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mmcif_pdbx.dic</h2> </div> <div class="row"> <div class="col-md-1 my-nav-title"><div class="pull-right"> <h4>Browse:</h4></div></div> <div class="col-md-11"> <ul class="nav nav-tabs"> <li class="active"> <a href="/dictionaries/mmcif_pdbx_v5_next.dic/Index/index.html">Dictionary</a></li> <li > <a href="/dictionaries/mmcif_pdbx_v5_next.dic/Groups/index.html">Category Groups</a></li> <li > <a href="/dictionaries/mmcif_pdbx_v5_next.dic/Categories/index.html">Data Categories</a></li> <li > <a href="/dictionaries/mmcif_pdbx_v5_next.dic/Items/index.html">Data Items</a></li> <li > <a href="/dictionaries/mmcif_pdbx_v5_next.dic/Data/index.html">Supporting Data</a></li> </ul> </div> </div> <div class="row"> <div class="panel panel-default general"> <div class="panel-heading"> <h3 class="panel-title">General <a href="#" class="mytip pull-right" data-toggle="tooltip" data-placement="left" title="General information"> <img class="" src="/assets/images/glyphicons-dot-com/png/glyphicons_195_circle_info.png"></a></h3> </div> <div class="panel-body"> <dl class="dl-horizontal dl-lg"> <dt >Dictionary title</dt> <dd >PDB Exchange Dictionary (PDBx/mmCIF) Development Version</dd> <dt >Dictionary description</dt> <dd >The development version of the PDB Exchange Dictionary</dd> <dt >Original developers</dt> <dd >wwPDB</dd> <dt >Dictionary maintainers</dt> <dd >wwPDB</dd> <dt >Dictionary name</dt> <dd >mmcif_pdbx.dic</dd> <dt >Dictionary version</dt> <dd >5.407</dd> <dt >Last update</dt> <dd >2024-11-06</dd> </dl> </div> </div> </div> <div class="row"> <div class="panel panel-default default"> <div class="panel-heading"> <h3 class="panel-title">Downloads <a href="#" class="mytip pull-right" data-toggle="tooltip" data-placement="left" title="Download options"> <img class="" src="/assets/images/glyphicons-dot-com/png/glyphicons_181_download_alt.png"></a></h3> </div> <div class="panel-body"> <div class="col-md-10 col-md-offset-1"> <a class="btn btn-lg btn-wwpdb-green" href="/dictionaries/ascii/mmcif_pdbx_v5_next.dic">Dictionary Text</a> <a class="btn btn-lg btn-wwpdb-green" href="/dictionaries/ascii/mmcif_pdbx_v5_next.dic.gz">Dictionary Text (gz)</a> </div> </div> </div> </div> <div class="row"> <div class="panel-group my-spacer" id="pg1"> <div class="panel panel-default">  <div class="panel-heading"> <div class="row"> <div class="col-md-8"> <h4 class="panel-title"> Dictionary Revision History </h4> </div> <div class="col-md-4"> <a class="accordion-toggle pull-right" data-toggle="collapse" data-parent="#pg1" href="#p1"> View/Hide revision history list </a> </div> </div>  </div>  <div id="p1" class="panel-collapse collapse in"> <div class="panel-body">  <div class="my-table-scrollable"> <table class="table table-striped table-condensed "> <thead> <tr> <th>Version</th> <th>Revision Date</th> <th>Revision Description</th> </tr> </thead> <tbody> <tr> <td class="my-monospace">5.407</td> <td class="my-monospace">2024-11-06</td> <td class="my-monospace"> Changes (ep): Changes (ep): + Add enumeration for _diffrn.pdbx_serial_crystal_experiment + Add ssbond to enumeration for _pdbx_data_processing_status.task_name + Add DSA to enumberation for _pdbx_nmr_chem_shift_ref.mol_common_name + Add "SILICON DIOXIDE" to em_support_film.material enumeration</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.406</td> <td class="my-monospace">2024-10-22</td> <td class="my-monospace"> Changes (ep): + Add _pdbx_depui_status_flags.assembly_inferred + Add "Quantifoil R1/4" to _em_sample_support.grid_type enumeration + Add "SILICON DIOXIDE" to _em_sample_support.film_material enumeration + Update enumberations for _pdbx_nmr_constraint_file.constraint_type and _pdbx_nmr_constraint_file.constraint_subtype</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.405</td> <td class="my-monospace">2024-09-23</td> <td class="my-monospace"> Changes (ep/mgb): + PTM extension enumeration list update + Update description of OBS enumeration value in _pdbx_database_status.status_code, _pdbx_database_status.author_release_status_code, _pdbx_database_status.status_code_sf, _pdbx_database_status.status_code_mr, _pdbx_database_status.status_code_cs, _pdbx_database_status.status_code_nmr_data, _pdbx_database_status.post_rel_status + Change key for _pdbx_domain_range to newly created _pdbx_domain_range.id</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.404</td> <td class="my-monospace">2024-08-26</td> <td class="my-monospace"> Changes (ep/mgb): + Add "BURKER D8 VENTURE" and "BRUKER IMUS DIAMOND II" to _diffrn_source.type enumeration + Add 'Quantifoil Active R2/1', 'Quantifoil Active R1.6/0.9', 'Quantifoil Active R1.2/0.8', 'SPT Labtech self-wicking R1.2/0.8' to em_sample_support.grid_type enumeration + Add "SPT LABTECH CHAMELEON" to _em_vitrification.equipment + For _em_imaging.microscope_model create a pdbx_item_enumeration list removing "FEI TITAN" and "FEI TITAN KRIOS" + Add SDF and TIF to _pdbx_chem_comp_upload_depositor_info.upload_file_type enumeration + PTM extension enumeration list update</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.403</td> <td class="my-monospace">2024-06-14</td> <td class="my-monospace"> Changes (ep): + Change context of em_admin to include some attributes in PDB public files</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.402</td> <td class="my-monospace">2024-06-05</td> <td class="my-monospace"> Changes (ep): + Add "home-built" to pdbx_nmr_spectrometer.model for deposition enumeration. + Extend enumerations for pdbx_chem_comp_pcm and pdbx_modification_feature</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.401</td> <td class="my-monospace">2024-05-20</td> <td class="my-monospace"> Changes (ep/mgb): + Remove "D-amino acid" from enumeration from pdbx_modification_feature.type, pdbx_chem_comp_pcm.type. + Removed direct linking modifications from enumeration list for _pdbx_chem_comp_pcm.category + Add "Modify PCM" to pdbx_chem_comp_audit.action_type enumeration. + Add parent/child relationships for _pdbx_nmr_spectral_peak_software.software_id and _pdbx_nmr_chem_shift_software.software_id to _pdbx_nmr_software.ordinal</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.400</td> <td class="my-monospace">2024-04-29</td> <td class="my-monospace"> Changes (ep/mgb): + Remove biological function information from pdbx_modification_feature + Extend em_author_list to support Center for Structural Biology of Infectious Diseases (CSBID) + Change type of _pdbx_chem_comp_upload_depositor_info.upload_file_type to uline to reflect usage. Add JPG and PDBX to enumeration.</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.399</td> <td class="my-monospace">2024-04-15</td> <td class="my-monospace"> Changes (ep): + Extend enumeration of _pdbx_chem_comp_depositor_info.type based on use + Extend _diffrn_source.type enumeration with "PETRA III, DESY BEAMLINE P09 HiPhaX"</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.398</td> <td class="my-monospace">2024-04-01</td> <td class="my-monospace"> Changes (ep): Changes (ep/mgb): + Add "DECTRIS ARINA (0.2k x 0.2k)" to _em_image_recording.film_or_detector_model enumeration + Add RAPD to _software.name enumeration + PTM extension add None to enumerations, and support alt ids. + Update funding enumerations</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.397</td> <td class="my-monospace">2024-03-20</td> <td class="my-monospace"> Changes (ep): + Add Robetta, PHYRE and InsightII to _pdbx_initial_refinement_model.source_name enumeration + Update funding enumerations</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.396</td> <td class="my-monospace">2024-03-04</td> <td class="my-monospace"> Changes (ep/mgb): + Update ptm-extension + Example for _entity_poly.pdbx_seq_one_letter_code updted changing PTO -> TPO + Enumeration for _software.name "MAIN" has roles added. + Add CSearch to _software.name enumeration + Add ASTRA-TOOLBOX to _em_software enumeration + Add 4D-STEM to _em_iaging.mode enumeration + Add PDB-Dev to _database_2.database_id + Update funding enumerations</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.395</td> <td class="my-monospace">2024-02-04</td> <td class="my-monospace"> Changes (ep): + Add "int_list" data type for a comma separated list of positive integers. Use for pdbx_item_type for -pdbx_initial_refinement_model.entity_id_list. Update description for pdbx_initial_refinement_model.entity_id_list. + Add "STFC Large Pixel Detector" to _diffrn_detector.type enumeration.</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.394</td> <td class="my-monospace">2024-01-29</td> <td class="my-monospace"> Changes (ep): + Add enumeration for _pdbx_database_related.db_name + Add "NMRtist" to pdbx_nmr_software.name enumeration</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.393</td> <td class="my-monospace">2024-01-22</td> <td class="my-monospace"> Changes (ep): + Add pdbx_enumeration_enumeration for pdbx_initial_refinement_model.type removing "other" + Add new "DECTRIS PILATUS4 (R,X,XE) CdTe" detectors to _diffrn_detector.type enumeration + Add "GATAN ALPINE (2.3k x 3.2k)" to _em_image_recording.film_or_detector_model + Extend _pdbx_audit_support.funding_organization enumeration</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.392</td> <td class="my-monospace">2023-01-16</td> <td class="my-monospace"> Changes (ep): + em_software.name enumeration change "PanthaRhei" to "Pantha Rhei" + Add "GATAN K3 BIOCONTINUUM (6k x 4k)" to _em_image_recording.film_or_detector_model + Add "RIGAKU HyPix-Arc 100" to _diffrn_detector.type enumeration + Add pdbx_item_description to _entity.details + Extend _pdbx_audit_support.funding_organization enumeration + Add IPCAS to _software.name enumeration</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.391</td> <td class="my-monospace">2023-12-03</td> <td class="my-monospace"> Changes (ep): + Extend _pdbx_audit_support.funding_organization enumeration + Add ARTINA to pdbx_nmr_software.name enumeration + Add "DECTRIS ELA (1k x 0.5k)" to em_image_recording.film_or_detector_model enumeration + Add PanthaRhei and PACEtomo to em_software.name enumeration + Add 'CEOS CEFID' to _em_imaging_optics.energyfilter_name enumeration</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.390</td> <td class="my-monospace">2023-11-20</td> <td class="my-monospace"> Changes (ep): + Remove NDB, BMCD, and BIOISIS from the pdbx_enumeration_list for pdbx_database_related.db_name + Add 'DECTRIS PILATUS4' detectors to _diffrn_detector.type + Extend _pdbx_audit_support.funding_organization enumeration</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.389</td> <td class="my-monospace">2023-10-23</td> <td class="my-monospace"> Changes (ep): + author data type was corrected from 5.387 version so options properly checked + Extend _pdbx_audit_support.funding_organization enumeration + Add "MAR CCD 300 mm" to _diffrn_detector.type + Add definitions for _pdbx_chem_comp_depositor.upload_file_name, _pdbx_chem_comp_depositor.upload_file_type + Add example for _em_start_model.emdb_id</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.388</td> <td class="my-monospace">2023-10-02</td> <td class="my-monospace"> Changes (ep): + Extend _pdbx_audit_support.funding_organization enumeration + PTM extension updates to enumerations + Add Poky to _pdbx_nmr_softare.name enumeration</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.387</td> <td class="my-monospace">2023-08-28</td> <td class="my-monospace"> Changes (ep): + Add EMDB_PUBLIC context to em_staining and em_final_classification categories + author data type extended to support structural genomics names + Add 'I3' to _em_software.name enumeration + Add "RIGAKU HyPix-Arc 150" to _diffrn_detector.type</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.386</td> <td class="my-monospace">2023-08-22</td> <td class="my-monospace"> Changes (ep): + Add em_admin.process_site and em_admin.composite_map + For many EM categories and EMDB_PUBLIC</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.385</td> <td class="my-monospace">2023-08-15</td> <td class="my-monospace"> Changes (ep): + Extend _pdbx_audit_support.funding_organization enumeration + Add "CRYOSOL VITROJET" to em_vitrification.instrument</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.384</td> <td class="my-monospace">2023-08-02</td> <td class="my-monospace"> Changes (ep): + Correct pdbx_item_linked_group_list definitions for pdbx_entity_branch_link + Add PDB-Dev to pdbx_initial_refinement_model.source_name enumeration + Temporary removal atom_site.label_atom_id -> chem_comp_atom.atom_id parent/child relationship</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.383</td> <td class="my-monospace">2023-07-24</td> <td class="my-monospace"> Changes (ep): + Add _em_3d_fitting_list.initial_refinement_model_id + Add "PSI JUNGFRAU 8M" to _diffrn_detector.type enumeration + Add autoPX to _software.name enumeration + Add "SSRF BEAMLINE BL03HB" and "SSRF BEAMLINE BL17UM" to _diffrn_source.type + Extend _pdbx_audit_support.funding_organization enumeration</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.382</td> <td class="my-monospace">2023-07-17</td> <td class="my-monospace"> Changes (ep): + Add "JEOL 1400/HR + YPS FEG" to _em_imaginh.microscope_model enumeration + Add "DECTRIS SINGLA (1k x 1k)" to _em_image_recording.film_or_detector_model enumeration + Extend _pdbx_audit_support.funding_organization enumeration + Add 'consensus EM volume' and 'focused EM volume' to pdbx_database_related.content_type + Add 'Modify backbone' to _pdbx_chem_comp_audit.action_type enumeration + Add 'Modify backbone' to _pdbx_chem_comp_audit.action_type enumeration + Add Servalcat to _em_softare.name, and _software.name enumerations</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.381</td> <td class="my-monospace">2023-06-18</td> <td class="my-monospace"> Changes (ep): + Add AUCO to enumeration of _pdbx_database_status.status_code_nmr_data + Correct pdb_id_u regular expression + Add PTM remediation categories and data _chem_comp.pdbx_pcm, _chem_comp_atom.pdbx_backbone_atom_flag, _chem_comp_atom.pdbx_n_terminal_atom_flag, _chem_comp_atom.pdbx_c_terminal_atom_flag, category pdbx_chem_comp_pcm, _pdbx_entry_details.has_protein_modification, category pdbx_modification_feature</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.380</td> <td class="my-monospace">2023-06-12</td> <td class="my-monospace"> Changes (ep): + Change type of _em_3d_fitting_list.pdb_entry_id to pdb_id_u + Add "MALVERN PANALYTICAL EMPYREAN TUBE" to _diffrn_source.type enumeration + Add _em_entity_assembly_naturalsource.details + Remove open enumeration from _pdbx_nmr_chem_shift_ref.mol_common_name + Make _pdbx_reference_entity_sequence.one_letter_codes non-mandatory + Extend _pdbx_audit_support.funding_organization enumeration</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.379</td> <td class="my-monospace">2023-06-01</td> <td class="my-monospace"> Changes (ep/cl): + Add _ndb_struct_na_base_pair.hbond_type_leontis_westhof to eventually replace _ndb_struct_na_base_pair.hbond_type_12 + Extend _pdbx_audit_support.funding_organization enumeration + Change "LNLS SIRUS" to "LNLS SIRIUS" in _diffrn_source.pdbx_synchrotron_site and _diffrn_source.type enumerations + Change type of _em_obsolete.id to code + Make _diffrn.pdbx_serial_crystal_experiment mandatory for deposition</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.378</td> <td class="my-monospace">2023-05-03</td> <td class="my-monospace"> Changes (ep): + Correct "TFS FALCON 4i (4k x 4k)" to _em_image_recording.film_or_detector_model + Add 'Au-flat 1.2/1.3' to _em_sample_support.grid_type enumeration + Extend _pdbx_audit_support.funding_organization enumeration + Add IPLT to _em_software.name enumeration + Adjust entity_id_list data type to be alphanumeric entities which is more in line with entity.id type. + Define pdb_id_u data type as case insensitive + Change data type for _em_3d_fitting_list.pdb_entry_id to pdb_id_u</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.377</td> <td class="my-monospace">2023-04-12</td> <td class="my-monospace"> + Add 'HOLD FOR 6 WEEKS' to enumerations for _pdbx_database_status.dep_release_code_struct_fact and _pdbx_database_status.dep_release_code_nmr_constraints + Extend _pdbx_audit_support.funding_organization enumeration + Add _reflns.pdbx_redundancy lower limit of 0. + Add 'Histidine' to _pdbx_nmr_chem_shift_ref.mol_common_name enumeration + Update pdbx_nmr_software.name list</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.376</td> <td class="my-monospace">2023-03-14</td> <td class="my-monospace"> Changes (ep): + Move 'EWALD SPHERE CORRECTION' to _em_software.category enumeration + Add _pdbx_depui_entry_details.validated_identifier_ORCID + Add "Malvern Panalytical PIXcel 1D" to _diffrn_detector.type enumeration + Add "TFS FALCON 4i (4k x 4x)" to _em_image_recording.film_or_detector_model + Extend _pdbx_audit_support.funding_organization enumeration</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.375</td> <td class="my-monospace">2023-03-07</td> <td class="my-monospace"> Changes (ep): + Extend _pdbx_audit_support.funding_organization enumeration + Add 'Ewald Sphere Correction' to _em_software.name enumeration</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.374</td> <td class="my-monospace">2023-01-28</td> <td class="my-monospace"> Changes (ep): + Change _pdbx_sifts_xref_db.res_type enumeration to examples + Add pdbx_sifts_xref_db_segments.seq_id_start and pdbx_sifts_xref_db_segments.seq_id_start as keys for category.</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.373</td> <td class="my-monospace">2023-01-09</td> <td class="my-monospace"> Changes (ep): + Add 'PDB-Dev' to _pdbx_database_related.db_name enumeration</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.372</td> <td class="my-monospace">2022-12-15</td> <td class="my-monospace"> Changes (ep): + Mark _pdbx_initial_refinement_model.type as non-mandatory for deposition system + Attributes for _struct_ncs_oper changed to mandatory + Deposition type for _em_imaging.nominal_defocus_max and _em_imaging.nominal_defocus_min to int + Add "RIGAKU PhotonJet-S" and "BRUKER IMUS DIAMOND MICROFOCUS" to _diffrn_source.type + Add EMIRA to _em_software.name enumeration + Add CSBID to _pdbx_SG_project.full_name_of_center, _pdbx_SG_project.initial_of_center enumerations + Extend _pdbx_audit_support.funding_organization enumeration</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.371</td> <td class="my-monospace">2022-12-01</td> <td class="my-monospace"> Changes (ep/cv/ab): + Integrate unmerged data by bringing in minimal imgCIF dictionary and define new categories _pdbx_diffrn_batch, _pdbx_diffrn_cell, _pdbx_diffrn_orientation _pdbx_diffrn_batch_scan, _pdbx_diffrn_detector_panel_mapping. Add _diffrn_refln.frame_id, _diffrn_refln.pdbx_batch_id, _diffrn_refln.pdbx_detector_obs_fast, _diffrn_refln.pdbx_detector_obs_slow, _diffrn_refln.pdbx_detector_calc_fast, _diffrn_refln.pdbx_detector_calc_slow, _diffrn_refln.pdbx_panel_mapping_id + Define uchar5 data type _chem_comp.three_letter_code</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.370</td> <td class="my-monospace">2022-10-25</td> <td class="my-monospace"> Changes (ep): + Add _em_3d_fitting_list.accession_code, _em_3d_fitting_list.source_name, _em_3d_fitting_list.type + Deprecate _em_3d_fitting.initiali_refinement_model_id + Extend em_software.name list to include CryoDRGN and CryoDRGN2 + Add "DECTRIS EIGER2 X CdTe 9M" and "DECTRIS EIGER2 XE CdTe 9M" to _diffrn_detector.type + Extend _pdbx_audit_support.funding_organization enumeration + Mark _pdbx_nmr_chem_shift_ref.atom_group and _pdbx_nmr_constraint_file.constraint_type as closed enumeration</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.369</td> <td class="my-monospace">2022-08-31</td> <td class="my-monospace"> Changes (ep/rp/cv): + Consolidate EMD/EM namespaces + Update _pdbx_audit_support + Correct _atom_type.scat_Cromer_Mann_* example + Add cctbx.xfel.merge and STARGazer to _software.name enumeration + Add "DECTRIS EIGER2 R 4M" to _diffrn_detector.type + Expand range of _em_image_scans.sampling_size to 100.0</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.368</td> <td class="my-monospace">2022-07-19</td> <td class="my-monospace"> Changes (ep/mw): + Extend _pdbx_audit_support.funding_organization enumeration + Add "DIRECT ELECTRON APOLLO (4k x 4k)" to _em_image_recording.film_or_detector_mode enumeration + Initial model extension added to dictionary (_pdbx_initial_refinement) + pdbx_investigation category added to the model + Add "CHESS BEAMLINE 7B2" to _diffrn_source.type enumeration + include 0 in the range for _reflns.pdbx_aniso_B_tensor_eigenvalue_* + Mark _struct.pdbx_structure_determination_methodology as internal to WWPDB</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.367</td> <td class="my-monospace">2022-06-01</td> <td class="my-monospace"> Changes (ep): + Extend _pdbx_audit_support.funding_organization enumeration + Add "POSITION SENSITIVE DETECTOR" to _diffrn_detector.detector enumeration + Add Careless and Xtrapol8 to _software.name PDBX enumeration + Add "5ATM 3HE, CURVED 120X30 DEGREES" to _diffrn_detector.type enumeration</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.366</td> <td class="my-monospace">2022-04-13</td> <td class="my-monospace"> Changes (ep): + Add _em_depui.composite_map_deposition and _emd_depui.composite_map_deposition + Extend _pdbx_audit_support.funding_organization enumeration + Add pdbx_data_usage category</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.365</td> <td class="my-monospace">2022-03-16</td> <td class="my-monospace"> Changes (ep): + Cleanup enumeration of _pdbx_initial_refinement_model.source_name + Add PRIME-X to _software.name enumeration + Enhance description of _entity_poly.pdbx_seq_one_letter_code_can to describe chromophore handling + Extend _pdbx_audit_support.funding_organization enumeration</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.364</td> <td class="my-monospace">2022-02-23</td> <td class="my-monospace"> Changes (ep/Aaron Brewster): + Enchanced descriptions and addition of attributes to better support serial crystallography. New definitions: _pdbx_serial_crystallography_data_reduction.lattices_merged _cell.pdbx_esd_method _reflns.pdbx_CC_split_method, _exptl_crystal.pdbx_mosaic_method _exptl_crystal.pdbx_mosaic_block_size _exptl_crystal.pdbx_mosaic_block_size_esd _pdbx_crystal_alignment.overall_beam_divergence _pdbx_crystal_alignment.overall_beam_divergence_esd Updated definitions (description, ranges) _pdbx_crystal_alignment.crossfire_x, _pdbx_crystal_alignment.crossfire_x_esd, _pdbx_crystal_alignment.crossfire_y, _pdbx_crystal_alignment.crossfire_y_esd, _exptl_crystal.pdbx_mosaicity + Extend _pdbx_audit_support.funding_organization enumeration + Added 'ESRF BEAMLINE BM07' to _diffrn_source.type enumeration and 'BM07' to diffrn_source.pdbx_synchrotron_beamline + Clean up enumeration in pdbx_initial_refinement_model.source_name + Add pdbx_chem_comp_audit to audit_group</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.363</td> <td class="my-monospace">2022-02-02</td> <td class="my-monospace"> Changes (ep): + Adjust enumerations in _database_2.database_id + Extend _pdbx_sudit_support.funding_organization enumeration</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.362</td> <td class="my-monospace">2022-01-12</td> <td class="my-monospace"> Changes (ep): + Introduce _pdbx_entity_remapping and _pdbx_chain_remapping categories + Extend _pdbx_sudit_support.funding_organization enumeration + Add "xia2.multiplex" to _software.name enumeration + Extend enumeration _database_2.database_id to include "AFDB", "SMR", "MODBASE", "AFDB" + Add _struct.pdbx_structure_determination_methodology + Add "EMS Lacey Carbon" to _emd_grid.model and _em_sample_support.grid_type</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.361</td> <td class="my-monospace">2021-12-07</td> <td class="my-monospace"> Changes (ep/Antanas Vaitkus): + Correct capitalization of angstrom in descriptions + Correct capitalization of kelvins as a unit. Remove the word "degrees" in context of it + Add "SCINTILLATION" to _diffrn_detector.detector enumeration + Add "Cyberstar LaBr3", "DECTRIS EIGER2 S 1M", "DECTRIS EIGER2 S 4M", "DECTRIS EIGER2 S 9M", "DECTRIS EIGER2 S 16M" to _diffrn_detector.type deposition enumeration + Add "ESRF BEAMLINE ID22" to _diffrn_source.type enumertion + Add "GSAS", "ISOLDE" and "PRODD" to _software.name enumeration + Extend _pdbx_sudit_support.funding_organization enumeration + Add "TFS Selectris" and "TFS Selectris X" to _em_imaging_optics.energyfilter_name + Add "FEI tomography" to _em_software.name enumeration + Add pdbx_initial_refinement_model category and definitions for _em_3d_fitting.initial_refinement_model_id, _em_3d_fitting_list.chain_id, _em_3d_fitting_list.chain_residue_range + Add _pdbx_struct_oper_list.full_matrix</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.360</td> <td class="my-monospace">2021-10-31</td> <td class="my-monospace"> Changes (ep): + pdbx_prd_audit.processing_site enumeration change PDBe to PDBE to be consistent with rest of dictionary. + Extend _pdbx_audit_support.funding_organization enumeration. + _refine.ls_R_factor_R_free and _refine.ls_R_factor_obs remove over broad advisory range + Add "RIGAKU PhotonJet-R" to _diffrn_source.type enumeration + Enhance pdb_id and pdb_id_ci to support PDB extented codes</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.359</td> <td class="my-monospace">2021-10-11</td> <td class="my-monospace"> Changes (ep): + Update deposition help text for _diffrn.abient_temp + Extend _pdbx_audit_support.funding_organization enumeration. + Add "BRUKER IMUS 3.0 MICROFOCUS" to _diffrn_source.type enumeration + Add IPET and TomoAlign to _em_software.name enumeration + Change pdx_item_tye for _pdbx_struct_ref_seq_depositor_info.db_seq_one_letter_code</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.358</td> <td class="my-monospace">2021-09-09</td> <td class="my-monospace"> Changes (ep): + Correct advisory limits for _em_image_recording.avg_electron_dose_per_subtomogram and _emd_image_recording.average_electron_dose_per_subtomogram + Extend _pdbx_audit_support.funding_organization enumeration.