Journal of Histochemistry</span><span>, Aug 17, 2009</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><a id="390426458d50f28f1f76b92529bd0a30" class="wp-workCard--action" rel="nofollow" data-click-track="profile-work-strip-download" data-download="{"attachment_id":110242844,"asset_id":113228151,"asset_type":"Work","button_location":"profile"}" href="https://www.academia.edu/attachments/110242844/download_file?st=MTczMjQxOTI1Niw4LjIyMi4yMDguMTQ2&s=profile"><span><i class="fa fa-arrow-down"></i></span><span>Download</span></a><span class="wp-workCard--action visible-if-viewed-by-owner inline-block" style="display: none;"><span class="js-profile-work-strip-edit-button-wrapper profile-work-strip-edit-button-wrapper" data-work-id="113228151"><a class="js-profile-work-strip-edit-button" tabindex="0"><span><i class="fa fa-pencil"></i></span><span>Edit</span></a></span></span><span id="work-strip-rankings-button-container"></span></div><div class="wp-workCard_item wp-workCard--stats"><span><span><span class="js-view-count view-count u-mr2x" data-work-id="113228151"><i class="fa fa-spinner fa-spin"></i></span><script>$(function () { var workId = 113228151; window.Academia.workViewCountsFetcher.queue(workId, function (count) { var description = window.$h.commaizeInt(count) + " " + window.$h.pluralize(count, 'View'); $(".js-view-count[data-work-id=113228151]").text(description); $(".js-view-count[data-work-id=113228151]").attr('title', description).tooltip(); }); });</script></span></span><span><span class="percentile-widget hidden"><span class="u-mr2x work-percentile"></span></span><script>$(function () { var workId = 113228151; window.Academia.workPercentilesFetcher.queue(workId, function (percentileText) { var container = $(".js-work-strip[data-work-id='113228151']"); container.find('.work-percentile').text(percentileText.charAt(0).toUpperCase() + percentileText.slice(1)); container.find('.percentile-widget').show(); container.find('.percentile-widget').removeClass('hidden'); }); });</script></span><span><script>$(function() { new Works.PaperRankView({ workId: 113228151, container: "", }); });</script></span></div><div id="work-strip-premium-row-container"></div></div></div><script> require.config({ waitSeconds: 90 })(["https://a.academia-assets.com/assets/wow_profile-f77ea15d77ce96025a6048a514272ad8becbad23c641fc2b3bd6e24ca6ff1932.js","https://a.academia-assets.com/assets/work_edit-ad038b8c047c1a8d4fa01b402d530ff93c45fee2137a149a4a5398bc8ad67560.js"], function() { // from javascript_helper.rb var dispatcherData = {} if (true){ window.WowProfile.dispatcher = window.WowProfile.dispatcher || _.clone(Backbone.Events); dispatcherData = { dispatcher: window.WowProfile.dispatcher, downloadLinkId: "390426458d50f28f1f76b92529bd0a30" } } $('.js-work-strip[data-work-id=113228151]').each(function() { if (!$(this).data('initialized')) { new WowProfile.WorkStripView({ el: this, workJSON: {"id":113228151,"title":"Experimental Pseudomonas anguilliseptica infection in turbot Psetta maxima (L.): a histopathological and immunohistochemical study","translated_title":"","metadata":{"publisher":"PAGEPress (Italy)","grobid_abstract":"Experimental infection with Pseudomonas anguilliseptica was performed both by intraperitoneal (i.p.) and bath route on juvenile turbot (Psetta maxima) in order to evaluate the pathology induced. Turbot was found to be sensitive to i.p. challenge (1.7x10 6 CFU/fish) but no to bath exposure. The i.p. challenge induced septicaemic infection and mortality. Externally, moribund fish showed distended abdomen and pale areas at day 9. The gross pathological internal signs present were abundant ascitic fluid in the peritoneal cavity, pale and enlarged spleen, pale and friable liver, and congestive and dilated gut with yellowish exudates. On histopathological examination, bacterial invasion was common in all the tissues studied but the most prominent pathological changes were observed in gut, spleen and kidney after 7 day with features of necrosis. The immunohistochemical findings support the widespread localization of the bacteria after the i.p. injection since the P. anguilliseptica was detected in spleen from day 1 post injection, in liver, kidney and gut from day 4, in muscle from day 7 and in brain from day 9. 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$(this).data('initialized', true); } }); $a.trackClickSource(".js-work-strip-work-link", "profile_work_strip") }); </script> <div class="js-work-strip profile--work_container" data-work-id="113228143"><div class="profile--work_thumbnail hidden-xs"><a class="js-work-strip-work-link" data-click-track="profile-work-strip-thumbnail" href="https://www.academia.edu/113228143/Nearly_Complete_Genome_Sequence_of_Raoultella_ornithinolytica_Strain_MQB_Silv_108_Carrying_an_Uncommon_Extended_Spectrum_%CE%B2_Lactamase_like_bla_BEL_Gene"><img alt="Research paper thumbnail of Nearly Complete Genome Sequence of Raoultella ornithinolytica Strain MQB_Silv_108, Carrying an Uncommon Extended-Spectrum-β-Lactamase-like bla BEL Gene" class="work-thumbnail" src="https://attachments.academia-assets.com/110242895/thumbnails/1.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" href="https://www.academia.edu/113228143/Nearly_Complete_Genome_Sequence_of_Raoultella_ornithinolytica_Strain_MQB_Silv_108_Carrying_an_Uncommon_Extended_Spectrum_%CE%B2_Lactamase_like_bla_BEL_Gene">Nearly Complete Genome Sequence of Raoultella ornithinolytica Strain MQB_Silv_108, Carrying an Uncommon Extended-Spectrum-β-Lactamase-like bla BEL Gene</a></div><div class="wp-workCard_item"><span>Microbiology Resource Announcements</span></div><div class="wp-workCard_item"><span class="js-work-more-abstract-truncated">Raoultella ornithinolytica has become increasingly important in human diseases. Here, we report t...</span><a class="js-work-more-abstract" data-broccoli-component="work_strip.more_abstract" data-click-track="profile-work-strip-more-abstract" href="javascript:;"><span> more </span><span><i class="fa fa-caret-down"></i></span></a><span class="js-work-more-abstract-untruncated hidden">Raoultella ornithinolytica has become increasingly important in human diseases. Here, we report the nearly complete genome sequence of a multidrug-resistant strain, R. ornithinolytica MQB_Silv_108, which was isolated from the effluent from a domestic wastewater treatment plant in Spain. Therefore, its release into the environment poses a possible exposure risk for humans and animals.</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><a id="4598bfc32eb46905e502db25534bc721" class="wp-workCard--action" rel="nofollow" data-click-track="profile-work-strip-download" data-download="{"attachment_id":110242895,"asset_id":113228143,"asset_type":"Work","button_location":"profile"}" href="https://www.academia.edu/attachments/110242895/download_file?st=MTczMjQxOTI1Niw4LjIyMi4yMDguMTQ2&s=profile"><span><i class="fa fa-arrow-down"></i></span><span>Download</span></a><span class="wp-workCard--action visible-if-viewed-by-owner inline-block" style="display: none;"><span class="js-profile-work-strip-edit-button-wrapper profile-work-strip-edit-button-wrapper" data-work-id="113228143"><a class="js-profile-work-strip-edit-button" tabindex="0"><span><i class="fa fa-pencil"></i></span><span>Edit</span></a></span></span><span id="work-strip-rankings-button-container"></span></div><div class="wp-workCard_item wp-workCard--stats"><span><span><span class="js-view-count view-count u-mr2x" data-work-id="113228143"><i class="fa fa-spinner fa-spin"></i></span><script>$(function () { var workId = 113228143; window.Academia.workViewCountsFetcher.queue(workId, function (count) { var description = window.$h.commaizeInt(count) + " " + window.$h.pluralize(count, 'View'); $(".js-view-count[data-work-id=113228143]").text(description); $(".js-view-count[data-work-id=113228143]").attr('title', description).tooltip(); }); });</script></span></span><span><span class="percentile-widget hidden"><span class="u-mr2x work-percentile"></span></span><script>$(function () { var workId = 113228143; window.Academia.workPercentilesFetcher.queue(workId, function (percentileText) { var container = $(".js-work-strip[data-work-id='113228143']"); container.find('.work-percentile').text(percentileText.charAt(0).toUpperCase() + percentileText.slice(1)); container.find('.percentile-widget').show(); container.find('.percentile-widget').removeClass('hidden'); }); });</script></span><span><script>$(function() { new Works.PaperRankView({ workId: 113228143, container: "", }); });</script></span></div><div id="work-strip-premium-row-container"></div></div></div><script> require.config({ waitSeconds: 90 })(["https://a.academia-assets.com/assets/wow_profile-f77ea15d77ce96025a6048a514272ad8becbad23c641fc2b3bd6e24ca6ff1932.js","https://a.academia-assets.com/assets/work_edit-ad038b8c047c1a8d4fa01b402d530ff93c45fee2137a149a4a5398bc8ad67560.js"], function() { // from javascript_helper.rb var dispatcherData = {} if (true){ window.WowProfile.dispatcher = window.WowProfile.dispatcher || _.clone(Backbone.Events); dispatcherData = { dispatcher: window.WowProfile.dispatcher, downloadLinkId: "4598bfc32eb46905e502db25534bc721" } } $('.js-work-strip[data-work-id=113228143]').each(function() { if (!$(this).data('initialized')) { new WowProfile.WorkStripView({ el: this, workJSON: {"id":113228143,"title":"Nearly Complete Genome Sequence of Raoultella ornithinolytica Strain MQB_Silv_108, Carrying an Uncommon Extended-Spectrum-β-Lactamase-like bla BEL Gene","translated_title":"","metadata":{"abstract":"Raoultella ornithinolytica has become increasingly important in human diseases. 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Therefore, its release into the environment poses a possible exposure risk for humans and animals.","internal_url":"https://www.academia.edu/113228143/Nearly_Complete_Genome_Sequence_of_Raoultella_ornithinolytica_Strain_MQB_Silv_108_Carrying_an_Uncommon_Extended_Spectrum_%CE%B2_Lactamase_like_bla_BEL_Gene","translated_internal_url":"","created_at":"2024-01-09T08:19:24.798-08:00","preview_url":null,"current_user_can_edit":null,"current_user_is_owner":null,"owner_id":29194678,"coauthors_can_edit":true,"document_type":"paper","co_author_tags":[],"downloadable_attachments":[{"id":110242895,"title":"","file_type":"pdf","scribd_thumbnail_url":"https://attachments.academia-assets.com/110242895/thumbnails/1.jpg","file_name":"fulltext.pdf","download_url":"https://www.academia.edu/attachments/110242895/download_file?st=MTczMjQxOTI1Niw4LjIyMi4yMDguMTQ2&","bulk_download_file_name":"Nearly_Complete_Genome_Sequence_of_Raoul.pdf","bulk_download_url":"https://d1wqtxts1xzle7.cloudfront.net/110242895/fulltext-libre.pdf?1704818772=\u0026response-content-disposition=attachment%3B+filename%3DNearly_Complete_Genome_Sequence_of_Raoul.pdf\u0026Expires=1731455219\u0026Signature=aK-hfa-Y56tDcnoH-W2QQOGb12KetFOkhkXWBc2OKr1bI8JLjxApqFcmebp~rme6A7GCM-xUrU4znk4WLfbvMFkCAmTK1TjZWVF0PwbJl8plrUPvDRON4cdjRQa7XFutOUlboysTvtSwYdp5QtsELtQ7bEac7jKv~bLsiMGlb7UBURq-yq1zWPYU~b9BvBlqDfvvJxvO-fzWQaZpGR9AgnUeFvB7v4CZHAS-mFXsVaKAhnjZqjo-V4DAe-NizunBg9g1tu0cYVQsLI3gogen066DalYB5sy-tlVNtlh2jEci9U0v-6xzFh6BcZtJLiQIefrP7~rwlq4M4jQ4FCUfZg__\u0026Key-Pair-Id=APKAJLOHF5GGSLRBV4ZA"}],"slug":"Nearly_Complete_Genome_Sequence_of_Raoultella_ornithinolytica_Strain_MQB_Silv_108_Carrying_an_Uncommon_Extended_Spectrum_β_Lactamase_like_bla_BEL_Gene","translated_slug":"","page_count":3,"language":"en","content_type":"Work","owner":{"id":29194678,"first_name":"Jesus","middle_initials":null,"last_name":"Romalde","page_name":"JesusRomalde","domain_name":"usc-es","created_at":"2015-04-07T10:49:28.579-07:00","display_name":"Jesus Romalde","url":"https://usc-es.academia.edu/JesusRomalde"},"attachments":[{"id":110242895,"title":"","file_type":"pdf","scribd_thumbnail_url":"https://attachments.academia-assets.com/110242895/thumbnails/1.jpg","file_name":"fulltext.pdf","download_url":"https://www.academia.edu/attachments/110242895/download_file?st=MTczMjQxOTI1Niw4LjIyMi4yMDguMTQ2&","bulk_download_file_name":"Nearly_Complete_Genome_Sequence_of_Raoul.pdf","bulk_download_url":"https://d1wqtxts1xzle7.cloudfront.net/110242895/fulltext-libre.pdf?1704818772=\u0026response-content-disposition=attachment%3B+filename%3DNearly_Complete_Genome_Sequence_of_Raoul.pdf\u0026Expires=1731455219\u0026Signature=aK-hfa-Y56tDcnoH-W2QQOGb12KetFOkhkXWBc2OKr1bI8JLjxApqFcmebp~rme6A7GCM-xUrU4znk4WLfbvMFkCAmTK1TjZWVF0PwbJl8plrUPvDRON4cdjRQa7XFutOUlboysTvtSwYdp5QtsELtQ7bEac7jKv~bLsiMGlb7UBURq-yq1zWPYU~b9BvBlqDfvvJxvO-fzWQaZpGR9AgnUeFvB7v4CZHAS-mFXsVaKAhnjZqjo-V4DAe-NizunBg9g1tu0cYVQsLI3gogen066DalYB5sy-tlVNtlh2jEci9U0v-6xzFh6BcZtJLiQIefrP7~rwlq4M4jQ4FCUfZg__\u0026Key-Pair-Id=APKAJLOHF5GGSLRBV4ZA"}],"research_interests":[{"id":159,"name":"Microbiology","url":"https://www.academia.edu/Documents/in/Microbiology"},{"id":94123,"name":"Multidrug Resistance","url":"https://www.academia.edu/Documents/in/Multidrug_Resistance"},{"id":176486,"name":"Genome","url":"https://www.academia.edu/Documents/in/Genome"},{"id":320555,"name":"Whole Genome Sequencing","url":"https://www.academia.edu/Documents/in/Whole_Genome_Sequencing"},{"id":732028,"name":"Genome sequence","url":"https://www.academia.edu/Documents/in/Genome_sequence"},{"id":2423737,"name":"Raoultella ornithinolytica","url":"https://www.academia.edu/Documents/in/Raoultella_ornithinolytica"}],"urls":[{"id":38388396,"url":"https://journals.asm.org/doi/pdf/10.1128/mra.01012-22"}]}, dispatcherData: dispatcherData }); $(this).data('initialized', true); } }); $a.trackClickSource(".js-work-strip-work-link", "profile_work_strip") }); </script> <div class="js-work-strip profile--work_container" data-work-id="113228141"><div class="profile--work_thumbnail hidden-xs"><a class="js-work-strip-work-link" data-click-track="profile-work-strip-thumbnail" href="https://www.academia.edu/113228141/First_description_of_Yersinia_ruckeri_serotype_O2_in_Spain"><img alt="Research paper thumbnail of First description of Yersinia ruckeri serotype O2 in Spain" class="work-thumbnail" src="https://attachments.academia-assets.com/110242840/thumbnails/1.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" href="https://www.academia.edu/113228141/First_description_of_Yersinia_ruckeri_serotype_O2_in_Spain">First description of Yersinia ruckeri serotype O2 in Spain</a></div><div class="wp-workCard_item"><span>Bulletin of The European Association of Fish Pathologists</span><span>, 2003</span></div><div class="wp-workCard_item"><span class="js-work-more-abstract-truncated">Yersinia ruckeri was isolated from diseased unvaccinated rainbow trout obtained from a farm in wh...</span><a class="js-work-more-abstract" data-broccoli-component="work_strip.more_abstract" data-click-track="profile-work-strip-more-abstract" href="javascript:;"><span> more </span><span><i class="fa fa-caret-down"></i></span></a><span class="js-work-more-abstract-untruncated hidden">Yersinia ruckeri was isolated from diseased unvaccinated rainbow trout obtained from a farm in which vaccination against enteric redmouth disease (ERM) has been systematically performed for more than 10 years. Affected fish presented typical signs of yersiniosis including exophthalmia and eye haemorrhages. Serological characterization of the isolate demonstrated that it belongs to the serotype O2b of this bacterial pathogen, which was never before described in Spain.</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><a id="cd5e529b993ab80e10e5e4f4d0ca22e7" class="wp-workCard--action" rel="nofollow" data-click-track="profile-work-strip-download" data-download="{"attachment_id":110242840,"asset_id":113228141,"asset_type":"Work","button_location":"profile"}" href="https://www.academia.edu/attachments/110242840/download_file?st=MTczMjQxOTI1Niw4LjIyMi4yMDguMTQ2&s=profile"><span><i class="fa fa-arrow-down"></i></span><span>Download</span></a><span class="wp-workCard--action visible-if-viewed-by-owner inline-block" style="display: none;"><span class="js-profile-work-strip-edit-button-wrapper profile-work-strip-edit-button-wrapper" data-work-id="113228141"><a class="js-profile-work-strip-edit-button" tabindex="0"><span><i class="fa fa-pencil"></i></span><span>Edit</span></a></span></span><span id="work-strip-rankings-button-container"></span></div><div class="wp-workCard_item wp-workCard--stats"><span><span><span class="js-view-count view-count u-mr2x" data-work-id="113228141"><i class="fa fa-spinner fa-spin"></i></span><script>$(function () { var workId = 113228141; window.Academia.workViewCountsFetcher.queue(workId, function (count) { var description = window.$h.commaizeInt(count) + " " + window.$h.pluralize(count, 'View'); $(".js-view-count[data-work-id=113228141]").text(description); $(".js-view-count[data-work-id=113228141]").attr('title', description).tooltip(); }); });</script></span></span><span><span class="percentile-widget hidden"><span class="u-mr2x work-percentile"></span></span><script>$(function () { var workId = 113228141; window.Academia.workPercentilesFetcher.queue(workId, function (percentileText) { var container = $(".js-work-strip[data-work-id='113228141']"); container.find('.work-percentile').text(percentileText.charAt(0).toUpperCase() + percentileText.slice(1)); container.find('.percentile-widget').show(); container.find('.percentile-widget').removeClass('hidden'); }); });</script></span><span><script>$(function() { new Works.PaperRankView({ workId: 113228141, container: "", }); });</script></span></div><div id="work-strip-premium-row-container"></div></div></div><script> require.config({ waitSeconds: 90 })(["https://a.academia-assets.com/assets/wow_profile-f77ea15d77ce96025a6048a514272ad8becbad23c641fc2b3bd6e24ca6ff1932.js","https://a.academia-assets.com/assets/work_edit-ad038b8c047c1a8d4fa01b402d530ff93c45fee2137a149a4a5398bc8ad67560.js"], function() { // from javascript_helper.rb var dispatcherData = {} if (true){ window.WowProfile.dispatcher = window.WowProfile.dispatcher || _.clone(Backbone.Events); dispatcherData = { dispatcher: window.WowProfile.dispatcher, downloadLinkId: "cd5e529b993ab80e10e5e4f4d0ca22e7" } } $('.js-work-strip[data-work-id=113228141]').each(function() { if (!