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<span class="md-ellipsis"> Models </span> <span class="md-nav__icon md-icon"></span> </label> <nav class="md-nav" data-md-level="1" aria-labelledby="__nav_1_label" aria-expanded="false"> <label class="md-nav__title" for="__nav_1"> <span class="md-nav__icon md-icon"></span> Models </label> <ul class="md-nav__list" data-md-scrollfix> <li class="md-nav__item md-nav__item--nested"> <input class="md-nav__toggle md-toggle " type="checkbox" id="__nav_1_1" > <label class="md-nav__link" for="__nav_1_1" id="__nav_1_1_label" tabindex="0"> <span class="md-ellipsis"> Geneformer </span> <span class="md-nav__icon md-icon"></span> </label> <nav class="md-nav" data-md-level="2" aria-labelledby="__nav_1_1_label" aria-expanded="false"> <label class="md-nav__title" for="__nav_1_1"> <span class="md-nav__icon md-icon"></span> Geneformer </label> <ul class="md-nav__list" data-md-scrollfix> <li class="md-nav__item"> <a href="/model_cards/geneformer/" class="md-nav__link"> <span class="md-ellipsis"> Model Card </span> </a> </li> <li class="md-nav__item"> <a href="/configs/geneformer_config/" class="md-nav__link"> <span class="md-ellipsis"> Config </span> </a> </li> <li class="md-nav__item"> <a href="/models/geneformer/" class="md-nav__link"> <span class="md-ellipsis"> Model </span> </a> </li> <li class="md-nav__item"> <a href="/fine_tuning_models/geneformer_fine_tune/" class="md-nav__link"> <span class="md-ellipsis"> Fine-Tuning Model </span> </a> </li> </ul> </nav> </li> <li class="md-nav__item md-nav__item--nested"> <input class="md-nav__toggle md-toggle " type="checkbox" id="__nav_1_2" > <label class="md-nav__link" for="__nav_1_2" id="__nav_1_2_label" tabindex="0"> <span class="md-ellipsis"> scGPT </span> <span class="md-nav__icon md-icon"></span> </label> <nav class="md-nav" data-md-level="2" aria-labelledby="__nav_1_2_label" aria-expanded="false"> <label class="md-nav__title" for="__nav_1_2"> <span class="md-nav__icon md-icon"></span> scGPT </label> <ul class="md-nav__list" 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class="md-nav__title" for="__nav_1_3"> <span class="md-nav__icon md-icon"></span> HyenaDNA </label> <ul class="md-nav__list" data-md-scrollfix> <li class="md-nav__item"> <a href="/model_cards/hyenadna/" class="md-nav__link"> <span class="md-ellipsis"> Model Card </span> </a> </li> <li class="md-nav__item"> <a href="/configs/hyenadna_config/" class="md-nav__link"> <span class="md-ellipsis"> Config </span> </a> </li> <li class="md-nav__item"> <a href="/models/hyenadna/" class="md-nav__link"> <span class="md-ellipsis"> Model </span> </a> </li> <li class="md-nav__item"> <a href="/fine_tuning_models/hyenadna_fine_tune/" class="md-nav__link"> <span class="md-ellipsis"> Fine-Tuning Model </span> </a> </li> </ul> </nav> </li> <li class="md-nav__item md-nav__item--nested"> <input class="md-nav__toggle md-toggle " type="checkbox" id="__nav_1_4" > <label class="md-nav__link" for="__nav_1_4" id="__nav_1_4_label" tabindex="0"> <span class="md-ellipsis"> UCE </span> <span class="md-nav__icon md-icon"></span> </label> <nav class="md-nav" data-md-level="2" aria-labelledby="__nav_1_4_label" aria-expanded="false"> <label class="md-nav__title" for="__nav_1_4"> <span class="md-nav__icon md-icon"></span> UCE </label> <ul class="md-nav__list" data-md-scrollfix> <li class="md-nav__item"> <a href="/model_cards/uce/" class="md-nav__link"> <span class="md-ellipsis"> Model Card </span> </a> </li> <li class="md-nav__item"> <a href="/configs/uce_config/" class="md-nav__link"> <span class="md-ellipsis"> Config </span> </a> </li> <li class="md-nav__item"> <a href="/models/uce/" class="md-nav__link"> <span class="md-ellipsis"> Model </span> </a> </li> <li class="md-nav__item"> <a href="/fine_tuning_models/uce_fine_tune/" class="md-nav__link"> <span class="md-ellipsis"> Fine-Tuning Model </span> </a> </li> </ul> </nav> </li> <li class="md-nav__item"> <a href="/models/base_models/" class="md-nav__link"> <span class="md-ellipsis"> Helical Base Models </span> </a> </li> <li class="md-nav__item"> <a href="/models/fine_tuning_heads/" class="md-nav__link"> <span class="md-ellipsis"> Fine-Tuning Heads </span> </a> </li> </ul> </nav> </li> <li class="md-nav__item md-nav__item--nested"> <input class="md-nav__toggle md-toggle " type="checkbox" id="__nav_2" > <label class="md-nav__link" for="__nav_2" id="__nav_2_label" tabindex="0"> <span class="md-ellipsis"> Example Notebooks </span> <span class="md-nav__icon md-icon"></span> </label> <nav class="md-nav" data-md-level="1" aria-labelledby="__nav_2_label" aria-expanded="false"> <label class="md-nav__title" for="__nav_2"> <span class="md-nav__icon md-icon"></span> Example Notebooks </label> <ul class="md-nav__list" data-md-scrollfix> <li class="md-nav__item"> <a href="/notebooks/Quick-Start-Tutorial/" class="md-nav__link"> <span class="md-ellipsis"> Helical Quick Start Tutorial </span> </a> </li> <li class="md-nav__item"> <a href="/notebooks/Cell-Type-Annotation/" class="md-nav__link"> <span class="md-ellipsis"> Cell type annotation prediction </span> </a> </li> <li class="md-nav__item"> <a href="/notebooks/Cell-Type-Classification-Fine-Tuning/" class="md-nav__link"> <span class="md-ellipsis"> Classification fine-tuning using Helical </span> </a> </li> <li class="md-nav__item"> <a href="/notebooks/Geneformer-vs-UCE/" class="md-nav__link"> <span class="md-ellipsis"> Comparing Geneformer &amp; UCE for cell-type classification </span> </a> </li> <li class="md-nav__item"> <a href="/notebooks/Hyena-DNA-Inference/" class="md-nav__link"> <span class="md-ellipsis"> Downstream prediction </span> </a> </li> <li class="md-nav__item"> <a href="/notebooks/HyenaDNA-Fine-Tuning/" class="md-nav__link"> <span class="md-ellipsis"> Fine-Tune HyenaDNA On A Downstream Classification Task </span> </a> </li> </ul> </nav> </li> <li class="md-nav__item"> <a href="/benchmarking/description/" class="md-nav__link"> <span class="md-ellipsis"> Benchmarking </span> </a> </li> </ul> </nav> </div> </div> </div> <div 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