</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.357</td> <td class="my-monospace">2021-09-01</td> <td class="my-monospace"> Changes (ep): + Using new conditional context for pdbx_contact_author, selectively all principal investogator information out + Extend _pdbx_audit_support.funding_organization enumeration + Extend _em_software.name and _emd_software.name enumerations + Add _em_image_recording.avg_electron_dose_per_subtomogram and _emd_image_recording.average_electron_dose_per_subtomogram + Extend _em_map.type, _emd_map.type and _emd_map_upload.type enumerations</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.356</td> <td class="my-monospace">2021-08-03</td> <td class="my-monospace"> Changes (ep): + Extend _pdbx_audit_support.funding_organization enumeration. + Add internal _struct.pdbx_center_of_mass_x, _struct.pdbx_center_of_mass_y, _struct.pdbx_center_of_mass_z. + Add _em_entity_assembly.chimera and _emd_supramolecule.chimera</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.355</td> <td class="my-monospace">2021-07-18</td> <td class="my-monospace"> Changes (ep): + Extend _pdbx_audit_support.funding_organization enumeration. + Correct captilatization in description of _pdbx_nmr_spectrometer.field_strength + Add "SSRF BEAMLINE BL10U2" and "SSRF BEAMLINE BL02U1" to _diffrn_source.type enumeration</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.354</td> <td class="my-monospace">2021-07-08</td> <td class="my-monospace"> Changes (ep): + Extend _pdbx_audit_support.funding_organization enumeration. + Make _pdbx_contact_author.name_salutation non-mandatory</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.353</td> <td class="my-monospace">2021-06-30</td> <td class="my-monospace"> Changes (ep): + Add "GN" to _pdbx_nmr_spectrometer.model enumeration + Update examples for _database_2.pdbx_database_accession and _database_2.pdbx_DOI + Update enumeration and details for _pdbx_nmr_spectrometer.field_strength + Extend _pdbx_audit_support.funding_organization enumeration. + Update description of _pdbx_molecule_features.prd_id + Add 'UCSF ChimeraX' to _em_software.name + Mark _struct.pdbx_descriptor as local context + Add limits for _refine.ls_percent_reflns_obs + Add _em_author_list.identifier_ORCID and _emd_author_list.identifier_ORCID</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.352</td> <td class="my-monospace">2021-06-08</td> <td class="my-monospace"> Changes (ep): + Add _item_enumeration.pdbx_value_display for _exptl.method + Add SIFTS extension - creating categories _pdbx_sifts_xref_db, _pdbx_sifts_xref_db_segments, _pdbx_sifts_unp_segments and attributes _atom_site.pdbx_label_index, _atom_site.pdbx_sifts_xref_db_name, _atom_site.pdbx_sifts_xref_db_acc, _atom_site.pdbx_sifts_xref_db_num, _atom_site.pdbx_sifts_xref_db_res</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.351</td> <td class="my-monospace">2021-06-02</td> <td class="my-monospace"> Changes (ep): + Add 'NMR Distance Restraints' and 'electron microscopy' to enumerations for _pdbx_struct_assembly_auth_evidence.experimental_support and pdbx_struct_assembly_auth_evidence_depositor_info.experimental_support + Create new attribute _pdbx_depui_status_flags.has_accepted_assemblies + Create new attribute _pdbx_database_status.date_accepted_terms_and_conditions + Update description of _reflns.pdbx_redundancy + Extend _pdbx_audit_support.funding_organization enumeration. + Add 'TFS TUNDRA' to _em_imaging.microscope_model and _emd_microscopy.microscope</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.350</td> <td class="my-monospace">2021-04-19</td> <td class="my-monospace"> Changes (ep): + Add hard limits to _emd_sectioning_focused_ion_beam.initial_thickness and _em_focused_ion_beam.initial_thickness + Update description of _struct_ref_seq_dif.pdbx_auth_seq_num + Add "ALS BREAMLINE 2.0.1" to _diffrn_source.type enumeration. "2.0.1" added to enumeration for _diffrn_source.pdbx_synchrotron_beamline. + Update _pdbx_audit_support.funding_organization enumeration + Add 'subTOM' to _em_software.name enumeration and _emd_software.name + Deprecate _emd_map_upload.pixel_spacing and replace by _emd_map_upload.pixel_spacing_{x,y,z} + Change _emd_map.symmetry_space_group and _em_map.symmetry_space_group type from line to int + Add acetonitrile to enumeration for _pdbx_nmr_chem_shift_ref.mol_common_name</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.349</td> <td class="my-monospace">2021-03-15</td> <td class="my-monospace"> Changes (ep/jw): + Add category pdbx_audit_conform + Update funding enumerations _pdbx_audit_support.funding_organization + Update descriptions for _entity_poly.pdbx_seq_one_letter_code_can and _entity_poly.pdbx_seq_one_letter_code + Add "PSI JUNGFRAU 4M" to _diffrn_detector.type enumerations</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.348</td> <td class="my-monospace">2021-03-10</td> <td class="my-monospace"> Changes (jt): + Update funding enumerations _pdbx_audit_support.funding_organization</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.347</td> <td class="my-monospace">2021-02-16</td> <td class="my-monospace"> Changes (Global Phasing Ltd.): + Add items for anomalous diffraction statistics _reflns.pdbx_redundancy_anomalous, _reflns.pdbx_CC_half_anomalous, _reflns.pdbx_absDiff_over_sigma_anomalous, _reflns.pdbx_percent_possible_anomalous, _reflns_shell.pdbx_redundancy_anomalous, _reflns_shell.pdbx_CC_half_anomalous, _reflns_shell.pdbx_absDiff_over_sigma_anomalous, and _reflns_shell.pdbx_percent_possible_anomalous + Add items to cater for anistropic diffraction Ellipsoid fit to the cut-off surface: _reflns.pdbx_aniso_diffraction_limit_axis_?_ortho[?], _reflns.pdbx_aniso_diffraction_limit_? Anisotropic B tensor: _reflns.pdbx_aniso_B_tensor_eigenvector_?_ortho[?], _reflns.pdbx_aniso_B_tensor_eigenvalue_? Statistics specific to anisotropic diffraction: _reflns.pdbx_percent_possible_*, _reflns_shell.pdbx_percent_possible_* for ellipsoidal/spherical and anomalous/non-anomalous diffraction. Also add _reflns.pdbx_orthogonalization_convention and new subcategories unit_vector and eigendecomposition + Add items for a per-reflection signal and parameter-free definition of the cut-off surface _reflns.pdbx_observed_signal_threshold, _reflns.pdbx_signal_type, _reflns.pdbx_signal_details, reflns.pdbx_signal_software_id, _pdbx_refln_signal_binning.ordinal, _pdbx_refln_signal_binning.upper_threshold, _refln.pdbx_signal, _refln.pdbx_signal_status + Add and modify items to cater better for umerged reflection data Add _diffrn_refln.pdbx_detector_x, _diffrn_refln.pdbx_detector_y, _diffrn_refln.pdbx_scale_value Modify _diffrn_refln.pdbx_image_id, _diffrn_refln.pdbx_scan_angle</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.346</td> <td class="my-monospace">2021-01-20</td> <td class="my-monospace"> Changes (ep): + Add LAUENORM to _software.name enumeration + Add 'JEOL 1000EES' to _em_imaging.microscope_model and _emd_microscopy.microscope + Add _citation.pdbx_database_id_patent to record patents + Update funding enumerations _pdbx_audit_support.funding_organization</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.345</td> <td class="my-monospace">2021-01-05</td> <td class="my-monospace"> Changes (ep/mw/cv): + Addition of _diffrn_refln.pdbx_image_id and _diffrn_refln.pdbx_scan_angle + Duplicate words cleanup in descriptions + Add enumerations for _pdbx_exptl_crystal_grow_sol.volume_units and _pdbx_exptl_crystal_grow_comp.conc_units + Add usage information to description of _atom_site + Update funding enumerations _pdbx_audit_support.funding_organization + Add 'ARP/wARP' to _em_software.name and _emd_software.name enumeration + Add _database_2.pdbx_database_acceession and _database_2.pdbx_DOI + Add _emd_specialist_optics.details and _em_imaging_optics.details + Change attributes to non-mandatory: _em_diffraction_stats.overall_phase_error, _em_diffraction_stats.overall_phase_residual, _em_diffraction_stats.r_sym, _emd_crystallography_stats.r_sym, _emd_crystallography_stats.overall_phase_error, and _emd_crystallography_stats.overall_phase_residual. + Change type to float for _em_focused_ion_beam.duration and _emd_sectioning_focused_ion_beam.duration</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.344</td> <td class="my-monospace">2020-11-10</td> <td class="my-monospace"> Changes (ep): + Create categories _em_virus_synthetic and _emd_virus_synthetic + Add 'TFE' to _pdbx_nmr_chem_shift_ref.mol_common_name enumeration + Update funding enumerations + Make _diffrn_refln.standard_code and _diffrn_refln.scale_group_code non-mandatory</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.343</td> <td class="my-monospace">2020-10-27</td> <td class="my-monospace"> Changes (ep): + Remove unused definition of non_negative_int type + add STOPGAP and novaSTA to _emd_software.name and _em_software.name enumerations + add PRIME and ULTIMA to _software.name enumeration + Update funding enumerations + Set upper limits for _reflns_shell.Rmerge_I_obs and _reflns.pdbx_Rmerge_I_obs + Change code for _pdbx_depui_entry_details.replace_pdb_id to pdbx_PDB_obsoleted_db_id + Extend enumeration for _struct_conf_type.id to include "BEND" and "OTHER" + Add SYNTHETIC to _emd_supramolecule.source and _em_entity_assembly.source + Add categories _em_entity_assembly_synthetic and _emd_synthetic_source + Add attribute _atom_site.pdbx_atom_ambiguity + Add category pdbx_database_doi</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.342</td> <td class="my-monospace">2020-10-05</td> <td class="my-monospace"> Changes (ep): + Remove trailing newlines from dictionary + Update funding enumerations + Add 'TMSP' to _pdbx_nmr_chem_shift_ref.mol_common_name enumeration + Add 'CRISpy' to _software.name enumeration + Add pdbx_PDB_obsoleted_db_id for list of PDB ids that are obsoleted + Add upper limit for reflns_shell.percent_possible_all + Add AUCO to enumeraion for _pdbx_database_status.status_code_cs and _pdbx_database_status.status_code_mr</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.341</td> <td class="my-monospace">2020-09-08</td> <td class="my-monospace"> Changes (ep): + Update funding enumerations + Add advisory limits for _em_focused_io_beam.final_thickness and _emd_sectioning_focused_ion_beam.final_thickness + Add 'methylene carbons' to _pdbx_nmr_chem_shift_ref.atom_group enumeraton + Change type of struct_ncs_oper.id, struct_ncs_end_gen.oper_id, pdbx_struct_ncs_virus_gen.oper_id to int to match current PDB practice + Change _pdbx_struct_assembly.details mandatory based on current use. + Change type of pdbx_database_released.db_id type from line to pdbx_related_db_id</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.340</td> <td class="my-monospace">2020-08-19</td> <td class="my-monospace"> Changes (ep): + Create enumeration for pdbx_chem_comp_feture.type + Remove ranges for _diffrn_source.pdbx_wavelength_list as not compatible with code type 'line' + Update funding enumerations + Add SHELXT to _software.name enumeration + Remove obsolete enumberations from chem_comp.type 'D-saccharide 1,4 and 1,6 linking', 'L-saccharide 1,4 and 1,4 linking', 'L-saccharide 1,4 and 1,6 linking', 'D-saccharide 1,4 and 1,4 linking' + Close the enumerations for _pdbx_nmr_constraint_file.constraint_subtype and _pdbx_nmr_systematic_chem_shift_offset.type + Range for _emd_helical_parameters.delta_phi extended to include 180.0 + Add 'NMR relaxation study' to _pdbx_struct_assembly_auth_evidence.experimental_support eumeration</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.339</td> <td class="my-monospace">2020-07-20</td> <td class="my-monospace"> Changes (ep): + Add "Synthetic opioid" and "Transition state mimetic' to _pdbx_reference_molecule.class and _pdbx_molecule_features.class enumerations. + Add "The Mark Foundation", "Canada Research Chairs" and "The Swedish Foundation for Strategic Research" to _pdbx_audit_support.funding_organization" + Add 'PELCO Ultrathin Carbon with Lacey Carbon' to _em_sample_support.grid_type enumeration</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.338</td> <td class="my-monospace">2020-07-11</td> <td class="my-monospace"> Changes (ep): + Add "MANACA" to _diffrn_source.pdbx_synchrtron_beamline, "LNLS SIRUS BEAMLINE MANACA" to _diffrn_source.type and "LNLS SIRUS" to _diffrn_source.pdbx_synchrotron enumerations. + Update descripion of _atom_site.id to reflect current PDB usage + Document that attributes in _reflns_shell category apply to multiple shells and not just highest resolution shell + Require _emd_helical_parameters.delta_z to be greater that 0 + Add "The Mark Foundation" to _pdbx_audit_support.funding_organization" + Correct "deposition_email" type to be POSIX compliant</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.337</td> <td class="my-monospace">2020-06-23</td> <td class="my-monospace"> Changes (ep): + Add 'Transport activator' to _pdbx_reference_molecule.class and _pdbx_molecule_features.class + Remove 'ELETTRA BEAMLINE XRD2' to _diffrn_source.type and _diffrn_source.pdbx_synchrotron_beamline. 'ELETTRA BEAMLINE 11.2C' is the same one. + Add 'S-Glycosylation' to enumeration for _struct_conn.pdbx_role + Add 'eTasED' to em_software.name enumeration + Restrict type of em_single_particle_entity.id to integer + Add 'Remediation' to pdbx_audit_revision_details.type enumeration</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.336</td> <td class="my-monospace">2020-06-08</td> <td class="my-monospace"> Changes (ep): + Add new funding agency: 'Consortia for HIV/AIDS Vaccine Development' and 'Tower Cancer Research Foundation' + Synchronize pdbx_molecule_features.class enumeration from _pdbx_reference_molecule.class + _em_software.name enumeration add DIALS + Add 'SSRL BEAMLINE BL12-1' to _diffrn_source.type enumeration</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.335</td> <td class="my-monospace">2020-06-05</td> <td class="my-monospace"> Changes (ep): + Remove local contexts from the following categories: _pdbx_chem_comp_synonyms, _pdbx_chem_comp_related, _pdbx_chem_comp_atom_related, _pdbx_entity_branch_list, _pdbx_entity_branch_link, _pdbx_entity_branch, _pdbx_branch_scheme + Remove local contexts from the following attributs: _struct_conn.pdbx_ptnr1_atom_stereo_config, _struct_conn.pdbx_ptnr1_leaving_atom_id, _struct_conn.pdbx_ptnr2_atom_stereo_config, _struct_conn.pdbx_ptnr2_leaving_atom_id, _entity_name_com.pdbx_provenance</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.334</td> <td class="my-monospace">2020-05-26</td> <td class="my-monospace"> Changes (ep): + Incorpoate branch chain dictionary extension + Extend enumeration of pdbx_audit_support.funding_organization + Correct diffrn_source.type for "ORNL Spallation Neutron Source BEAMLINE MANDI" to indicate spallation source. + Add "oligosaccharide" to _pdbx_reference_entity_poly.type + Add 'cxi.merge' to _software.name enumeration. Remove 'BUSTER-TNT' + Limit _reflns_shell.Rmerge_I_obs in deposition + Extend enumeration of _pdbx_reference_molecule.class</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.333</td> <td class="my-monospace">2020-04-13</td> <td class="my-monospace"> Changes (jt/ep): + Add 'ELETTRA BEAMLINE XRD2' to _diffrn_source.type and _diffrn_source.pdbx_synchrotron_beamline + Add new funding agency: 'Technology Agency of the Czech Republic', 'German Federal Ministry for Economic Affairs and Energy', 'Alzheimer Forschung Initiative e.V.', 'Spar Nord Foundation' + Add "GOLD" enumeration to em_support_film.material + Add "FEI Falcon IV (4k X 4k)" to _em_image_recording.film_or_detector_model + Add "JADAS" and "crYOLO" to em_software.name + Add _pdbx_branch_scheme.pdb_ins_code + Remove local contet from _pdbx_database_status.status_code_nmr_data</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.332</td> <td class="my-monospace">2020-03-03</td> <td class="my-monospace"> Changes (pkeller/ep): + Changes to pdbx_refine_tls_group to enforce consistency between TLS group definitions and structure: Make the following items children of the corresponding items in atom_site: _pdbx_refine_tls_group.beg_auth_asym_id, _pdbx_refine_tls_group.beg_auth_seq_id, _pdbx_refine_tls_group.end_label_asym_id, _pdbx_refine_tls_group.end_auth_seq_id Add new items _pdbx_refine_tls_group.beg_PDB_ins_code, _pdbx_refine_tls_group.end_PDB_ins_code + Add _atom_type.pdbx_scat_Cromer_Mann_a6 and _atom_type.pdbx_scat_Cromer_Mann_b6 + Add PDBC to examples/enumerations for _pdbx_database_status.deposit_site, _pdbx_database_status.process_site, pdbx_chem_comp_audit.processing_site, _chem_comp.pdbx_processing_site, _pdbx_prd_audit.processing_site, pdbx_family_prd_audit.processing_site, em_admin.deposition_site, _pdbx_chem_comp_model_audit.processing_site, _emd_admin.deposition_site + Set upper limit for _refine.ls_R_factor_obs, refine.ls_R_factor_R_free, refine.ls_R_factor_R_work to 1.0 + Change hard limits to soft for _em_imaging.accelerating_voltage + Extend pdbx_audit_support enumeration + Add CoMAND to _pdbx_nmr_software.name enumeration + Make _pdbx_reference_entity_sequence.type and _pdbx_reference_entity_list.type into enumerations.</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.331</td> <td class="my-monospace">2020-02-04</td> <td class="my-monospace"> Changes (ep): + Add "branched" to pdbx_reference_molecule.represent_as + Add 'HITACHI H3000 UHVEM' to _em_imaging.microscope_model + Extend pdbx_audit_support enumeration</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.330</td> <td class="my-monospace">2020-01-26</td> <td class="my-monospace"> Changes (ep): + Add _pdbx_chem_comp_synoyms.ordinal as key for category (make mandatory) + Extend deposition enumeration for pdbx_database_related to include 'split' and 'complete structure' + Extend pdbx_nmr_software.name (I-PINE) + Limit _reflns.pdc_Rrim_I_all to be less than 5 + Extend pdbx_audit_support enumeration + Add 'ICON' and 'ISOLDE' to _em_software.name and _emd_software.name enumeration. Remove duplicate 'CryoSPARC' + Improve description of _em_buffer.pH + Add 'NICKEL/TITANIUM' to _em_sample_support.grid_material and _emd_grid.material + Create deposition enumeration for _emd_specialist_optics.phase_plate and _em_imaging_optics.phase_plate + Add GOLD to emd_support_film.material</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.329</td> <td class="my-monospace">2019-12-18</td> <td class="my-monospace"> Changes (ep): + Extend _diffrn_detector.type enumeration to include BIX-3, BIX-4 and iBIX + Add _pdbx_chem_comp_synoyms.ordinal as future key</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.328</td> <td class="my-monospace">2019-11-26</td> <td class="my-monospace"> Changes (ep): + Extend _pdbx_audit_support.funding_organization + Add alpha and beta linking D/L saccharide to _chem_comp.type + Add 'CONDENSED IUPAC CARBOHYDRATE SYMBOL','IUPAC CARBOHYDRATE SYMBOL' 'SNFG CARBOHYDRATE SYMBOL' to _pdbx_chem_comp_identifier.type + Corrected example for pdbx_entity_branch_link + Add 'CARBOHYDRATE ANOMER', 'CARBOHYDRATE ISOMER', 'CARBOHYDRATE RING' to examples for pdbx_chem_comp_feature.type</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.327</td> <td class="my-monospace">2019-11-12</td> <td class="my-monospace"> Changes (ep): + Extend pdbx_database_status to include nmr_data contents. + Reorganize _pdbx_audit_support.funding_organization such that details will include the country. + Extend em_software.name to include ERRASER + Set upper limit for _diffrn.ambient_temp to 450 + Add TFA to _pdbx_nmr_chem_shift_ref.mol_common_name. Add fluorine to _pdbx_nmr_chem_shift_ref.atom_group + Add 'TFS TAOLS' to _em_imaging.microscope_model + Correct soft limits for _reflns.percent_possible_obs + Make _struct_keywords.pdbx_keywords mandatory for deposition + Add soft limits for _reflns.pdbx_CC_half</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.326</td> <td class="my-monospace">2019-10-28</td> <td class="my-monospace"> Changes (ep): + Remove duplicate enumerations from _diffrn_detector.type + Correct deposition_email type name</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.325</td> <td class="my-monospace">2019-10-21</td> <td class="my-monospace"> Changes (ep): + Add newer DECTRIS EIGER detectors to _diffrn_detector.type + Extend _pdbx_audit_support.funding_organiation enumerations + _em_imaging.specimen_holder_model and _emd_microscopy.specimen_holder_model add 'GATAN ELSA 698 SINGLE TILT LIQUID NITROGEN CRYO TRANSFER HOLDER' and 'FISCHIONE 2550' to enumeration + _em_imaging.microscope_model and _emd_microscopy.microscope add 'TFS GLACIOS' and 'TFS KRIOS' to enumeration.