$(this).data('initialized')) { new WowProfile.WorkStripView({ el: this, workJSON: {"id":113228141,"title":"First description of Yersinia ruckeri serotype O2 in Spain","translated_title":"","metadata":{"abstract":"Yersinia ruckeri was isolated from diseased unvaccinated rainbow trout obtained from a farm in which vaccination against enteric redmouth disease (ERM) has been systematically performed for more than 10 years. 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Serological characterization of the isolate demonstrated that it belongs to the serotype O2b of this bacterial pathogen, which was never before described in Spain.","internal_url":"https://www.academia.edu/113228141/First_description_of_Yersinia_ruckeri_serotype_O2_in_Spain","translated_internal_url":"","created_at":"2024-01-09T08:19:24.581-08:00","preview_url":null,"current_user_can_edit":null,"current_user_is_owner":null,"owner_id":29194678,"coauthors_can_edit":true,"document_type":"paper","co_author_tags":[],"downloadable_attachments":[{"id":110242840,"title":"","file_type":"pdf","scribd_thumbnail_url":"https://attachments.academia-assets.com/110242840/thumbnails/1.jpg","file_name":"23_135.pdf","download_url":"https://www.academia.edu/attachments/110242840/download_file?st=MTczMjQxOTI1Niw4LjIyMi4yMDguMTQ2&","bulk_download_file_name":"First_description_of_Yersinia_ruckeri_se.pdf","bulk_download_url":"https://d1wqtxts1xzle7.cloudfront.net/110242840/23_135-libre.pdf?1704817202=\u0026response-content-disposition=attachment%3B+filename%3DFirst_description_of_Yersinia_ruckeri_se.pdf\u0026Expires=1731455219\u0026Signature=f1XWVo0tJfA1DtNuOp0c2pfK2l8nfeUc8CAPZ-nodgj2BPVpP0kXdCLl~yOkCFulXCUnsbVs5kAKLx6khYy0BtQDFhAkZsiDP85yEfos9KOkPhyG9R4xJMCxpEGAWYVa-NMBiV6PeQa0aMHpPS5sMVus8Bd9CtlSe0-Pf1panxdq4McZzR8m8DejXEqNOzL-l0wFf6VoEjYUxksr~kBcUyHxMyekmQZeSlXJfbnKeyCuHOluD-v3-GmAp5zCSh~RfCZmqf7qmgRo193iXaCW1zdZVV9xKNsqZwRdFvulFWue5ML5u4D04Jj5rLt6jvAEb~fvtbV991HChvz9VUVlng__\u0026Key-Pair-Id=APKAJLOHF5GGSLRBV4ZA"}],"slug":"First_description_of_Yersinia_ruckeri_serotype_O2_in_Spain","translated_slug":"","page_count":4,"language":"en","content_type":"Work","owner":{"id":29194678,"first_name":"Jesus","middle_initials":null,"last_name":"Romalde","page_name":"JesusRomalde","domain_name":"usc-es","created_at":"2015-04-07T10:49:28.579-07:00","display_name":"Jesus Romalde","url":"https://usc-es.academia.edu/JesusRomalde"},"attachments":[{"id":110242840,"title":"","file_type":"pdf","scribd_thumbnail_url":"https://attachments.academia-assets.com/110242840/thumbnails/1.jpg","file_name":"23_135.pdf","download_url":"https://www.academia.edu/attachments/110242840/download_file?st=MTczMjQxOTI1Niw4LjIyMi4yMDguMTQ2&","bulk_download_file_name":"First_description_of_Yersinia_ruckeri_se.pdf","bulk_download_url":"https://d1wqtxts1xzle7.cloudfront.net/110242840/23_135-libre.pdf?1704817202=\u0026response-content-disposition=attachment%3B+filename%3DFirst_description_of_Yersinia_ruckeri_se.pdf\u0026Expires=1731455219\u0026Signature=f1XWVo0tJfA1DtNuOp0c2pfK2l8nfeUc8CAPZ-nodgj2BPVpP0kXdCLl~yOkCFulXCUnsbVs5kAKLx6khYy0BtQDFhAkZsiDP85yEfos9KOkPhyG9R4xJMCxpEGAWYVa-NMBiV6PeQa0aMHpPS5sMVus8Bd9CtlSe0-Pf1panxdq4McZzR8m8DejXEqNOzL-l0wFf6VoEjYUxksr~kBcUyHxMyekmQZeSlXJfbnKeyCuHOluD-v3-GmAp5zCSh~RfCZmqf7qmgRo193iXaCW1zdZVV9xKNsqZwRdFvulFWue5ML5u4D04Jj5rLt6jvAEb~fvtbV991HChvz9VUVlng__\u0026Key-Pair-Id=APKAJLOHF5GGSLRBV4ZA"},{"id":110242839,"title":"","file_type":"pdf","scribd_thumbnail_url":"https://attachments.academia-assets.com/110242839/thumbnails/1.jpg","file_name":"23_135.pdf","download_url":"https://www.academia.edu/attachments/110242839/download_file","bulk_download_file_name":"First_description_of_Yersinia_ruckeri_se.pdf","bulk_download_url":"https://d1wqtxts1xzle7.cloudfront.net/110242839/23_135-libre.pdf?1704817202=\u0026response-content-disposition=attachment%3B+filename%3DFirst_description_of_Yersinia_ruckeri_se.pdf\u0026Expires=1731455219\u0026Signature=fgt9Mir5aWI8UnibGKF4QJIidaiCl6ZJeRLzAw9KvAISEBcczaRph0PAITD7~uQWdm1AkXC~2EIPRwK6~e9sOwDSI8YBW92NkOrNQqNqDajuGn7ZxzbCLUKXDbJYklkYmS~VW7RpeV9Bm~L~H1sEkuocnzQZEbGJcmiHQhz1~nD8l8D-8~7kYy9w0zSs0zL-NchRcQ0ZeTs~Mxye~DKmgDSUrcU0RhxComVoms4iR8HJb-Y2jNFFEybrhEw7MKSXjIEYq9YvNtzNseDJfY~jW7nmg8Prqwe9VkxH0Yc0~CnG3i9Wld8V7eY2gmJvVV7ZWUUPZxFKhRRQrFUODaWDBA__\u0026Key-Pair-Id=APKAJLOHF5GGSLRBV4ZA"}],"research_interests":[{"id":159,"name":"Microbiology","url":"https://www.academia.edu/Documents/in/Microbiology"},{"id":7710,"name":"Biology","url":"https://www.academia.edu/Documents/in/Biology"},{"id":164268,"name":"Pathogen","url":"https://www.academia.edu/Documents/in/Pathogen"},{"id":437726,"name":"Rainbow trout","url":"https://www.academia.edu/Documents/in/Rainbow_trout"},{"id":1690438,"name":"Yersinia ruckeri","url":"https://www.academia.edu/Documents/in/Yersinia_ruckeri"},{"id":2058665,"name":"Serotype","url":"https://www.academia.edu/Documents/in/Serotype"},{"id":3990429,"name":"Yersinia","url":"https://www.academia.edu/Documents/in/Yersinia"},{"id":4076009,"name":"Yersiniosis","url":"https://www.academia.edu/Documents/in/Yersiniosis"}],"urls":[{"id":38388395,"url":"http://eafp.org/download/2003-Volume23/Issue%203/23_135.pdf"}]}, dispatcherData: dispatcherData }); $(this).data('initialized', true); } }); $a.trackClickSource(".js-work-strip-work-link", "profile_work_strip") }); </script> <div class="js-work-strip profile--work_container" data-work-id="113228137"><div class="profile--work_thumbnail hidden-xs"><a class="js-work-strip-work-link" data-click-track="profile-work-strip-thumbnail" href="https://www.academia.edu/113228137/Lactococcus_garvieae_an_emerging_pathogen_for_the_Portuguese_trout_culture"><img alt="Research paper thumbnail of Lactococcus garvieae, an emerging pathogen for the Portuguese trout culture" class="work-thumbnail" src="https://attachments.academia-assets.com/110242885/thumbnails/1.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" href="https://www.academia.edu/113228137/Lactococcus_garvieae_an_emerging_pathogen_for_the_Portuguese_trout_culture">Lactococcus garvieae, an emerging pathogen for the Portuguese trout culture</a></div><div class="wp-workCard_item"><span>Bulletin of The European Association of Fish Pathologists</span><span>, 2004</span></div><div class="wp-workCard_item"><span class="js-work-more-abstract-truncated">We report here the first description in North Portugal of epizootic episodes of lactococcosis cau...</span><a class="js-work-more-abstract" data-broccoli-component="work_strip.more_abstract" data-click-track="profile-work-strip-more-abstract" href="javascript:;"><span> more </span><span><i class="fa fa-caret-down"></i></span></a><span class="js-work-more-abstract-untruncated hidden">We report here the first description in North Portugal of epizootic episodes of lactococcosis causing important mortalities in cultured rainbow trout associated with high water temperatures. The outbreaks that occurred during the warm seasons of 2002 and 2003 affected all size fish, reaching up to 90% mortality in some farms. The taxonomic studies of the isolates obtained indicated that they belonged to Lactococcus garvieae. This identification was confirmed by PCR amplification using specific primers. 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$(this).data('initialized', true); } }); $a.trackClickSource(".js-work-strip-work-link", "profile_work_strip") }); </script> <div class="js-work-strip profile--work_container" data-work-id="113228135"><div class="profile--work_thumbnail hidden-xs"><a class="js-work-strip-work-link" data-click-track="profile-work-strip-thumbnail" href="https://www.academia.edu/113228135/World_Society_for_Virology_first_international_conference_Tackling_global_virus_epidemics"><img alt="Research paper thumbnail of World Society for Virology first international conference: Tackling global virus epidemics" class="work-thumbnail" src="https://a.academia-assets.com/images/blank-paper.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" href="https://www.academia.edu/113228135/World_Society_for_Virology_first_international_conference_Tackling_global_virus_epidemics">World Society for Virology first international conference: Tackling global virus epidemics</a></div><div class="wp-workCard_item"><span>Virology</span><span>, 2021</span></div><div class="wp-workCard_item"><span class="js-work-more-abstract-truncated">This communication summarizes the presentations given at the 1st international conference of the ...</span><a class="js-work-more-abstract" data-broccoli-component="work_strip.more_abstract" data-click-track="profile-work-strip-more-abstract" href="javascript:;"><span> more </span><span><i class="fa fa-caret-down"></i></span></a><span class="js-work-more-abstract-untruncated hidden">This communication summarizes the presentations given at the 1st international conference of the World Society for Virology (WSV) held virtually during 16–18 June 2021, under the theme of tackling global viral epidemics. The purpose of this biennial meeting is to foster international collaborations and address important viral epidemics in different hosts. The first day included two sessions exclusively on SARS-CoV-2 and COVID-19. The other two days included one plenary and three parallel sessions each. Last not least, 16 sessions covered on-demand submitted talks. 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$(this).data('initialized', true); } }); $a.trackClickSource(".js-work-strip-work-link", "profile_work_strip") }); </script> <div class="js-work-strip profile--work_container" data-work-id="113228132"><div class="profile--work_thumbnail hidden-xs"><a class="js-work-strip-work-link" data-click-track="profile-work-strip-thumbnail" href="https://www.academia.edu/113228132/Monitoring_emergence_of_SARS_CoV_2_B_1_1_7_Variant_through_the_Spanish_National_SARS_CoV_2_Wastewater_Surveillance_System_VATar_COVID_19_from_December_2020_to_March_2021"><img alt="Research paper thumbnail of Monitoring emergence of SARS-CoV-2 B.1.1.7 Variant through the Spanish National SARS-CoV-2 Wastewater Surveillance System (VATar COVID-19) from December 2020 to March 2021" class="work-thumbnail" src="https://attachments.academia-assets.com/110242890/thumbnails/1.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" href="https://www.academia.edu/113228132/Monitoring_emergence_of_SARS_CoV_2_B_1_1_7_Variant_through_the_Spanish_National_SARS_CoV_2_Wastewater_Surveillance_System_VATar_COVID_19_from_December_2020_to_March_2021">Monitoring emergence of SARS-CoV-2 B.1.1.7 Variant through the Spanish National SARS-CoV-2 Wastewater Surveillance System (VATar COVID-19) from December 2020 to March 2021</a></div><div class="wp-workCard_item"><span class="js-work-more-abstract-truncated">ABSTRACTBackgroundSince its first identification in the United Kingdom in late 2020, the highly t...</span><a class="js-work-more-abstract" data-broccoli-component="work_strip.more_abstract" data-click-track="profile-work-strip-more-abstract" href="javascript:;"><span> more </span><span><i class="fa fa-caret-down"></i></span></a><span class="js-work-more-abstract-untruncated hidden">ABSTRACTBackgroundSince its first identification in the United Kingdom in late 2020, the highly transmissible B.1.1.7 variant of SARS-CoV-2, become dominant in several European countries raising great concern.AimThe aim of this study was to develop a duplex real-time RT-qPCR assay to detect, discriminate and quantitate SARS-CoV-2 variants containing one of its mutation signatures, the ΔHV69/70 deletion, to trace the community circulation of the B.1.1.7 variant in Spain through the Spanish National SARS-CoV-2 Wastewater Surveillance System (VATar COVID-19).ResultsB.1.1.7 variant was first detected in sewage from the Southern city of Málaga (Andalucía) in week 20_52, and multiple introductions during Christmas holidays were inferred in different parts of the country, earlier than clinical epidemiological reporting by the local authorities. Wastewater-based B.1.1.7 tracking showed a good correlation with clinical data and provided information at the local level. 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$(this).data('initialized', true); } }); $a.trackClickSource(".js-work-strip-work-link", "profile_work_strip") }); </script> <div class="js-work-strip profile--work_container" data-work-id="113228130"><div class="profile--work_thumbnail hidden-xs"><a class="js-work-strip-work-link" data-click-track="profile-work-strip-thumbnail" href="https://www.academia.edu/113228130/Aliarcobacter_vitoriensis_sp_nov_isolated_from_carrot_and_urban_wastewater"><img alt="Research paper thumbnail of Aliarcobacter vitoriensis sp. nov., isolated from carrot and urban wastewater" class="work-thumbnail" src="https://a.academia-assets.com/images/blank-paper.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" href="https://www.academia.edu/113228130/Aliarcobacter_vitoriensis_sp_nov_isolated_from_carrot_and_urban_wastewater">Aliarcobacter vitoriensis sp. nov., isolated from carrot and urban wastewater</a></div><div class="wp-workCard_item"><span>Systematic and Applied Microbiology</span><span>, 2020</span></div><div class="wp-workCard_item"><span class="js-work-more-abstract-truncated">Two isolates, one recovered from a carrot and another one from urban wastewater, were characteriz...</span><a class="js-work-more-abstract" data-broccoli-component="work_strip.more_abstract" data-click-track="profile-work-strip-more-abstract" href="javascript:;"><span> more </span><span><i class="fa fa-caret-down"></i></span></a><span class="js-work-more-abstract-untruncated hidden">Two isolates, one recovered from a carrot and another one from urban wastewater, were characterized using a polyphasic approach. Phylogenetic analysis based on 16S rRNA gene sequences revealed that both isolates clustered together, and were most closely related to Aliarcobacter lanthieri. Multilocus phylogenetic analysis (MLPA) using the concatenated sequences of five housekeeping genes (atpA, gyrA, gyrB, hsp60 and rpoB) suggested that these isolates formed a distinct phylogenetic lineage among the genera derived from the former genus Arcobacter. Whole-genome sequence, in silico DNA-DNA hybridization (isDDH) and the average nucleotide identity (ANI) value between the genome of strain F199T and those of related species confirmed that these isolates represent a novel species. These strains can be differentiated from its phylogenetically closest species A. lanthieri by its inability to growth on 1% glycine and by their enzyme activity of esterase lipase (C8) and acid phosphatase. Our results, by the application of a polyphasic analysis, confirmed that these two isolates represent a novel species of the genus Aliarcobacter, for which the name Aliarcobacter vitoriensis sp. nov. is proposed. 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Our results, by the application of a polyphasic analysis, confirmed that these two isolates represent a novel species of the genus Aliarcobacter, for which the name Aliarcobacter vitoriensis sp. nov. is proposed. The type strain is F199T (=CECT 9230T=LMG 30050T).","publisher":"Elsevier BV","publication_date":{"day":null,"month":null,"year":2020,"errors":{}},"publication_name":"Systematic and Applied Microbiology"},"translated_abstract":"Two isolates, one recovered from a carrot and another one from urban wastewater, were characterized using a polyphasic approach. Phylogenetic analysis based on 16S rRNA gene sequences revealed that both isolates clustered together, and were most closely related to Aliarcobacter lanthieri. Multilocus phylogenetic analysis (MLPA) using the concatenated sequences of five housekeeping genes (atpA, gyrA, gyrB, hsp60 and rpoB) suggested that these isolates formed a distinct phylogenetic lineage among the genera derived from the former genus Arcobacter. Whole-genome sequence, in silico DNA-DNA hybridization (isDDH) and the average nucleotide identity (ANI) value between the genome of strain F199T and those of related species confirmed that these isolates represent a novel species. These strains can be differentiated from its phylogenetically closest species A. lanthieri by its inability to growth on 1% glycine and by their enzyme activity of esterase lipase (C8) and acid phosphatase. Our results, by the application of a polyphasic analysis, confirmed that these two isolates represent a novel species of the genus Aliarcobacter, for which the name Aliarcobacter vitoriensis sp. nov. is proposed. The type strain is F199T (=CECT 9230T=LMG 30050T).","internal_url":"https://www.academia.edu/113228130/Aliarcobacter_vitoriensis_sp_nov_isolated_from_carrot_and_urban_wastewater","translated_internal_url":"","created_at":"2024-01-09T08:19:23.018-08:00","preview_url":null,"current_user_can_edit":null,"current_user_is_owner":null,"owner_id":29194678,"coauthors_can_edit":true,"document_type":"paper","co_author_tags":[],"downloadable_attachments":[],"slug":"Aliarcobacter_vitoriensis_sp_nov_isolated_from_carrot_and_urban_wastewater","translated_slug":"","page_count":null,"language":"en","content_type":"Work","owner":{"id":29194678,"first_name":"Jesus","middle_initials":null,"last_name":"Romalde","page_name":"JesusRomalde","domain_name":"usc-es","created_at":"2015-04-07T10:49:28.579-07:00","display_name":"Jesus Romalde","url":"https://usc-es.academia.edu/JesusRomalde"},"attachments":[],"research_interests":[{"id":155,"name":"Evolutionary Biology","url":"https://www.academia.edu/Documents/in/Evolutionary_Biology"},{"id":159,"name":"Microbiology","url":"https://www.academia.edu/Documents/in/Microbiology"},{"id":4207,"name":"Phylogenetics","url":"https://www.academia.edu/Documents/in/Phylogenetics"},{"id":7710,"name":"Biology","url":"https://www.academia.edu/Documents/in/Biology"},{"id":26327,"name":"Medicine","url":"https://www.academia.edu/Documents/in/Medicine"},{"id":550697,"name":"Phylogenetic Tree","url":"https://www.academia.edu/Documents/in/Phylogenetic_Tree"}],"urls":[{"id":38388385,"url":"https://api.elsevier.com/content/article/PII:S0723202020300424?httpAccept=text/xml"}]}, dispatcherData: dispatcherData }); $(this).data('initialized', true); } }); $a.trackClickSource(".js-work-strip-work-link", "profile_work_strip") }); </script> <div class="js-work-strip profile--work_container" data-work-id="113228129"><div class="profile--work_thumbnail hidden-xs"><a class="js-work-strip-work-link" data-click-track="profile-work-strip-thumbnail" href="https://www.academia.edu/113228129/Phenotypic_antigenic_and_molecular_characterization_of_Pasteurella_piscicida_strains_isolated_from_fish"><img alt="Research paper thumbnail of Phenotypic, antigenic, and molecular characterization of Pasteurella piscicida strains isolated from fish" class="work-thumbnail" src="https://attachments.academia-assets.com/110242896/thumbnails/1.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" href="https://www.academia.edu/113228129/Phenotypic_antigenic_and_molecular_characterization_of_Pasteurella_piscicida_strains_isolated_from_fish">Phenotypic, antigenic, and molecular characterization of Pasteurella piscicida strains isolated from fish</a></div><div class="wp-workCard_item"><span>Applied and Environmental Microbiology</span><span>, 1992</span></div><div class="wp-workCard_item"><span class="js-work-more-abstract-truncated">We compared Pasteurella piscicida strains isolated from different fish species in several Europea...</span><a class="js-work-more-abstract" data-broccoli-component="work_strip.more_abstract" data-click-track="profile-work-strip-more-abstract" href="javascript:;"><span> more </span><span><i class="fa fa-caret-down"></i></span></a><span class="js-work-more-abstract-untruncated hidden">We compared Pasteurella piscicida strains isolated from different fish species in several European countries with strains isolated in Japan and the United States. The taxonomic analysis revealed that, regardless of the geographic origin and source of isolation, all the strains exhibited the same biochemical and physiological characteristics. Serological assays with different rabbit antisera demonstrated a high level of antigenic similarity among strains, with cross-agglutination titers of 20,480 to 40,960. This serological homogeneity was supported by the lipopolysaccharide (LPS) and membrane protein profiles. All the P. piscicida strains had the same electrophoretic LPS pattern, showing O side chains with a ladder-like structure, and shared at least four major outer membrane proteins, of 20, 30, 42, and 53 kDa. Western blot (immunoblot) analysis with LPS and protein indicated that all the P. piscicida strains are immunologically related. In addition, the chromosomal DNA fingerprint...</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><a id="a1d8a4dbaaff7b5234d3a1ebd7a28a56" class="wp-workCard--action" rel="nofollow" data-click-track="profile-work-strip-download" data-download="{"attachment_id":110242896,"asset_id":113228129,"asset_type":"Work","button_location":"profile"}" href="https://www.academia.edu/attachments/110242896/download_file?st=MTczMjQxOTI1Niw4LjIyMi4yMDguMTQ2&s=profile"><span><i class="fa fa-arrow-down"></i></span><span>Download</span></a><span class="wp-workCard--action visible-if-viewed-by-owner inline-block" style="display: none;"><span class="js-profile-work-strip-edit-button-wrapper profile-work-strip-edit-button-wrapper" data-work-id="113228129"><a class="js-profile-work-strip-edit-button" tabindex="0"><span><i class="fa fa-pencil"></i></span><span>Edit</span></a></span></span><span id="work-strip-rankings-button-container"></span></div><div class="wp-workCard_item wp-workCard--stats"><span><span><span class="js-view-count view-count u-mr2x" data-work-id="113228129"><i class="fa fa-spinner fa-spin"></i></span><script>$(function () { var workId = 113228129; window.Academia.workViewCountsFetcher.queue(workId, function (count) { var description = window.$h.commaizeInt(count) + " " + window.$h.pluralize(count, 'View'); $(".js-view-count[data-work-id=113228129]").text(description); $(".js-view-count[data-work-id=113228129]").attr('title', description).tooltip(); }); });</script></span></span><span><span class="percentile-widget hidden"><span class="u-mr2x work-percentile"></span></span><script>$(function () { var workId = 113228129; window.Academia.workPercentilesFetcher.queue(workId, function (percentileText) { var container = $(".js-work-strip[data-work-id='113228129']"); container.find('.work-percentile').text(percentileText.charAt(0).toUpperCase() + percentileText.slice(1)); container.find('.percentile-widget').show(); container.find('.percentile-widget').removeClass('hidden'); }); });</script></span><span><script>$(function() { new Works.PaperRankView({ workId: 113228129, container: "", }); });</script></span></div><div id="work-strip-premium-row-container"></div></div></div><script> require.config({ waitSeconds: 90 })(["https://a.academia-assets.com/assets/wow_profile-f77ea15d77ce96025a6048a514272ad8becbad23c641fc2b3bd6e24ca6ff1932.js","https://a.academia-assets.com/assets/work_edit-ad038b8c047c1a8d4fa01b402d530ff93c45fee2137a149a4a5398bc8ad67560.js"], function() { // from javascript_helper.rb var dispatcherData = {} if (true){ window.WowProfile.dispatcher = window.WowProfile.dispatcher || _.clone(Backbone.Events); dispatcherData = { dispatcher: window.WowProfile.dispatcher, downloadLinkId: "a1d8a4dbaaff7b5234d3a1ebd7a28a56" } } $('.js-work-strip[data-work-id=113228129]').each(function() { if (!$(this).data('initialized')) { new WowProfile.WorkStripView({ el: this, workJSON: {"id":113228129,"title":"Phenotypic, antigenic, and molecular characterization of Pasteurella piscicida strains isolated from fish","translated_title":"","metadata":{"abstract":"We compared Pasteurella piscicida strains isolated from different fish species in several European countries with strains isolated in Japan and the United States. The taxonomic analysis revealed that, regardless of the geographic origin and source of isolation, all the strains exhibited the same biochemical and physiological characteristics. Serological assays with different rabbit antisera demonstrated a high level of antigenic similarity among strains, with cross-agglutination titers of 20,480 to 40,960. This serological homogeneity was supported by the lipopolysaccharide (LPS) and membrane protein profiles. All the P. piscicida strains had the same electrophoretic LPS pattern, showing O side chains with a ladder-like structure, and shared at least four major outer membrane proteins, of 20, 30, 42, and 53 kDa. Western blot (immunoblot) analysis with LPS and protein indicated that all the P. piscicida strains are immunologically related. In addition, the chromosomal DNA fingerprint...","publisher":"American Society for Microbiology","publication_date":{"day":null,"month":null,"year":1992,"errors":{}},"publication_name":"Applied and Environmental Microbiology"},"translated_abstract":"We compared Pasteurella piscicida strains isolated from different fish species in several European countries with strains isolated in Japan and the United States. The taxonomic analysis revealed that, regardless of the geographic origin and source of isolation, all the strains exhibited the same biochemical and physiological characteristics. Serological assays with different rabbit antisera demonstrated a high level of antigenic similarity among strains, with cross-agglutination titers of 20,480 to 40,960. This serological homogeneity was supported by the lipopolysaccharide (LPS) and membrane protein profiles. All the P. piscicida strains had the same electrophoretic LPS pattern, showing O side chains with a ladder-like structure, and shared at least four major outer membrane proteins, of 20, 30, 42, and 53 kDa. Western blot (immunoblot) analysis with LPS and protein indicated that all the P. piscicida strains are immunologically related. In addition, the chromosomal DNA fingerprint...","internal_url":"https://www.academia.edu/113228129/Phenotypic_antigenic_and_molecular_characterization_of_Pasteurella_piscicida_strains_isolated_from_fish","translated_internal_url":"","created_at":"2024-01-09T08:19:22.808-08:00","preview_url":null,"current_user_can_edit":null,"current_user_is_owner":null,"owner_id":29194678,"coauthors_can_edit":true,"document_type":"paper","co_author_tags":[],"downloadable_attachments":[{"id":110242896,"title":"","file_type":"pdf","scribd_thumbnail_url":"https://attachments.academia-assets.com/110242896/thumbnails/1.jpg","file_name":"3316.full.pdf","download_url":"https://www.academia.edu/attachments/110242896/download_file?st=MTczMjQxOTI1Niw4LjIyMi4yMDguMTQ2&","bulk_download_file_name":"Phenotypic_antigenic_and_molecular_chara.pdf","bulk_download_url":"https://d1wqtxts1xzle7.cloudfront.net/110242896/3316.full-libre.pdf?1704818780=\u0026response-content-disposition=attachment%3B+filename%3DPhenotypic_antigenic_and_molecular_chara.pdf\u0026Expires=1731455219\u0026Signature=M46NoPbQd0~hdqgL7W9gkaoqiV6T9t~CBIfbUd8iLkpY2lMXmoVBq23xSZYUBLxvNFEJ4QeSKKiIqhI68FYpnZb3JI0kMAA0l0p37PLbCcwKTGQXU0cWQdaImlKQulij7miA1mLqyi61MmY1jiqvb2h85-XZXc8IJEVWwmxsgq-zu6WkJPdRFYkxt5wkpb93sk4D6NZouIvIBNVY-uRNNAolvexZMdqqkhyHxgG~VXUAx4VYW5hgphU-9ioH1jdAd5nT7~9kfGacIVU3NGHHkMWM2jMooT2WDZjGoVHXuVmlrg~KxKgKbZGODHIRjbUsqpwB8xWlaK~8E-1oN9clpQ__\u0026Key-Pair-Id=APKAJLOHF5GGSLRBV4ZA"}],"slug":"Phenotypic_antigenic_and_molecular_characterization_of_Pasteurella_piscicida_strains_isolated_from_fish","translated_slug":"","page_count":7,"language":"en","content_type":"Work","owner":{"id":29194678,"first_name":"Jesus","middle_initials":null,"last_name":"Romalde","page_name":"JesusRomalde","domain_name":"usc-es","created_at":"2015-04-07T10:49:28.579-07:00","display_name":"Jesus Romalde","url":"https://usc-es.academia.edu/JesusRomalde"},"attachments":[{"id":110242896,"title":"","file_type":"pdf","scribd_thumbnail_url":"https://attachments.academia-assets.com/110242896/thumbnails/1.jpg","file_name":"3316.full.pdf","download_url":"https://www.academia.edu/attachments/110242896/download_file?st=MTczMjQxOTI1Niw4LjIyMi4yMDguMTQ2&","bulk_download_file_name":"Phenotypic_antigenic_and_molecular_chara.pdf","bulk_download_url":"https://d1wqtxts1xzle7.cloudfront.net/110242896/3316.full-libre.pdf?1704818780=\u0026response-content-disposition=attachment%3B+filename%3DPhenotypic_antigenic_and_molecular_chara.pdf\u0026Expires=1731455219\u0026Signature=M46NoPbQd0~hdqgL7W9gkaoqiV6T9t~CBIfbUd8iLkpY2lMXmoVBq23xSZYUBLxvNFEJ4QeSKKiIqhI68FYpnZb3JI0kMAA0l0p37PLbCcwKTGQXU0cWQdaImlKQulij7miA1mLqyi61MmY1jiqvb2h85-XZXc8IJEVWwmxsgq-zu6WkJPdRFYkxt5wkpb93sk4D6NZouIvIBNVY-uRNNAolvexZMdqqkhyHxgG~VXUAx4VYW5hgphU-9ioH1jdAd5nT7~9kfGacIVU3NGHHkMWM2jMooT2WDZjGoVHXuVmlrg~KxKgKbZGODHIRjbUsqpwB8xWlaK~8E-1oN9clpQ__\u0026Key-Pair-Id=APKAJLOHF5GGSLRBV4ZA"}],"research_interests":[{"id":159,"name":"Microbiology","url":"https://www.academia.edu/Documents/in/Microbiology"},{"id":7710,"name":"Biology","url":"https://www.academia.edu/Documents/in/Biology"},{"id":17158,"name":"Japan","url":"https://www.academia.edu/Documents/in/Japan"},{"id":26327,"name":"Medicine","url":"https://www.academia.edu/Documents/in/Medicine"},{"id":28235,"name":"Multidisciplinary","url":"https://www.academia.edu/Documents/in/Multidisciplinary"},{"id":75826,"name":"Europe","url":"https://www.academia.edu/Documents/in/Europe"},{"id":96502,"name":"Applied","url":"https://www.academia.edu/Documents/in/Applied"},{"id":98134,"name":"United States","url":"https://www.academia.edu/Documents/in/United_States"},{"id":99234,"name":"Animals","url":"https://www.academia.edu/Documents/in/Animals"},{"id":107664,"name":"Applied Environmental Microbiology","url":"https://www.academia.edu/Documents/in/Applied_Environmental_Microbiology"},{"id":115151,"name":"Microbial genetic and drug resistance","url":"https://www.academia.edu/Documents/in/Microbial_genetic_and_drug_resistance"},{"id":117270,"name":"Fishes","url":"https://www.academia.edu/Documents/in/Fishes"},{"id":134041,"name":"DNA fingerprinting","url":"https://www.academia.edu/Documents/in/DNA_fingerprinting"},{"id":190363,"name":"Plasmids","url":"https://www.academia.edu/Documents/in/Plasmids"},{"id":213897,"name":"Phenotype","url":"https://www.academia.edu/Documents/in/Phenotype"},{"id":1114508,"name":"Plasmid","url":"https://www.academia.edu/Documents/in/Plasmid"},{"id":1426713,"name":"Antigen","url":"https://www.academia.edu/Documents/in/Antigen"},{"id":3052694,"name":"Pasteurella","url":"https://www.academia.edu/Documents/in/Pasteurella"}],"urls":[{"id":38388384,"url":"https://journals.asm.org/doi/pdf/10.1128/aem.58.10.3316-3322.1992"}]}, dispatcherData: dispatcherData }); $(this).data('initialized', true); } }); $a.trackClickSource(".js-work-strip-work-link", "profile_work_strip") }); </script> <div class="js-work-strip profile--work_container" data-work-id="113228128"><div class="profile--work_thumbnail hidden-xs"><a class="js-work-strip-work-link" data-click-track="profile-work-strip-thumbnail" href="https://www.academia.edu/113228128/_EUROmicroMOOC_using_Twitter_to_share_trends_in_Microbiology_worldwide"><img alt="Research paper thumbnail of #EUROmicroMOOC: using Twitter to share trends in Microbiology worldwide" class="work-thumbnail" src="https://attachments.academia-assets.com/110242838/thumbnails/1.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" href="https://www.academia.edu/113228128/_EUROmicroMOOC_using_Twitter_to_share_trends_in_Microbiology_worldwide">#EUROmicroMOOC: using Twitter to share trends in Microbiology worldwide</a></div><div class="wp-workCard_item"><span>FEMS Microbiology Letters</span><span>, 2019</span></div><div class="wp-workCard_item"><span class="js-work-more-abstract-truncated">Twitter is one of the most popular social media networks that, in recent years, has been increasi...</span><a class="js-work-more-abstract" data-broccoli-component="work_strip.more_abstract" data-click-track="profile-work-strip-more-abstract" href="javascript:;"><span> more </span><span><i class="fa fa-caret-down"></i></span></a><span class="js-work-more-abstract-untruncated hidden">Twitter is one of the most popular social media networks that, in recent years, has been increasingly used by researchers as a platform to share science and discuss ongoing work. Despite its popularity, Twitter is not commonly used as a medium to teach science. Here, we summarize the results of #EUROmicroMOOC: the first worldwide Microbiology Massive Open Online Course taught in English using Twitter. Content analytics indicated that more than 3 million users saw posts with the hashtag #EUROmicroMOOC, which resulted in over 42 million Twitter impressions worldwide. These analyses demonstrate that free Microbiology MOOCs shared on Twitter are valuable educational tools that reach broad audiences throughout the world. We also describe our experience teaching an entire Microbiology course using Twitter and provide recommendations when using social media to communicate science to a broad audience.</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><a id="01ee217c1df5038075bafbe2296ab183" class="wp-workCard--action" rel="nofollow" data-click-track="profile-work-strip-download" data-download="{"attachment_id":110242838,"asset_id":113228128,"asset_type":"Work","button_location":"profile"}" href="https://www.academia.edu/attachments/110242838/download_file?st=MTczMjQxOTI1Niw4LjIyMi4yMDguMTQ2&s=profile"><span><i class="fa fa-arrow-down"></i></span><span>Download</span></a><span class="wp-workCard--action visible-if-viewed-by-owner inline-block" style="display: none;"><span class="js-profile-work-strip-edit-button-wrapper profile-work-strip-edit-button-wrapper" data-work-id="113228128"><a class="js-profile-work-strip-edit-button" tabindex="0"><span><i class="fa fa-pencil"></i></span><span>Edit</span></a></span></span><span id="work-strip-rankings-button-container"></span></div><div class="wp-workCard_item wp-workCard--stats"><span><span><span class="js-view-count view-count u-mr2x" data-work-id="113228128"><i class="fa fa-spinner fa-spin"></i></span><script>$(function () { var workId = 113228128; window.Academia.workViewCountsFetcher.queue(workId, function (count) { var description = window.$h.commaizeInt(count) + " " + window.$h.pluralize(count, 'View'); $(".js-view-count[data-work-id=113228128]").text(description); $(".js-view-count[data-work-id=113228128]").attr('title', description).tooltip(); }); });</script></span></span><span><span class="percentile-widget hidden"><span class="u-mr2x work-percentile"></span></span><script>$(function () { var workId = 113228128; window.Academia.workPercentilesFetcher.queue(workId, function (percentileText) { var container = $(".js-work-strip[data-work-id='113228128']"); container.find('.work-percentile').text(percentileText.charAt(0).toUpperCase() + percentileText.slice(1)); container.find('.percentile-widget').show(); container.find('.percentile-widget').removeClass('hidden'); }); });</script></span><span><script>$(function() { new Works.PaperRankView({ workId: 113228128, container: "", }); });</script></span></div><div id="work-strip-premium-row-container"></div></div></div><script> require.config({ waitSeconds: 90 })(["https://a.academia-assets.com/assets/wow_profile-f77ea15d77ce96025a6048a514272ad8becbad23c641fc2b3bd6e24ca6ff1932.js","https://a.academia-assets.com/assets/work_edit-ad038b8c047c1a8d4fa01b402d530ff93c45fee2137a149a4a5398bc8ad67560.js"], function() { // from javascript_helper.rb var dispatcherData = {} if (true){ window.WowProfile.dispatcher = window.WowProfile.dispatcher || _.clone(Backbone.Events); dispatcherData = { dispatcher: window.WowProfile.dispatcher, downloadLinkId: "01ee217c1df5038075bafbe2296ab183" } } $('.js-work-strip[data-work-id=113228128]').each(function() { if (!