</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.324</td> <td class="my-monospace">2019-10-10</td> <td class="my-monospace"> Changes (ep): + Adjust range limits for _reflns.pdbx_CC_star, _reflns_shell.pdbx_CC_star + Adjust range limits for _reflns.pdbx_R_split, _reflns_shell.pdbx_R_split + For deposition, set limits for _exptl_crystal_grow.temp + Not not allow 0 values during deposition for reflns_shell.Rmerge_I_all, _reflns_shell.Rmerge_I_obs, _reflns.pdbx_Rmerge_I_obs, _reflns.pdbx_Rmerge_I_all, reflns.pdbx_Rsym_value, _reflns_shell.pdbx_Rsym_value + Create internal enumeration for struct_ref_seq_dif.details + Expand _pdbx_audit_support.funding_organiation enumerations + Use a new type deposition_email for pdbx_contact_author.email</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.323</td> <td class="my-monospace">2019-09-11</td> <td class="my-monospace"> Changes (ep): + Expand _pdbx_audit_support.funding_organiation enumerations + Provide upper limit for _refine_ls_shell.R_factor_R_free + Added _pdbx_depui_status_flags.post_rel_replacement_reason_details and _pdbx_audit_revision_details.details + Update description of _atom_site.label_alt_id + Add _refine.pdbx_R_complete and _refine_ls_shell.pdbx_R_complete</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.322</td> <td class="my-monospace">2019-08-19</td> <td class="my-monospace"> Changes (ep/jmb): + Correct capitalization in _pdbx_nmr_spectrometer.model + Expand _diffrn_detector.type, _pdbx_audit_support.funding_organiation enumerations + Adjust advisory limits for _reflns.pdbx_Rrim_I_all, _reflns.pdbx_Rpim_I_all, _reflns.pdbx_R_split + Add _atom_type.pdbx_scat_Z, _atom_type.pdbx_N_electrons + Define emd_id_ci and pdb_id_ci for case insensitive id codes</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.321</td> <td class="my-monospace">2019-07-10</td> <td class="my-monospace"> Changes (ep): + Expand _diffrn_detector.type, _software.name, _pdbx_audit_support.funding_organiation enumerations + Make _pdbx_refine_tls_group.pdbx_refine_id and _pdbx_refine_tls.pdbx_refine_id mandatory</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.320</td> <td class="my-monospace">2019-06-11</td> <td class="my-monospace"> Changes (ep/jmb): + Add enumeration for _struct_conn.pdbx_role + Adjust descriptions involving country to include region. + Rename pdbx_entity_descriptor to pdbx_entity_branch_descriptor + Adjust limits of _emd_image_recording.average_electron_dose_per_image and _em_image_recording.avg_electron_dose_per_image" + Add DECTRIS EIGER2 detectors to _diffrn_detector.type + Increase high soft limit for _reflns_shell.pdbx_Rsym_value</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.319</td> <td class="my-monospace">2019-05-21</td> <td class="my-monospace"> Changes (ep/rp): + Add emd_map_upload extension + Remove local context from _pdbx_entry_details.has_ligand_of_interest + Add Fragon to software.name enumeration + Make pdbx_nmr_chem_shift_software.software_label non-mandatory</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.318</td> <td class="my-monospace">2019-05-16</td> <td class="my-monospace"> Changes (ep/jb): + Add PDB-REDO to software.name enumeration + Set upper limit for _exptl_crystal_grow.pH to 14.0 + Update examples for exptl_crystal_grow.method to match enumeration + Add newer AVANCE spectrometers to _pdbx_nmr_spectrometer.model and cleanup old partial names</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.317</td> <td class="my-monospace">2019-04-24</td> <td class="my-monospace"> Changes (ep): + Make _emd_depui.obsolete_instructions, _em_depui.obsolete_instructions, em_admin.replace_existing_entry_flag and _emd_admin.replace_existing_entry_flag non-mandatory. + Extend _pdbx_audit_support.funding_organization enumeration + Increase soft upper limit for _reflns_shell.Rmerge_I_obs + Add _pdbx_depui_status_flags.post_rel_replacement_reason + Add _pdbx_database_status.post_rel_recvd_coord_date, _pdbx_database_status.post_rel_recvd_coord, _pdbx_database_status.post_rel_status. + Create type 'id_list_spc' for an id list with spaces. Use for pdbx_struct_assembly_gen_depositor_info.chain_id_list</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.316</td> <td class="my-monospace">2019-04-11</td> <td class="my-monospace"> Changes (ep): + Add Amber to _em_software.name and _emd_software.name enumeration + Extend _pdbx_audit_support.funding_organization + Change type of _pdbx_struct_assembly_gen.asym_id_list to text</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.315</td> <td class="my-monospace">2019-04-01</td> <td class="my-monospace"> Changes (ep): + Add _pdbx_entry_details.has_ligand_of_interest flag + Add 'carbonyl carbon' to _pdbx_nmr_chem_shift_ref.atom_group enumeration + Extend _pdbx_audit_support.funding_organization + Create deposition enumeration for _pdbx_nmr_software.name</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.314</td> <td class="my-monospace">2019-03-20</td> <td class="my-monospace"> Changes (ep): + Extend _pdbx_audit_support.funding_organization + Restrict _entity.pdbx_number_of_molecules to integers + Remove polysaccharide(D) and polysaccharide(L) type from entity_poly.type + Update example for _audit_author.identifier_ORCID and _citation_author.identifier_ORCID with an invalid checksum + Add "LaB6 thermoionic" to _diffrn_source.type enumeration + Add emClairity to em_software.name and emd_software.name enumeration + Change lower limit for _refine.ls_d_res_low, _refine_ls_shell.d_res_low, _refine_ls_shell.d_res_high to not include 0.0 + Remove enumerations from _struct_conn.pdbx_role, _struct_conn.ptnr1_role, _struct_conn.ptnr2_role</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.313</td> <td class="my-monospace">2019-02-03</td> <td class="my-monospace"> Changes (ep): + Revert change for _refine.pdbx_starting_model being mandatory in deposition + Add enumeration for struct_conn.conn_type_id + Extend _pdbx_audit_support.funding_organization with KU Leuven and Lundbeckfonden</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.312</td> <td class="my-monospace">2019-01-29</td> <td class="my-monospace"> Changes (ep): + Adjust contexts for _pdbx_chem_comp_audit.annotator and _pdbx_chem_comp_audit.details and chem_comp-extension. + Extend _pdbx_audit_support.funding_organization enumeration + Set maximum for _em_imaging.accelerating_voltage to 400 + Require _reflns.pdbx_number_measured_all to be positive + For deposition, make _refine.pdbx_method_to_determine_struct, _refine.pdbx_starting_model, _reflns_shell.number_unique_obs mandatory + Add 'Excillum MetalJet D2 70 kV' and 'ELETTRA BEAMLINE 11.2C to _diffrn_source.type enumeration + Change _em_3d_fitting_list.pdb_chain_id type to asym_id</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.311</td> <td class="my-monospace">2018-12-10</td> <td class="my-monospace"> Changes (ep): + Extend chem_comp-extension by adding _pdbx_chem_comp_synonyms.type and _chem_comp_atom.pdbx_stnd_atom_id</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.310</td> <td class="my-monospace">2018-12-03</td> <td class="my-monospace"> Changes (ep): + Change ec-type to support new enzyme classifications + Add TRANSLOCASE to _struct_keywords.pdbx_keywords enumeration</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.309</td> <td class="my-monospace">2018-11-09</td> <td class="my-monospace"> + Add various em_* categories to em_group + Add 'Science and Technology Funding Council' and 'Global Challenges Research Fund' to _pdbx_audit_support.funding_organization + _pdbx_audit_support.funding_organization mandatory for deposition + _em_imaging.c2_aperture_diameter units changed to microns and lower limit changed to 1 + _pdbx_nmr_chem_shift_ref.mol_common_name add glucose to enumeration</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.308</td> <td class="my-monospace">2018-11-08</td> <td class="my-monospace"> Changes (ep): + Add Buccaneer to _em_software.name/_emd_software.name enumeration + Add enumeration to _pdbx_prd_audit.processing_site + Add CHESS BEAMLINE G3, PAL-XFEL BEAMLINE NCI beamlines + Add Rigaku HyPic-6000HE detector + Add newer AVANCE spectrometers to _pdbx_nmr_spectrometer.model + Adjust limits for _refine.ls_d_res_high to not include 0 + Remove use of non_negative_int as regular expression incorrect + Add citation_doi and exp_data_doi for use in citation and pdbx_related_exp_data_set</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.307</td> <td class="my-monospace">2018-10-15</td> <td class="my-monospace"> Changes (ep/jmb): + Correct examples for _pdbx_related_exp_data_set + _diffrn_detector.type correct type for 'BRUKER PHOTON 100' + Extend audit content types to support 'Chemical component' + Add cisTEM and Toaz to em_software.name and emd_software.name + Update _pdbx_audit_support.funding_organization enumeration</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.306</td> <td class="my-monospace">2018-09-04</td> <td class="my-monospace"> Changes (ep): + Correct _diffrn_source.type enumeration for 'MICROMAX-003' + Extend _pdbx_audit_support.funding_organization enumeration + Add Diamond beamlines VMXi and VMXm to _diffrn_source.type + Add "Gorgon" and "Pathwalking" to _em_software.name and _emd_software.name</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.305</td> <td class="my-monospace">2018-08-16</td> <td class="my-monospace"> Changes (ep): + Update entity_branch_extension + Update limits of pdbx_serial_crystallography_sample_delivery_injection.injector_temperature</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.304</td> <td class="my-monospace">2018-08-01</td> <td class="my-monospace"> Changes (ep): + Extend _pdbx_audit_support.funding_organization enumeration + Correct _emd_software.emd_microscopy_id parent relationship + Update entity_branch_extension</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.303</td> <td class="my-monospace">2018-07-23</td> <td class="my-monospace"> Changes (ep): + Extend _software.language enumeration + Extend _pdbx_audit_support.funding_organization enumeration + Add COUNTER-DIFFUSION to deposition enumeration for _exptl_crystal_grow.method + Add 'JEOL CRYOSPECPORTER' to _em_imaging.specimen_holder_model and _emd_microscopy.specimen_holder_model enumerations + Extend deposition enumerations for _software.name + Add range limits to xfel extension + Require _atom_site.pdbx_PDB_model_num non-zero positive integer + For deposition, require _pdbx_nmr_representative.conformer_id to be positive integer</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.302</td> <td class="my-monospace">2018-07-03</td> <td class="my-monospace"> Changes (ep): + Update xfel extension to v3</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.301</td> <td class="my-monospace">2018-06-25</td> <td class="my-monospace"> Changes (ep): + Update point_group regular expression type + Add beamline 'SACLA BEAMLINE BL2' and 'APS BEAMLINE 34-ID' to _diffrn_source.type enumeration + Change context of _citation_author.identifier_ORCID to make public + Extend enumerations with _pdbx_audit_support.funding_organization + Provide deposition specific help text for _pdbx_nmr_representative.conformer_id + Make _pdbx_contact_author.identifier_ORCID mandatory during deposition</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.300</td> <td class="my-monospace">2018-06-07</td> <td class="my-monospace"> Changes (ep): + Update pdbx_deposit_group.group_type enumeration + Extend ranges to match EMDB schema for em_imaging.calibrated_defocus_max, _emd_microscopy.calibrated_defocus_max, _em_start_model.random_conical_tilt_angle, _emd_startup_model.random_conical_tilt_angle, _emd_microscopy.nominal_cs, _em_imaging.nominal_cs + Change units for emd_fiducial_markers.diameter and _em_fiducial_markers.diameter + Change units, range, and mandatory flag for _em_focused_ion_beam.dose_rate + Add 'JEOL 3100FEF' to em_imaging.microscope_model and emd_microscopy.microscope</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.299</td> <td class="my-monospace">2018-05-12</td> <td class="my-monospace"> Changes (ep): + Update pdbx_item_enumeration.detail for _pdbx_nmr_spectrometer.model + Extend enumeration for _pdbx_audit_support.funding_organization</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.298</td> <td class="my-monospace">2018-04-17</td> <td class="my-monospace"> Changes (ep): + Allow any number of digits for emd_id + Add "PSI JUNGFRAU 1M" to diffn_detector.type enumeration + Add pdbx_depui_status_flags.merged_fail</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.297</td> <td class="my-monospace">2018-03-22</td> <td class="my-monospace"> Changes (ep): + Add "MAXIMUM LIKELIHOOD" to _emd_angle_assignment.type and _emd_angle_assignment.type enumeration + Extend range for _em_image_recording.average_exposure_time and _emd_image_recording.average_exposure_time + Update diffrn_source category deposition related enumerations</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.296</td> <td class="my-monospace">2018-03-06</td> <td class="my-monospace"> Changes (ep): + Ensure _diffrn_detector.type, _diffrn_source.pdbx_synchrotron_beamline, _diffrn_source.pdbx_synchrotron_site enumerations complete + Extend _pdbx_audit_support.funding_organization enumeration + Add RNA-Puzzles to _pdbx_database_status.methods_development_category enumeration + Add _pdbx_audit_support.details</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.295</td> <td class="my-monospace">2018-02-07</td> <td class="my-monospace"> Changes (ep): + Add SIMBAD to _software.name enumeration + Add 'Sculptor', 'SUPER' and 'FOCUS' to em_software.name and _emd_software.name enumerations + Extend _pdbx_audit_support.funding_organization enumeration + Extend _pdbx_struct_assembly_auth_evidence_depositor_info.experimental_support enumeration + Change data type for _emd_specialist_optics.energyfilter_upper and _emd_specialist_optics.energyfilter_lower to float from text + Remove 4x3_matrix and implement 3x4_matrices + Add enumeration for _pdbx_deposit_group.group_type + Add _em_imaging_optics.energyfilter_slit_width and _emd_specialist_optics.energyfilter_slit_width. + Switch to closed enumeration for _pdbx_audit_support.funding_organization. + Change type of _pdbx_depui_validation_status_flags.adp_outliers_zero to text</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.294</td> <td class="my-monospace">2018-01-11</td> <td class="my-monospace"> Changes (ep): + Add "SLAC LCLS BEAMLINE AMO" to _diffrn_source.type, add "AMO" to _diffrn_source.pdbx_synchrotron_breamline to deposition enumerations. + Correct _diffrn_source.type for "BRUKER D8 QUEST" - is a SEALED TUBE. + Update/add range limits for _emd_microscopy.nominal_defocus_max, _emd_microscopy.nominal_defocus_min, _em_imaging.nominal_defocus_max, _em_imaging.nominal_defocus_min, _emd_image_recording.average_exposure_time, _em_image_recording.average_exposure_time, _emd_microscopy.nominal_magnification, _em_imaging.nominal_magnification, _em_focused_ion_beam.initial_thickness, _emd_sectioning_focused_ion_beam.initial_thickness, _em_focused_ion_beam.current, _emd_sectioning_focused_ion_beam.current, _em_imaging.nominal_cs, _em_imaging.c2_aperature_diameter, _em_imaging.calibrated_defocus_max, _emd_microscopy.nominal_cs, _emd_microscopy.c2_aperature_diameter, _emd_microscopy.calibrated_defocus_max. + Add 'ISOLDE" to enumeration for _software.name + Add "JEOL CRYO ARM 200" and "JEOL CRYO ARM 300" to _emd_microscopy.microscope and _em_imaging.microscope_model + Improve date_dep regular expression to prevent zero dates + Extend _pdbx_audit_support.funding_organization enumeration + Add 'HOLD FOR 8 WEEKS' to enumeration pdbx_database_status.dep_release_code_struct_fact + Add 'Bruker PHOTON III' and correct type of 'Bruker PHOTON II' in _diffrn_detector.type enumeration. + Add 'GRAPHENE OXIDE' to _em_sample_support.grid_material enumeration</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.293</td> <td class="my-monospace">2017-11-27</td> <td class="my-monospace"> Changes (ep/ar/cl): + Correct spelling errors in category_group_list.description + Add item_sub_category.id for TLS definitions in pdbx_refine_tls + Add _citation_author.identifier_ORCID with WWPDB_LOCAL context + Add SPOTITON to em_virtification.instrument/emd_vitrification.instrument enumeration + Add GATAN K3 detectors to _emd_image_recording.film_or_detector_model and _em_image_recording.film_or_detector_model enumeration + Add 'GIF Bioquantum' to _em_imaging_optics.energyfilter_name and _emd_specialist_optics.energyfilter_name enumeration + Update deposition description for citation_author.name + Add SwissFEL and PAL-XFEL enumerations to diffrn_source category enumerations + Set maximum of 30 seconds for _em_image_recording.average_exposure_time and _emd_image_recording.average_exposure_time + Add 'HOLD FOR 4 WEEKS' to enumeration pdbx_database_status.dep_release_code_struct_fact</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.292</td> <td class="my-monospace">2017-10-18</td> <td class="my-monospace"> Changes (ep/jmb): + Add _pdbx_depui_validation_status_flags.tls_no_aniso to flag TLS records without anisotropic ones during deposition + Add _pdbx_depui_validation_status_flags.adp_outliers_zero to flag zero B factors during deposition + Update _pdbx_audit_support.funding_organization enumeration + Add European XFEL site and beamlines to diffrn_source.type, diffrn_source.pdbx_synchrotron_beamline and diffrn_source.pdbx_synchrotron_site + pdbx_database_related.db_name deposition enumeration extended to include matching content_type context. + Add upper range limit for reflns.percent_possible_obs and reflns_shell.percent_possible_obs + Require reflns.pdbx_R_split and reflns_shell.pdbx_R_split to be positive and create advisory limits for deposition. + Add 'LIQUID ANODE' to Deposition enumeration for diffrn_source.source. Change METALJET generators in diffrn_source.type to match. + Extend enumeration for pdbx_struct_assembly_auth_evidence.experimental_support</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.291</td> <td class="my-monospace">2017-09-10</td> <td class="my-monospace"> Changes (ep): + Add 'RMVD' to enumeration for pdbx_database_status.status_code, pdbx_database_status.status_code_sf, pdbx_database_status.status_code_mr, pdbx_database_status.status_code_cs + Add enumeration for emd_grid.model and em_sample_support.grid_type + Add enumeration for em_imaging_optics.energyfilter_name and emd_specialist_optics.energyfilter_name + Correct capitalization of BRUKER METALJET in diffrn_source.type + Add entity_branch_extension to dictionary (adds pdbx_entity_branch_link, pdbx_entity_branch_list and adds to entity.type)</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.290</td> <td class="my-monospace">2017-08-30</td> <td class="my-monospace"> Changes (ep): + Add 'FISCHIONE INSTRUMENTS DUAL AXIS TOMOGRAPHY HOLDER' to emd_microscopy.specimen_holder_model and em_imaging.specimen_holder_model enumerations + Add soft and hard limits for reflns.pdbx_Rrim_I_all, reflns_shell.pdbx_Rrim_I_all, reflns.pdbx_Rpim_I_all, reflns_shell.pdbx_Rpim_I_all, reflns_shell.pdbx_Rrim_I_all_anomalous, reflns_shell.pdbx_Rpim_I_all_anomalous, reflns.pdbx_Rrim_I_all_anomalous, reflns.pdbx_Rpim_I_all_anomalous + Add DepUI enumeration for em_software.name and emd_software.name + Make pdbx_struct_assembly_auth_evidence.details and pdbx_struct_assembly_depositor_info.details mandatory at deposition + Update enumeration for _pdbx_audit_support.funding_organization + Add _pdbx_deposit_group.group_type + Remove ESRF BEAMLINE ID30A from diffrn_source.type + Update software.name enumeration with role software used (for deposition)</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.289</td> <td class="my-monospace">2017-08-03</td> <td class="my-monospace"> Changes (ep): + Reintegrate duplicate save frames + Add 'PDB_ACC' to database_2.database_id enumeration + Correct type for pdbx_nmr_exptl_sample.concentration_units to match enumeration + Add MCMR (Midwest Center for Macromolecular Research) to pdbx_SG_project.initial_of_center and pdbx_SG_project.full_name_of_center</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.288</td> <td class="my-monospace">2017-07-17</td> <td class="my-monospace"> Changes (Pdbx/mmCIF Working Group): + replace items names d_resolution_* with d_limit_* and update related definitions. + add item _pdbx_diffrn_merge_rejected_list.details + add items _pdbx_diffrn_merge_image_list.image_id_begin and _pdbx_diffrn_merge_image_list.image_id_end + add items _pdbx_diffrn_unmerged_cell.Bravais_lattice + add items _pdbx_diffrn_unmerged_refln.scan_id and _pdbx_diffrn_unmerged_refln.scale_value + add category pdbx_diffrn_scan</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.287</td> <td class="my-monospace">2017-07-16</td> <td class="my-monospace"> Changes (jw/ns): + Correct enumeration in _pdbx_diffrn_data_section_contents.content_type + Changed _pdbx_xfel_data_reduction.frames_hits to _pdbx_xfel_data_reduction.frame_hits. + Add _pdbx_xfel_data_reduction.crystal_hits, _pdbx_xfel_data_reduction.droplet_hits, and _pdbx_xfel_data_reduction.lattices_indexed</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.286</td> <td class="my-monospace">2017-07-12</td> <td class="my-monospace"> Changes (jw): + _pdbx_diffrn_data_section.type_scaled correct enumeration + Remove range limits for _pdbx_diffrn_image_proc.phi_value + Rename _pdbx_xfel_sample_delivery_injection.type to _pdbx_xfel_sample_delivery_injection.description + Change type of _pdbx_xfel_detector.detector from 'code' to 'line'</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.285</td> <td class="my-monospace">2017-07-08</td> <td class="my-monospace"> Changes (ep): + Extend deposition enumeration for _pdbx_audit_support.funding_organization + For em_ related categories, set context based on public V50 + Add 'carbohydrate dihedral angle' to _pdbx_nmr_constraint_file.constraint_type + Extend soft limit range for em_image_recording.avg_electron_dose_per_image/ emd_image_recording.average_electron_dose_per_image + Set pdbx_depui_status_flags.is_grant_funded mandatory for deposition</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.284</td> <td class="my-monospace">2017-07-01</td> <td class="my-monospace"> Changes (ep): + Add pdbx_depui_status_flags.use_sas_refine + Extend deposition enumeration of software.name</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.283</td> <td class="my-monospace">2017-06-27</td> <td class="my-monospace"> Changes (ep): + Change type for pdbx_database_status.recvd_initial_deposition_date to yyyy-mm-dd from yyyy-mm-dd:hh:mm for xsd type checking + Add 'FEI FALCON III (4k x 4k)' to enumeration for em/emd_image_recording.film_or_detector_model + Correct type of source for deposition for 'Xenocs GeniX 3D Cu HF' in diffrn_source.type enumeration</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.282</td> <td class="my-monospace">2017-06-19</td> <td class="my-monospace"> Changes (ep): + Add depositon specific open enumeration for _pdbx_audit_support.funding_organization</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.281</td> <td class="my-monospace">2017-05-29</td> <td class="my-monospace"> Changes (ep): + Add depositon specific enumerations for diffrn_detector.pdbx_collection_date and entity_poly.pdbx_seq_one_letter_code. + Make pdbx_depui_status_flags.has_viewed_validation_report mandatory for deposition + Add pdbx_contact_author.legacy_address to replace audit_contact_author.address. + Correct enumerations for deposition _diffrn_source.pdbx_synchrotron_site (MAX II, MAX IV) + Add beamlines 'PAL/PLS BEAMLINE 6D', 'ILL BEAMLINE LADI', 'ILL BEAMLINE LADI III' to deposition diffrn_source.type</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.280</td> <td class="my-monospace">2017-05-18</td> <td class="my-monospace"> Changes (ep): + Add pdbx_supporting_exp_data_set category + Add _pdbx_depui_status_flags.has_sas_data and _pdbx_depui_status_flags.is_sas_deposited + Add NSLS-II and MAX_IV synchrotrons to deposition enumeration lists + Extend software.name enumeration list for deposition system. + Add BIOISIS to pdbx_database_release.db_name enumeration list. + Add regular expression for author names (audit_author.name, citation_author.name) for deposition system + Make deposition taxonomy mandatory (_entity_src_nat.pdbx_ncbi_taxonomy_id, _pdbx_entity_src_syn.ncbi_taxonomy_id, _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id, _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id) + Add detector types and scattering types to deposition enumerations for diffrn_detector.type and diffrn_source.source</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.279</td> <td class="my-monospace">2017-04-20</td> <td class="my-monospace"> Changes (ep): + Add 'Data processing' to _pdbx_audit_revision_group.group enumeration + Add 'Obsolete' to _pdbx_audit_revision_details.type + Change enumeration in _emd_map.endian_type and _em_map.endian_type from 'small' to 'little'</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.278</td> <td class="my-monospace">2017-04-18</td> <td class="my-monospace"> Changes (ep): + Add WWPDB_LOCAL context for entry.pdbx_DOI + Add 'Direct Drive' to _pdbx_nmr_spectrometer.model deposition enumeration + For v50: Mark as WWPDB_LOCAL context for database_PDB_rev and database_PDB_rev_record</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.277</td> <td class="my-monospace">2017-04-08</td> <td class="my-monospace"> Changes (ep): + For v50: correct WWPDB_LOCAL context for _pdbx_database_status.date_begin_release_preparation, and remove context for _pdbx_database_status.status_code_cs</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.276</td> <td class="my-monospace">2017-04-06</td> <td class="my-monospace"> Changes (ep/mrs): + Correct capitalization of enumerations in pdbx_contact_author.contry and pdbx_audit_support.country. + Correct capitalization of enumerations of _ pdbx_SG_project.full_name_of_center + Update archive enumerations for pdbx_nmr_exptl_sample.concentration_units to match deposition enumeration + For deprecated em_* categories, in which a forward reference is provided to new item in dictonary, provide the reverse mapping as well. + For v5rc: For deprecated computing category provide forward references to software category + For v5rc: export _pdbx_database_status.recvd_initial_deposition_date and indicate replaces database_PDB_rev.date_original + For v5rc: remove pdbx_binding_assay category + Extend enumeration for _pdbx_nmr_constraint_file.constraint_subtype ('PRE', 'PRE solvent', 'CSP') + For v5rc: For deprecated pdbx_version category provide replacement items names</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.275</td> <td class="my-monospace">2017-03-28</td> <td class="my-monospace"> Changes (ep/mg): + Move 'Bruker METLJET' from diffrn_detector.type enumeration to diffrn_source.type + Change 'SSRF BEAMLINE BL17U' ine diffrn_source.type enumerate to 'SSRF BEAMLINE BL17U1' + Add 'Agrovata', 'DIMPLE', 'SHELXL-97' to software.name deposition enumeration</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.274</td> <td class="my-monospace">2017-03-20</td> <td class="my-monospace"> Changes (ep): + For v5rc: Remove category context for database_PDB_rev and database_PDB_rev_record + Add 'Force Field X' to deposition enumeration for software.name</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.273</td> <td class="my-monospace">2017-03-20</td> <td class="my-monospace"> Changes (ep): + For v5rc: Set category context to WWPDB_LOCAL for computing + For v5rc: Remove context on the following due to existing data in archive _atom_site.Cartn_x_esd, _atom_site.Cartn_y_esd, _atom_site.Cartn_z_esd, _atom_site.occupancy_esd, _atom_site.B_iso_or_equiv_esd, _atom_site_anisotrop.U[1][1]_esd, _atom_site_anisotrop.U[2][2]_esd, _atom_site_anisotrop.U[3][3]_esd, _atom_site_anisotrop.U[1][2]_esd, _atom_site_anisotrop.U[1][3]_esd, _atom_site_anisotrop.U[2][3]_esd + Add 'Bruker METALJET' to _diffrn_detector.type enumeration + Flag _pdbx_audit_revision_details.type as mandatory for deposition. + Add _pdbx_crystal_alignment.ybeam_esd + Make _refine_B_iso.pdbx_residue_num, _refine_B_iso.pdbx_strand, _refine_B_iso.pdbx_residue_name non-mandatory + Correct examples for pdbx_audit_revision_history and pdbx_audit_revision_group + Update enumeration for _pdbx_audit_revision_group.group + Create/update examples for emd_molecular_mass, emd_vitrification, emd_angle_assignment, emd_particle, emd_volume, emd_modelling_initial_model</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.272</td> <td class="my-monospace">2017-03-14</td> <td class="my-monospace"> Changes (ep): + For v5rc: Set category context to WWPDB_LOCAL for pdbx_version, database_PDB_rev and database_PDB_rev_record + Add ssbond to enumeration for pdbx_data_processing_status.status + Set WWPDB_LOCAL context for em_2d_crystal_entity.c_sampling_length in v5_next but not v5rc.</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.271</td> <td class="my-monospace">2017-03-09</td> <td class="my-monospace"> Changes (ep): + Add category group assignments for pdbx_unobs_or_zero_occ_residues, pdbx_unobs_or_zero_occ_atoms, pdbx_struct_mod_residue, pdbx_distant_solvent_atoms, _pdbx_struct_special_symmetry, pdbx_pdb_compnd, pdbx_pdb_source + Update context values to WWPDB_LOCAL for pdbx_remediation_atom_site_mapping + Parent for _pdbx_remediation_atom_site_mapping.auth_alt_id removed. + Add MIRAS, SIR to deposition enumeration for _refine.pdbx_method_to_determine_struct + Change type for pdbx_hybrid.residue_names to line based on usage + Add category keys for pdbx_source and pdbx_refine_ls_restr_ncs + To support data from pdb_extract, added pdbx_crystal_alignment category and updates to exisitin pdbx_phasing_MR, reflns_shell, reflns categories + For 4x3 matrix - require space between columns + Add new categories to support versioning: pdbx_audit_revision_history, pdbx_audit_revision_category, pdbx_audit_revision_group, pdbx_audit_revision_item, pdbx_audit_revision_details + For v5rc: Set item context on the following to WWPDB_LOCAL: _atom_site.Cartn_x_esd, _atom_site.Cartn_y_esd, _atom_site.Cartn_z_esd, _atom_site.occupancy_esd, _atom_site.B_iso_or_equiv_esd, _atom_site_anisotrop.U[1][1]_esd, _atom_site_anisotrop.U[2][2]_esd, _atom_site_anisotrop.U[3][3]_esd, _atom_site_anisotrop.U[1][2]_esd, _atom_site_anisotrop.U[1][3]_esd, _atom_site_anisotrop.U[2][3]_esd</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.270</td> <td class="my-monospace">2017-03-01</td> <td class="my-monospace"> Changes (ep): + Update pdbx_struct_assembly_auth_evidence_depositor_info.experimental_support enumeration to include 'immunoprecipitation'</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.269</td> <td class="my-monospace">2017-02-27</td> <td class="my-monospace"> Changes (ep): + Add STARANISO to deposition software.name enumeration list + Add NSRRC BEAMLINE TPS 05A synchrotron beamline to diffrn.source.type + Update deposition example for refins.pdbx_starting_model + Add "MAATEL BIODIFF" to diffrn_detector.type + Update pdbx_struct_assembly_auth_evidence.experimental_support enumeration to include 'immunoprecipitation'</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.268</td> <td class="my-monospace">2017-02-17</td> <td class="my-monospace"> Changes (ep): + Add internal pdbx_binding_assay.auth_comp_id + Provide limits for pdbx_binding_assay.assay_pH and pdbx_binding_assay.assay_temperature + Make pdbx_binding_assay.assay_type, pdbx_binding_assay.assay_value and pdbx_binding_assay.assay_value_type non-mandatory</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.267</td> <td class="my-monospace">2017-02-15</td> <td class="my-monospace"> Changes (ep): + Export pdbx_entity_instance_feature to public in v5rc + For pdbx_entity_instance_feature.comp_id change parent to atom_site.label_comp_id + Add parent atom_site.auth_comp_id to pdbx_entity_instance_feature.auth_comp_id</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.266</td> <td class="my-monospace">2017-02-11</td> <td class="my-monospace"> Changes (ep): + For 4x3_matrix - allow spaces at start of row + add pdbx_struct_assembly_auth_evidence_depositor_info. Change parent of pdbx_struct_assembly_gen_depositor_info to pdbx_struct_assembly_depositor_info + export pdbx_binding_assay to public in v5rc</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.265</td> <td class="my-monospace">2017-02-05</td> <td class="my-monospace"> Changes (ep): + Add BRUKER TURBO X-RAY SOURCE and OXFORD DIFFRACTION NOVA to list of X-ray sources for deposition system. + Define 4x3_matrix, id_list, symmetry_operation as regular expressions for use in deposition system to validate pdbx_struct_assembly_gen_depositor_info + Add pdbx_struct_assembly_gen_depositor_info.symmetry_operation</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.264</td> <td class="my-monospace">2017-01-05</td> <td class="my-monospace"> Changes (ep/M. Hekkelman): + Change _pdbx_struct_assembly_gen_depositor_info.chain_id_list non-mandatory + Correct inconsistent mandatory setting for _atom_site.label_alt_id, _atom_site.label_comp_id, _atom_site.label_atom_id, _diffrn_refln.wavelength_id, _atom_site.label_entity_id, _atom_site.label_seq_id, _refln.wavelength_id, _atom_site.label_asym_id, _struct_conn.ptnr1_label_atom_id, _struct_conn.ptnr2_label_atom_id, _struct_mon_prot_cis.label_alt_id, _struct_site_gen.label_alt_id + Split up pdbx_struct_assembly_auth_evidence into pdbx_struct_assembly_auth_classification. Export categories to v5rc + Make _pdbx_struct_assembly_gen_depositor_info.chain_id_list, _pdbx_struct_assembly_gen_depositor_info.full_matrices, _pdbx_struct_assembly_gen_depositor_info.at_unit_matrix, non-mandatory for archive, but mandatory depui + Make pdbx_nmr_refine.software_ordinal a key for category internally + Add adamantane to _pdbx_nmr_chem_shift_ref.mol_common_name enumeration</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.263</td> <td class="my-monospace">2017-01-03</td> <td class="my-monospace"> Changes (jw/ep): + add units micrometres, micrometres_squared, teraphotons_per_pulse, kiloelectron_volts, microjoules, hertz, femtoseconds, microliters_per_min + add category group xfel_group + incorporate draft xfel dictionary extension + incorporate draft diffraction data extension and supporting category group + Add _pdbx_struct_assembly_gen_depositor_info.all_chains</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.262</td> <td class="my-monospace">2016-12-19</td> <td class="my-monospace"> Changes (ep/jb): + Update pdbx_struct_assembly_gen_depositor_info category for better support of assemblies. + Add pdbx_entity_instance_feature.auth_seq_num and auth_comp_id + Add DECTRIS EIGER X 500K to diffrn_detector.type + Add "FRM II BEAMLINE BIODIFF" to diffrn_source.type + Remove context for audit_author.identifier_ORCID + Item context added for audit_author.address</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.261</td> <td class="my-monospace">2016-12-06</td> <td class="my-monospace"> Changes (ep/esg/cl): + Allow 0.0 in range for emd_crystallography_stats.overall_phase_error + emd_recombinant_expression.plasmid: make non-mandatory + Reclassify the category_group for em_ categories + Add pdbx_biocurator_comment and pdbx_depositor_comment</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.260</td> <td class="my-monospace">2016-11-30</td> <td class="my-monospace"> Changes (jdw): + Add item _audit_author.identifier_ORCID + Add category pdbx_entity_instance_feature</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.259</td> <td class="my-monospace">2016-11-30</td> <td class="my-monospace"> Changes (ep): + Allow 0.0 in range for em_diffraction_stats.overall_phase_error + _em_entity_assembly_recombinant.plasmid: make non-mandatory + Flag _em_helical_entity, em_helical_entity.hand, _em_single_particle_entity, _em_virus_entity.ictvdb_id, as deprecated in V5RC and provide forward reference possible.</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.258</td> <td class="my-monospace">2016-11-29</td> <td class="my-monospace"> Changes (ep): + Add missing detectors to em_image_recording.file_or_detector_model + Add HITACHI EF3000 to em_imaging.microscope_model + For deprecated em_* categories, change context to WWPDB_DEPRECATED and provide mapping to replacement</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.257</td> <td class="my-monospace">2016-11-22</td> <td class="my-monospace"> Changes (ep): + struct_keywords.pdbx_keywords add documented enumerations + pdbx_released_exp_data_set.data_set_type add EMPIAR + diffrn_detector.type: Add Bruker PHOTON II, TVIPS TEMCAM-F416 + diffrn_source.type add Excillum MetalJet sealed tube generators + pdbx_data_processing_status.task_name: update examples and provide annotation enumeration + make pdbx_nmr_refine.software_ordinal a key for category + em_entity_assembly_molwt: Make units and value non-mandatory</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.256</td> <td class="my-monospace">2016-10-18</td> <td class="my-monospace"> Changes (ep): + em_vitrification.instrument add ZEISS PLUNGE FREEZER CRYOBOX + Add em_3d_reconstruction/emd_final_reconstruction refinement_type attribute to replace fsc_type. + _emd_admin.hold_expiry_date renamed _emd_admin.map_hold_date</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.255</td> <td class="my-monospace">2016-09-28</td> <td class="my-monospace"> Changes (ep): + Add range limits for reflns.pdbx_CC_half and reflns_shell.pdbx_CC_half + Add pdbx_deposit_group.group_title and pdbx_deposit_group.group_description + emd_microscopy.microscope add FEI/PHILIPS CM10 + em_imaging.microscope_model add FEI/PHILIPS CM10, JEOL 100B, SIEMENS SULEIKA + Enhanced EM extension dictionary + Add_ndb_struct_na_base_pair.propel as alias for _ndb_struct_na_base_pair.propeller</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.254</td> <td class="my-monospace">2016-09-19</td> <td class="my-monospace"> Changes (ep): + Extend enumeration for pdbx_nmr_chem_shift_ref.mol_common_name to include 'methionine' and 'deuterium oxide' + Add SLAC sector MFX + Correct example for pdbx_reference_linked_entity_link + Enhanced EM extension dictionary</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.253</td> <td class="my-monospace">2016-08-26</td> <td class="my-monospace"> Changes (ep): + Add enumeration for emd_map.contour_level_source and em_map.contour_level_source</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.252</td> <td class="my-monospace">2016-07-27</td> <td class="my-monospace"> Changes (ep): + emd_virus_shell.triangulation and _em_virus_shell.triangulation, changle value to positive integer + Add DECTRIS PILATUS3 R CdTe detectors to diffrn_detector.type</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.251</td> <td class="my-monospace">2016-07-05</td> <td class="my-monospace"> Changes (ep): + Change description of reflns.pdbx_CC_half and reflns_shell.pdbx_CC_half to refer to a decimal value. + Remove local context for _pdbx_deposit_group.group_id + Update enumerations for _pdbx_nmr_chem_shift_ref.atom_group and _pdbx_nmr_exptl_sample_conditions.pH_units + Description updates to several emd related categories + Deposition updates to BRUKER IMUS MICROFOCUS source and RAYONIX MX225-HS/MX170-HS detectors + Range limits for reflns.pdbx_CC_half + _pdbx_item_linked_group and _pdbx_item_linked_group_list updates for pdbx_chem_comp_model_*, em_*, emd_* and_pdbx_struct_special_symmetry categories</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.250</td> <td class="my-monospace">2016-06-04</td> <td class="my-monospace"> Changes (ep): + Reduce _pdbx_nmr_exptl_sample_conditions.temperature_units enumeration for deposition system + Add deposition system enumeration _diffrn_detector.type with numerous DECTRIS detectors + Update examples for: _em_author_list _em_depui _em_grid_pretreatment _em_diffraction _em_diffraction_shell _em_diffraction_stats _em_final_classification _em_euler_angle_assignment _em_ctf_correction _em_image_processing _em_fsc_curve _emd_microscopy _emd_image_recording _pdbx_deposit_group_index _pdbx_entity_src_gen_depositor_info + Create parent/child definitions for: _em_imaging.specimen_id _em_image_scans.image_recording_id _em_3d_reconstruction.image_processing_id _em_diffraction_stats.image_processing_id _em_image_recording.imaging_id _em_final_classification.image_processing_id _em_startup_model.image_processing_id _em_euler_angle_assignment.image_processing_id _em_ctf_correction.image_processing_id _em_volume_selection.image_processing_id _em_image_processing.image_recording.id _emd_microscopy.emd_specimen_id _emd_image_recording.emd_microscopy_id _emd_image_digitization.emd_image_recording_id' _emd_image_processing.emd_image_recording_id' _emd_startup_model.emd_image_processing_id _emd_angle_assignment.emd_image_processing_id _emd_final_reconstruction.emd_image_processing_id _emd_final_classification.emd_image_processing_id _emd_particle_selection.emd_image_processing_id _emd_volume_selection.emd_image_processing_id _emd_ctf_correction.emd_image_processing_id _emd_crystallography_stats.emd_image_processing_id</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.249</td> <td class="my-monospace">2016-05-24</td> <td class="my-monospace"> Changes (ep): + deposition _software.name enumerations updated (CRANK, CRANK2, EVAL15, KYLIN) + Add AichiSR synchrotron and beamline BL2S1 to deposiiton diffrn_source + Add 'dipolar recoupling' and 'spin diffusion' to _pdbx_nmr_constraint_file.constraint_subtype + Add DECTRIS PILATUS3 R 300K detector + Update examples to include correct items: _pdbx_audit_conform_extension _pdbx_chem_comp_depositor_info _pdbx_chem_comp_instance_depositor_info _pdbx_depui_upload _pdbx_deposition_message_info _pdbx_deposition_message_file_reference _pdbx_struct_ref_seq_depositor_info _em_db_reference _em_entity_assembly_molwt _em_entity_assembly_naturalsource _em_image_recording _em_interpret_figure _em_structure_factors_depositor_info _em_volume_selection _em_particle_selection _em_mask_depositor_info _pdbx_struct_special_symmetry _pdbx_reference_publication_list _pdbx_nmr_chem_shift_ref _pdbx_nmr_chem_shift_reference _pdbx_reference_entity_poly_link</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.248</td> <td class="my-monospace">2016-05-03</td> <td class="my-monospace"> Changes (ep): + CAPRI added to _pdbx_database_status.methods_development_category + Correct pdbx_nmr_chem_shift_ref.mol_common_name enumeration + Add RDC to pdbx_nmr_constraint_file.constraint_subtype enumeration + Correct limits of em_3d_crystal_entity.space_group_num + EMD updates to status (HOLD8W), remove 'JEM3400FSC CRYOHOLDER', add new microscopes</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.247</td> <td class="my-monospace">2016-04-27</td> <td class="my-monospace"> Changes (ep): + deposition beamline enumeration updates + add extensions to support pdbx_struct_assembly evidence</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.246</td> <td class="my-monospace">2016-04-11</td> <td class="my-monospace"> Changes (ep): + deposition beamline enumeration updates</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.245</td> <td class="my-monospace">2016-04-02</td> <td class="my-monospace"> Changes (PDBj): + _diffrn_source.type/_diffrn_source.pdbx_synchrotron_beamline deposition enumeration update BL-21 -> PX-BL21</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.244</td> <td class="my-monospace">2016-03-31</td> <td class="my-monospace"> Changes (jw): + add extensions to capture results from ligand binding assays</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.243</td> <td class="my-monospace">2016-03-25</td> <td class="my-monospace"> Changes (jy,zf): + add extensions for group depositions</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.242</td> <td class="my-monospace">2016-03-21</td> <td class="my-monospace"> Changes (jw): + add regular expression for ORCID</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.241</td> <td class="my-monospace">2016-03-08</td> <td class="my-monospace"> Changes (ep): + Update local context for selected em_* categories. + Update internal enumerations for detectors and secondary structure types.</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.240</td> <td class="my-monospace">2016-02-24</td> <td class="my-monospace"> Changes (cl,ep): + Update local context for selected em_* categories. + Add internal data item _pdbx_database_status.auth_req_rel_date</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.239</td> <td class="my-monospace">2016-02-09</td> <td class="my-monospace"> Changes (cl,ap): + enumeration update for item _em_imaging.specimen_holder_model and _emd_microscopy.specimen_holder_model + set local context for categories em_virus_natural_host and em_virus_shell</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.238</td> <td class="my-monospace">2016-02-03</td> <td class="my-monospace"> Changes (jy): + enumeration update for item _pdbx_database_status.methods_development_category</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.237</td> <td class="my-monospace">2016-02-01</td> <td class="my-monospace"> Changes (es): + update enumerations and descriptions for EMD data items -</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.236</td> <td class="my-monospace">2016-01-26</td> <td class="my-monospace"> Changes (cl,ep): + update enumerations and descriptions for EM data items -</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.235</td> <td class="my-monospace">2016-01-21</td> <td class="my-monospace"> Changes (jw): + update context for EM data items - + add _em_admin.map_hold_date</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.234</td> <td class="my-monospace">2016-01-06</td> <td class="my-monospace"> Changes (ep): + description text updates</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.233</td> <td class="my-monospace">2015-12-08</td> <td class="my-monospace"> Changes (cl,ep): + EM extension update</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.232</td> <td class="my-monospace">2015-12-07</td> <td class="my-monospace"> Changes (ep): + enumeration updates</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.231</td> <td class="my-monospace">2015-12-04</td> <td class="my-monospace"> Changes (cl): + EM extension update</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.230</td> <td class="my-monospace">2015-12-03</td> <td class="my-monospace"> Changes (es): + EMD extension update</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.229</td> <td class="my-monospace">2015-12-03</td> <td class="my-monospace"> Changes (jdw): + Category context changed for pdbx_nmr_spectral_peak_list</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.228</td> <td class="my-monospace">2015-11-28</td> <td class="my-monospace"> Changes (es): + EMD extension update</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.227</td> <td class="my-monospace">2015-11-24</td> <td class="my-monospace"> Changes (ep): + DCC extension update</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.226</td> <td class="my-monospace">2015-11-24</td> <td class="my-monospace"> Changes (cl): + EM extension update</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.225</td> <td class="my-monospace">2015-11-24</td> <td class="my-monospace"> Changes (es): + EMD extension update</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.224</td> <td class="my-monospace">2015-11-19</td> <td class="my-monospace"> Changes (es): + EMD extension update</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.223</td> <td class="my-monospace">2015-11-11</td> <td class="my-monospace"> Changes (jw): + Adjust local context for selected NMR and EM data categories.</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.222</td> <td class="my-monospace">2015-11-11</td> <td class="my-monospace"> Changes (es): + EMD extension update</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.221</td> <td class="my-monospace">2015-11-02</td> <td class="my-monospace"> Changes (ep): + Enumeration updates</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.220</td> <td class="my-monospace">2015-10-30</td> <td class="my-monospace"> Changes (ep): + Enumeration updates</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.219</td> <td class="my-monospace">2015-10-22</td> <td class="my-monospace"> Changes (cl): + EM extension update</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.218</td> <td class="my-monospace">2015-10-22</td> <td class="my-monospace"> Changes (es): + EMD extension update</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.217</td> <td class="my-monospace">2015-10-15</td> <td class="my-monospace"> Changes (jw): + add item _pdbx_depui_entry_details.wwpdb_site_id</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.216</td> <td class="my-monospace">2015-10-14</td> <td class="my-monospace"> Changes (cl): + Add _emd_admin.header_release_date, _emd_admin.obsoleted_date and _em_admin.header_release_date</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.215</td> <td class="my-monospace">2015-10-13</td> <td class="my-monospace"> Changes (es): + EMD extension update</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.214</td> <td class="my-monospace">2015-10-08</td> <td class="my-monospace"> Changes (ep): + Enumeration updates + regex update for type author</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.213</td> <td class="my-monospace">2015-10-01</td> <td class="my-monospace"> Changes (jdw): + _pdbx_nmr_systematic_chem_shift_offset.ordinal replaces the natural category key for this category. + Enumeration updates</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.212</td> <td class="my-monospace">2015-09-08</td> <td class="my-monospace"> Changes (cl): + EM extension update</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.211</td> <td class="my-monospace">2015-09-08</td> <td class="my-monospace"> Changes (es): + EMD extension update</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.210</td> <td class="my-monospace">2015-08-31</td> <td class="my-monospace"> Changes (cl,jw): + EM extension update</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.209</td> <td class="my-monospace">2015-08-30</td> <td class="my-monospace"> Changes (ep,jw): + Enumeration updates</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.208</td> <td class="my-monospace">2015-08-14</td> <td class="my-monospace"> Changes (cl,jw): + EM extension update</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.207</td> <td class="my-monospace">2015-08-06</td> <td class="my-monospace"> Changes (ep,jw): + enumeration updates</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.206</td> <td class="my-monospace">2015-07-20</td> <td class="my-monospace"> Changes (jw): + add new category pdbx_audit_conform_extension</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.205</td> <td class="my-monospace">2015-07-17</td> <td class="my-monospace"> Changes (ep,jw): + enumeration updates</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.204</td> <td class="my-monospace">2015-07-06</td> <td class="my-monospace"> Changes (es,cl): + EMD data type refinement</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.203</td> <td class="my-monospace">2015-06-30</td> <td class="my-monospace"> Changes (es): + EMD data type refinement</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.202</td> <td class="my-monospace">2015-06-26</td> <td class="my-monospace"> Changes (es): + EMD regular expression update</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.201</td> <td class="my-monospace">2015-06-24</td> <td class="my-monospace"> Changes (es): + EMD extension update</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.200</td> <td class="my-monospace">2015-06-19</td> <td class="my-monospace"> Changes (cl): + EMD extension update</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.199</td> <td class="my-monospace">2015-06-09</td> <td class="my-monospace"> Changes (cl): + EMD extension update</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.198</td> <td class="my-monospace">2015-06-03</td> <td class="my-monospace"> Changes (es,cl,jdw): + EMD extension update</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.197</td> <td class="my-monospace">2015-05-06</td> <td class="my-monospace"> Changes (ep,ms,jdw): + enumeration updates</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.196</td> <td class="my-monospace">2015-04-30</td> <td class="my-monospace"> Changes (ep,jdw): + enumeration updates</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.195</td> <td class="my-monospace">2015-04-28</td> <td class="my-monospace"> Changes (es,jdw): + EMD extension dictionary update</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.194</td> <td class="my-monospace">2015-04-22</td> <td class="my-monospace"> Changes (ep,jdw): + enumeration updates + add item _pdbx_contact_author.identifier_ORCID. + add chem_comp_model_group extensions.