$(this).data('initialized')) { new WowProfile.WorkStripView({ el: this, workJSON: {"id":113228128,"title":"#EUROmicroMOOC: using Twitter to share trends in Microbiology worldwide","translated_title":"","metadata":{"abstract":"Twitter is one of the most popular social media networks that, in recent years, has been increasingly used by researchers as a platform to share science and discuss ongoing work. Despite its popularity, Twitter is not commonly used as a medium to teach science. Here, we summarize the results of #EUROmicroMOOC: the first worldwide Microbiology Massive Open Online Course taught in English using Twitter. Content analytics indicated that more than 3 million users saw posts with the hashtag #EUROmicroMOOC, which resulted in over 42 million Twitter impressions worldwide. These analyses demonstrate that free Microbiology MOOCs shared on Twitter are valuable educational tools that reach broad audiences throughout the world. We also describe our experience teaching an entire Microbiology course using Twitter and provide recommendations when using social media to communicate science to a broad audience.","publisher":"Oxford University Press (OUP)","publication_date":{"day":null,"month":null,"year":2019,"errors":{}},"publication_name":"FEMS Microbiology Letters"},"translated_abstract":"Twitter is one of the most popular social media networks that, in recent years, has been increasingly used by researchers as a platform to share science and discuss ongoing work. Despite its popularity, Twitter is not commonly used as a medium to teach science. Here, we summarize the results of #EUROmicroMOOC: the first worldwide Microbiology Massive Open Online Course taught in English using Twitter. Content analytics indicated that more than 3 million users saw posts with the hashtag #EUROmicroMOOC, which resulted in over 42 million Twitter impressions worldwide. These analyses demonstrate that free Microbiology MOOCs shared on Twitter are valuable educational tools that reach broad audiences throughout the world. We also describe our experience teaching an entire Microbiology course using Twitter and provide recommendations when using social media to communicate science to a broad 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wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" href="https://www.academia.edu/113228127/Sapovirus_in_Wastewater_Treatment_Plants_in_Tunisia_Prevalence_Removal_and_Genetic_Characterization">Sapovirus in Wastewater Treatment Plants in Tunisia: Prevalence, Removal, and Genetic Characterization</a></div><div class="wp-workCard_item"><span>Applied and environmental microbiology</span><span>, Jan 15, 2018</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><a id="8244f2182875b3634860d452598a0bc7" class="wp-workCard--action" rel="nofollow" data-click-track="profile-work-strip-download" data-download="{"attachment_id":110242888,"asset_id":113228127,"asset_type":"Work","button_location":"profile"}" 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SaV is shed at high concentrations with feces into wastewater, which is usually discharged into aquatic environments or reused for irrigation without efficient treatments. This study analyzed the incidence of human SaV in four wastewater treatment plants from Tunisia during a period of 13 months (December 2009 to December 2010). Detection and quantification were carried out using reverse transcription-quantitative PCR (RT-qPCR) methods, obtaining a prevalence of 39.9% (87/ 218). Sixty-one positive samples were detected in untreated water and 26 positive samples in processed water. The Dekhila plant presented the highest contamination levels, with a 63.0% prevalence. A dominance of genotype I.2 was observed on 15 of the 24 positive samples that were genetically characterized. By a Bayesian estimation algorithm, the SaV density in wastewater was estimated using left-censored data sets. The mean value of log SaV concentration in untreated wastewater ranged between 2.7 and 4.5 logs. A virus removal efficiency of 0.2 log was calculated for the Dekhila plant as the log ratio posterior distributions between untreated and treated wastewater. Multiple quantitative values obtained in this study must be available in quantitative microbial risk assessment in Tunisia as parameter values reflecting local conditions.","publication_date":{"day":15,"month":1,"year":2018,"errors":{}},"publication_name":"Applied and environmental microbiology","grobid_abstract_attachment_id":110242888},"translated_abstract":null,"internal_url":"https://www.academia.edu/113228127/Sapovirus_in_Wastewater_Treatment_Plants_in_Tunisia_Prevalence_Removal_and_Genetic_Characterization","translated_internal_url":"","created_at":"2024-01-09T08:19:22.459-08:00","preview_url":null,"current_user_can_edit":null,"current_user_is_owner":null,"owner_id":29194678,"coauthors_can_edit":true,"document_type":"paper","co_author_tags":[],"downloadable_attachments":[{"id":110242888,"title":"","file_type":"pdf","scribd_thumbnail_url":"https://attachments.academia-assets.com/110242888/thumbnails/1.jpg","file_name":"e02093-17.full.pdf","download_url":"https://www.academia.edu/attachments/110242888/download_file?st=MTczMjQxOTI1Niw4LjIyMi4yMDguMTQ2&","bulk_download_file_name":"Sapovirus_in_Wastewater_Treatment_Plants.pdf","bulk_download_url":"https://d1wqtxts1xzle7.cloudfront.net/110242888/e02093-17.full-libre.pdf?1704818772=\u0026response-content-disposition=attachment%3B+filename%3DSapovirus_in_Wastewater_Treatment_Plants.pdf\u0026Expires=1732351226\u0026Signature=gcnO0I0hHVKhqW-cvlznjliv2DuS~TNDJ3rw5htGgUORtI6CGK9R13aNd86VnAoi9nUKfAIncCs1r90H71j1FQsk8W3iZ5~HX-68XCw8Eg68QKF6PDSrgacitomJ83LqrcBmafYYwCCaVUzhXGAZbj3XwuzmYGbU1RmI1yVDuvPAljW-fLyhOgsNi9jNHW9oNsK1FntrFm1oou1Uxt7J~juXzRqRfpBxnQpXt~JMNs6-hqxTAWBtbI8vmtfHzbphZpAngajrErWXuNR7qQAgY1VkA7ttoizLQSIslJEm08eUfTAAf0C3itSDca9KJdH6Whv5f3PQl1PWHOlkLP1KCA__\u0026Key-Pair-Id=APKAJLOHF5GGSLRBV4ZA"}],"slug":"Sapovirus_in_Wastewater_Treatment_Plants_in_Tunisia_Prevalence_Removal_and_Genetic_Characterization","translated_slug":"","page_count":11,"language":"en","content_type":"Work","owner":{"id":29194678,"first_name":"Jesus","middle_initials":null,"last_name":"Romalde","page_name":"JesusRomalde","domain_name":"usc-es","created_at":"2015-04-07T10:49:28.579-07:00","display_name":"Jesus Romalde","url":"https://usc-es.academia.edu/JesusRomalde"},"attachments":[{"id":110242888,"title":"","file_type":"pdf","scribd_thumbnail_url":"https://attachments.academia-assets.com/110242888/thumbnails/1.jpg","file_name":"e02093-17.full.pdf","download_url":"https://www.academia.edu/attachments/110242888/download_file?st=MTczMjQxOTI1Niw4LjIyMi4yMDguMTQ2&","bulk_download_file_name":"Sapovirus_in_Wastewater_Treatment_Plants.pdf","bulk_download_url":"https://d1wqtxts1xzle7.cloudfront.net/110242888/e02093-17.full-libre.pdf?1704818772=\u0026response-content-disposition=attachment%3B+filename%3DSapovirus_in_Wastewater_Treatment_Plants.pdf\u0026Expires=1732351226\u0026Signature=gcnO0I0hHVKhqW-cvlznjliv2DuS~TNDJ3rw5htGgUORtI6CGK9R13aNd86VnAoi9nUKfAIncCs1r90H71j1FQsk8W3iZ5~HX-68XCw8Eg68QKF6PDSrgacitomJ83LqrcBmafYYwCCaVUzhXGAZbj3XwuzmYGbU1RmI1yVDuvPAljW-fLyhOgsNi9jNHW9oNsK1FntrFm1oou1Uxt7J~juXzRqRfpBxnQpXt~JMNs6-hqxTAWBtbI8vmtfHzbphZpAngajrErWXuNR7qQAgY1VkA7ttoizLQSIslJEm08eUfTAAf0C3itSDca9KJdH6Whv5f3PQl1PWHOlkLP1KCA__\u0026Key-Pair-Id=APKAJLOHF5GGSLRBV4ZA"}],"research_interests":[{"id":657,"name":"Veterinary Medicine","url":"https://www.academia.edu/Documents/in/Veterinary_Medicine"},{"id":7710,"name":"Biology","url":"https://www.academia.edu/Documents/in/Biology"},{"id":26327,"name":"Medicine","url":"https://www.academia.edu/Documents/in/Medicine"},{"id":28235,"name":"Multidisciplinary","url":"https://www.academia.edu/Documents/in/Multidisciplinary"},{"id":65757,"name":"Wastewater","url":"https://www.academia.edu/Documents/in/Wastewater"},{"id":107664,"name":"Applied Environmental Microbiology","url":"https://www.academia.edu/Documents/in/Applied_Environmental_Microbiology"},{"id":372410,"name":"Genotype","url":"https://www.academia.edu/Documents/in/Genotype"},{"id":469102,"name":"Feces","url":"https://www.academia.edu/Documents/in/Feces"},{"id":551896,"name":"Sewage Treatment","url":"https://www.academia.edu/Documents/in/Sewage_Treatment"}],"urls":[]}, dispatcherData: dispatcherData }); $(this).data('initialized', true); } }); $a.trackClickSource(".js-work-strip-work-link", "profile_work_strip") }); </script> <div class="js-work-strip profile--work_container" data-work-id="113228126"><div class="profile--work_thumbnail hidden-xs"><a class="js-work-strip-work-link" data-click-track="profile-work-strip-thumbnail" href="https://www.academia.edu/113228126/Complete_Genome_Sequence_of_Arcobacter_sp_Strain_LFT_1_7_Isolated_from_Great_Scallop_Pecten_maximus_Larvae"><img alt="Research paper thumbnail of Complete Genome Sequence of Arcobacter sp. Strain LFT 1.7 Isolated from Great Scallop ( Pecten maximus ) Larvae" class="work-thumbnail" src="https://attachments.academia-assets.com/110242884/thumbnails/1.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" href="https://www.academia.edu/113228126/Complete_Genome_Sequence_of_Arcobacter_sp_Strain_LFT_1_7_Isolated_from_Great_Scallop_Pecten_maximus_Larvae">Complete Genome Sequence of Arcobacter sp. Strain LFT 1.7 Isolated from Great Scallop ( Pecten maximus ) Larvae</a></div><div class="wp-workCard_item"><span>Genome Announcements</span><span>, 2017</span></div><div class="wp-workCard_item"><span class="js-work-more-abstract-truncated">Arcobacter sp. strain LFT 1.7 was isolated from great scallop ( Pecten maximus ) larvae. Analysis...</span><a class="js-work-more-abstract" data-broccoli-component="work_strip.more_abstract" data-click-track="profile-work-strip-more-abstract" href="javascript:;"><span> more </span><span><i class="fa fa-caret-down"></i></span></a><span class="js-work-more-abstract-untruncated hidden">Arcobacter sp. strain LFT 1.7 was isolated from great scallop ( Pecten maximus ) larvae. Analysis of the 16S rRNA gene sequence showed that strain LFT 1.7 formed an independent lineage in the genus Arcobacter . The draft genome of LFT 1.7 was sequenced to determine the taxonomic position and ecological function of this strain.</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><a id="67faafa5dfdfd60acdedfbf96e035186" class="wp-workCard--action" rel="nofollow" data-click-track="profile-work-strip-download" data-download="{"attachment_id":110242884,"asset_id":113228126,"asset_type":"Work","button_location":"profile"}" href="https://www.academia.edu/attachments/110242884/download_file?st=MTczMjQxOTI1Niw4LjIyMi4yMDguMTQ2&s=profile"><span><i class="fa fa-arrow-down"></i></span><span>Download</span></a><span class="wp-workCard--action visible-if-viewed-by-owner inline-block" style="display: none;"><span class="js-profile-work-strip-edit-button-wrapper profile-work-strip-edit-button-wrapper" data-work-id="113228126"><a class="js-profile-work-strip-edit-button" tabindex="0"><span><i class="fa fa-pencil"></i></span><span>Edit</span></a></span></span><span id="work-strip-rankings-button-container"></span></div><div class="wp-workCard_item wp-workCard--stats"><span><span><span class="js-view-count view-count u-mr2x" data-work-id="113228126"><i class="fa fa-spinner fa-spin"></i></span><script>$(function () { var workId = 113228126; window.Academia.workViewCountsFetcher.queue(workId, function (count) { var description = window.$h.commaizeInt(count) + " " + window.$h.pluralize(count, 'View'); $(".js-view-count[data-work-id=113228126]").text(description); $(".js-view-count[data-work-id=113228126]").attr('title', description).tooltip(); }); });</script></span></span><span><span class="percentile-widget hidden"><span class="u-mr2x work-percentile"></span></span><script>$(function () { var workId = 113228126; window.Academia.workPercentilesFetcher.queue(workId, function (percentileText) { var container = $(".js-work-strip[data-work-id='113228126']"); container.find('.work-percentile').text(percentileText.charAt(0).toUpperCase() + percentileText.slice(1)); container.find('.percentile-widget').show(); container.find('.percentile-widget').removeClass('hidden'); }); });</script></span><span><script>$(function() { new Works.PaperRankView({ workId: 113228126, container: "", }); });</script></span></div><div id="work-strip-premium-row-container"></div></div></div><script> require.config({ waitSeconds: 90 })(["https://a.academia-assets.com/assets/wow_profile-f77ea15d77ce96025a6048a514272ad8becbad23c641fc2b3bd6e24ca6ff1932.js","https://a.academia-assets.com/assets/work_edit-ad038b8c047c1a8d4fa01b402d530ff93c45fee2137a149a4a5398bc8ad67560.js"], function() { // from javascript_helper.rb var dispatcherData = {} if (true){ window.WowProfile.dispatcher = window.WowProfile.dispatcher || _.clone(Backbone.Events); dispatcherData = { dispatcher: window.WowProfile.dispatcher, downloadLinkId: "67faafa5dfdfd60acdedfbf96e035186" } } $('.js-work-strip[data-work-id=113228126]').each(function() { if (!$(this).data('initialized')) { new WowProfile.WorkStripView({ el: this, workJSON: {"id":113228126,"title":"Complete Genome Sequence of Arcobacter sp. Strain LFT 1.7 Isolated from Great Scallop ( Pecten maximus ) Larvae","translated_title":"","metadata":{"abstract":"Arcobacter sp. strain LFT 1.7 was isolated from great scallop ( Pecten maximus ) larvae. Analysis of the 16S rRNA gene sequence showed that strain LFT 1.7 formed an independent lineage in the genus Arcobacter . The draft genome of LFT 1.7 was sequenced to determine the taxonomic position and ecological function of this strain.","publisher":"American Society for Microbiology","publication_date":{"day":null,"month":null,"year":2017,"errors":{}},"publication_name":"Genome Announcements"},"translated_abstract":"Arcobacter sp. strain LFT 1.7 was isolated from great scallop ( Pecten maximus ) larvae. Analysis of the 16S rRNA gene sequence showed that strain LFT 1.7 formed an independent lineage in the genus Arcobacter . 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$(this).data('initialized', true); } }); $a.trackClickSource(".js-work-strip-work-link", "profile_work_strip") }); </script> </div><div class="profile--tab_content_container js-tab-pane tab-pane" data-section-id="2824508" id="papers"><div class="js-work-strip profile--work_container" data-work-id="124133044"><div class="profile--work_thumbnail hidden-xs"><a class="js-work-strip-work-link" data-click-track="profile-work-strip-thumbnail" href="https://www.academia.edu/124133044/Co_existence_of_two_Yersinia_ruckeri_biotypes_and_serotype_O1a_retrieved_from_rainbow_trout_Oncorhynchus_mykiss_farmed_in_Puno_Peru"><img alt="Research paper thumbnail of Co‐existence of two Yersinia ruckeri biotypes and serotype O1a retrieved from rainbow trout (Oncorhynchus mykiss) farmed in Puno, Peru" class="work-thumbnail" src="https://a.academia-assets.com/images/blank-paper.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" href="https://www.academia.edu/124133044/Co_existence_of_two_Yersinia_ruckeri_biotypes_and_serotype_O1a_retrieved_from_rainbow_trout_Oncorhynchus_mykiss_farmed_in_Puno_Peru">Co‐existence of two Yersinia ruckeri biotypes and serotype O1a retrieved from rainbow trout (Oncorhynchus mykiss) farmed in Puno, Peru</a></div><div class="wp-workCard_item"><span>Journal of Fish Diseases</span></div><div class="wp-workCard_item"><span class="js-work-more-abstract-truncated">Yersinia ruckeri causes important economic losses for rainbow trout (Oncorhynchus mykiss) farms w...</span><a class="js-work-more-abstract" data-broccoli-component="work_strip.more_abstract" data-click-track="profile-work-strip-more-abstract" href="javascript:;"><span> more </span><span><i class="fa fa-caret-down"></i></span></a><span class="js-work-more-abstract-untruncated hidden">Yersinia ruckeri causes important economic losses for rainbow trout (Oncorhynchus mykiss) farms worldwide. This bacterial disease is likely the most common among trout in Peru; however, no commercial vaccine is available nationally, which is, in part, due to a lack of information on the bacterium. The aim of the current study was to characterize 29 Y. ruckeri isolates sampled from seven cage‐reared farms in the Puno Region, the focal point for aquaculture activities in Peru. For this, samples were taken from fish with clinical signs (i.e. haemorrhages, uni‐ or bilateral exophthalmia, hyphaemia and/or melanosis). Notable among our findings was the existence of both Y. ruckeri biotype 1 (9 isolates) and biotype 2 (20 isolates; negative for sorbitol and Tween 80). The isolates further differed in API profiles 5307100 (21 isolates), 1307100 (4 isolates), 1305100 (2 isolates), 1307120 (1 isolate) and 5305100 (1 isolate), with the main differences being in the tests for lysine decarboxyla...</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><span class="wp-workCard--action visible-if-viewed-by-owner inline-block" style="display: none;"><span class="js-profile-work-strip-edit-button-wrapper profile-work-strip-edit-button-wrapper" data-work-id="124133044"><a class="js-profile-work-strip-edit-button" tabindex="0"><span><i class="fa fa-pencil"></i></span><span>Edit</span></a></span></span><span id="work-strip-rankings-button-container"></span></div><div class="wp-workCard_item wp-workCard--stats"><span><span><span class="js-view-count view-count u-mr2x" data-work-id="124133044"><i class="fa fa-spinner fa-spin"></i></span><script>$(function () { var workId = 124133044; window.Academia.workViewCountsFetcher.queue(workId, function (count) { var description = window.