</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.193</td> <td class="my-monospace">2015-03-31</td> <td class="my-monospace"> Changes (cs,jdw): + remove relationship between _pdbx_reference_entity_subcomponents.prd_id and _pdbx_reference_molecule_list.prd_id</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.192</td> <td class="my-monospace">2015-03-18</td> <td class="my-monospace"> Changes (ep,jdw): + Add item _pdbx_depui_entry_details.replace_pdb_id + Enumeration updates</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.191</td> <td class="my-monospace">2015-03-10</td> <td class="my-monospace"> Changes (es,jdw): + EMD extension dictionary update</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.190</td> <td class="my-monospace">2015-02-28</td> <td class="my-monospace"> Changes (ep,jdw): + Enumeration updates - + removed _pdbx_poly_seq_scheme.hetero relationship with _entity_poly_seq.hetero</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.189</td> <td class="my-monospace">2015-02-20</td> <td class="my-monospace"> Changes (es,ep,jdw): + EMD extension dictionary update + Enumeration updates</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.188</td> <td class="my-monospace">2015-02-10</td> <td class="my-monospace"> Changes (es,jdw): + EMD extension dictionary update</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.187</td> <td class="my-monospace">2015-02-03</td> <td class="my-monospace"> Changes (es,cl,jdw): + EMD extension dictionary update</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.186</td> <td class="my-monospace">2015-02-01</td> <td class="my-monospace"> Changes (zf,jdw): + NMR updates for deposition system</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.185</td> <td class="my-monospace">2014-12-17</td> <td class="my-monospace"> Changes (ag,ep,jdw): + NMR updates for deposition system</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.184</td> <td class="my-monospace">2014-12-02</td> <td class="my-monospace"> Changes (es,jdw): + EMD extension dictionary update</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.183</td> <td class="my-monospace">2014-11-21</td> <td class="my-monospace"> Changes (es,cl,jdw): + EMD extension dictionary update</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.182</td> <td class="my-monospace">2014-11-07</td> <td class="my-monospace"> Changes (ag,ez,jdw): + NMR updates for deposition system -</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.181</td> <td class="my-monospace">2014-10-28</td> <td class="my-monospace"> Changes (ag,ez,jdw): + NMR updates for deposition system -</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.180</td> <td class="my-monospace">2014-10-21</td> <td class="my-monospace"> Changes (es,cl,jdw): + EMD dictionary update - make all categories optional --</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.179</td> <td class="my-monospace">2014-10-20</td> <td class="my-monospace"> Changes (es,cl,jdw): + EMD dictionary update</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.178</td> <td class="my-monospace">2014-10-14</td> <td class="my-monospace"> Changes (ep,jdw): + update enumerations for deposition system.</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.177</td> <td class="my-monospace">2014-09-25</td> <td class="my-monospace"> Changes (ep,jdw): + update detector enumerations for deposition system.</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.176</td> <td class="my-monospace">2014-09-11</td> <td class="my-monospace"> Changes (to,jdw): + add _pdbx_depui_validation_status_flags.residual_B_factors_flag</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.175</td> <td class="my-monospace">2014-09-10</td> <td class="my-monospace"> Changes (ep,jdw): + update of NMR alternative mandatory codes and examples</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.174</td> <td class="my-monospace">2014-09-02</td> <td class="my-monospace"> Changes (cl,ep,jdw): + update of EM extensions definitions, examples and enumerations</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.173</td> <td class="my-monospace">2014-08-28</td> <td class="my-monospace"> Changes (cl,jdw): + update of EM extensions definitions, examples and enumerations</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.172</td> <td class="my-monospace">2014-07-30</td> <td class="my-monospace"> Changes (cl,jdw): + update of EM extensions definitions, examples and enumerations</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.171</td> <td class="my-monospace">2014-07-21</td> <td class="my-monospace"> Changes (jdw): + _pdbx_depui_status_flags.has_viewed_validation_report made optional</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.170</td> <td class="my-monospace">2014-07-17</td> <td class="my-monospace"> Changes (cl,ep,jdw): + update of enumerations for 3DEM and other deposition forms.</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.169</td> <td class="my-monospace">2014-07-16</td> <td class="my-monospace"> Changes (ep,jdw): + update of enumerations for deposition forms.</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.168</td> <td class="my-monospace">2014-07-10</td> <td class="my-monospace"> Changes (cl,ep,jdw): + update of EM extensions definitions, examples and enumerations + update of enumerations for deposition forms.</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.167</td> <td class="my-monospace">2014-06-15</td> <td class="my-monospace"> Changes (jdw): + added _pdbx_depui_status_flags.validated_model_file_name, _pdbx_depui_status_flags.merge_prior_model_file_name, _pdbx_depui_status_flags.merge_replace_model_file_name, _pdbx_depui_status_flags.merge_output_model_file_name + Corrected/removed item-linked relation to _struct_ref_seq_dif.db_mon_id. + Updated _refine.pdbx_method_to_determine_structure + Update examples in category pdbx_data_processing_status</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.166</td> <td class="my-monospace">2014-06-06</td> <td class="my-monospace"> Changes (jdw): + Add item _pdbx_struct_conn_angle.ptnr3_symmetry + Add category pdbx_database_status_history</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.165</td> <td class="my-monospace">2014-06-05</td> <td class="my-monospace"> Changes (cl/jdw): + Update em extensions and add deposition specific em categories - + Add save__pdbx_depui_status_flags.has_viewed_validation_report</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.164</td> <td class="my-monospace">2014-06-03</td> <td class="my-monospace"> Changes (jdw): + Update mandatory codes in category pdbx_database_status</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.163</td> <td class="my-monospace">2014-05-30</td> <td class="my-monospace"> Changes (jdw): + remove redundant mandatory code for _pdbx_database_status.data_hold_nmr_contraints</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.162</td> <td class="my-monospace">2014-05-08</td> <td class="my-monospace"> Changes (ep/jdw): + update enumerations in category software</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.161</td> <td class="my-monospace">2014-05-07</td> <td class="my-monospace"> Changes (jdw): + update enumerations in category pdbx_SG_project</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.160</td> <td class="my-monospace">2014-05-02</td> <td class="my-monospace"> Changes (jdw): + Items _entity_src_gen.pdbx_src_id, _entity_src_nat.pdbx_src_id _pdbx_entity_src_syn.pdbx_src_id added to category key and set to mandatory code = yes. + Update internal enumerations for deposition system.</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.159</td> <td class="my-monospace">2014-04-10</td> <td class="my-monospace"> Changes (cl/jdw): + Update in EM extension dictionary in support of new deposition system.</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.158</td> <td class="my-monospace">2014-04-03</td> <td class="my-monospace"> Changes (jdw): + Make context for _entity_poly.pdbx_explicit_linking_flag local. + extend enumeration for _pdbx_contact_author.id.</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.157</td> <td class="my-monospace">2014-03-28</td> <td class="my-monospace"> Changes (ep/jdw): + Update internal enumerations and boundary values for deposition system -</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.156</td> <td class="my-monospace">2014-03-24</td> <td class="my-monospace"> Changes (ep/jdw): + Update detector enumerations</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.155</td> <td class="my-monospace">2014-03-12</td> <td class="my-monospace"> Changes (hy/jdw): + Add preliminary items for _reflns.pdbx_CC_half,_reflns.pdbx_R_split,_reflns_shell.pdbx_CC_half and _reflns_shell.pdbx_R_split.</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.154</td> <td class="my-monospace">2014-03-10</td> <td class="my-monospace"> Changes (ag/eu/jdw): + Update deposition closed enumeration flags for NMR extension definitions.</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.153</td> <td class="my-monospace">2014-03-07</td> <td class="my-monospace"> Changes (eu/jdw): + add item _pdbx_nmr_refine.software_ordinal + update enumeration for _pdbx_database_status.dep_release_code_struct_fact</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.152</td> <td class="my-monospace">2014-03-04</td> <td class="my-monospace"> Changes (ep/jdw): + change type of _pdbx_struct_assembly_depositor_info.oligomeric_count to line + update deposition specific enumerations in category software</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.151</td> <td class="my-monospace">2014-03-01</td> <td class="my-monospace"> Changes (ep/jdw): + update deposition specific enumerations in category pdbx_database_related</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.150</td> <td class="my-monospace">2014-02-25</td> <td class="my-monospace"> Changes (cl/ep/jdw): + update EM deposition specific metadata items.</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.149</td> <td class="my-monospace">2014-02-20</td> <td class="my-monospace"> Changes (jdw): + update deposition mandatory codes and enumerations.</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.148</td> <td class="my-monospace">2014-02-19</td> <td class="my-monospace"> Changes (jdw): + update regular expressions one-letter code sequences + add mandatory codes to pdbx_nmr_chem_shift_ref and pdbx_nmr_constraint_file</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.147</td> <td class="my-monospace">2014-02-18</td> <td class="my-monospace"> Changes (jdw): + update diffraction detector enumerations/</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.146</td> <td class="my-monospace">2014-02-11</td> <td class="my-monospace"> Changes (eu/jdw): + new items _pdbx_nmr_software.details,_pdbx_nmr_exptl_sample.concentration_err,_pdbx_nmr_spectrometer.name, _pdbx_nmr_assigned_chem_shift_list.conditions_label,_pdbx_nmr_spectral_dim.sweep_width_units, _pdbx_nmr_spectral_dim.center_frequency_offset,_pdbx_nmr_spectral_dim.under_sampling_type, _pdbx_nmr_chem_shift_software.software_label + updates for deposition enumerations and mandator codes for NMR extensions.</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.145</td> <td class="my-monospace">2014-02-10</td> <td class="my-monospace"> Changes (cl/jdw): + Update of enumerations for 3DEM extension dictionary. + Add categories pdbx_depui_entry_details and pdbx_data_processing_status. + Added definitions _atom_type.pdbx_scat_Cromer_Mann_a5,_atom_type.pdbx_scat_Cromer_Mann_b5,_refine.pdbx_average_fsc_overall, _refine.pdbx_average_fsc_work,_refine.pdbx_average_fsc_free,_refine_ls_shell.pdbx_fsc_work,_refine_ls_shell.pdbx_fsc_free, _refine_hist.pdbx_number_residues_total,_refine_hist.pdbx_B_iso_mean_ligand,_refine_hist.pdbx_B_iso_mean_solvent, _atom_site_anisotrop.pdbx_PDB_model_num</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.144</td> <td class="my-monospace">2014-02-06</td> <td class="my-monospace"> Changes (cl/jdw): + Update of enumerations for save__em_experiment.reconstruction_method</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.143</td> <td class="my-monospace">2014-01-24</td> <td class="my-monospace"> Changes (ep/jdw): + Update of internal descriptions and enumerations for deposition system.</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.142</td> <td class="my-monospace">2014-01-23</td> <td class="my-monospace"> Changes (ep/jdw): + Update of internal descriptions and enumerations for deposition system.</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.141</td> <td class="my-monospace">2014-01-21</td> <td class="my-monospace"> Changes (ep/jdw): + Update of internal descriptions and enumerations for deposition system.</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.140</td> <td class="my-monospace">2014-01-20</td> <td class="my-monospace"> Changes (ep/jdw): + Update of internal descriptions and enumerations for deposition system.</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.139</td> <td class="my-monospace">2014-01-17</td> <td class="my-monospace"> Changes (jdw): + Update enumerations for item _pdbx_database_status.status_code + add category pdbx_related_exp_data_set + In pdbx_related_exp_data_set limit references to DOI types + Update item descriptions and examples for _pdbx_depui_entity_features.type,_entity_poly.pdbx_target_identifier,_reflns.pdbx_Rsym_value, _refine.pdbx_solvent_vdw_probe_radii,_refine.pdbx_solvent_ion_probe_radii,_citation.pdbx_database_id_DOI,_entity.pdbx_description, and _exptl_crystal_grow.pdbx_details. + Update of internal descriptions and enumerations for deposition system.</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.138</td> <td class="my-monospace">2013-12-20</td> <td class="my-monospace"> Changes (jdw): + Update mandatory codes for category pdbx_contact_author. + Update enumerations for category software.</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.137</td> <td class="my-monospace">2013-12-10</td> <td class="my-monospace"> Changes (jdw): + Update mandatory codes for category pdbx_contact_author. + Update enumerations for category software.</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.136</td> <td class="my-monospace">2013-11-22</td> <td class="my-monospace"> Changes (cl/jdw): + new EMD mapping extension dictionary added. + local context of _pdbx_database_status.status_code_sf removed. + Update context to WWPDB_LOCAL for item _entity_poly.pdbx_sequence_evidence_code + Update context values to WWPDB_LOCAL for categories database_PDB_remark and pdbx_contact_author + multiple updates of EMD/EM extensions. + category group updates</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.135</td> <td class="my-monospace">2013-10-17</td> <td class="my-monospace"> Changes (jdw): + added _pdbx_depui_upload.file_content_type and remove enumeration from _pdbx_depui_upload.file_type. + includes any local meta-data changes coded into the deposition system. + update internal metadata for deposition system + add data categories for messaging pdbx_deposition_message_file_reference and pdbx_deposition_message_info + update mandatory codes and category group assignments + Reassign context RCSB_LOCAL to WWPDB_LOCAL + update software application enumerations. + Update category and item item context values in categories audit_contact_author, pdbx_database_proc, pdbx_entity_name, struct_biol_gen, atom_site and pdbx_database_status. + add internal items _pdbx_database_status.date_begin_processing, _pdbx_database_status.date_end_processing, _pdbx_database_status.date_begin_deposition, _pdbx_database_status.date_begin_release_preparation, _pdbx_database_status.date_author_release_request</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.134</td> <td class="my-monospace">2013-08-27</td> <td class="my-monospace"> Changes (jdw): + Added status flags -- _pdbx_depui_status_flags.is_ligand_processing_complete _pdbx_depui_status_flags.sample_xyz_sequence_alignments_valid _pdbx_depui_entity_status_flags.sample_xyz_sequence_alignments_valid + Added local category context to all internal categories.</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.133</td> <td class="my-monospace">2013-06-18</td> <td class="my-monospace"> Changes (jdw): + updated advisory limits for _reflns_shell.d_res_low and _refine_ls_shell.d_res_low</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.132</td> <td class="my-monospace">2013-06-16</td> <td class="my-monospace"> Changes (jdw): + add _pdbx_seq_map_depositor_info.entity_id _pdbx_seq_map_depositor_info.auth_asym_id _pdbx_seq_map_depositor_info.one_letter_code _pdbx_seq_map_depositor_info.one_letter_code_mod</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.131</td> <td class="my-monospace">2013-06-14</td> <td class="my-monospace"> Changes (jdw): + update enumerations for _pdbx_struct_ref_seq_depositor_info.db_name</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.130</td> <td class="my-monospace">2013-06-14</td> <td class="my-monospace"> Changes (jdw): + added _pdbx_depui_status_flags.has_accepted_terms_and_conditions + updated advisory and hard limits to include equivalence on the boundary endpoints.</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.129</td> <td class="my-monospace">2013-05-29</td> <td class="my-monospace"> Changes (jdw): + _pdbx_database_status.pdbx_annotator replaces _pdbx_database_status.rcsb_annotator</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.128</td> <td class="my-monospace">2013-05-23</td> <td class="my-monospace"> Changes (jdw): + add item _entity_poly.pdbx_sequence_evidence_code</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.127</td> <td class="my-monospace">2013-04-27</td> <td class="my-monospace"> Changes (jdw): + Update alternate descriptions and enumerations for deposition system.</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.126</td> <td class="my-monospace">2013-04-16</td> <td class="my-monospace"> Changes (jdw): + Set _pdbx_contact_author.role and _pdbx_contact_author.role internally mandatory. + Set _pdbx_contact_author.name_mi optional + Relax regular expression for _pdbx_struct_ref_seq_depositor_info.db_seq_one_letter_code + Set _entity_poly.pdbx_seq_one_letter_code, _entity_src_gen.pdbx_gene_src_scientific_name, _entity_src_nat.pdbx_organism_scientific internally mandatory. + Add _pdbx_depui_status_flags.has_helical_symmetry, _pdbx_depui_status_flags.has_point_symmetry, _pdbx_depui_status_flags.has_cyclic_symmetry +</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.125</td> <td class="my-monospace">2013-04-08</td> <td class="my-monospace"> Changes (jdw): + add items _pdbx_struct_ref_seq_dif_depositor_info.entity_id and _pdbx_chem_comp_instance_depositor_info.formula</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.124</td> <td class="my-monospace">2013-03-15</td> <td class="my-monospace"> Changes (jdw): + add optional items _pdbx_validate_main_chain_plane.label_alt_id, _pdbx_validate_planes.lable_alt_id, _pdbx_validate_torsion.label_alt_id</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.123</td> <td class="my-monospace">2013-03-12</td> <td class="my-monospace"> Changes (jdw): + add category pdbx_depui_entity_features</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.122</td> <td class="my-monospace">2013-03-11</td> <td class="my-monospace"> Changes (jdw): + add items _pdbx_depui_status_flags.primary_citation_status, _pdbx_depui_status_flags.reference_citation_status, _pdbx_depui_status_flags.corresponding_author_status</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.121</td> <td class="my-monospace">2013-03-07</td> <td class="my-monospace"> Changes (jdw): + bulk import of RCSB local enumerations into internal pdbx_item_enumeration containers,</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.120</td> <td class="my-monospace">2013-03-01</td> <td class="my-monospace"> Changes (jdw): + consolidated pdbx_struct_ref_depositor_info into pdbx_struct_ref_seq_depositor_info</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.119</td> <td class="my-monospace">2013-02-20</td> <td class="my-monospace"> Changes (jdw): + restore main public version of mmcif_pdbx-def-2.dic + added _pdbx_depui_status_flags.prediction_target and category pdbx_depui_entity_status_flags</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.118</td> <td class="my-monospace">2013-02-20</td> <td class="my-monospace"> Changes (jdw): + Added internal category pdbx_chem_comp_upload_depositor_info to hold potentially multiple data files per chemical component.</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.117</td> <td class="my-monospace">2013-02-13</td> <td class="my-monospace"> Changes (jdw): + Added internal categories -depui_validation_status_flags, pdbx_depui_upload, pdbx_depui_status_flags</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.116</td> <td class="my-monospace">2013-02-13</td> <td class="my-monospace"> Changes (jdw): + added _pdbx_helical_symmetry_depositor_info.status_flag and _pdbx_point_symmetry_depositor_info.status_flag + updated the collection of advisory boundary values --</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.115</td> <td class="my-monospace">2013-02-06</td> <td class="my-monospace"> Changes (jdw,kh): + Add categories pdbx_chem_comp_subcomponent_struct_conn and pdbx_chem_comp_subcomponent_entity_list. + For item _pdbx_chem_comp_subcomponent_entity_list.type change data type to uline and extend enumeration. + Set mandatory codes to optional for categories emd, emd_map and pdbx_nmr_software_task</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.114</td> <td class="my-monospace">2012-12-14</td> <td class="my-monospace"> Changes (eu,ag): + Added items _pdbx_nmr_assigned_chem_shift_list.label, _pdbx_nmr_assigned_chem_shift_list.conditions_label, _pdbx_nmr_spectral_peak_list.label, and _pdbx_nmr_spectral_peak_list.conditions_label</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.113</td> <td class="my-monospace">2012-12-04</td> <td class="my-monospace"> Changes (eu,ag): + Add _pdbx_nmr_exptl.sample_state</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.112</td> <td class="my-monospace">2012-11-12</td> <td class="my-monospace"> Changes (cl,jdw): + Update to the 3DEM data categories -</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.111</td> <td class="my-monospace">2012-11-08</td> <td class="my-monospace"> Changes (cl,jdw): + Update to the 3DEM data categories -</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.110</td> <td class="my-monospace">2012-11-07</td> <td class="my-monospace"> Changes (ss,sv,jdw): +Added item _pdbx_entity_src_gen_depositor_info.entity_id +Removed item _pdbx_entity_src_gen_depositor_info.alt_source_flag and _pdbx_entity_src_gen_depositor_info.gene_src_strain +Items _pdbx_entity_src_gen_depositor_info.beg_seq_num and _pdbx_entity_src_gen_depositor_info.end_seq_num set to mandatory +Data types for _pdbx_entity_src_gen_depositor_info.host_org_ncbi_taxonomy_id set to int</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.109</td> <td class="my-monospace">2012-10-15</td> <td class="my-monospace"> Changes (jdw): + pdbx_chem_comp_instance_depositor_info + Update joint enumerations for _pdbx_reference_molecule.class. + Update enumeration list for _em_imaging.specimen_holder_model</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.108</td> <td class="my-monospace">2012-10-03</td> <td class="my-monospace"> Changes (jdw): + Adjust mandatory codes for items in the pdbx_contact_author category. + Update all current extension dictionaries in + Correct version number typo.