$h.commaizeInt(count) + " " + window.$h.pluralize(count, 'View'); $(".js-view-count[data-work-id=124133044]").text(description); $(".js-view-count[data-work-id=124133044]").attr('title', description).tooltip(); }); });</script></span></span><span><span class="percentile-widget hidden"><span class="u-mr2x work-percentile"></span></span><script>$(function () { var workId = 124133044; window.Academia.workPercentilesFetcher.queue(workId, function (percentileText) { var container = $(".js-work-strip[data-work-id='124133044']"); container.find('.work-percentile').text(percentileText.charAt(0).toUpperCase() + percentileText.slice(1)); container.find('.percentile-widget').show(); container.find('.percentile-widget').removeClass('hidden'); }); });</script></span><span><script>$(function() { new Works.PaperRankView({ workId: 124133044, container: "", }); });</script></span></div><div id="work-strip-premium-row-container"></div></div></div><script> require.config({ waitSeconds: 90 })(["https://a.academia-assets.com/assets/wow_profile-f77ea15d77ce96025a6048a514272ad8becbad23c641fc2b3bd6e24ca6ff1932.js","https://a.academia-assets.com/assets/work_edit-ad038b8c047c1a8d4fa01b402d530ff93c45fee2137a149a4a5398bc8ad67560.js"], function() { // from javascript_helper.rb var dispatcherData = {} if (false){ window.WowProfile.dispatcher = window.WowProfile.dispatcher || _.clone(Backbone.Events); dispatcherData = { dispatcher: window.WowProfile.dispatcher, downloadLinkId: "-1" } } $('.js-work-strip[data-work-id=124133044]').each(function() { if (!$(this).data('initialized')) { new WowProfile.WorkStripView({ el: this, workJSON: {"id":124133044,"title":"Co‐existence of two Yersinia ruckeri biotypes and serotype O1a retrieved from rainbow trout (Oncorhynchus mykiss) farmed in Puno, Peru","translated_title":"","metadata":{"abstract":"Yersinia ruckeri causes important economic losses for rainbow trout (Oncorhynchus mykiss) farms worldwide. This bacterial disease is likely the most common among trout in Peru; however, no commercial vaccine is available nationally, which is, in part, due to a lack of information on the bacterium. The aim of the current study was to characterize 29 Y. ruckeri isolates sampled from seven cage‐reared farms in the Puno Region, the focal point for aquaculture activities in Peru. For this, samples were taken from fish with clinical signs (i.e. haemorrhages, uni‐ or bilateral exophthalmia, hyphaemia and/or melanosis). Notable among our findings was the existence of both Y. ruckeri biotype 1 (9 isolates) and biotype 2 (20 isolates; negative for sorbitol and Tween 80). The isolates further differed in API profiles 5307100 (21 isolates), 1307100 (4 isolates), 1305100 (2 isolates), 1307120 (1 isolate) and 5305100 (1 isolate), with the main differences being in the tests for lysine decarboxyla...","publisher":"Wiley","publication_name":"Journal of Fish Diseases"},"translated_abstract":"Yersinia ruckeri causes important economic losses for rainbow trout (Oncorhynchus mykiss) farms worldwide. This bacterial disease is likely the most common among trout in Peru; however, no commercial vaccine is available nationally, which is, in part, due to a lack of information on the bacterium. The aim of the current study was to characterize 29 Y. ruckeri isolates sampled from seven cage‐reared farms in the Puno Region, the focal point for aquaculture activities in Peru. For this, samples were taken from fish with clinical signs (i.e. haemorrhages, uni‐ or bilateral exophthalmia, hyphaemia and/or melanosis). 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src="https://attachments.academia-assets.com/110242897/thumbnails/1.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" href="https://www.academia.edu/113228152/Extended_spectrum_%CE%B2_lactamase_and_carbapenemase_genes_are_substantially_and_sequentially_reduced_during_conveyance_and_treatment_of_urban_sewage">Extended spectrum β-lactamase and carbapenemase genes are substantially and sequentially reduced during conveyance and treatment of urban sewage</a></div><div class="wp-workCard_item"><span>bioRxiv (Cold Spring Harbor Laboratory)</span><span>, Nov 12, 2020</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><a id="4f6fa00fefcce9f198e72043e4bfd56d" class="wp-workCard--action" rel="nofollow" data-click-track="profile-work-strip-download" 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quantitative observations of antibiotic resistance genes (ARGs) in urban water systems (UWSs) are lacking. We sampled three UWSs for clinically important extended spectrum β-lactamase (ESBL) and carbapenemase (CP) genes, mobile genetic elements and microbial communities. Sewage-especially from hospitals-carried substantial loads of ESBL and CP genes (10 6-10 7 per person equivalent), but those loads progressively declined along the UWS, resulting in minimal emissions (10 1-10 4 copies per person equivalent). Removal was primarily during sewage conveyance (65% ± 36%) rather than within sewage treatment (34% ± 23%). The ARGs clustered in groups based on their persistence; less persistent groups were associated to putative host taxa (especially Enterobacteriaceae and Moraxellaceae), while more persistent groups appear horizontally transferred as they correlated with mobile genetic elements. 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$(this).data('initialized', true); } }); $a.trackClickSource(".js-work-strip-work-link", "profile_work_strip") }); </script> <div class="js-work-strip profile--work_container" data-work-id="113228151"><div class="profile--work_thumbnail hidden-xs"><a class="js-work-strip-work-link" data-click-track="profile-work-strip-thumbnail" href="https://www.academia.edu/113228151/Experimental_Pseudomonas_anguilliseptica_infection_in_turbot_Psetta_maxima_L_a_histopathological_and_immunohistochemical_study"><img alt="Research paper thumbnail of Experimental Pseudomonas anguilliseptica infection in turbot Psetta maxima (L.): a histopathological and immunohistochemical study" class="work-thumbnail" src="https://attachments.academia-assets.com/110242844/thumbnails/1.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" href="https://www.academia.edu/113228151/Experimental_Pseudomonas_anguilliseptica_infection_in_turbot_Psetta_maxima_L_a_histopathological_and_immunohistochemical_study">Experimental Pseudomonas anguilliseptica infection in turbot Psetta maxima (L.): a histopathological and immunohistochemical study</a></div><div class="wp-workCard_item"><span>European Journal of Histochemistry</span><span>, Aug 17, 2009</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><a id="390426458d50f28f1f76b92529bd0a30" class="wp-workCard--action" rel="nofollow" data-click-track="profile-work-strip-download" data-download="{"attachment_id":110242844,"asset_id":113228151,"asset_type":"Work","button_location":"profile"}" href="https://www.academia.edu/attachments/110242844/download_file?st=MTczMjQxOTI1Niw4LjIyMi4yMDguMTQ2&s=profile"><span><i class="fa fa-arrow-down"></i></span><span>Download</span></a><span class="wp-workCard--action visible-if-viewed-by-owner inline-block" style="display: none;"><span class="js-profile-work-strip-edit-button-wrapper profile-work-strip-edit-button-wrapper" data-work-id="113228151"><a class="js-profile-work-strip-edit-button" tabindex="0"><span><i class="fa fa-pencil"></i></span><span>Edit</span></a></span></span><span id="work-strip-rankings-button-container"></span></div><div class="wp-workCard_item wp-workCard--stats"><span><span><span class="js-view-count view-count u-mr2x" data-work-id="113228151"><i class="fa fa-spinner fa-spin"></i></span><script>$(function () { var workId = 113228151; 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Turbot was found to be sensitive to i.p. challenge (1.7x10 6 CFU/fish) but no to bath exposure. The i.p. challenge induced septicaemic infection and mortality. Externally, moribund fish showed distended abdomen and pale areas at day 9. The gross pathological internal signs present were abundant ascitic fluid in the peritoneal cavity, pale and enlarged spleen, pale and friable liver, and congestive and dilated gut with yellowish exudates. On histopathological examination, bacterial invasion was common in all the tissues studied but the most prominent pathological changes were observed in gut, spleen and kidney after 7 day with features of necrosis. The immunohistochemical findings support the widespread localization of the bacteria after the i.p. injection since the P. anguilliseptica was detected in spleen from day 1 post injection, in liver, kidney and gut from day 4, in muscle from day 7 and in brain from day 9. 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$(this).data('initialized', true); } }); $a.trackClickSource(".js-work-strip-work-link", "profile_work_strip") }); </script> <div class="js-work-strip profile--work_container" data-work-id="113228143"><div class="profile--work_thumbnail hidden-xs"><a class="js-work-strip-work-link" data-click-track="profile-work-strip-thumbnail" href="https://www.academia.edu/113228143/Nearly_Complete_Genome_Sequence_of_Raoultella_ornithinolytica_Strain_MQB_Silv_108_Carrying_an_Uncommon_Extended_Spectrum_%CE%B2_Lactamase_like_bla_BEL_Gene"><img alt="Research paper thumbnail of Nearly Complete Genome Sequence of Raoultella ornithinolytica Strain MQB_Silv_108, Carrying an Uncommon Extended-Spectrum-β-Lactamase-like bla BEL Gene" class="work-thumbnail" src="https://attachments.academia-assets.com/110242895/thumbnails/1.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" href="https://www.academia.edu/113228143/Nearly_Complete_Genome_Sequence_of_Raoultella_ornithinolytica_Strain_MQB_Silv_108_Carrying_an_Uncommon_Extended_Spectrum_%CE%B2_Lactamase_like_bla_BEL_Gene">Nearly Complete Genome Sequence of Raoultella ornithinolytica Strain MQB_Silv_108, Carrying an Uncommon Extended-Spectrum-β-Lactamase-like bla BEL Gene</a></div><div class="wp-workCard_item"><span>Microbiology Resource Announcements</span></div><div class="wp-workCard_item"><span class="js-work-more-abstract-truncated">Raoultella ornithinolytica has become increasingly important in human diseases. Here, we report t...</span><a class="js-work-more-abstract" data-broccoli-component="work_strip.more_abstract" data-click-track="profile-work-strip-more-abstract" href="javascript:;"><span> more </span><span><i class="fa fa-caret-down"></i></span></a><span class="js-work-more-abstract-untruncated hidden">Raoultella ornithinolytica has become increasingly important in human diseases. Here, we report the nearly complete genome sequence of a multidrug-resistant strain, R. ornithinolytica MQB_Silv_108, which was isolated from the effluent from a domestic wastewater treatment plant in Spain. Therefore, its release into the environment poses a possible exposure risk for humans and animals.</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><a id="4598bfc32eb46905e502db25534bc721" class="wp-workCard--action" rel="nofollow" data-click-track="profile-work-strip-download" data-download="{"attachment_id":110242895,"asset_id":113228143,"asset_type":"Work","button_location":"profile"}" href="https://www.academia.edu/attachments/110242895/download_file?st=MTczMjQxOTI1Niw4LjIyMi4yMDguMTQ2&s=profile"><span><i class="fa fa-arrow-down"></i></span><span>Download</span></a><span class="wp-workCard--action visible-if-viewed-by-owner inline-block" style="display: none;"><span class="js-profile-work-strip-edit-button-wrapper profile-work-strip-edit-button-wrapper" data-work-id="113228143"><a class="js-profile-work-strip-edit-button" tabindex="0"><span><i class="fa fa-pencil"></i></span><span>Edit</span></a></span></span><span id="work-strip-rankings-button-container"></span></div><div class="wp-workCard_item wp-workCard--stats"><span><span><span class="js-view-count view-count u-mr2x" data-work-id="113228143"><i class="fa fa-spinner fa-spin"></i></span><script>$(function () { var workId = 113228143; window.Academia.workViewCountsFetcher.queue(workId, function (count) { var description = window.$h.commaizeInt(count) + " " + window.$h.pluralize(count, 'View'); $(".js-view-count[data-work-id=113228143]").text(description); $(".js-view-count[data-work-id=113228143]").attr('title', description).tooltip(); }); });</script></span></span><span><span class="percentile-widget hidden"><span class="u-mr2x work-percentile"></span></span><script>$(function () { var workId = 113228143; window.Academia.workPercentilesFetcher.queue(workId, function (percentileText) { var container = $(".js-work-strip[data-work-id='113228143']"); container.find('.work-percentile').text(percentileText.charAt(0).toUpperCase() + percentileText.slice(1)); container.find('.percentile-widget').show(); container.find('.percentile-widget').removeClass('hidden'); }); });</script></span><span><script>$(function() { new Works.PaperRankView({ workId: 113228143, container: "", }); });</script></span></div><div id="work-strip-premium-row-container"></div></div></div><script> require.config({ waitSeconds: 90 })(["https://a.academia-assets.com/assets/wow_profile-f77ea15d77ce96025a6048a514272ad8becbad23c641fc2b3bd6e24ca6ff1932.js","https://a.academia-assets.com/assets/work_edit-ad038b8c047c1a8d4fa01b402d530ff93c45fee2137a149a4a5398bc8ad67560.js"], function() { // from javascript_helper.rb var dispatcherData = {} if (true){ window.WowProfile.dispatcher = window.WowProfile.dispatcher || _.clone(Backbone.Events); dispatcherData = { dispatcher: window.WowProfile.dispatcher, downloadLinkId: "4598bfc32eb46905e502db25534bc721" } } $('.js-work-strip[data-work-id=113228143]').each(function() { if (!$(this).data('initialized')) { new WowProfile.WorkStripView({ el: this, workJSON: {"id":113228143,"title":"Nearly Complete Genome Sequence of Raoultella ornithinolytica Strain MQB_Silv_108, Carrying an Uncommon Extended-Spectrum-β-Lactamase-like bla BEL Gene","translated_title":"","metadata":{"abstract":"Raoultella ornithinolytica has become increasingly important in human diseases. 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Therefore, its release into the environment poses a possible exposure risk for humans and animals.","internal_url":"https://www.academia.edu/113228143/Nearly_Complete_Genome_Sequence_of_Raoultella_ornithinolytica_Strain_MQB_Silv_108_Carrying_an_Uncommon_Extended_Spectrum_%CE%B2_Lactamase_like_bla_BEL_Gene","translated_internal_url":"","created_at":"2024-01-09T08:19:24.798-08:00","preview_url":null,"current_user_can_edit":null,"current_user_is_owner":null,"owner_id":29194678,"coauthors_can_edit":true,"document_type":"paper","co_author_tags":[],"downloadable_attachments":[{"id":110242895,"title":"","file_type":"pdf","scribd_thumbnail_url":"https://attachments.academia-assets.com/110242895/thumbnails/1.jpg","file_name":"fulltext.pdf","download_url":"https://www.academia.edu/attachments/110242895/download_file?st=MTczMjQxOTI1Niw4LjIyMi4yMDguMTQ2&","bulk_download_file_name":"Nearly_Complete_Genome_Sequence_of_Raoul.pdf","bulk_download_url":"https://d1wqtxts1xzle7.cloudfront.net/110242895/fulltext-libre.pdf?1704818772=\u0026response-content-disposition=attachment%3B+filename%3DNearly_Complete_Genome_Sequence_of_Raoul.pdf\u0026Expires=1731455219\u0026Signature=aK-hfa-Y56tDcnoH-W2QQOGb12KetFOkhkXWBc2OKr1bI8JLjxApqFcmebp~rme6A7GCM-xUrU4znk4WLfbvMFkCAmTK1TjZWVF0PwbJl8plrUPvDRON4cdjRQa7XFutOUlboysTvtSwYdp5QtsELtQ7bEac7jKv~bLsiMGlb7UBURq-yq1zWPYU~b9BvBlqDfvvJxvO-fzWQaZpGR9AgnUeFvB7v4CZHAS-mFXsVaKAhnjZqjo-V4DAe-NizunBg9g1tu0cYVQsLI3gogen066DalYB5sy-tlVNtlh2jEci9U0v-6xzFh6BcZtJLiQIefrP7~rwlq4M4jQ4FCUfZg__\u0026Key-Pair-Id=APKAJLOHF5GGSLRBV4ZA"}],"slug":"Nearly_Complete_Genome_Sequence_of_Raoultella_ornithinolytica_Strain_MQB_Silv_108_Carrying_an_Uncommon_Extended_Spectrum_β_Lactamase_like_bla_BEL_Gene","translated_slug":"","page_count":3,"language":"en","content_type":"Work","owner":{"id":29194678,"first_name":"Jesus","middle_initials":null,"last_name":"Romalde","page_name":"JesusRomalde","domain_name":"usc-es","created_at":"2015-04-07T10:49:28.579-07:00","display_name":"Jesus Romalde","url":"https://usc-es.academia.edu/JesusRomalde"},"attachments":[{"id":110242895,"title":"","file_type":"pdf","scribd_thumbnail_url":"https://attachments.academia-assets.com/110242895/thumbnails/1.jpg","file_name":"fulltext.pdf","download_url":"https://www.academia.edu/attachments/110242895/download_file?st=MTczMjQxOTI1Niw4LjIyMi4yMDguMTQ2&","bulk_download_file_name":"Nearly_Complete_Genome_Sequence_of_Raoul.pdf","bulk_download_url":"https://d1wqtxts1xzle7.cloudfront.net/110242895/fulltext-libre.pdf?1704818772=\u0026response-content-disposition=attachment%3B+filename%3DNearly_Complete_Genome_Sequence_of_Raoul.pdf\u0026Expires=1731455219\u0026Signature=aK-hfa-Y56tDcnoH-W2QQOGb12KetFOkhkXWBc2OKr1bI8JLjxApqFcmebp~rme6A7GCM-xUrU4znk4WLfbvMFkCAmTK1TjZWVF0PwbJl8plrUPvDRON4cdjRQa7XFutOUlboysTvtSwYdp5QtsELtQ7bEac7jKv~bLsiMGlb7UBURq-yq1zWPYU~b9BvBlqDfvvJxvO-fzWQaZpGR9AgnUeFvB7v4CZHAS-mFXsVaKAhnjZqjo-V4DAe-NizunBg9g1tu0cYVQsLI3gogen066DalYB5sy-tlVNtlh2jEci9U0v-6xzFh6BcZtJLiQIefrP7~rwlq4M4jQ4FCUfZg__\u0026Key-Pair-Id=APKAJLOHF5GGSLRBV4ZA"}],"research_interests":[{"id":159,"name":"Microbiology","url":"https://www.academia.edu/Documents/in/Microbiology"},{"id":94123,"name":"Multidrug Resistance","url":"https://www.academia.edu/Documents/in/Multidrug_Resistance"},{"id":176486,"name":"Genome","url":"https://www.academia.edu/Documents/in/Genome"},{"id":320555,"name":"Whole Genome Sequencing","url":"https://www.academia.edu/Documents/in/Whole_Genome_Sequencing"},{"id":732028,"name":"Genome sequence","url":"https://www.academia.edu/Documents/in/Genome_sequence"},{"id":2423737,"name":"Raoultella ornithinolytica","url":"https://www.academia.edu/Documents/in/Raoultella_ornithinolytica"}],"urls":[{"id":38388396,"url":"https://journals.asm.org/doi/pdf/10.1128/mra.01012-22"}]}, dispatcherData: dispatcherData }); $(this).data('initialized', true); } }); $a.trackClickSource(".js-work-strip-work-link", "profile_work_strip") }); </script> <div class="js-work-strip profile--work_container" data-work-id="113228141"><div class="profile--work_thumbnail hidden-xs"><a class="js-work-strip-work-link" data-click-track="profile-work-strip-thumbnail" href="https://www.academia.edu/113228141/First_description_of_Yersinia_ruckeri_serotype_O2_in_Spain"><img alt="Research paper thumbnail of First description of Yersinia ruckeri serotype O2 in Spain" class="work-thumbnail" src="https://attachments.academia-assets.com/110242840/thumbnails/1.