</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.107</td> <td class="my-monospace">2012-09-19</td> <td class="my-monospace"> Changes (jdw): + Rename categories to: pdbx_reference_linked_entity, pdbx_reference_linked_entity_comp_list, pdbx_reference_linked_entity_link, and pdbx_reference_linked_entity_comp_link and distinguish inter and intra entity linkages. + Revised enumeration for _pdbx_reference_linked_entity.link_to_entity_type</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.106</td> <td class="my-monospace">2012-09-18</td> <td class="my-monospace"> Changes (jdw): + remove existing EM dictionary which duplicates new EM item definitions + add categories pdbx_reference_linked_entity, pdbx_reference_linked_entity_list, pdbx_reference_linked_entity_link.</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.105</td> <td class="my-monospace">2012-09-06</td> <td class="my-monospace"> Changes (jdw): + Revised definition of _struct_conn.pdbx_leaving_atom_flag. + Add definition _pdbx_solvent_atom_site_mapping.symmetry/symmetry_as_xyz</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.104</td> <td class="my-monospace">2012-09-01</td> <td class="my-monospace"> Changes (jdw): + Added category pdbx_audit_support extension. + Incorporated D&A alternate descriptions and boundary values.</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.103</td> <td class="my-monospace">2012-08-29</td> <td class="my-monospace"> Changes (jdw/jy): + Update enumerations for _pdbx_family_prd_audit.action_type and _pdbx_prd_audit.action_type + Update enumerations for _pdbx_reference_molecule.class/type, _pdbx_molecule_features.class/type + Added category for publication reference data - PDBX_REFERENCE_PUBLICATION_LIST</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.102</td> <td class="my-monospace">2012-08-28</td> <td class="my-monospace"> Changes (jdw/cl): + added category group em_group_da + added EM extension dictionaries for D&A project. _em_experiment.entry_id _em_experiment.reconstruction_method _em_experiment.specimen_type _em_software.ordinal _em_software.classification _em_software.name _em_software.version _em_assembly.entry_id _em_assembly.name _em_assembly.composition _em_assembly.num_components _em_assembly.mol_wt_exp _em_assembly.mol_wt_theo _em_assembly.mol_wt_method _em_assembly.details _em_entity_assembly.id _em_entity_assembly.type _em_entity_assembly.name _em_entity_assembly.details _em_entity_assembly.organism_scientific _em_entity_assembly.organism_common _em_entity_assembly.strain _em_entity_assembly.tissue _em_entity_assembly.cell _em_entity_assembly.organelle _em_entity_assembly.cellular_location _em_entity_assembly.engineered_flag _em_entity_assembly.expression_system _em_entity_assembly.expression_system_plasmid _em_entity_assembly.go_id _em_entity_assembly.ipr_id _em_entity_assembly.ncbi_taxonomy_id _em_entity_assembly.synonym _em_entity_assembly.mutant_flag _em_entity_assembly.number_of_copies _em_entity_assembly.oligomeric_details _em_entity_assembly.entity_list _em_entity_assembly.mol_wt _em_entity_assembly.mol_wt_method _em_entity_assembly.entity_parent_id _em_virus_entity.id _em_virus_entity.virus_host_category _em_virus_entity.virus_host_species _em_virus_entity.virus_host_ncbi_taxonomy_id _em_virus_entity.virus_host_growth_cell _em_virus_entity.virus_type _em_virus_entity.virus_isolate _em_virus_entity.entity_assembly_id _em_virus_entity.enveloped _em_virus_entity.empty _em_virus_entity.details _em_icos_virus_shells.virus_entity_id _em_icos_virus_shells.id _em_icos_virus_shells.shell_diameter _em_icos_virus_shells.triangulation_num _em_specimen.id _em_specimen.sample_state _em_specimen.num_grids _em_specimen.cryoprotectant _em_specimen.embedding_material _em_specimen.details _em_sample_preparation.id _em_sample_preparation.specimen_id _em_sample_preparation.entity_assembly_id _em_sample_preparation.ph _em_sample_preparation.buffer_id _em_sample_preparation.sample_concentration _em_sample_preparation.details _em_specimen_support.id _em_specimen_support.specimen_id _em_specimen_support.method _em_specimen_support.grid_model _em_specimen_support.grid_material _em_specimen_support.grid_mesh_size _em_specimen_support.grid_type _em_specimen_support.pretreatment _em_specimen_support.details _em_specimen_support.film_material _em_specimen_support.film_topology _em_specimen_support.film_thickness _em_array_formation.id _em_array_formation.specimen_id _em_array_formation.method _em_array_formation.apparatus _em_array_formation.atmosphere _em_array_formation.pH _em_array_formation.temp _em_array_formation.time _em_array_formation.buffer_id _em_array_formation.details _em_array_formation.number_arrays _em_array_formation.mean_2d_crystal_size _em_stain.id _em_stain.specimen_id _em_stain.type _em_stain.material _em_stain.details _em_buffer.id _em_buffer.name _em_buffer.details _em_buffer_components.id _em_buffer_components.buffer_id _em_buffer_components.name _em_buffer_components.conc _em_buffer_components.conc_units _em_buffer_components.details _em_vitrification.id _em_vitrification.specimen_id _em_vitrification.cryogen_name _em_vitrification.freezing_technique _em_vitrification.humidity _em_vitrification.temp _em_vitrification.ambient_temp _em_vitrification.instrument _em_vitrification.method _em_vitrification.time_resolved_state _em_vitrification.details _em_imaging.id _em_imaging.astigmatism _em_imaging.electron_beam_tilt_params _em_imaging.specimen_id _em_imaging.detector_id _em_imaging.scans_id _em_imaging.microscope_model _em_imaging.specimen_holder_model _em_imaging.details _em_imaging.date _em_imaging.accelerating_voltage _em_imaging.illumination_mode _em_imaging.mode _em_imaging.nominal_cs _em_imaging.nominal_defocus_min _em_imaging.nominal_defocus_max _em_imaging.tilt_angle_min _em_imaging.tilt_angle_max _em_imaging.tilt_angle_increment _em_imaging.second_tilt_axis_flag _em_imaging.nominal_magnification _em_imaging.calibrated_magnification _em_imaging.electron_source _em_imaging.electron_dose _em_imaging.energy_filter _em_imaging.energy_window_min _em_imaging.energy_window_max _em_imaging.temperature _em_imaging.cryogen _em_imaging.detector_distance _em_imaging.recording_temperature_minimum _em_imaging.recording_temperature_maximum _em_imaging.c2_aperture_diameter _em_imaging.alignment_procedure _em_imaging.Cs_corrector _em_imaging.Cc_corrector _em_imaging.phase_plate _em_detector.id _em_detector.details _em_detector.class _em_detector.type _em_detector.detective_quantum_efficiency _em_image_scans.id _em_image_scans.number_digital_images _em_image_scans.details _em_image_scans.scanner_model _em_image_scans.scanner_sampling_size _em_image_scans.apix_sampling _em_image_scans.od_range _em_image_scans.quant_bit_size _em_image_scans.width _em_image_scans.height _em_image_scans.sampling_size _em_image_scans.frames_per_image _em_2d_crystal_symmetry.id _em_2d_crystal_symmetry.length_a _em_2d_crystal_symmetry.length_b _em_2d_crystal_symmetry.angle_gamma _em_2d_crystal_symmetry.details _em_2d_crystal_symmetry.angle_alpha _em_2d_crystal_symmetry.angle_beta _em_2d_crystal_symmetry.length_c _em_2d_crystal_symmetry.thickness_c _em_2d_crystal_symmetry.space_group_name_H-M _em_point_symmetry.entry_id _em_point_symmetry.symmetry_type _em_point_symmetry.cyclic_symmetry _em_helical_symmetry.id _em_helical_symmetry.entity_assembly_id _em_helical_symmetry.details _em_helical_symmetry.dyad _em_helical_symmetry.axial_symmetry _em_helical_symmetry.angular_rotation_per_subunit _em_helical_symmetry.axial_rise_per_subunit _em_helical_symmetry.hand _em_2d_projection_selection.entry_id _em_2d_projection_selection.num_particles _em_2d_projection_selection.method _em_2d_projection_selection.details _em_3d_reconstruction.entry_id _em_3d_reconstruction.entity_assembly_id _em_3d_reconstruction.method _em_3d_reconstruction.spatial_filtering _em_3d_reconstruction.masking _em_3d_reconstruction.details _em_3d_reconstruction.resolution _em_3d_reconstruction.resolution_method _em_3d_reconstruction.magnification_calibration _em_3d_reconstruction.ctf_correction_method _em_3d_reconstruction.ctf_correction_type _em_3d_reconstruction.nominal_pixel_size _em_3d_reconstruction.actual_pixel_size _em_3d_reconstruction.num_particles _em_3d_reconstruction.num_class_averages _em_3d_reconstruction.software _em_3d_reconstruction.initial_model_type _em_3d_reconstruction.initial_model_details _em_euler_assignment.id _em_euler_assignment.name _em_euler_assignment.method _em_euler_assignment.num_reference_projections _em_euler_assignment.merit_function _em_euler_assignment.angular_sampling _em_euler_assignment.details _em_electron_crystallography.entry_id _em_electron_crystallography.num_meas_intensities _em_electron_crystallography.num_structure_factors _em_electron_crystallography.details _em_electron_crystallography.d_res_high _em_electron_crystallography.overall_phase_residual _em_electron_crystallography.overall_phase_error _em_electron_crystallography.rejection_criteria_phase_error _em_electron_crystallography.Fourier_space_coverage _em_electron_crystallography.r_merge _em_electron_crystallography.r_sym _em_electron_crystallography_shell.id _em_electron_crystallography_shell.res_low _em_electron_crystallography_shell.res_high _em_electron_crystallography_shell.phase_residual _em_electron_crystallography_shell.num_structure_factors _em_electron_crystallography_shell.num_meas_intensities _em_electron_crystallography_tilt.id _em_electron_crystallography_tilt.tilt_angle _em_electron_crystallography_tilt.num_diffraction_patterns _em_electron_crystallography_tilt.num_micrograph_images _em_tomography.id _em_tomography.entry_id _em_tomography.tilt_angle_incr _em_tomography.num_raw_images _em_tomography.details _em_3d_subvolume_selection.entry_id _em_3d_subvolume_selection.num_subvolumes _em_3d_subvolume_selection.num_tomograms _em_3d_subvolume_selection.method _em_3d_subvolume_selection.details _em_3d_subvolume_classification.id _em_3d_subvolume_classification.name _em_3d_subvolume_classification.method _em_3d_subvolume_classification.num_classes _em_3d_subvolume_classification.merit_function _em_3d_subvolume_classification.details _em_3d_fitting.id _em_3d_fitting.method _em_3d_fitting.target_criteria _em_3d_fitting.software_name _em_3d_fitting.details _em_3d_fitting.overall_b_value _em_3d_fitting.ref_space _em_3d_fitting.ref_protocol _em_3d_fitting_list.id _em_3d_fitting_list.3d_fitting_id _em_3d_fitting_list.pdb_entry_id _em_3d_fitting_list.pdb_chain_id _em_3d_fitting_list.details _emd.emd_entry_id _emd.title _emd_map.emd_entry_id _emd_map.annotation_details _emd_map.format _emd_map.sizeKb _emd_map.axisOrderFast _emd_map.axisOrderMedium _emd_map.axisOrderSlow _emd_map.cell_angle_alpha _emd_map.cell_angle_beta _emd_map.cell_angle_gamma _emd_map.cell_length_a _emd_map.cell_length_b _emd_map.cell_length_c _emd_map.data_type _emd_map.details _emd_map.num_columns _emd_map.num_rows _emd_map.num_sections _emd_map.origin_column _emd_map.origin_row _emd_map.origin_section _emd_map.pixel_x _emd_map.pixel_y _emd_map.pixel_z _emd_map.spaceGroupNumber _emd_map.spacing_x _emd_map.spacing_y _emd_map.spacing_z _emd_map.density_min _emd_map.density_max _emd_map.density_mean _emd_map.density_stddev _emd_map.contour_level _emd_map.contour_level_source _emd_files.id _emd_files.type _emd_files.file_name _emd_status.emd_entry_id _emd_status.current_status _emd_status.last_update _emd_status.deposition_date _emd_status.map_release_date _emd_status_history.id _emd_status_history.date _emd_status_history.code _emd_status_history.processing_site _emd_status_history.annotator_initials _emd_status_history.details _emd_obsolete_supersede.id _emd_obsolete_supersede.obsoleted_emd_entry_id _emd_obsolete_supersede.supersede_emd_entry_id _emd_obsolete_supersede.date _emd_obsolete_supersede.details _emd_auxiliary.id _emd_auxiliary.link _emd_auxiliary.link_data_type _emd_auxiliary.details _emd_database_related.db_name _emd_database_related.db_id _emd_database_related.details _emd_database_related.frame_relationship_flag _emd_database_related.fitted_coordinates_flag _emd_mask.id _emd_mask.annotation_details _emd_mask.format _emd_mask.sizeKb _emd_mask.axisOrderFast _emd_mask.axisOrderMedium _emd_mask.axisOrderSlow _emd_mask.cell_angle_alpha _emd_mask.cell_angle_beta _emd_mask.cell_angle_gamma _emd_mask.cell_length_a _emd_mask.cell_length_b _emd_mask.cell_length_c _emd_mask.data_type _emd_mask.details _emd_mask.num_columns _emd_mask.num_rows _emd_mask.num_sections _emd_mask.origin_column _emd_mask.origin_row _emd_mask.origin_section _emd_mask.pixel_x _emd_mask.pixel_y _emd_mask.pixel_z _emd_mask.spaceGroupNumber _emd_mask.spacing_x _emd_mask.spacing_y _emd_mask.spacing_z _emd_mask.density_min _emd_mask.density_max _emd_mask.density_mean _emd_mask.density_stddev _emd_mask.contour_level _emd_mask.contour_level_source + added various items to capture depositor information for the wwPDB deposition and annotation system. _pdbx_chem_comp_depositor_info.ordinal _pdbx_chem_comp_depositor_info.comp_id _pdbx_chem_comp_depositor_info.name _pdbx_chem_comp_depositor_info.upload_file_type _pdbx_chem_comp_depositor_info.upload_file_name _pdbx_chem_comp_depositor_info.formula _pdbx_chem_comp_depositor_info.type _pdbx_chem_comp_depositor_info.descriptor _pdbx_chem_comp_depositor_info.descriptor_type _pdbx_chem_comp_depositor_info.detailes _pdbx_struct_ref_depositor_info.biol_id _pdbx_struct_ref_depositor_info.db_code _pdbx_struct_ref_depositor_info.db_name _pdbx_struct_ref_depositor_info.entity_id _pdbx_struct_ref_depositor_info.id _pdbx_struct_ref_depositor_info.db_accession _pdbx_struct_ref_depositor_info.seq_one_letter_code _pdbx_struct_ref_depositor_info.align_begin _pdbx_struct_ref_seq_depositor_info.align_id _pdbx_struct_ref_seq_depositor_info.db_align_beg _pdbx_struct_ref_seq_depositor_info.db_align_end _pdbx_struct_ref_seq_depositor_info.details _pdbx_struct_ref_seq_depositor_info.ref_id _pdbx_struct_ref_seq_depositor_info.db_accession _pdbx_struct_ref_seq_depositor_info.db_code _pdbx_struct_ref_depositor_info.db_name _pdbx_struct_ref_seq_depositor_info.db_seq_one_letter_code _pdbx_struct_ref_seq_dif_depositor_info.align_id _pdbx_struct_ref_seq_dif_depositor_info.db_mon_id _pdbx_struct_ref_seq_dif_depositor_info.db_seq_id _pdbx_struct_ref_seq_dif_depositor_info.details _pdbx_struct_ref_seq_dif_depositor_info.auth_mon_id _pdbx_struct_ref_seq_dif_depositor_info.auth_seq_id _pdbx_struct_ref_seq_dif_depositor_info.db_accession _pdbx_struct_ref_seq_dif_depositor_info.db_code _pdbx_struct_ref_dif_depositor_info.db_name _pdbx_struct_ref_dif_depositor_info.annotation _pdbx_struct_assembly_prop_depositor_info.biol_id _pdbx_struct_assembly_prop_depositor_info.type _pdbx_struct_assembly_prop_depositor_info.value _pdbx_struct_assembly_prop_depositor_info.details _pdbx_struct_assembly_depositor_info.details _pdbx_struct_assembly_depositor_info.id _pdbx_struct_assembly_depositor_info.method_details _pdbx_struct_assembly_depositor_info.oligomeric_details _pdbx_struct_assembly_depositor_info.oligomeric_count _pdbx_struct_assembly_depositor_info.matrix_flag _pdbx_struct_assembly_depositor_info.upload_file_name _pdbx_struct_assembly_gen_depositor_info.asym_id_list _pdbx_struct_assembly_gen_depositor_info.assembly_id _pdbx_struct_assembly_gen_depositor_info.oper_expression _pdbx_struct_oper_list_depositor_info.id _pdbx_struct_oper_list_depositor_info.type _pdbx_struct_oper_list_depositor_info.name _pdbx_struct_oper_list_depositor_info.symmetry_operation _pdbx_struct_oper_list_depositor_info.matrix[1][1] _pdbx_struct_oper_list_depositor_info.matrix[1][2] _pdbx_struct_oper_list_depositor_info.matrix[1][3] _pdbx_struct_oper_list_depositor_info.matrix[2][1] _pdbx_struct_oper_list_depositor_info.matrix[2][2] _pdbx_struct_oper_list_depositor_info.matrix[2][3] _pdbx_struct_oper_list_depositor_info.matrix[3][1] _pdbx_struct_oper_list_depositor_info.matrix[3][2] _pdbx_struct_oper_list_depositor_info.matrix[3][3] _pdbx_struct_oper_list_depositor_info.vector[1] _pdbx_struct_oper_list_depositor_info.vector[2] _pdbx_struct_oper_list_depositor_info.vector[3] _pdbx_point_symmetry_depositor_info.entry_id _pdbx_point_symmetry_depositor_info.Schoenflies_symbol _pdbx_point_symmetry_depositor_info.circular_symmetry _pdbx_point_symmetry_depositor_info.H-M_notation _pdbx_helical_symmetry_depositor_info.entry_id _pdbx_helical_symmetry_depositor_info.number_of_operations _pdbx_helical_symmetry_depositor_info.rotation_per_n_subunits _pdbx_helical_symmetry_depositor_info.rise_per_n_subunits _pdbx_helical_symmetry_depositor_info.n_subunits_divisor _pdbx_helical_symmetry_depositor_info.dyad_axis _pdbx_helical_symmetry_depositor_info.circular_symmetry _pdbx_solvent_atom_site_mapping.id _pdbx_solvent_atom_site_mapping.label_alt_id _pdbx_solvent_atom_site_mapping.label_asym_id _pdbx_solvent_atom_site_mapping.label_atom_id _pdbx_solvent_atom_site_mapping.label_comp_id _pdbx_solvent_atom_site_mapping.label_seq_id _pdbx_solvent_atom_site_mapping.pdbx_align _pdbx_solvent_atom_site_mapping.PDB_ins_code _pdbx_solvent_atom_site_mapping.pre_auth_asym_id _pdbx_solvent_atom_site_mapping.pre_auth_atom_id _pdbx_solvent_atom_site_mapping.pre_auth_comp_id _pdbx_solvent_atom_site_mapping.pre_auth_seq_id _pdbx_solvent_atom_site_mapping.pre_PDB_ins_code _pdbx_solvent_atom_site_mapping.pre_auth_alt_id _pdbx_solvent_atom_site_mapping.auth_asym_id _pdbx_solvent_atom_site_mapping.auth_atom_id _pdbx_solvent_atom_site_mapping.auth_comp_id _pdbx_solvent_atom_site_mapping.auth_seq_id _pdbx_solvent_atom_site_mapping.auth_alt_id _pdbx_solvent_atom_site_mapping.occupancy _pdbx_solvent_atom_site_mapping.Cartn_x _pdbx_solvent_atom_site_mapping.Cartn_y _pdbx_solvent_atom_site_mapping.Cartn_z _pdbx_solvent_atom_site_mapping.pre_Cartn_x _pdbx_solvent_atom_site_mapping.pre_Cartn_y _pdbx_solvent_atom_site_mapping.pre_Cartn_z _pdbx_entity_src_gen_depositor_info.alt_source_flag _pdbx_entity_src_gen_depositor_info.seq_type _pdbx_entity_src_gen_depositor_info.beg_seq_num _pdbx_entity_src_gen_depositor_info.end_seq_num _pdbx_molecule_features_depositor_info.entity_id _pdbx_molecule_features_depositor_info.class _pdbx_molecule_features_depositor_info.type _pdbx_molecule_features_depositor_info.name _pdbx_molecule_features_depositor_info.details + added flag for filtering STRUCT_CONN linkages relative to chemical component leaving atom assignments. _struct_conn.pdbx_leaving_atom_flag</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.101</td> <td class="my-monospace">2012-08-22</td> <td class="my-monospace"> Changes (jdw): + added provisional extension for multi-source entities + added provisional extension for branched entities + added provisional extension for residues on special positions + added provisional extension for NMR data items for D&A deposition system + added provisional extension for identifying the ligand in a site</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.100</td> <td class="my-monospace">2012-08-21</td> <td class="my-monospace"> Changes (jdw): + Release as provisional version 5.100</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.407</td> <td class="my-monospace">2024-11-06</td> <td class="my-monospace"> Changes (ep): Changes (ep): + Add enumeration for _diffrn.pdbx_serial_crystal_experiment + Add ssbond to enumeration for _pdbx_data_processing_status.task_name + Add DSA to enumberation for _pdbx_nmr_chem_shift_ref.mol_common_name + Add "SILICON DIOXIDE" to em_support_film.material enumeration</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.406</td> <td class="my-monospace">2024-10-22</td> <td class="my-monospace"> Changes (ep): + Add _pdbx_depui_status_flags.assembly_inferred + Add "Quantifoil R1/4" to _em_sample_support.grid_type enumeration + Add "SILICON DIOXIDE" to _em_sample_support.film_material enumeration + Update enumberations for _pdbx_nmr_constraint_file.constraint_type and _pdbx_nmr_constraint_file.constraint_subtype</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.405</td> <td class="my-monospace">2024-09-23</td> <td class="my-monospace"> Changes (ep/mgb): + PTM extension enumeration list update + Update description of OBS enumeration value in _pdbx_database_status.status_code, _pdbx_database_status.author_release_status_code, _pdbx_database_status.status_code_sf, _pdbx_database_status.status_code_mr, _pdbx_database_status.status_code_cs, _pdbx_database_status.status_code_nmr_data, _pdbx_database_status.post_rel_status + Change key for _pdbx_domain_range to newly created _pdbx_domain_range.id</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.404</td> <td class="my-monospace">2024-08-26</td> <td class="my-monospace"> Changes (ep/mgb): + Add "BURKER D8 VENTURE" and "BRUKER IMUS DIAMOND II" to _diffrn_source.type enumeration + Add 'Quantifoil Active R2/1', 'Quantifoil Active R1.6/0.9', 'Quantifoil Active R1.2/0.8', 'SPT Labtech self-wicking R1.2/0.8' to em_sample_support.grid_type enumeration + Add "SPT LABTECH CHAMELEON" to _em_vitrification.equipment + For _em_imaging.microscope_model create a pdbx_item_enumeration list removing "FEI TITAN" and "FEI TITAN KRIOS" + Add SDF and TIF to _pdbx_chem_comp_upload_depositor_info.upload_file_type enumeration + PTM extension enumeration list update</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.403</td> <td class="my-monospace">2024-06-14</td> <td class="my-monospace"> Changes (ep): + Change context of em_admin to include some attributes in PDB public files</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.402</td> <td class="my-monospace">2024-06-05</td> <td class="my-monospace"> Changes (ep): + Add "home-built" to pdbx_nmr_spectrometer.model for deposition enumeration. + Extend enumerations for pdbx_chem_comp_pcm and pdbx_modification_feature</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.401</td> <td class="my-monospace">2024-05-20</td> <td class="my-monospace"> Changes (ep/mgb): + Remove "D-amino acid" from enumeration from pdbx_modification_feature.type, pdbx_chem_comp_pcm.type. + Removed direct linking modifications from enumeration list for _pdbx_chem_comp_pcm.category + Add "Modify PCM" to pdbx_chem_comp_audit.action_type enumeration. + Add parent/child relationships for _pdbx_nmr_spectral_peak_software.software_id and _pdbx_nmr_chem_shift_software.software_id to _pdbx_nmr_software.ordinal</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.400</td> <td class="my-monospace">2024-04-29</td> <td class="my-monospace"> Changes (ep/mgb): + Remove biological function information from pdbx_modification_feature + Extend em_author_list to support Center for Structural Biology of Infectious Diseases (CSBID) + Change type of _pdbx_chem_comp_upload_depositor_info.upload_file_type to uline to reflect usage. Add JPG and PDBX to enumeration.</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.399</td> <td class="my-monospace">2024-04-15</td> <td class="my-monospace"> Changes (ep): + Extend enumeration of _pdbx_chem_comp_depositor_info.type based on use + Extend _diffrn_source.type enumeration with "PETRA III, DESY BEAMLINE P09 HiPhaX"</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.398</td> <td class="my-monospace">2024-04-01</td> <td class="my-monospace"> Changes (ep): Changes (ep/mgb): + Add "DECTRIS ARINA (0.2k x 0.2k)" to _em_image_recording.film_or_detector_model enumeration + Add RAPD to _software.name enumeration + PTM extension add None to enumerations, and support alt ids. + Update funding enumerations</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.397</td> <td class="my-monospace">2024-03-20</td> <td class="my-monospace"> Changes (ep): + Add Robetta, PHYRE and InsightII to _pdbx_initial_refinement_model.source_name enumeration + Update funding enumerations</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.396</td> <td class="my-monospace">2024-03-04</td> <td class="my-monospace"> Changes (ep/mgb): + Update ptm-extension + Example for _entity_poly.pdbx_seq_one_letter_code updted changing PTO -> TPO + Enumeration for _software.name "MAIN" has roles added. + Add CSearch to _software.name enumeration + Add ASTRA-TOOLBOX to _em_software enumeration + Add 4D-STEM to _em_iaging.mode enumeration + Add PDB-Dev to _database_2.database_id + Update funding enumerations</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.395</td> <td class="my-monospace">2024-02-04</td> <td class="my-monospace"> Changes (ep): + Add "int_list" data type for a comma separated list of positive integers. Use for pdbx_item_type for -pdbx_initial_refinement_model.entity_id_list. Update description for pdbx_initial_refinement_model.entity_id_list. + Add "STFC Large Pixel Detector" to _diffrn_detector.type enumeration.</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.394</td> <td class="my-monospace">2024-01-29</td> <td class="my-monospace"> Changes (ep): + Add enumeration for _pdbx_database_related.db_name + Add "NMRtist" to pdbx_nmr_software.name enumeration</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.393</td> <td class="my-monospace">2024-01-22</td> <td class="my-monospace"> Changes (ep): + Add pdbx_enumeration_enumeration for pdbx_initial_refinement_model.type removing "other" + Add new "DECTRIS PILATUS4 (R,X,XE) CdTe" detectors to _diffrn_detector.type enumeration + Add "GATAN ALPINE (2.3k x 3.2k)" to _em_image_recording.film_or_detector_model + Extend _pdbx_audit_support.funding_organization enumeration</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.392</td> <td class="my-monospace">2023-01-16</td> <td class="my-monospace"> Changes (ep): + em_software.name enumeration change "PanthaRhei" to "Pantha Rhei" + Add "GATAN K3 BIOCONTINUUM (6k x 4k)" to _em_image_recording.film_or_detector_model + Add "RIGAKU HyPix-Arc 100" to _diffrn_detector.type enumeration + Add pdbx_item_description to _entity.details + Extend _pdbx_audit_support.funding_organization enumeration + Add IPCAS to _software.name enumeration</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.391</td> <td class="my-monospace">2023-12-03</td> <td class="my-monospace"> Changes (ep): + Extend _pdbx_audit_support.funding_organization enumeration + Add ARTINA to pdbx_nmr_software.name enumeration + Add "DECTRIS ELA (1k x 0.5k)" to em_image_recording.film_or_detector_model enumeration + Add PanthaRhei and PACEtomo to em_software.name enumeration + Add 'CEOS CEFID' to _em_imaging_optics.energyfilter_name enumeration</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.390</td> <td class="my-monospace">2023-11-20</td> <td class="my-monospace"> Changes (ep): + Remove NDB, BMCD, and BIOISIS from the pdbx_enumeration_list for pdbx_database_related.db_name + Add 'DECTRIS PILATUS4' detectors to _diffrn_detector.type + Extend _pdbx_audit_support.funding_organization enumeration</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.389</td> <td class="my-monospace">2023-10-23</td> <td class="my-monospace"> Changes (ep): + author data type was corrected from 5.387 version so options properly checked + Extend _pdbx_audit_support.funding_organization enumeration + Add "MAR CCD 300 mm" to _diffrn_detector.type + Add definitions for _pdbx_chem_comp_depositor.upload_file_name, _pdbx_chem_comp_depositor.upload_file_type + Add example for _em_start_model.emdb_id</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.388</td> <td class="my-monospace">2023-10-02</td> <td class="my-monospace"> Changes (ep): + Extend _pdbx_audit_support.funding_organization enumeration + PTM extension updates to enumerations + Add Poky to _pdbx_nmr_softare.name enumeration</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.387</td> <td class="my-monospace">2023-08-28</td> <td class="my-monospace"> Changes (ep): + Add EMDB_PUBLIC context to em_staining and em_final_classification categories + author data type extended to support structural genomics names + Add 'I3' to _em_software.name enumeration + Add "RIGAKU HyPix-Arc 150" to _diffrn_detector.type</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.386</td> <td class="my-monospace">2023-08-22</td> <td class="my-monospace"> Changes (ep): + Add em_admin.process_site and em_admin.composite_map + For many EM categories and EMDB_PUBLIC</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.385</td> <td class="my-monospace">2023-08-15</td> <td class="my-monospace"> Changes (ep): + Extend _pdbx_audit_support.funding_organization enumeration + Add "CRYOSOL VITROJET" to em_vitrification.instrument</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.384</td> <td class="my-monospace">2023-08-02</td> <td class="my-monospace"> Changes (ep): + Correct pdbx_item_linked_group_list definitions for pdbx_entity_branch_link + Add PDB-Dev to pdbx_initial_refinement_model.source_name enumeration + Temporary removal atom_site.label_atom_id -> chem_comp_atom.atom_id parent/child relationship</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.383</td> <td class="my-monospace">2023-07-24</td> <td class="my-monospace"> Changes (ep): + Add _em_3d_fitting_list.initial_refinement_model_id + Add "PSI JUNGFRAU 8M" to _diffrn_detector.type enumeration + Add autoPX to _software.name enumeration + Add "SSRF BEAMLINE BL03HB" and "SSRF BEAMLINE BL17UM" to _diffrn_source.type + Extend _pdbx_audit_support.funding_organization enumeration</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.382</td> <td class="my-monospace">2023-07-17</td> <td class="my-monospace"> Changes (ep): + Add "JEOL 1400/HR + YPS FEG" to _em_imaginh.microscope_model enumeration + Add "DECTRIS SINGLA (1k x 1k)" to _em_image_recording.film_or_detector_model enumeration + Extend _pdbx_audit_support.funding_organization enumeration + Add 'consensus EM volume' and 'focused EM volume' to pdbx_database_related.content_type + Add 'Modify backbone' to _pdbx_chem_comp_audit.action_type enumeration + Add 'Modify backbone' to _pdbx_chem_comp_audit.action_type enumeration + Add Servalcat to _em_softare.name, and _software.name enumerations</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.381</td> <td class="my-monospace">2023-06-18</td> <td class="my-monospace"> Changes (ep): + Add AUCO to enumeration of _pdbx_database_status.status_code_nmr_data + Correct pdb_id_u regular expression + Add PTM remediation categories and data _chem_comp.pdbx_pcm, _chem_comp_atom.pdbx_backbone_atom_flag, _chem_comp_atom.pdbx_n_terminal_atom_flag, _chem_comp_atom.pdbx_c_terminal_atom_flag, category pdbx_chem_comp_pcm, _pdbx_entry_details.has_protein_modification, category pdbx_modification_feature</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.380</td> <td class="my-monospace">2023-06-12</td> <td class="my-monospace"> Changes (ep): + Change type of _em_3d_fitting_list.pdb_entry_id to pdb_id_u + Add "MALVERN PANALYTICAL EMPYREAN TUBE" to _diffrn_source.type enumeration + Add _em_entity_assembly_naturalsource.details + Remove open enumeration from _pdbx_nmr_chem_shift_ref.mol_common_name + Make _pdbx_reference_entity_sequence.one_letter_codes non-mandatory + Extend _pdbx_audit_support.funding_organization enumeration</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.379</td> <td class="my-monospace">2023-06-01</td> <td class="my-monospace"> Changes (ep/cl): + Add _ndb_struct_na_base_pair.hbond_type_leontis_westhof to eventually replace _ndb_struct_na_base_pair.hbond_type_12 + Extend _pdbx_audit_support.funding_organization enumeration + Change "LNLS SIRUS" to "LNLS SIRIUS" in _diffrn_source.pdbx_synchrotron_site and _diffrn_source.type enumerations + Change type of _em_obsolete.id to code + Make _diffrn.pdbx_serial_crystal_experiment mandatory for deposition</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.378</td> <td class="my-monospace">2023-05-03</td> <td class="my-monospace"> Changes (ep): + Correct "TFS FALCON 4i (4k x 4k)" to _em_image_recording.film_or_detector_model + Add 'Au-flat 1.2/1.3' to _em_sample_support.grid_type enumeration + Extend _pdbx_audit_support.funding_organization enumeration + Add IPLT to _em_software.name enumeration + Adjust entity_id_list data type to be alphanumeric entities which is more in line with entity.id type. + Define pdb_id_u data type as case insensitive + Change data type for _em_3d_fitting_list.pdb_entry_id to pdb_id_u</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.377</td> <td class="my-monospace">2023-04-12</td> <td class="my-monospace"> + Add 'HOLD FOR 6 WEEKS' to enumerations for _pdbx_database_status.dep_release_code_struct_fact and _pdbx_database_status.dep_release_code_nmr_constraints + Extend _pdbx_audit_support.funding_organization enumeration + Add _reflns.pdbx_redundancy lower limit of 0. + Add 'Histidine' to _pdbx_nmr_chem_shift_ref.mol_common_name enumeration + Update pdbx_nmr_software.name list</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.376</td> <td class="my-monospace">2023-03-14</td> <td class="my-monospace"> Changes (ep): + Move 'EWALD SPHERE CORRECTION' to _em_software.category enumeration + Add _pdbx_depui_entry_details.validated_identifier_ORCID + Add "Malvern Panalytical PIXcel 1D" to _diffrn_detector.type enumeration + Add "TFS FALCON 4i (4k x 4x)" to _em_image_recording.film_or_detector_model + Extend _pdbx_audit_support.funding_organization enumeration</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.375</td> <td class="my-monospace">2023-03-07</td> <td class="my-monospace"> Changes (ep): + Extend _pdbx_audit_support.funding_organization enumeration + Add 'Ewald Sphere Correction' to _em_software.name enumeration</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.374</td> <td class="my-monospace">2023-01-28</td> <td class="my-monospace"> Changes (ep): + Change _pdbx_sifts_xref_db.res_type enumeration to examples + Add pdbx_sifts_xref_db_segments.seq_id_start and pdbx_sifts_xref_db_segments.seq_id_start as keys for category.</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.373</td> <td class="my-monospace">2023-01-09</td> <td class="my-monospace"> Changes (ep): + Add 'PDB-Dev' to _pdbx_database_related.db_name enumeration</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.372</td> <td class="my-monospace">2022-12-15</td> <td class="my-monospace"> Changes (ep): + Mark _pdbx_initial_refinement_model.type as non-mandatory for deposition system + Attributes for _struct_ncs_oper changed to mandatory + Deposition type for _em_imaging.nominal_defocus_max and _em_imaging.nominal_defocus_min to int + Add "RIGAKU PhotonJet-S" and "BRUKER IMUS DIAMOND MICROFOCUS" to _diffrn_source.type + Add EMIRA to _em_software.name enumeration + Add CSBID to _pdbx_SG_project.full_name_of_center, _pdbx_SG_project.initial_of_center enumerations + Extend _pdbx_audit_support.funding_organization enumeration</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.371</td> <td class="my-monospace">2022-12-01</td> <td class="my-monospace"> Changes (ep/cv/ab): + Integrate unmerged data by bringing in minimal imgCIF dictionary and define new categories _pdbx_diffrn_batch, _pdbx_diffrn_cell, _pdbx_diffrn_orientation _pdbx_diffrn_batch_scan, _pdbx_diffrn_detector_panel_mapping. Add _diffrn_refln.frame_id, _diffrn_refln.pdbx_batch_id, _diffrn_refln.pdbx_detector_obs_fast, _diffrn_refln.pdbx_detector_obs_slow, _diffrn_refln.pdbx_detector_calc_fast, _diffrn_refln.pdbx_detector_calc_slow, _diffrn_refln.pdbx_panel_mapping_id + Define uchar5 data type _chem_comp.three_letter_code</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.370</td> <td class="my-monospace">2022-10-25</td> <td class="my-monospace"> Changes (ep): + Add _em_3d_fitting_list.accession_code, _em_3d_fitting_list.source_name, _em_3d_fitting_list.type + Deprecate _em_3d_fitting.initiali_refinement_model_id + Extend em_software.name list to include CryoDRGN and CryoDRGN2 + Add "DECTRIS EIGER2 X CdTe 9M" and "DECTRIS EIGER2 XE CdTe 9M" to _diffrn_detector.type + Extend _pdbx_audit_support.funding_organization enumeration + Mark _pdbx_nmr_chem_shift_ref.atom_group and _pdbx_nmr_constraint_file.constraint_type as closed enumeration</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.369</td> <td class="my-monospace">2022-08-31</td> <td class="my-monospace"> Changes (ep/rp/cv): + Consolidate EMD/EM namespaces + Update _pdbx_audit_support + Correct _atom_type.scat_Cromer_Mann_* example + Add cctbx.xfel.merge and STARGazer to _software.name enumeration + Add "DECTRIS EIGER2 R 4M" to _diffrn_detector.type + Expand range of _em_image_scans.sampling_size to 100.0</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.368</td> <td class="my-monospace">2022-07-19</td> <td class="my-monospace"> Changes (ep/mw): + Extend _pdbx_audit_support.funding_organization enumeration + Add "DIRECT ELECTRON APOLLO (4k x 4k)" to _em_image_recording.film_or_detector_mode enumeration + Initial model extension added to dictionary (_pdbx_initial_refinement) + pdbx_investigation category added to the model + Add "CHESS BEAMLINE 7B2" to _diffrn_source.type enumeration + include 0 in the range for _reflns.pdbx_aniso_B_tensor_eigenvalue_* + Mark _struct.pdbx_structure_determination_methodology as internal to WWPDB</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.367</td> <td class="my-monospace">2022-06-01</td> <td class="my-monospace"> Changes (ep): + Extend _pdbx_audit_support.funding_organization enumeration + Add "POSITION SENSITIVE DETECTOR" to _diffrn_detector.detector enumeration + Add Careless and Xtrapol8 to _software.name PDBX enumeration + Add "5ATM 3HE, CURVED 120X30 DEGREES" to _diffrn_detector.type enumeration</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.366</td> <td class="my-monospace">2022-04-13</td> <td class="my-monospace"> Changes (ep): + Add _em_depui.composite_map_deposition and _emd_depui.composite_map_deposition + Extend _pdbx_audit_support.funding_organization enumeration + Add pdbx_data_usage category</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.365</td> <td class="my-monospace">2022-03-16</td> <td class="my-monospace"> Changes (ep): + Cleanup enumeration of _pdbx_initial_refinement_model.source_name + Add PRIME-X to _software.name enumeration + Enhance description of _entity_poly.pdbx_seq_one_letter_code_can to describe chromophore handling + Extend _pdbx_audit_support.funding_organization enumeration</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.364</td> <td class="my-monospace">2022-02-23</td> <td class="my-monospace"> Changes (ep/Aaron Brewster): + Enchanced descriptions and addition of attributes to better support serial crystallography. New definitions: _pdbx_serial_crystallography_data_reduction.lattices_merged _cell.pdbx_esd_method _reflns.pdbx_CC_split_method, _exptl_crystal.pdbx_mosaic_method _exptl_crystal.pdbx_mosaic_block_size _exptl_crystal.pdbx_mosaic_block_size_esd _pdbx_crystal_alignment.overall_beam_divergence _pdbx_crystal_alignment.overall_beam_divergence_esd Updated definitions (description, ranges) _pdbx_crystal_alignment.crossfire_x, _pdbx_crystal_alignment.crossfire_x_esd, _pdbx_crystal_alignment.crossfire_y, _pdbx_crystal_alignment.crossfire_y_esd, _exptl_crystal.pdbx_mosaicity + Extend _pdbx_audit_support.funding_organization enumeration + Added 'ESRF BEAMLINE BM07' to _diffrn_source.type enumeration and 'BM07' to diffrn_source.pdbx_synchrotron_beamline + Clean up enumeration in pdbx_initial_refinement_model.source_name + Add pdbx_chem_comp_audit to audit_group</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.363</td> <td class="my-monospace">2022-02-02</td> <td class="my-monospace"> Changes (ep): + Adjust enumerations in _database_2.database_id + Extend _pdbx_sudit_support.funding_organization enumeration</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.362</td> <td class="my-monospace">2022-01-12</td> <td class="my-monospace"> Changes (ep): + Introduce _pdbx_entity_remapping and _pdbx_chain_remapping categories + Extend _pdbx_sudit_support.funding_organization enumeration + Add "xia2.multiplex" to _software.name enumeration + Extend enumeration _database_2.database_id to include "AFDB", "SMR", "MODBASE", "AFDB" + Add _struct.pdbx_structure_determination_methodology + Add "EMS Lacey Carbon" to _emd_grid.model and _em_sample_support.grid_type</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.361</td> <td class="my-monospace">2021-12-07</td> <td class="my-monospace"> Changes (ep/Antanas Vaitkus): + Correct capitalization of angstrom in descriptions + Correct capitalization of kelvins as a unit. Remove the word "degrees" in context of it + Add "SCINTILLATION" to _diffrn_detector.detector enumeration + Add "Cyberstar LaBr3", "DECTRIS EIGER2 S 1M", "DECTRIS EIGER2 S 4M", "DECTRIS EIGER2 S 9M", "DECTRIS EIGER2 S 16M" to _diffrn_detector.type deposition enumeration + Add "ESRF BEAMLINE ID22" to _diffrn_source.type enumertion + Add "GSAS", "ISOLDE" and "PRODD" to _software.name enumeration + Extend _pdbx_sudit_support.funding_organization enumeration + Add "TFS Selectris" and "TFS Selectris X" to _em_imaging_optics.energyfilter_name + Add "FEI tomography" to _em_software.name enumeration + Add pdbx_initial_refinement_model category and definitions for _em_3d_fitting.initial_refinement_model_id, _em_3d_fitting_list.chain_id, _em_3d_fitting_list.chain_residue_range + Add _pdbx_struct_oper_list.full_matrix</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.360</td> <td class="my-monospace">2021-10-31</td> <td class="my-monospace"> Changes (ep): + pdbx_prd_audit.processing_site enumeration change PDBe to PDBE to be consistent with rest of dictionary. + Extend _pdbx_audit_support.funding_organization enumeration. + _refine.ls_R_factor_R_free and _refine.ls_R_factor_obs remove over broad advisory range + Add "RIGAKU PhotonJet-R" to _diffrn_source.type enumeration + Enhance pdb_id and pdb_id_ci to support PDB extented codes</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.359</td> <td class="my-monospace">2021-10-11</td> <td class="my-monospace"> Changes (ep): + Update deposition help text for _diffrn.abient_temp + Extend _pdbx_audit_support.funding_organization enumeration. + Add "BRUKER IMUS 3.0 MICROFOCUS" to _diffrn_source.type enumeration + Add IPET and TomoAlign to _em_software.name enumeration + Change pdx_item_tye for _pdbx_struct_ref_seq_depositor_info.db_seq_one_letter_code</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.358</td> <td class="my-monospace">2021-09-09</td> <td class="my-monospace"> Changes (ep): + Correct advisory limits for _em_image_recording.avg_electron_dose_per_subtomogram and _emd_image_recording.average_electron_dose_per_subtomogram + Extend _pdbx_audit_support.funding_organization enumeration.</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.357</td> <td class="my-monospace">2021-09-01</td> <td class="my-monospace"> Changes (ep): + Using new conditional context for pdbx_contact_author, selectively all principal investogator information out + Extend _pdbx_audit_support.funding_organization enumeration + Extend _em_software.name and _emd_software.name enumerations + Add _em_image_recording.avg_electron_dose_per_subtomogram and _emd_image_recording.average_electron_dose_per_subtomogram + Extend _em_map.type, _emd_map.type and _emd_map_upload.type enumerations</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.356</td> <td class="my-monospace">2021-08-03</td> <td class="my-monospace"> Changes (ep): + Extend _pdbx_audit_support.funding_organization enumeration. + Add internal _struct.pdbx_center_of_mass_x, _struct.pdbx_center_of_mass_y, _struct.pdbx_center_of_mass_z. + Add _em_entity_assembly.chimera and _emd_supramolecule.chimera</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.355</td> <td class="my-monospace">2021-07-18</td> <td class="my-monospace"> Changes (ep): + Extend _pdbx_audit_support.funding_organization enumeration. + Correct captilatization in description of _pdbx_nmr_spectrometer.field_strength + Add "SSRF BEAMLINE BL10U2" and "SSRF BEAMLINE BL02U1" to _diffrn_source.type enumeration</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.354</td> <td class="my-monospace">2021-07-08</td> <td class="my-monospace"> Changes (ep): + Extend _pdbx_audit_support.funding_organization enumeration. + Make _pdbx_contact_author.name_salutation non-mandatory</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.353</td> <td class="my-monospace">2021-06-30</td> <td class="my-monospace"> Changes (ep): + Add "GN" to _pdbx_nmr_spectrometer.model enumeration + Update examples for _database_2.pdbx_database_accession and _database_2.pdbx_DOI + Update enumeration and details for _pdbx_nmr_spectrometer.field_strength + Extend _pdbx_audit_support.funding_organization enumeration. + Update description of _pdbx_molecule_features.prd_id + Add 'UCSF ChimeraX' to _em_software.name + Mark _struct.pdbx_descriptor as local context + Add limits for _refine.ls_percent_reflns_obs + Add _em_author_list.identifier_ORCID and _emd_author_list.identifier_ORCID</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.352</td> <td class="my-monospace">2021-06-08</td> <td class="my-monospace"> Changes (ep): + Add _item_enumeration.pdbx_value_display for _exptl.method + Add SIFTS extension - creating categories _pdbx_sifts_xref_db, _pdbx_sifts_xref_db_segments, _pdbx_sifts_unp_segments and attributes _atom_site.pdbx_label_index, _atom_site.pdbx_sifts_xref_db_name, _atom_site.pdbx_sifts_xref_db_acc, _atom_site.pdbx_sifts_xref_db_num, _atom_site.pdbx_sifts_xref_db_res</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.351</td> <td class="my-monospace">2021-06-02</td> <td class="my-monospace"> Changes (ep): + Add 'NMR Distance Restraints' and 'electron microscopy' to enumerations for _pdbx_struct_assembly_auth_evidence.experimental_support and pdbx_struct_assembly_auth_evidence_depositor_info.experimental_support + Create new attribute _pdbx_depui_status_flags.has_accepted_assemblies + Create new attribute _pdbx_database_status.date_accepted_terms_and_conditions + Update description of _reflns.pdbx_redundancy + Extend _pdbx_audit_support.funding_organization enumeration. + Add 'TFS TUNDRA' to _em_imaging.microscope_model and _emd_microscopy.microscope</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.350</td> <td class="my-monospace">2021-04-19</td> <td class="my-monospace"> Changes (ep): + Add hard limits to _emd_sectioning_focused_ion_beam.initial_thickness and _em_focused_ion_beam.initial_thickness + Update description of _struct_ref_seq_dif.pdbx_auth_seq_num + Add "ALS BREAMLINE 2.0.1" to _diffrn_source.type enumeration. "2.0.1" added to enumeration for _diffrn_source.pdbx_synchrotron_beamline. + Update _pdbx_audit_support.funding_organization enumeration + Add 'subTOM' to _em_software.name enumeration and _emd_software.name + Deprecate _emd_map_upload.pixel_spacing and replace by _emd_map_upload.pixel_spacing_{x,y,z} + Change _emd_map.symmetry_space_group and _em_map.symmetry_space_group type from line to int + Add acetonitrile to enumeration for _pdbx_nmr_chem_shift_ref.mol_common_name</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.349</td> <td class="my-monospace">2021-03-15</td> <td class="my-monospace"> Changes (ep/jw): + Add category pdbx_audit_conform + Update funding enumerations _pdbx_audit_support.funding_organization + Update descriptions for _entity_poly.pdbx_seq_one_letter_code_can and _entity_poly.pdbx_seq_one_letter_code + Add "PSI JUNGFRAU 4M" to _diffrn_detector.type enumerations</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.348</td> <td class="my-monospace">2021-03-10</td> <td class="my-monospace"> Changes (jt): + Update funding enumerations _pdbx_audit_support.funding_organization</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.347</td> <td class="my-monospace">2021-02-16</td> <td class="my-monospace"> Changes (Global Phasing Ltd.): + Add items for anomalous diffraction statistics _reflns.pdbx_redundancy_anomalous, _reflns.pdbx_CC_half_anomalous, _reflns.pdbx_absDiff_over_sigma_anomalous, _reflns.pdbx_percent_possible_anomalous, _reflns_shell.pdbx_redundancy_anomalous, _reflns_shell.pdbx_CC_half_anomalous, _reflns_shell.pdbx_absDiff_over_sigma_anomalous, and _reflns_shell.pdbx_percent_possible_anomalous + Add items to cater for anistropic diffraction Ellipsoid fit to the cut-off surface: _reflns.pdbx_aniso_diffraction_limit_axis_?