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" href="https://www.academia.edu/113228141/First_description_of_Yersinia_ruckeri_serotype_O2_in_Spain">First description of Yersinia ruckeri serotype O2 in Spain</a></div><div class="wp-workCard_item"><span>Bulletin of The European Association of Fish Pathologists</span><span>, 2003</span></div><div class="wp-workCard_item"><span class="js-work-more-abstract-truncated">Yersinia ruckeri was isolated from diseased unvaccinated rainbow trout obtained from a farm in wh...</span><a class="js-work-more-abstract" data-broccoli-component="work_strip.more_abstract" data-click-track="profile-work-strip-more-abstract" href="javascript:;"><span> more </span><span><i class="fa fa-caret-down"></i></span></a><span class="js-work-more-abstract-untruncated hidden">Yersinia ruckeri was isolated from diseased unvaccinated rainbow trout obtained from a farm in which vaccination against enteric redmouth disease (ERM) has been systematically performed for more than 10 years. Affected fish presented typical signs of yersiniosis including exophthalmia and eye haemorrhages. Serological characterization of the isolate demonstrated that it belongs to the serotype O2b of this bacterial pathogen, which was never before described in Spain.</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><a id="cd5e529b993ab80e10e5e4f4d0ca22e7" class="wp-workCard--action" rel="nofollow" data-click-track="profile-work-strip-download" data-download="{"attachment_id":110242840,"asset_id":113228141,"asset_type":"Work","button_location":"profile"}" href="https://www.academia.edu/attachments/110242840/download_file?st=MTczMjQxOTI1Niw4LjIyMi4yMDguMTQ2&s=profile"><span><i class="fa fa-arrow-down"></i></span><span>Download</span></a><span class="wp-workCard--action visible-if-viewed-by-owner inline-block" style="display: none;"><span class="js-profile-work-strip-edit-button-wrapper profile-work-strip-edit-button-wrapper" data-work-id="113228141"><a class="js-profile-work-strip-edit-button" tabindex="0"><span><i class="fa fa-pencil"></i></span><span>Edit</span></a></span></span><span id="work-strip-rankings-button-container"></span></div><div class="wp-workCard_item wp-workCard--stats"><span><span><span class="js-view-count view-count u-mr2x" data-work-id="113228141"><i class="fa fa-spinner fa-spin"></i></span><script>$(function () { var workId = 113228141; window.Academia.workViewCountsFetcher.queue(workId, function (count) { var description = window.$h.commaizeInt(count) + " " + window.$h.pluralize(count, 'View'); $(".js-view-count[data-work-id=113228141]").text(description); $(".js-view-count[data-work-id=113228141]").attr('title', description).tooltip(); }); });</script></span></span><span><span class="percentile-widget hidden"><span class="u-mr2x work-percentile"></span></span><script>$(function () { var workId = 113228141; window.Academia.workPercentilesFetcher.queue(workId, function (percentileText) { var container = $(".js-work-strip[data-work-id='113228141']"); container.find('.work-percentile').text(percentileText.charAt(0).toUpperCase() + percentileText.slice(1)); container.find('.percentile-widget').show(); container.find('.percentile-widget').removeClass('hidden'); }); });</script></span><span><script>$(function() { new Works.PaperRankView({ workId: 113228141, container: "", }); });</script></span></div><div id="work-strip-premium-row-container"></div></div></div><script> require.config({ waitSeconds: 90 })(["https://a.academia-assets.com/assets/wow_profile-f77ea15d77ce96025a6048a514272ad8becbad23c641fc2b3bd6e24ca6ff1932.js","https://a.academia-assets.com/assets/work_edit-ad038b8c047c1a8d4fa01b402d530ff93c45fee2137a149a4a5398bc8ad67560.js"], function() { // from javascript_helper.rb var dispatcherData = {} if (true){ window.WowProfile.dispatcher = window.WowProfile.dispatcher || _.clone(Backbone.Events); dispatcherData = { dispatcher: window.WowProfile.dispatcher, downloadLinkId: "cd5e529b993ab80e10e5e4f4d0ca22e7" } } $('.js-work-strip[data-work-id=113228141]').each(function() { if (!$(this).data('initialized')) { new WowProfile.WorkStripView({ el: this, workJSON: {"id":113228141,"title":"First description of Yersinia ruckeri serotype O2 in Spain","translated_title":"","metadata":{"abstract":"Yersinia ruckeri was isolated from diseased unvaccinated rainbow trout obtained from a farm in which vaccination against enteric redmouth disease (ERM) has been systematically performed for more than 10 years. 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Serological characterization of the isolate demonstrated that it belongs to the serotype O2b of this bacterial pathogen, which was never before described in Spain.","internal_url":"https://www.academia.edu/113228141/First_description_of_Yersinia_ruckeri_serotype_O2_in_Spain","translated_internal_url":"","created_at":"2024-01-09T08:19:24.581-08:00","preview_url":null,"current_user_can_edit":null,"current_user_is_owner":null,"owner_id":29194678,"coauthors_can_edit":true,"document_type":"paper","co_author_tags":[],"downloadable_attachments":[{"id":110242840,"title":"","file_type":"pdf","scribd_thumbnail_url":"https://attachments.academia-assets.com/110242840/thumbnails/1.jpg","file_name":"23_135.pdf","download_url":"https://www.academia.edu/attachments/110242840/download_file?st=MTczMjQxOTI1Niw4LjIyMi4yMDguMTQ2&","bulk_download_file_name":"First_description_of_Yersinia_ruckeri_se.pdf","bulk_download_url":"https://d1wqtxts1xzle7.cloudfront.net/110242840/23_135-libre.pdf?1704817202=\u0026response-content-disposition=attachment%3B+filename%3DFirst_description_of_Yersinia_ruckeri_se.pdf\u0026Expires=1731455219\u0026Signature=f1XWVo0tJfA1DtNuOp0c2pfK2l8nfeUc8CAPZ-nodgj2BPVpP0kXdCLl~yOkCFulXCUnsbVs5kAKLx6khYy0BtQDFhAkZsiDP85yEfos9KOkPhyG9R4xJMCxpEGAWYVa-NMBiV6PeQa0aMHpPS5sMVus8Bd9CtlSe0-Pf1panxdq4McZzR8m8DejXEqNOzL-l0wFf6VoEjYUxksr~kBcUyHxMyekmQZeSlXJfbnKeyCuHOluD-v3-GmAp5zCSh~RfCZmqf7qmgRo193iXaCW1zdZVV9xKNsqZwRdFvulFWue5ML5u4D04Jj5rLt6jvAEb~fvtbV991HChvz9VUVlng__\u0026Key-Pair-Id=APKAJLOHF5GGSLRBV4ZA"}],"slug":"First_description_of_Yersinia_ruckeri_serotype_O2_in_Spain","translated_slug":"","page_count":4,"language":"en","content_type":"Work","owner":{"id":29194678,"first_name":"Jesus","middle_initials":null,"last_name":"Romalde","page_name":"JesusRomalde","domain_name":"usc-es","created_at":"2015-04-07T10:49:28.579-07:00","display_name":"Jesus Romalde","url":"https://usc-es.academia.edu/JesusRomalde"},"attachments":[{"id":110242840,"title":"","file_type":"pdf","scribd_thumbnail_url":"https://attachments.academia-assets.com/110242840/thumbnails/1.jpg","file_name":"23_135.pdf","download_url":"https://www.academia.edu/attachments/110242840/download_file?st=MTczMjQxOTI1Niw4LjIyMi4yMDguMTQ2&","bulk_download_file_name":"First_description_of_Yersinia_ruckeri_se.pdf","bulk_download_url":"https://d1wqtxts1xzle7.cloudfront.net/110242840/23_135-libre.pdf?1704817202=\u0026response-content-disposition=attachment%3B+filename%3DFirst_description_of_Yersinia_ruckeri_se.pdf\u0026Expires=1731455219\u0026Signature=f1XWVo0tJfA1DtNuOp0c2pfK2l8nfeUc8CAPZ-nodgj2BPVpP0kXdCLl~yOkCFulXCUnsbVs5kAKLx6khYy0BtQDFhAkZsiDP85yEfos9KOkPhyG9R4xJMCxpEGAWYVa-NMBiV6PeQa0aMHpPS5sMVus8Bd9CtlSe0-Pf1panxdq4McZzR8m8DejXEqNOzL-l0wFf6VoEjYUxksr~kBcUyHxMyekmQZeSlXJfbnKeyCuHOluD-v3-GmAp5zCSh~RfCZmqf7qmgRo193iXaCW1zdZVV9xKNsqZwRdFvulFWue5ML5u4D04Jj5rLt6jvAEb~fvtbV991HChvz9VUVlng__\u0026Key-Pair-Id=APKAJLOHF5GGSLRBV4ZA"},{"id":110242839,"title":"","file_type":"pdf","scribd_thumbnail_url":"https://attachments.academia-assets.com/110242839/thumbnails/1.jpg","file_name":"23_135.pdf","download_url":"https://www.academia.edu/attachments/110242839/download_file","bulk_download_file_name":"First_description_of_Yersinia_ruckeri_se.pdf","bulk_download_url":"https://d1wqtxts1xzle7.cloudfront.net/110242839/23_135-libre.pdf?1704817202=\u0026response-content-disposition=attachment%3B+filename%3DFirst_description_of_Yersinia_ruckeri_se.pdf\u0026Expires=1731455219\u0026Signature=fgt9Mir5aWI8UnibGKF4QJIidaiCl6ZJeRLzAw9KvAISEBcczaRph0PAITD7~uQWdm1AkXC~2EIPRwK6~e9sOwDSI8YBW92NkOrNQqNqDajuGn7ZxzbCLUKXDbJYklkYmS~VW7RpeV9Bm~L~H1sEkuocnzQZEbGJcmiHQhz1~nD8l8D-8~7kYy9w0zSs0zL-NchRcQ0ZeTs~Mxye~DKmgDSUrcU0RhxComVoms4iR8HJb-Y2jNFFEybrhEw7MKSXjIEYq9YvNtzNseDJfY~jW7nmg8Prqwe9VkxH0Yc0~CnG3i9Wld8V7eY2gmJvVV7ZWUUPZxFKhRRQrFUODaWDBA__\u0026Key-Pair-Id=APKAJLOHF5GGSLRBV4ZA"}],"research_interests":[{"id":159,"name":"Microbiology","url":"https://www.academia.edu/Documents/in/Microbiology"},{"id":7710,"name":"Biology","url":"https://www.academia.edu/Documents/in/Biology"},{"id":164268,"name":"Pathogen","url":"https://www.academia.edu/Documents/in/Pathogen"},{"id":437726,"name":"Rainbow trout","url":"https://www.academia.edu/Documents/in/Rainbow_trout"},{"id":1690438,"name":"Yersinia ruckeri","url":"https://www.academia.edu/Documents/in/Yersinia_ruckeri"},{"id":2058665,"name":"Serotype","url":"https://www.academia.edu/Documents/in/Serotype"},{"id":3990429,"name":"Yersinia","url":"https://www.academia.edu/Documents/in/Yersinia"},{"id":4076009,"name":"Yersiniosis","url":"https://www.academia.edu/Documents/in/Yersiniosis"}],"urls":[{"id":38388395,"url":"http://eafp.org/download/2003-Volume23/Issue%203/23_135.pdf"}]}, dispatcherData: dispatcherData }); $(this).data('initialized', true); } }); $a.trackClickSource(".js-work-strip-work-link", "profile_work_strip") }); </script> <div class="js-work-strip profile--work_container" data-work-id="113228137"><div class="profile--work_thumbnail hidden-xs"><a class="js-work-strip-work-link" data-click-track="profile-work-strip-thumbnail" href="https://www.academia.edu/113228137/Lactococcus_garvieae_an_emerging_pathogen_for_the_Portuguese_trout_culture"><img alt="Research paper thumbnail of Lactococcus garvieae, an emerging pathogen for the Portuguese trout culture" class="work-thumbnail" src="https://attachments.academia-assets.com/110242885/thumbnails/1.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" href="https://www.academia.edu/113228137/Lactococcus_garvieae_an_emerging_pathogen_for_the_Portuguese_trout_culture">Lactococcus garvieae, an emerging pathogen for the Portuguese trout culture</a></div><div class="wp-workCard_item"><span>Bulletin of The European Association of Fish Pathologists</span><span>, 2004</span></div><div class="wp-workCard_item"><span class="js-work-more-abstract-truncated">We report here the first description in North Portugal of epizootic episodes of lactococcosis cau...</span><a class="js-work-more-abstract" data-broccoli-component="work_strip.more_abstract" data-click-track="profile-work-strip-more-abstract" href="javascript:;"><span> more </span><span><i class="fa fa-caret-down"></i></span></a><span class="js-work-more-abstract-untruncated hidden">We report here the first description in North Portugal of epizootic episodes of lactococcosis causing important mortalities in cultured rainbow trout associated with high water temperatures. The outbreaks that occurred during the warm seasons of 2002 and 2003 affected all size fish, reaching up to 90% mortality in some farms. The taxonomic studies of the isolates obtained indicated that they belonged to Lactococcus garvieae. This identification was confirmed by PCR amplification using specific primers. 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$(this).data('initialized', true); } }); $a.trackClickSource(".js-work-strip-work-link", "profile_work_strip") }); </script> <div class="js-work-strip profile--work_container" data-work-id="113228135"><div class="profile--work_thumbnail hidden-xs"><a class="js-work-strip-work-link" data-click-track="profile-work-strip-thumbnail" href="https://www.academia.edu/113228135/World_Society_for_Virology_first_international_conference_Tackling_global_virus_epidemics"><img alt="Research paper thumbnail of World Society for Virology first international conference: Tackling global virus epidemics" class="work-thumbnail" src="https://a.academia-assets.com/images/blank-paper.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" href="https://www.academia.edu/113228135/World_Society_for_Virology_first_international_conference_Tackling_global_virus_epidemics">World Society for Virology first international conference: Tackling global virus epidemics</a></div><div class="wp-workCard_item"><span>Virology</span><span>, 2021</span></div><div class="wp-workCard_item"><span class="js-work-more-abstract-truncated">This communication summarizes the presentations given at the 1st international conference of the ...</span><a class="js-work-more-abstract" data-broccoli-component="work_strip.more_abstract" data-click-track="profile-work-strip-more-abstract" href="javascript:;"><span> more </span><span><i class="fa fa-caret-down"></i></span></a><span class="js-work-more-abstract-untruncated hidden">This communication summarizes the presentations given at the 1st international conference of the World Society for Virology (WSV) held virtually during 16–18 June 2021, under the theme of tackling global viral epidemics. The purpose of this biennial meeting is to foster international collaborations and address important viral epidemics in different hosts. The first day included two sessions exclusively on SARS-CoV-2 and COVID-19. The other two days included one plenary and three parallel sessions each. Last not least, 16 sessions covered on-demand submitted talks. 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$(this).data('initialized', true); } }); $a.trackClickSource(".js-work-strip-work-link", "profile_work_strip") }); </script> <div class="js-work-strip profile--work_container" data-work-id="113228132"><div class="profile--work_thumbnail hidden-xs"><a class="js-work-strip-work-link" data-click-track="profile-work-strip-thumbnail" href="https://www.academia.edu/113228132/Monitoring_emergence_of_SARS_CoV_2_B_1_1_7_Variant_through_the_Spanish_National_SARS_CoV_2_Wastewater_Surveillance_System_VATar_COVID_19_from_December_2020_to_March_2021"><img alt="Research paper thumbnail of Monitoring emergence of SARS-CoV-2 B.1.1.7 Variant through the Spanish National SARS-CoV-2 Wastewater Surveillance System (VATar COVID-19) from December 2020 to March 2021" class="work-thumbnail" src="https://attachments.academia-assets.com/110242890/thumbnails/1.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" href="https://www.academia.edu/113228132/Monitoring_emergence_of_SARS_CoV_2_B_1_1_7_Variant_through_the_Spanish_National_SARS_CoV_2_Wastewater_Surveillance_System_VATar_COVID_19_from_December_2020_to_March_2021">Monitoring emergence of SARS-CoV-2 B.1.1.7 Variant through the Spanish National SARS-CoV-2 Wastewater Surveillance System (VATar COVID-19) from December 2020 to March 2021</a></div><div class="wp-workCard_item"><span class="js-work-more-abstract-truncated">ABSTRACTBackgroundSince its first identification in the United Kingdom in late 2020, the highly t...</span><a class="js-work-more-abstract" data-broccoli-component="work_strip.more_abstract" data-click-track="profile-work-strip-more-abstract" href="javascript:;"><span> more </span><span><i class="fa fa-caret-down"></i></span></a><span class="js-work-more-abstract-untruncated hidden">ABSTRACTBackgroundSince its first identification in the United Kingdom in late 2020, the highly transmissible B.1.1.7 variant of SARS-CoV-2, become dominant in several European countries raising great concern.AimThe aim of this study was to develop a duplex real-time RT-qPCR assay to detect, discriminate and quantitate SARS-CoV-2 variants containing one of its mutation signatures, the ΔHV69/70 deletion, to trace the community circulation of the B.1.1.7 variant in Spain through the Spanish National SARS-CoV-2 Wastewater Surveillance System (VATar COVID-19).ResultsB.1.1.7 variant was first detected in sewage from the Southern city of Málaga (Andalucía) in week 20_52, and multiple introductions during Christmas holidays were inferred in different parts of the country, earlier than clinical epidemiological reporting by the local authorities. Wastewater-based B.1.1.7 tracking showed a good correlation with clinical data and provided information at the local level. 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$(this).data('initialized', true); } }); $a.trackClickSource(".js-work-strip-work-link", "profile_work_strip") }); </script> <div class="js-work-strip profile--work_container" data-work-id="113228130"><div class="profile--work_thumbnail hidden-xs"><a class="js-work-strip-work-link" data-click-track="profile-work-strip-thumbnail" href="https://www.academia.edu/113228130/Aliarcobacter_vitoriensis_sp_nov_isolated_from_carrot_and_urban_wastewater"><img alt="Research paper thumbnail of Aliarcobacter vitoriensis sp. nov., isolated from carrot and urban wastewater" class="work-thumbnail" src="https://a.academia-assets.com/images/blank-paper.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" href="https://www.academia.edu/113228130/Aliarcobacter_vitoriensis_sp_nov_isolated_from_carrot_and_urban_wastewater">Aliarcobacter vitoriensis sp. nov., isolated from carrot and urban wastewater</a></div><div class="wp-workCard_item"><span>Systematic and Applied Microbiology</span><span>, 2020</span></div><div class="wp-workCard_item"><span class="js-work-more-abstract-truncated">Two isolates, one recovered from a carrot and another one from urban wastewater, were characteriz...</span><a class="js-work-more-abstract" data-broccoli-component="work_strip.more_abstract" data-click-track="profile-work-strip-more-abstract" href="javascript:;"><span> more </span><span><i class="fa fa-caret-down"></i></span></a><span class="js-work-more-abstract-untruncated hidden">Two isolates, one recovered from a carrot and another one from urban wastewater, were characterized using a polyphasic approach. Phylogenetic analysis based on 16S rRNA gene sequences revealed that both isolates clustered together, and were most closely related to Aliarcobacter lanthieri. Multilocus phylogenetic analysis (MLPA) using the concatenated sequences of five housekeeping genes (atpA, gyrA, gyrB, hsp60 and rpoB) suggested that these isolates formed a distinct phylogenetic lineage among the genera derived from the former genus Arcobacter. Whole-genome sequence, in silico DNA-DNA hybridization (isDDH) and the average nucleotide identity (ANI) value between the genome of strain F199T and those of related species confirmed that these isolates represent a novel species. These strains can be differentiated from its phylogenetically closest species A. lanthieri by its inability to growth on 1% glycine and by their enzyme activity of esterase lipase (C8) and acid phosphatase. Our results, by the application of a polyphasic analysis, confirmed that these two isolates represent a novel species of the genus Aliarcobacter, for which the name Aliarcobacter vitoriensis sp. nov. is proposed. 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Our results, by the application of a polyphasic analysis, confirmed that these two isolates represent a novel species of the genus Aliarcobacter, for which the name Aliarcobacter vitoriensis sp. nov. is proposed. The type strain is F199T (=CECT 9230T=LMG 30050T).","publisher":"Elsevier BV","publication_date":{"day":null,"month":null,"year":2020,"errors":{}},"publication_name":"Systematic and Applied Microbiology"},"translated_abstract":"Two isolates, one recovered from a carrot and another one from urban wastewater, were characterized using a polyphasic approach. Phylogenetic analysis based on 16S rRNA gene sequences revealed that both isolates clustered together, and were most closely related to Aliarcobacter lanthieri. Multilocus phylogenetic analysis (MLPA) using the concatenated sequences of five housekeeping genes (atpA, gyrA, gyrB, hsp60 and rpoB) suggested that these isolates formed a distinct phylogenetic lineage among the genera derived from the former genus Arcobacter. Whole-genome sequence, in silico DNA-DNA hybridization (isDDH) and the average nucleotide identity (ANI) value between the genome of strain F199T and those of related species confirmed that these isolates represent a novel species. These strains can be differentiated from its phylogenetically closest species A. lanthieri by its inability to growth on 1% glycine and by their enzyme activity of esterase lipase (C8) and acid phosphatase. Our results, by the application of a polyphasic analysis, confirmed that these two isolates represent a novel species of the genus Aliarcobacter, for which the name Aliarcobacter vitoriensis sp. nov. is proposed. The type strain is F199T (=CECT 9230T=LMG 30050T).","internal_url":"https://www.academia.edu/113228130/Aliarcobacter_vitoriensis_sp_nov_isolated_from_carrot_and_urban_wastewater","translated_internal_url":"","created_at":"2024-01-09T08:19:23.018-08:00","preview_url":null,"current_user_can_edit":null,"current_user_is_owner":null,"owner_id":29194678,"coauthors_can_edit":true,"document_type":"paper","co_author_tags":[],"downloadable_attachments":[],"slug":"Aliarcobacter_vitoriensis_sp_nov_isolated_from_carrot_and_urban_wastewater","translated_slug":"","page_count":null,"language":"en","content_type":"Work","owner":{"id":29194678,"first_name":"Jesus","middle_initials":null,"last_name":"Romalde","page_name":"JesusRomalde","domain_name":"usc-es","created_at":"2015-04-07T10:49:28.579-07:00","display_name":"Jesus Romalde","url":"https://usc-es.academia.edu/JesusRomalde"},"attachments":[],"research_interests":[{"id":155,"name":"Evolutionary Biology","url":"https://www.academia.edu/Documents/in/Evolutionary_Biology"},{"id":159,"name":"Microbiology","url":"https://www.academia.edu/Documents/in/Microbiology"},{"id":4207,"name":"Phylogenetics","url":"https://www.academia.edu/Documents/in/Phylogenetics"},{"id":7710,"name":"Biology","url":"https://www.academia.edu/Documents/in/Biology"},{"id":26327,"name":"Medicine","url":"https://www.academia.edu/Documents/in/Medicine"},{"id":550697,"name":"Phylogenetic Tree","url":"https://www.academia.edu/Documents/in/Phylogenetic_Tree"}],"urls":[{"id":38388385,"url":"https://api.elsevier.com/content/article/PII:S0723202020300424?httpAccept=text/xml"}]}, dispatcherData: dispatcherData }); $(this).data('initialized', true); } }); $a.trackClickSource(".js-work-strip-work-link", "profile_work_strip") }); </script> <div class="js-work-strip profile--work_container" data-work-id="113228129"><div class="profile--work_thumbnail hidden-xs"><a class="js-work-strip-work-link" data-click-track="profile-work-strip-thumbnail" href="https://www.academia.edu/113228129/Phenotypic_antigenic_and_molecular_characterization_of_Pasteurella_piscicida_strains_isolated_from_fish"><img alt="Research paper thumbnail of Phenotypic, antigenic, and molecular characterization of Pasteurella piscicida strains isolated from fish" class="work-thumbnail" src="https://attachments.academia-assets.com/110242896/thumbnails/1.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" href="https://www.academia.edu/113228129/Phenotypic_antigenic_and_molecular_characterization_of_Pasteurella_piscicida_strains_isolated_from_fish">Phenotypic, antigenic, and molecular characterization of Pasteurella piscicida strains isolated from fish</a></div><div class="wp-workCard_item"><span>Applied and Environmental Microbiology</span><span>, 1992</span></div><div class="wp-workCard_item"><span class="js-work-more-abstract-truncated">We compared Pasteurella piscicida strains isolated from different fish species in several Europea...</span><a class="js-work-more-abstract" data-broccoli-component="work_strip.more_abstract" data-click-track="profile-work-strip-more-abstract" href="javascript:;"><span> more </span><span><i class="fa fa-caret-down"></i></span></a><span class="js-work-more-abstract-untruncated hidden">We compared Pasteurella piscicida strains isolated from different fish species in several European countries with strains isolated in Japan and the United States. The taxonomic analysis revealed that, regardless of the geographic origin and source of isolation, all the strains exhibited the same biochemical and physiological characteristics. Serological assays with different rabbit antisera demonstrated a high level of antigenic similarity among strains, with cross-agglutination titers of 20,480 to 40,960. This serological homogeneity was supported by the lipopolysaccharide (LPS) and membrane protein profiles. All the P. piscicida strains had the same electrophoretic LPS pattern, showing O side chains with a ladder-like structure, and shared at least four major outer membrane proteins, of 20, 30, 42, and 53 kDa. Western blot (immunoblot) analysis with LPS and protein indicated that all the P. piscicida strains are immunologically related. In addition, the chromosomal DNA fingerprint...</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><a id="a1d8a4dbaaff7b5234d3a1ebd7a28a56" class="wp-workCard--action" rel="nofollow" data-click-track="profile-work-strip-download" data-download="{"attachment_id":110242896,"asset_id":113228129,"asset_type":"Work","button_location":"profile"}" href="https://www.academia.edu/attachments/110242896/download_file?st=MTczMjQxOTI1Niw4LjIyMi4yMDguMTQ2&s=profile"><span><i class="fa fa-arrow-down"></i></span><span>Download</span></a><span class="wp-workCard--action visible-if-viewed-by-owner inline-block" style="display: none;"><span class="js-profile-work-strip-edit-button-wrapper profile-work-strip-edit-button-wrapper" data-work-id="113228129"><a class="js-profile-work-strip-edit-button" tabindex="0"><span><i class="fa fa-pencil"></i></span><span>Edit</span></a></span></span><span id="work-strip-rankings-button-container"></span></div><div class="wp-workCard_item wp-workCard--stats"><span><span><span class="js-view-count view-count u-mr2x" data-work-id="113228129"><i class="fa fa-spinner fa-spin"></i></span><script>$(function () { var workId = 113228129; window.Academia.workViewCountsFetcher.queue(workId, function (count) { var description = window.$h.commaizeInt(count) + " " + window.$h.pluralize(count, 'View'); $(".js-view-count[data-work-id=113228129]").text(description); $(".js-view-count[data-work-id=113228129]").attr('title', description).tooltip(); }); });</script></span></span><span><span class="percentile-widget hidden"><span class="u-mr2x work-percentile"></span></span><script>$(function () { var workId = 113228129; window.Academia.workPercentilesFetcher.queue(workId, function (percentileText) { var container = $(".js-work-strip[data-work-id='113228129']"); container.find('.work-percentile').text(percentileText.charAt(0).toUpperCase() + percentileText.slice(1)); container.find('.percentile-widget').show(); container.find('.percentile-widget').removeClass('hidden'); }); });</script></span><span><script>$(function() { new Works.PaperRankView({ workId: 113228129, container: "", }); });</script></span></div><div id="work-strip-premium-row-container"></div></div></div><script> require.config({ waitSeconds: 90 })(["https://a.academia-assets.com/assets/wow_profile-f77ea15d77ce96025a6048a514272ad8becbad23c641fc2b3bd6e24ca6ff1932.js","https://a.academia-assets.com/assets/work_edit-ad038b8c047c1a8d4fa01b402d530ff93c45fee2137a149a4a5398bc8ad67560.js"], function() { // from javascript_helper.rb var dispatcherData = {} if (true){ window.WowProfile.dispatcher = window.WowProfile.dispatcher || _.clone(Backbone.Events); dispatcherData = { dispatcher: window.WowProfile.dispatcher, downloadLinkId: "a1d8a4dbaaff7b5234d3a1ebd7a28a56" } } $('.js-work-strip[data-work-id=113228129]').each(function() { if (!$(this).data('initialized')) { new WowProfile.WorkStripView({ el: this, workJSON: {"id":113228129,"title":"Phenotypic, antigenic, and molecular characterization of Pasteurella piscicida strains isolated from fish","translated_title":"","metadata":{"abstract":"We compared Pasteurella piscicida strains isolated from different fish species in several European countries with strains isolated in Japan and the United States. The taxonomic analysis revealed that, regardless of the geographic origin and source of isolation, all the strains exhibited the same biochemical and physiological characteristics. Serological assays with different rabbit antisera demonstrated a high level of antigenic similarity among strains, with cross-agglutination titers of 20,480 to 40,960. This serological homogeneity was supported by the lipopolysaccharide (LPS) and membrane protein profiles. All the P. piscicida strains had the same electrophoretic LPS pattern, showing O side chains with a ladder-like structure, and shared at least four major outer membrane proteins, of 20, 30, 42, and 53 kDa. Western blot (immunoblot) analysis with LPS and protein indicated that all the P. piscicida strains are immunologically related. In addition, the chromosomal DNA fingerprint...","publisher":"American Society for Microbiology","publication_date":{"day":null,"month":null,"year":1992,"errors":{}},"publication_name":"Applied and Environmental Microbiology"},"translated_abstract":"We compared Pasteurella piscicida strains isolated from different fish species in several European countries with strains isolated in Japan and the United States. The taxonomic analysis revealed that, regardless of the geographic origin and source of isolation, all the strains exhibited the same biochemical and physiological characteristics. Serological assays with different rabbit antisera demonstrated a high level of antigenic similarity among strains, with cross-agglutination titers of 20,480 to 40,960. This serological homogeneity was supported by the lipopolysaccharide (LPS) and membrane protein profiles. All the P. piscicida strains had the same electrophoretic LPS pattern, showing O side chains with a ladder-like structure, and shared at least four major outer membrane proteins, of 20, 30, 42, and 53 kDa. Western blot (immunoblot) analysis with LPS and protein indicated that all the P. piscicida strains are immunologically related. In addition, the chromosomal DNA fingerprint...","internal_url":"https://www.academia.edu/113228129/Phenotypic_antigenic_and_molecular_characterization_of_Pasteurella_piscicida_strains_isolated_from_fish","translated_internal_url":"","created_at":"2024-01-09T08:19:22.808-08:00","preview_url":null,"current_user_can_edit":null,"current_user_is_owner":null,"owner_id":29194678,"coauthors_can_edit":true,"document_type":"paper","co_author_tags":[],"downloadable_attachments":[{"id":110242896,"title":"","file_type":"pdf","scribd_thumbnail_url":"https://attachments.academia-assets.com/110242896/thumbnails/1.jpg","file_name":"3316.full.pdf","download_url":"https://www.academia.edu/attachments/110242896/download_file?st=MTczMjQxOTI1Niw4LjIyMi4yMDguMTQ2&","bulk_download_file_name":"Phenotypic_antigenic_and_molecular_chara.pdf","bulk_download_url":"https://d1wqtxts1xzle7.cloudfront.net/110242896/3316.full-libre.pdf?1704818780=\u0026response-content-disposition=attachment%3B+filename%3DPhenotypic_antigenic_and_molecular_chara.pdf\u0026Expires=1731455219\u0026Signature=M46NoPbQd0~hdqgL7W9gkaoqiV6T9t~CBIfbUd8iLkpY2lMXmoVBq23xSZYUBLxvNFEJ4QeSKKiIqhI68FYpnZb3JI0kMAA0l0p37PLbCcwKTGQXU0cWQdaImlKQulij7miA1mLqyi61MmY1jiqvb2h85-XZXc8IJEVWwmxsgq-zu6WkJPdRFYkxt5wkpb93sk4D6NZouIvIBNVY-uRNNAolvexZMdqqkhyHxgG~VXUAx4VYW5hgphU-9ioH1jdAd5nT7~9kfGacIVU3NGHHkMWM2jMooT2WDZjGoVHXuVmlrg~KxKgKbZGODHIRjbUsqpwB8xWlaK~8E-1oN9clpQ__\u0026Key-Pair-Id=APKAJLOHF5GGSLRBV4ZA"}],"slug":"Phenotypic_antigenic_and_molecular_characterization_of_Pasteurella_piscicida_strains_isolated_from_fish","translated_slug":"","page_count":7,"language":"en","content_type":"Work","owner":{"id":29194678,"first_name":"Jesus","middle_initials":null,"last_name":"Romalde","page_name":"JesusRomalde","domain_name":"usc-es","created_at":"2015-04-07T10:49:28.579-07:00","display_name":"Jesus Romalde","url":"https://usc-es.academia.edu/JesusRomalde"},"attachments":[{"id":110242896,"title":"","file_type":"pdf","scribd_thumbnail_url":"https://attachments.academia-assets.com/110242896/thumbnails/1.jpg","file_name":"3316.full.pdf","download_url":"https://www.academia.edu/attachments/110242896/download_file?st=MTczMjQxOTI1Niw4LjIyMi4yMDguMTQ2&","bulk_download_file_name":"Phenotypic_antigenic_and_molecular_chara.pdf","bulk_download_url":"https://d1wqtxts1xzle7.cloudfront.net/110242896/3316.full-libre.pdf?1704818780=\u0026response-content-disposition=attachment%3B+filename%3DPhenotypic_antigenic_and_molecular_chara.pdf\u0026Expires=1731455219\u0026Signature=M46NoPbQd0~hdqgL7W9gkaoqiV6T9t~CBIfbUd8iLkpY2lMXmoVBq23xSZYUBLxvNFEJ4QeSKKiIqhI68FYpnZb3JI0kMAA0l0p37PLbCcwKTGQXU0cWQdaImlKQulij7miA1mLqyi61MmY1jiqvb2h85-XZXc8IJEVWwmxsgq-zu6WkJPdRFYkxt5wkpb93sk4D6NZouIvIBNVY-uRNNAolvexZMdqqkhyHxgG~VXUAx4VYW5hgphU-9ioH1jdAd5nT7~9kfGacIVU3NGHHkMWM2jMooT2WDZjGoVHXuVmlrg~KxKgKbZGODHIRjbUsqpwB8xWlaK~8E-1oN9clpQ__\u0026Key-Pair-Id=APKAJLOHF5GGSLRBV4ZA"}],"research_interests":[{"id":159,"name":"Microbiology","url":"https://www.academia.edu/Documents/in/Microbiology"},{"id":7710,"name":"Biology","url":"https://www.academia.edu/Documents/in/Biology"},{"id":17158,"name":"Japan","url":"https://www.academia.edu/Documents/in/Japan"},{"id":26327,"name":"Medicine","url":"https://www.academia.edu/Documents/in/Medicine"},{"id":28235,"name":"Multidisciplinary","url":"https://www.academia.edu/Documents/in/Multidisciplinary"},{"id":75826,"name":"Europe","url":"https://www.academia.edu/Documents/in/Europe"},{"id":96502,"name":"Applied","url":"https://www.academia.edu/Documents/in/Applied"},{"id":98134,"name":"United States","url":"https://www.academia.edu/Documents/in/United_States"},{"id":99234,"name":"Animals","url":"https://www.academia.edu/Documents/in/Animals"},{"id":107664,"name":"Applied Environmental Microbiology","url":"https://www.academia.edu/Documents/in/Applied_Environmental_Microbiology"},{"id":115151,"name":"Microbial genetic and drug resistance","url":"https://www.academia.edu/Documents/in/Microbial_genetic_and_drug_resistance"},{"id":117270,"name":"Fishes","url":"https://www.academia.edu/Documents/in/Fishes"},{"id":134041,"name":"DNA fingerprinting","url":"https://www.academia.edu/Documents/in/DNA_fingerprinting"},{"id":190363,"name":"Plasmids","url":"https://www.academia.edu/Documents/in/Plasmids"},{"id":213897,"name":"Phenotype","url":"https://www.academia.edu/Documents/in/Phenotype"},{"id":1114508,"name":"Plasmid","url":"https://www.academia.edu/Documents/in/Plasmid"},{"id":1426713,"name":"Antigen","url":"https://www.academia.edu/Documents/in/Antigen"},{"id":3052694,"name":"Pasteurella","url":"https://www.academia.edu/Documents/in/Pasteurella"}],"urls":[{"id":38388384,"url":"https://journals.asm.org/doi/pdf/10.1128/aem.58.10.3316-3322.1992"}]}, dispatcherData: dispatcherData }); $(this).data('initialized', true); } }); $a.trackClickSource(".js-work-strip-work-link", "profile_work_strip") }); </script> <div class="js-work-strip profile--work_container" data-work-id="113228128"><div class="profile--work_thumbnail hidden-xs"><a class="js-work-strip-work-link" data-click-track="profile-work-strip-thumbnail" href="https://www.academia.edu/113228128/_EUROmicroMOOC_using_Twitter_to_share_trends_in_Microbiology_worldwide"><img alt="Research paper thumbnail of #EUROmicroMOOC: using Twitter to share trends in Microbiology worldwide" class="work-thumbnail" src="https://attachments.academia-assets.com/110242838/thumbnails/1.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" href="https://www.academia.edu/113228128/_EUROmicroMOOC_using_Twitter_to_share_trends_in_Microbiology_worldwide">#EUROmicroMOOC: using Twitter to share trends in Microbiology worldwide</a></div><div class="wp-workCard_item"><span>FEMS Microbiology Letters</span><span>, 2019</span></div><div class="wp-workCard_item"><span class="js-work-more-abstract-truncated">Twitter is one of the most popular social media networks that, in recent years, has been increasi...</span><a class="js-work-more-abstract" data-broccoli-component="work_strip.more_abstract" data-click-track="profile-work-strip-more-abstract" href="javascript:;"><span> more </span><span><i class="fa fa-caret-down"></i></span></a><span class="js-work-more-abstract-untruncated hidden">Twitter is one of the most popular social media networks that, in recent years, has been increasingly used by researchers as a platform to share science and discuss ongoing work. Despite its popularity, Twitter is not commonly used as a medium to teach science. Here, we summarize the results of #EUROmicroMOOC: the first worldwide Microbiology Massive Open Online Course taught in English using Twitter. Content analytics indicated that more than 3 million users saw posts with the hashtag #EUROmicroMOOC, which resulted in over 42 million Twitter impressions worldwide. These analyses demonstrate that free Microbiology MOOCs shared on Twitter are valuable educational tools that reach broad audiences throughout the world. We also describe our experience teaching an entire Microbiology course using Twitter and provide recommendations when using social media to communicate science to a broad audience.</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><a id="01ee217c1df5038075bafbe2296ab183" class="wp-workCard--action" rel="nofollow" data-click-track="profile-work-strip-download" data-download="{"attachment_id":110242838,"asset_id":113228128,"asset_type":"Work","button_location":"profile"}" href="https://www.academia.edu/attachments/110242838/download_file?st=MTczMjQxOTI1Niw4LjIyMi4yMDguMTQ2&s=profile"><span><i class="fa fa-arrow-down"></i></span><span>Download</span></a><span class="wp-workCard--action visible-if-viewed-by-owner inline-block" style="display: none;"><span class="js-profile-work-strip-edit-button-wrapper profile-work-strip-edit-button-wrapper" data-work-id="113228128"><a class="js-profile-work-strip-edit-button" tabindex="0"><span><i class="fa fa-pencil"></i></span><span>Edit</span></a></span></span><span id="work-strip-rankings-button-container"></span></div><div class="wp-workCard_item wp-workCard--stats"><span><span><span class="js-view-count view-count u-mr2x" data-work-id="113228128"><i class="fa fa-spinner fa-spin"></i></span><script>$(function () { var workId = 113228128; window.Academia.workViewCountsFetcher.queue(workId, function (count) { var description = window.$h.commaizeInt(count) + " " + window.$h.pluralize(count, 'View'); $(".js-view-count[data-work-id=113228128]").text(description); $(".js-view-count[data-work-id=113228128]").attr('title', description).tooltip(); }); });</script></span></span><span><span class="percentile-widget hidden"><span class="u-mr2x work-percentile"></span></span><script>$(function () { var workId = 113228128; window.Academia.workPercentilesFetcher.queue(workId, function (percentileText) { var container = $(".js-work-strip[data-work-id='113228128']"); container.find('.work-percentile').text(percentileText.charAt(0).toUpperCase() + percentileText.slice(1)); container.find('.percentile-widget').show(); container.find('.percentile-widget').removeClass('hidden'); }); });</script></span><span><script>$(function() { new Works.PaperRankView({ workId: 113228128, container: "", }); });</script></span></div><div id="work-strip-premium-row-container"></div></div></div><script> require.config({ waitSeconds: 90 })(["https://a.academia-assets.com/assets/wow_profile-f77ea15d77ce96025a6048a514272ad8becbad23c641fc2b3bd6e24ca6ff1932.js","https://a.academia-assets.com/assets/work_edit-ad038b8c047c1a8d4fa01b402d530ff93c45fee2137a149a4a5398bc8ad67560.js"], function() { // from javascript_helper.rb var dispatcherData = {} if (true){ window.WowProfile.dispatcher = window.WowProfile.dispatcher || _.clone(Backbone.Events); dispatcherData = { dispatcher: window.WowProfile.dispatcher, downloadLinkId: "01ee217c1df5038075bafbe2296ab183" } } $('.js-work-strip[data-work-id=113228128]').each(function() { if (!$(this).data('initialized')) { new WowProfile.WorkStripView({ el: this, workJSON: {"id":113228128,"title":"#EUROmicroMOOC: using Twitter to share trends in Microbiology worldwide","translated_title":"","metadata":{"abstract":"Twitter is one of the most popular social media networks that, in recent years, has been increasingly used by researchers as a platform to share science and discuss ongoing work. Despite its popularity, Twitter is not commonly used as a medium to teach science. Here, we summarize the results of #EUROmicroMOOC: the first worldwide Microbiology Massive Open Online Course taught in English using Twitter. Content analytics indicated that more than 3 million users saw posts with the hashtag #EUROmicroMOOC, which resulted in over 42 million Twitter impressions worldwide. These analyses demonstrate that free Microbiology MOOCs shared on Twitter are valuable educational tools that reach broad audiences throughout the world. We also describe our experience teaching an entire Microbiology course using Twitter and provide recommendations when using social media to communicate science to a broad audience.","publisher":"Oxford University Press (OUP)","publication_date":{"day":null,"month":null,"year":2019,"errors":{}},"publication_name":"FEMS Microbiology Letters"},"translated_abstract":"Twitter is one of the most popular social media networks that, in recent years, has been increasingly used by researchers as a platform to share science and discuss ongoing work. Despite its popularity, Twitter is not commonly used as a medium to teach science. Here, we summarize the results of #EUROmicroMOOC: the first worldwide Microbiology Massive Open Online Course taught in English using Twitter. Content analytics indicated that more than 3 million users saw posts with the hashtag #EUROmicroMOOC, which resulted in over 42 million Twitter impressions worldwide. These analyses demonstrate that free Microbiology MOOCs shared on Twitter are valuable educational tools that reach broad audiences throughout the world. We also describe our experience teaching an entire Microbiology course using Twitter and provide recommendations when using social media to communicate science to a broad 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wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" href="https://www.academia.edu/113228127/Sapovirus_in_Wastewater_Treatment_Plants_in_Tunisia_Prevalence_Removal_and_Genetic_Characterization">Sapovirus in Wastewater Treatment Plants in Tunisia: Prevalence, Removal, and Genetic Characterization</a></div><div class="wp-workCard_item"><span>Applied and environmental microbiology</span><span>, Jan 15, 2018</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><a id="8244f2182875b3634860d452598a0bc7" class="wp-workCard--action" rel="nofollow" data-click-track="profile-work-strip-download" data-download="{"attachment_id":110242888,"asset_id":113228127,"asset_type":"Work","button_location":"profile"}" 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SaV is shed at high concentrations with feces into wastewater, which is usually discharged into aquatic environments or reused for irrigation without efficient treatments. This study analyzed the incidence of human SaV in four wastewater treatment plants from Tunisia during a period of 13 months (December 2009 to December 2010). Detection and quantification were carried out using reverse transcription-quantitative PCR (RT-qPCR) methods, obtaining a prevalence of 39.9% (87/ 218). Sixty-one positive samples were detected in untreated water and 26 positive samples in processed water. The Dekhila plant presented the highest contamination levels, with a 63.0% prevalence. A dominance of genotype I.2 was observed on 15 of the 24 positive samples that were genetically characterized. By a Bayesian estimation algorithm, the SaV density in wastewater was estimated using left-censored data sets. The mean value of log SaV concentration in untreated wastewater ranged between 2.7 and 4.5 logs. A virus removal efficiency of 0.2 log was calculated for the Dekhila plant as the log ratio posterior distributions between untreated and treated wastewater. Multiple quantitative values obtained in this study must be available in quantitative microbial risk assessment in Tunisia as parameter values reflecting local conditions.","publication_date":{"day":15,"month":1,"year":2018,"errors":{}},"publication_name":"Applied and environmental microbiology","grobid_abstract_attachment_id":110242888},"translated_abstract":null,"internal_url":"https://www.academia.edu/113228127/Sapovirus_in_Wastewater_Treatment_Plants_in_Tunisia_Prevalence_Removal_and_Genetic_Characterization","translated_internal_url":"","created_at":"2024-01-09T08:19:22.459-08:00","preview_url":null,"current_user_can_edit":null,"current_user_is_owner":null,"owner_id":29194678,"coauthors_can_edit":true,"document_type":"paper","co_author_tags":[],"downloadable_attachments":[{"id":110242888,"title":"","file_type":"pdf","scribd_thumbnail_url":"https://attachments.academia-assets.com/110242888/thumbnails/1.jpg","file_name":"e02093-17.full.pdf","download_url":"https://www.academia.edu/attachments/110242888/download_file?st=MTczMjQxOTI1Niw4LjIyMi4yMDguMTQ2&","bulk_download_file_name":"Sapovirus_in_Wastewater_Treatment_Plants.pdf","bulk_download_url":"https://d1wqtxts1xzle7.cloudfront.net/110242888/e02093-17.full-libre.pdf?1704818772=\u0026response-content-disposition=attachment%3B+filename%3DSapovirus_in_Wastewater_Treatment_Plants.pdf\u0026Expires=1732351226\u0026Signature=gcnO0I0hHVKhqW-cvlznjliv2DuS~TNDJ3rw5htGgUORtI6CGK9R13aNd86VnAoi9nUKfAIncCs1r90H71j1FQsk8W3iZ5~HX-68XCw8Eg68QKF6PDSrgacitomJ83LqrcBmafYYwCCaVUzhXGAZbj3XwuzmYGbU1RmI1yVDuvPAljW-fLyhOgsNi9jNHW9oNsK1FntrFm1oou1Uxt7J~juXzRqRfpBxnQpXt~JMNs6-hqxTAWBtbI8vmtfHzbphZpAngajrErWXuNR7qQAgY1VkA7ttoizLQSIslJEm08eUfTAAf0C3itSDca9KJdH6Whv5f3PQl1PWHOlkLP1KCA__\u0026Key-Pair-Id=APKAJLOHF5GGSLRBV4ZA"}],"slug":"Sapovirus_in_Wastewater_Treatment_Plants_in_Tunisia_Prevalence_Removal_and_Genetic_Characterization","translated_slug":"","page_count":11,"language":"en","content_type":"Work","owner":{"id":29194678,"first_name":"Jesus","middle_initials":null,"last_name":"Romalde","page_name":"JesusRomalde","domain_name":"usc-es","created_at":"2015-04-07T10:49:28.579-07:00","display_name":"Jesus Romalde","url":"https://usc-es.academia.edu/JesusRomalde"},"attachments":[{"id":110242888,"title":"","file_type":"pdf","scribd_thumbnail_url":"https://attachments.academia-assets.com/110242888/thumbnails/1.jpg","file_name":"e02093-17.full.pdf","download_url":"https://www.academia.edu/attachments/110242888/download_file?st=MTczMjQxOTI1Niw4LjIyMi4yMDguMTQ2&","bulk_download_file_name":"Sapovirus_in_Wastewater_Treatment_Plants.pdf","bulk_download_url":"https://d1wqtxts1xzle7.cloudfront.net/110242888/e02093-17.full-libre.pdf?1704818772=\u0026response-content-disposition=attachment%3B+filename%3DSapovirus_in_Wastewater_Treatment_Plants.pdf\u0026Expires=1732351226\u0026Signature=gcnO0I0hHVKhqW-cvlznjliv2DuS~TNDJ3rw5htGgUORtI6CGK9R13aNd86VnAoi9nUKfAIncCs1r90H71j1FQsk8W3iZ5~HX-68XCw8Eg68QKF6PDSrgacitomJ83LqrcBmafYYwCCaVUzhXGAZbj3XwuzmYGbU1RmI1yVDuvPAljW-fLyhOgsNi9jNHW9oNsK1FntrFm1oou1Uxt7J~juXzRqRfpBxnQpXt~JMNs6-hqxTAWBtbI8vmtfHzbphZpAngajrErWXuNR7qQAgY1VkA7ttoizLQSIslJEm08eUfTAAf0C3itSDca9KJdH6Whv5f3PQl1PWHOlkLP1KCA__\u0026Key-Pair-Id=APKAJLOHF5GGSLRBV4ZA"}],"research_interests":[{"id":657,"name":"Veterinary Medicine","url":"https://www.academia.edu/Documents/in/Veterinary_Medicine"},{"id":7710,"name":"Biology","url":"https://www.academia.edu/Documents/in/Biology"},{"id":26327,"name":"Medicine","url":"https://www.academia.edu/Documents/in/Medicine"},{"id":28235,"name":"Multidisciplinary","url":"https://www.academia.edu/Documents/in/Multidisciplinary"},{"id":65757,"name":"Wastewater","url":"https://www.academia.edu/Documents/in/Wastewater"},{"id":107664,"name":"Applied Environmental Microbiology","url":"https://www.academia.edu/Documents/in/Applied_Environmental_Microbiology"},{"id":372410,"name":"Genotype","url":"https://www.academia.edu/Documents/in/Genotype"},{"id":469102,"name":"Feces","url":"https://www.academia.edu/Documents/in/Feces"},{"id":551896,"name":"Sewage Treatment","url":"https://www.academia.edu/Documents/in/Sewage_Treatment"}],"urls":[]}, dispatcherData: dispatcherData }); $(this).data('initialized', true); } }); $a.trackClickSource(".js-work-strip-work-link", "profile_work_strip") }); </script> <div class="js-work-strip profile--work_container" data-work-id="113228126"><div class="profile--work_thumbnail hidden-xs"><a class="js-work-strip-work-link" data-click-track="profile-work-strip-thumbnail" href="https://www.academia.edu/113228126/Complete_Genome_Sequence_of_Arcobacter_sp_Strain_LFT_1_7_Isolated_from_Great_Scallop_Pecten_maximus_Larvae"><img alt="Research paper thumbnail of Complete Genome Sequence of Arcobacter sp. Strain LFT 1.7 Isolated from Great Scallop ( Pecten maximus ) Larvae" class="work-thumbnail" src="https://attachments.academia-assets.com/110242884/thumbnails/1.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" href="https://www.academia.edu/113228126/Complete_Genome_Sequence_of_Arcobacter_sp_Strain_LFT_1_7_Isolated_from_Great_Scallop_Pecten_maximus_Larvae">Complete Genome Sequence of Arcobacter sp. Strain LFT 1.7 Isolated from Great Scallop ( Pecten maximus ) Larvae</a></div><div class="wp-workCard_item"><span>Genome Announcements</span><span>, 2017</span></div><div class="wp-workCard_item"><span class="js-work-more-abstract-truncated">Arcobacter sp. strain LFT 1.7 was isolated from great scallop ( Pecten maximus ) larvae. Analysis...</span><a class="js-work-more-abstract" data-broccoli-component="work_strip.more_abstract" data-click-track="profile-work-strip-more-abstract" href="javascript:;"><span> more </span><span><i class="fa fa-caret-down"></i></span></a><span class="js-work-more-abstract-untruncated hidden">Arcobacter sp. strain LFT 1.7 was isolated from great scallop ( Pecten maximus ) larvae. Analysis of the 16S rRNA gene sequence showed that strain LFT 1.7 formed an independent lineage in the genus Arcobacter . The draft genome of LFT 1.7 was sequenced to determine the taxonomic position and ecological function of this strain.</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><a id="67faafa5dfdfd60acdedfbf96e035186" class="wp-workCard--action" rel="nofollow" data-click-track="profile-work-strip-download" data-download="{"attachment_id":110242884,"asset_id":113228126,"asset_type":"Work","button_location":"profile"}" href="https://www.academia.edu/attachments/110242884/download_file?st=MTczMjQxOTI1Niw4LjIyMi4yMDguMTQ2&s=profile"><span><i class="fa fa-arrow-down"></i></span><span>Download</span></a><span class="wp-workCard--action visible-if-viewed-by-owner inline-block" style="display: none;"><span class="js-profile-work-strip-edit-button-wrapper profile-work-strip-edit-button-wrapper" data-work-id="113228126"><a class="js-profile-work-strip-edit-button" tabindex="0"><span><i class="fa fa-pencil"></i></span><span>Edit</span></a></span></span><span id="work-strip-rankings-button-container"></span></div><div class="wp-workCard_item wp-workCard--stats"><span><span><span class="js-view-count view-count u-mr2x" data-work-id="113228126"><i class="fa fa-spinner fa-spin"></i></span><script>$(function () { var workId = 113228126; window.Academia.workViewCountsFetcher.queue(workId, function (count) { var description = window.$h.commaizeInt(count) + " " + window.$h.pluralize(count, 'View'); $(".js-view-count[data-work-id=113228126]").text(description); $(".js-view-count[data-work-id=113228126]").attr('title', description).tooltip(); }); });</script></span></span><span><span class="percentile-widget hidden"><span class="u-mr2x work-percentile"></span></span><script>$(function () { var workId = 113228126; window.Academia.workPercentilesFetcher.queue(workId, function (percentileText) { var container = $(".js-work-strip[data-work-id='113228126']"); container.find('.work-percentile').text(percentileText.charAt(0).toUpperCase() + percentileText.slice(1)); container.find('.percentile-widget').show(); container.find('.percentile-widget').removeClass('hidden'); }); });</script></span><span><script>$(function() { new Works.PaperRankView({ workId: 113228126, container: "", }); });</script></span></div><div id="work-strip-premium-row-container"></div></div></div><script> require.config({ waitSeconds: 90 })(["https://a.academia-assets.com/assets/wow_profile-f77ea15d77ce96025a6048a514272ad8becbad23c641fc2b3bd6e24ca6ff1932.js","https://a.academia-assets.com/assets/work_edit-ad038b8c047c1a8d4fa01b402d530ff93c45fee2137a149a4a5398bc8ad67560.js"], function() { // from javascript_helper.rb var dispatcherData = {} if (true){ window.WowProfile.dispatcher = window.WowProfile.dispatcher || _.clone(Backbone.Events); dispatcherData = { dispatcher: window.WowProfile.dispatcher, downloadLinkId: "67faafa5dfdfd60acdedfbf96e035186" } } $('.js-work-strip[data-work-id=113228126]').each(function() { if (!$(this).data('initialized')) { new WowProfile.WorkStripView({ el: this, workJSON: {"id":113228126,"title":"Complete Genome Sequence of Arcobacter sp. 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