_ortho[?], _reflns.pdbx_aniso_diffraction_limit_? Anisotropic B tensor: _reflns.pdbx_aniso_B_tensor_eigenvector_?_ortho[?], _reflns.pdbx_aniso_B_tensor_eigenvalue_? Statistics specific to anisotropic diffraction: _reflns.pdbx_percent_possible_*, _reflns_shell.pdbx_percent_possible_* for ellipsoidal/spherical and anomalous/non-anomalous diffraction. Also add _reflns.pdbx_orthogonalization_convention and new subcategories unit_vector and eigendecomposition + Add items for a per-reflection signal and parameter-free definition of the cut-off surface _reflns.pdbx_observed_signal_threshold, _reflns.pdbx_signal_type, _reflns.pdbx_signal_details, reflns.pdbx_signal_software_id, _pdbx_refln_signal_binning.ordinal, _pdbx_refln_signal_binning.upper_threshold, _refln.pdbx_signal, _refln.pdbx_signal_status + Add and modify items to cater better for umerged reflection data Add _diffrn_refln.pdbx_detector_x, _diffrn_refln.pdbx_detector_y, _diffrn_refln.pdbx_scale_value Modify _diffrn_refln.pdbx_image_id, _diffrn_refln.pdbx_scan_angle</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.346</td> <td class="my-monospace">2021-01-20</td> <td class="my-monospace"> Changes (ep): + Add LAUENORM to _software.name enumeration + Add 'JEOL 1000EES' to _em_imaging.microscope_model and _emd_microscopy.microscope + Add _citation.pdbx_database_id_patent to record patents + Update funding enumerations _pdbx_audit_support.funding_organization</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.345</td> <td class="my-monospace">2021-01-05</td> <td class="my-monospace"> Changes (ep/mw/cv): + Addition of _diffrn_refln.pdbx_image_id and _diffrn_refln.pdbx_scan_angle + Duplicate words cleanup in descriptions + Add enumerations for _pdbx_exptl_crystal_grow_sol.volume_units and _pdbx_exptl_crystal_grow_comp.conc_units + Add usage information to description of _atom_site + Update funding enumerations _pdbx_audit_support.funding_organization + Add 'ARP/wARP' to _em_software.name and _emd_software.name enumeration + Add _database_2.pdbx_database_acceession and _database_2.pdbx_DOI + Add _emd_specialist_optics.details and _em_imaging_optics.details + Change attributes to non-mandatory: _em_diffraction_stats.overall_phase_error, _em_diffraction_stats.overall_phase_residual, _em_diffraction_stats.r_sym, _emd_crystallography_stats.r_sym, _emd_crystallography_stats.overall_phase_error, and _emd_crystallography_stats.overall_phase_residual. + Change type to float for _em_focused_ion_beam.duration and _emd_sectioning_focused_ion_beam.duration</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.344</td> <td class="my-monospace">2020-11-10</td> <td class="my-monospace"> Changes (ep): + Create categories _em_virus_synthetic and _emd_virus_synthetic + Add 'TFE' to _pdbx_nmr_chem_shift_ref.mol_common_name enumeration + Update funding enumerations + Make _diffrn_refln.standard_code and _diffrn_refln.scale_group_code non-mandatory</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.343</td> <td class="my-monospace">2020-10-27</td> <td class="my-monospace"> Changes (ep): + Remove unused definition of non_negative_int type + add STOPGAP and novaSTA to _emd_software.name and _em_software.name enumerations + add PRIME and ULTIMA to _software.name enumeration + Update funding enumerations + Set upper limits for _reflns_shell.Rmerge_I_obs and _reflns.pdbx_Rmerge_I_obs + Change code for _pdbx_depui_entry_details.replace_pdb_id to pdbx_PDB_obsoleted_db_id + Extend enumeration for _struct_conf_type.id to include "BEND" and "OTHER" + Add SYNTHETIC to _emd_supramolecule.source and _em_entity_assembly.source + Add categories _em_entity_assembly_synthetic and _emd_synthetic_source + Add attribute _atom_site.pdbx_atom_ambiguity + Add category pdbx_database_doi</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.342</td> <td class="my-monospace">2020-10-05</td> <td class="my-monospace"> Changes (ep): + Remove trailing newlines from dictionary + Update funding enumerations + Add 'TMSP' to _pdbx_nmr_chem_shift_ref.mol_common_name enumeration + Add 'CRISpy' to _software.name enumeration + Add pdbx_PDB_obsoleted_db_id for list of PDB ids that are obsoleted + Add upper limit for reflns_shell.percent_possible_all + Add AUCO to enumeraion for _pdbx_database_status.status_code_cs and _pdbx_database_status.status_code_mr</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.341</td> <td class="my-monospace">2020-09-08</td> <td class="my-monospace"> Changes (ep): + Update funding enumerations + Add advisory limits for _em_focused_io_beam.final_thickness and _emd_sectioning_focused_ion_beam.final_thickness + Add 'methylene carbons' to _pdbx_nmr_chem_shift_ref.atom_group enumeraton + Change type of struct_ncs_oper.id, struct_ncs_end_gen.oper_id, pdbx_struct_ncs_virus_gen.oper_id to int to match current PDB practice + Change _pdbx_struct_assembly.details mandatory based on current use. + Change type of pdbx_database_released.db_id type from line to pdbx_related_db_id</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.340</td> <td class="my-monospace">2020-08-19</td> <td class="my-monospace"> Changes (ep): + Create enumeration for pdbx_chem_comp_feture.type + Remove ranges for _diffrn_source.pdbx_wavelength_list as not compatible with code type 'line' + Update funding enumerations + Add SHELXT to _software.name enumeration + Remove obsolete enumberations from chem_comp.type 'D-saccharide 1,4 and 1,6 linking', 'L-saccharide 1,4 and 1,4 linking', 'L-saccharide 1,4 and 1,6 linking', 'D-saccharide 1,4 and 1,4 linking' + Close the enumerations for _pdbx_nmr_constraint_file.constraint_subtype and _pdbx_nmr_systematic_chem_shift_offset.type + Range for _emd_helical_parameters.delta_phi extended to include 180.0 + Add 'NMR relaxation study' to _pdbx_struct_assembly_auth_evidence.experimental_support eumeration</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.339</td> <td class="my-monospace">2020-07-20</td> <td class="my-monospace"> Changes (ep): + Add "Synthetic opioid" and "Transition state mimetic' to _pdbx_reference_molecule.class and _pdbx_molecule_features.class enumerations. + Add "The Mark Foundation", "Canada Research Chairs" and "The Swedish Foundation for Strategic Research" to _pdbx_audit_support.funding_organization" + Add 'PELCO Ultrathin Carbon with Lacey Carbon' to _em_sample_support.grid_type enumeration</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.338</td> <td class="my-monospace">2020-07-11</td> <td class="my-monospace"> Changes (ep): + Add "MANACA" to _diffrn_source.pdbx_synchrtron_beamline, "LNLS SIRUS BEAMLINE MANACA" to _diffrn_source.type and "LNLS SIRUS" to _diffrn_source.pdbx_synchrotron enumerations. + Update descripion of _atom_site.id to reflect current PDB usage + Document that attributes in _reflns_shell category apply to multiple shells and not just highest resolution shell + Require _emd_helical_parameters.delta_z to be greater that 0 + Add "The Mark Foundation" to _pdbx_audit_support.funding_organization" + Correct "deposition_email" type to be POSIX compliant</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.337</td> <td class="my-monospace">2020-06-23</td> <td class="my-monospace"> Changes (ep): + Add 'Transport activator' to _pdbx_reference_molecule.class and _pdbx_molecule_features.class + Remove 'ELETTRA BEAMLINE XRD2' to _diffrn_source.type and _diffrn_source.pdbx_synchrotron_beamline. 'ELETTRA BEAMLINE 11.2C' is the same one. + Add 'S-Glycosylation' to enumeration for _struct_conn.pdbx_role + Add 'eTasED' to em_software.name enumeration + Restrict type of em_single_particle_entity.id to integer + Add 'Remediation' to pdbx_audit_revision_details.type enumeration</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.336</td> <td class="my-monospace">2020-06-08</td> <td class="my-monospace"> Changes (ep): + Add new funding agency: 'Consortia for HIV/AIDS Vaccine Development' and 'Tower Cancer Research Foundation' + Synchronize pdbx_molecule_features.class enumeration from _pdbx_reference_molecule.class + _em_software.name enumeration add DIALS + Add 'SSRL BEAMLINE BL12-1' to _diffrn_source.type enumeration</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.335</td> <td class="my-monospace">2020-06-05</td> <td class="my-monospace"> Changes (ep): + Remove local contexts from the following categories: _pdbx_chem_comp_synonyms, _pdbx_chem_comp_related, _pdbx_chem_comp_atom_related, _pdbx_entity_branch_list, _pdbx_entity_branch_link, _pdbx_entity_branch, _pdbx_branch_scheme + Remove local contexts from the following attributs: _struct_conn.pdbx_ptnr1_atom_stereo_config, _struct_conn.pdbx_ptnr1_leaving_atom_id, _struct_conn.pdbx_ptnr2_atom_stereo_config, _struct_conn.pdbx_ptnr2_leaving_atom_id, _entity_name_com.pdbx_provenance</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.334</td> <td class="my-monospace">2020-05-26</td> <td class="my-monospace"> Changes (ep): + Incorpoate branch chain dictionary extension + Extend enumeration of pdbx_audit_support.funding_organization + Correct diffrn_source.type for "ORNL Spallation Neutron Source BEAMLINE MANDI" to indicate spallation source. + Add "oligosaccharide" to _pdbx_reference_entity_poly.type + Add 'cxi.merge' to _software.name enumeration. Remove 'BUSTER-TNT' + Limit _reflns_shell.Rmerge_I_obs in deposition + Extend enumeration of _pdbx_reference_molecule.class</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.333</td> <td class="my-monospace">2020-04-13</td> <td class="my-monospace"> Changes (jt/ep): + Add 'ELETTRA BEAMLINE XRD2' to _diffrn_source.type and _diffrn_source.pdbx_synchrotron_beamline + Add new funding agency: 'Technology Agency of the Czech Republic', 'German Federal Ministry for Economic Affairs and Energy', 'Alzheimer Forschung Initiative e.V.', 'Spar Nord Foundation' + Add "GOLD" enumeration to em_support_film.material + Add "FEI Falcon IV (4k X 4k)" to _em_image_recording.film_or_detector_model + Add "JADAS" and "crYOLO" to em_software.name + Add _pdbx_branch_scheme.pdb_ins_code + Remove local contet from _pdbx_database_status.status_code_nmr_data</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.332</td> <td class="my-monospace">2020-03-03</td> <td class="my-monospace"> Changes (pkeller/ep): + Changes to pdbx_refine_tls_group to enforce consistency between TLS group definitions and structure: Make the following items children of the corresponding items in atom_site: _pdbx_refine_tls_group.beg_auth_asym_id, _pdbx_refine_tls_group.beg_auth_seq_id, _pdbx_refine_tls_group.end_label_asym_id, _pdbx_refine_tls_group.end_auth_seq_id Add new items _pdbx_refine_tls_group.beg_PDB_ins_code, _pdbx_refine_tls_group.end_PDB_ins_code + Add _atom_type.pdbx_scat_Cromer_Mann_a6 and _atom_type.pdbx_scat_Cromer_Mann_b6 + Add PDBC to examples/enumerations for _pdbx_database_status.deposit_site, _pdbx_database_status.process_site, pdbx_chem_comp_audit.processing_site, _chem_comp.pdbx_processing_site, _pdbx_prd_audit.processing_site, pdbx_family_prd_audit.processing_site, em_admin.deposition_site, _pdbx_chem_comp_model_audit.processing_site, _emd_admin.deposition_site + Set upper limit for _refine.ls_R_factor_obs, refine.ls_R_factor_R_free, refine.ls_R_factor_R_work to 1.0 + Change hard limits to soft for _em_imaging.accelerating_voltage + Extend pdbx_audit_support enumeration + Add CoMAND to _pdbx_nmr_software.name enumeration + Make _pdbx_reference_entity_sequence.type and _pdbx_reference_entity_list.type into enumerations.</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.331</td> <td class="my-monospace">2020-02-04</td> <td class="my-monospace"> Changes (ep): + Add "branched" to pdbx_reference_molecule.represent_as + Add 'HITACHI H3000 UHVEM' to _em_imaging.microscope_model + Extend pdbx_audit_support enumeration</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.330</td> <td class="my-monospace">2020-01-26</td> <td class="my-monospace"> Changes (ep): + Add _pdbx_chem_comp_synoyms.ordinal as key for category (make mandatory) + Extend deposition enumeration for pdbx_database_related to include 'split' and 'complete structure' + Extend pdbx_nmr_software.name (I-PINE) + Limit _reflns.pdc_Rrim_I_all to be less than 5 + Extend pdbx_audit_support enumeration + Add 'ICON' and 'ISOLDE' to _em_software.name and _emd_software.name enumeration. Remove duplicate 'CryoSPARC' + Improve description of _em_buffer.pH + Add 'NICKEL/TITANIUM' to _em_sample_support.grid_material and _emd_grid.material + Create deposition enumeration for _emd_specialist_optics.phase_plate and _em_imaging_optics.phase_plate + Add GOLD to emd_support_film.material</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.329</td> <td class="my-monospace">2019-12-18</td> <td class="my-monospace"> Changes (ep): + Extend _diffrn_detector.type enumeration to include BIX-3, BIX-4 and iBIX + Add _pdbx_chem_comp_synoyms.ordinal as future key</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.328</td> <td class="my-monospace">2019-11-26</td> <td class="my-monospace"> Changes (ep): + Extend _pdbx_audit_support.funding_organization + Add alpha and beta linking D/L saccharide to _chem_comp.type + Add 'CONDENSED IUPAC CARBOHYDRATE SYMBOL','IUPAC CARBOHYDRATE SYMBOL' 'SNFG CARBOHYDRATE SYMBOL' to _pdbx_chem_comp_identifier.type + Corrected example for pdbx_entity_branch_link + Add 'CARBOHYDRATE ANOMER', 'CARBOHYDRATE ISOMER', 'CARBOHYDRATE RING' to examples for pdbx_chem_comp_feature.type</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.327</td> <td class="my-monospace">2019-11-12</td> <td class="my-monospace"> Changes (ep): + Extend pdbx_database_status to include nmr_data contents. + Reorganize _pdbx_audit_support.funding_organization such that details will include the country. + Extend em_software.name to include ERRASER + Set upper limit for _diffrn.ambient_temp to 450 + Add TFA to _pdbx_nmr_chem_shift_ref.mol_common_name. Add fluorine to _pdbx_nmr_chem_shift_ref.atom_group + Add 'TFS TAOLS' to _em_imaging.microscope_model + Correct soft limits for _reflns.percent_possible_obs + Make _struct_keywords.pdbx_keywords mandatory for deposition + Add soft limits for _reflns.pdbx_CC_half</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.326</td> <td class="my-monospace">2019-10-28</td> <td class="my-monospace"> Changes (ep): + Remove duplicate enumerations from _diffrn_detector.type + Correct deposition_email type name</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.325</td> <td class="my-monospace">2019-10-21</td> <td class="my-monospace"> Changes (ep): + Add newer DECTRIS EIGER detectors to _diffrn_detector.type + Extend _pdbx_audit_support.funding_organiation enumerations + _em_imaging.specimen_holder_model and _emd_microscopy.specimen_holder_model add 'GATAN ELSA 698 SINGLE TILT LIQUID NITROGEN CRYO TRANSFER HOLDER' and 'FISCHIONE 2550' to enumeration + _em_imaging.microscope_model and _emd_microscopy.microscope add 'TFS GLACIOS' and 'TFS KRIOS' to enumeration.</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.324</td> <td class="my-monospace">2019-10-10</td> <td class="my-monospace"> Changes (ep): + Adjust range limits for _reflns.pdbx_CC_star, _reflns_shell.pdbx_CC_star + Adjust range limits for _reflns.pdbx_R_split, _reflns_shell.pdbx_R_split + For deposition, set limits for _exptl_crystal_grow.temp + Not not allow 0 values during deposition for reflns_shell.Rmerge_I_all, _reflns_shell.Rmerge_I_obs, _reflns.pdbx_Rmerge_I_obs, _reflns.pdbx_Rmerge_I_all, reflns.pdbx_Rsym_value, _reflns_shell.pdbx_Rsym_value + Create internal enumeration for struct_ref_seq_dif.details + Expand _pdbx_audit_support.funding_organiation enumerations + Use a new type deposition_email for pdbx_contact_author.email</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.323</td> <td class="my-monospace">2019-09-11</td> <td class="my-monospace"> Changes (ep): + Expand _pdbx_audit_support.funding_organiation enumerations + Provide upper limit for _refine_ls_shell.R_factor_R_free + Added _pdbx_depui_status_flags.post_rel_replacement_reason_details and _pdbx_audit_revision_details.details + Update description of _atom_site.label_alt_id + Add _refine.pdbx_R_complete and _refine_ls_shell.pdbx_R_complete</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.322</td> <td class="my-monospace">2019-08-19</td> <td class="my-monospace"> Changes (ep/jmb): + Correct capitalization in _pdbx_nmr_spectrometer.model + Expand _diffrn_detector.type, _pdbx_audit_support.funding_organiation enumerations + Adjust advisory limits for _reflns.pdbx_Rrim_I_all, _reflns.pdbx_Rpim_I_all, _reflns.pdbx_R_split + Add _atom_type.pdbx_scat_Z, _atom_type.pdbx_N_electrons + Define emd_id_ci and pdb_id_ci for case insensitive id codes</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.321</td> <td class="my-monospace">2019-07-10</td> <td class="my-monospace"> Changes (ep): + Expand _diffrn_detector.type, _software.name, _pdbx_audit_support.funding_organiation enumerations + Make _pdbx_refine_tls_group.pdbx_refine_id and _pdbx_refine_tls.pdbx_refine_id mandatory</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.320</td> <td class="my-monospace">2019-06-11</td> <td class="my-monospace"> Changes (ep/jmb): + Add enumeration for _struct_conn.pdbx_role + Adjust descriptions involving country to include region. + Rename pdbx_entity_descriptor to pdbx_entity_branch_descriptor + Adjust limits of _emd_image_recording.average_electron_dose_per_image and _em_image_recording.avg_electron_dose_per_image" + Add DECTRIS EIGER2 detectors to _diffrn_detector.type + Increase high soft limit for _reflns_shell.pdbx_Rsym_value</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.319</td> <td class="my-monospace">2019-05-21</td> <td class="my-monospace"> Changes (ep/rp): + Add emd_map_upload extension + Remove local context from _pdbx_entry_details.has_ligand_of_interest + Add Fragon to software.name enumeration + Make pdbx_nmr_chem_shift_software.software_label non-mandatory</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.318</td> <td class="my-monospace">2019-05-16</td> <td class="my-monospace"> Changes (ep/jb): + Add PDB-REDO to software.name enumeration + Set upper limit for _exptl_crystal_grow.pH to 14.0 + Update examples for exptl_crystal_grow.method to match enumeration + Add newer AVANCE spectrometers to _pdbx_nmr_spectrometer.model and cleanup old partial names</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.317</td> <td class="my-monospace">2019-04-24</td> <td class="my-monospace"> Changes (ep): + Make _emd_depui.obsolete_instructions, _em_depui.obsolete_instructions, em_admin.replace_existing_entry_flag and _emd_admin.replace_existing_entry_flag non-mandatory. + Extend _pdbx_audit_support.funding_organization enumeration + Increase soft upper limit for _reflns_shell.Rmerge_I_obs + Add _pdbx_depui_status_flags.post_rel_replacement_reason + Add _pdbx_database_status.post_rel_recvd_coord_date, _pdbx_database_status.post_rel_recvd_coord, _pdbx_database_status.post_rel_status. + Create type 'id_list_spc' for an id list with spaces. Use for pdbx_struct_assembly_gen_depositor_info.chain_id_list</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.316</td> <td class="my-monospace">2019-04-11</td> <td class="my-monospace"> Changes (ep): + Add Amber to _em_software.name and _emd_software.name enumeration + Extend _pdbx_audit_support.funding_organization + Change type of _pdbx_struct_assembly_gen.asym_id_list to text</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.315</td> <td class="my-monospace">2019-04-01</td> <td class="my-monospace"> Changes (ep): + Add _pdbx_entry_details.has_ligand_of_interest flag + Add 'carbonyl carbon' to _pdbx_nmr_chem_shift_ref.atom_group enumeration + Extend _pdbx_audit_support.funding_organization + Create deposition enumeration for _pdbx_nmr_software.name</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.314</td> <td class="my-monospace">2019-03-20</td> <td class="my-monospace"> Changes (ep): + Extend _pdbx_audit_support.funding_organization + Restrict _entity.pdbx_number_of_molecules to integers + Remove polysaccharide(D) and polysaccharide(L) type from entity_poly.type + Update example for _audit_author.identifier_ORCID and _citation_author.identifier_ORCID with an invalid checksum + Add "LaB6 thermoionic" to _diffrn_source.type enumeration + Add emClairity to em_software.name and emd_software.name enumeration + Change lower limit for _refine.ls_d_res_low, _refine_ls_shell.d_res_low, _refine_ls_shell.d_res_high to not include 0.0 + Remove enumerations from _struct_conn.pdbx_role, _struct_conn.ptnr1_role, _struct_conn.ptnr2_role</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.313</td> <td class="my-monospace">2019-02-03</td> <td class="my-monospace"> Changes (ep): + Revert change for _refine.pdbx_starting_model being mandatory in deposition + Add enumeration for struct_conn.conn_type_id + Extend _pdbx_audit_support.funding_organization with KU Leuven and Lundbeckfonden</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.312</td> <td class="my-monospace">2019-01-29</td> <td class="my-monospace"> Changes (ep): + Adjust contexts for _pdbx_chem_comp_audit.annotator and _pdbx_chem_comp_audit.details and chem_comp-extension. + Extend _pdbx_audit_support.funding_organization enumeration + Set maximum for _em_imaging.accelerating_voltage to 400 + Require _reflns.pdbx_number_measured_all to be positive + For deposition, make _refine.pdbx_method_to_determine_struct, _refine.pdbx_starting_model, _reflns_shell.number_unique_obs mandatory + Add 'Excillum MetalJet D2 70 kV' and 'ELETTRA BEAMLINE 11.2C to _diffrn_source.type enumeration + Change _em_3d_fitting_list.pdb_chain_id type to asym_id</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.311</td> <td class="my-monospace">2018-12-10</td> <td class="my-monospace"> Changes (ep): + Extend chem_comp-extension by adding _pdbx_chem_comp_synonyms.type and _chem_comp_atom.pdbx_stnd_atom_id</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.310</td> <td class="my-monospace">2018-12-03</td> <td class="my-monospace"> Changes (ep): + Change ec-type to support new enzyme classifications + Add TRANSLOCASE to _struct_keywords.pdbx_keywords enumeration</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.309</td> <td class="my-monospace">2018-11-09</td> <td class="my-monospace"> + Add various em_* categories to em_group + Add 'Science and Technology Funding Council' and 'Global Challenges Research Fund' to _pdbx_audit_support.funding_organization + _pdbx_audit_support.funding_organization mandatory for deposition + _em_imaging.c2_aperture_diameter units changed to microns and lower limit changed to 1 + _pdbx_nmr_chem_shift_ref.mol_common_name add glucose to enumeration</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.308</td> <td class="my-monospace">2018-11-08</td> <td class="my-monospace"> Changes (ep): + Add Buccaneer to _em_software.name/_emd_software.name enumeration + Add enumeration to _pdbx_prd_audit.processing_site + Add CHESS BEAMLINE G3, PAL-XFEL BEAMLINE NCI beamlines + Add Rigaku HyPic-6000HE detector + Add newer AVANCE spectrometers to _pdbx_nmr_spectrometer.model + Adjust limits for _refine.ls_d_res_high to not include 0 + Remove use of non_negative_int as regular expression incorrect + Add citation_doi and exp_data_doi for use in citation and pdbx_related_exp_data_set</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.307</td> <td class="my-monospace">2018-10-15</td> <td class="my-monospace"> Changes (ep/jmb): + Correct examples for _pdbx_related_exp_data_set + _diffrn_detector.type correct type for 'BRUKER PHOTON 100' + Extend audit content types to support 'Chemical component' + Add cisTEM and Toaz to em_software.name and emd_software.name + Update _pdbx_audit_support.funding_organization enumeration</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.306</td> <td class="my-monospace">2018-09-04</td> <td class="my-monospace"> Changes (ep): + Correct _diffrn_source.type enumeration for 'MICROMAX-003' + Extend _pdbx_audit_support.funding_organization enumeration + Add Diamond beamlines VMXi and VMXm to _diffrn_source.type + Add "Gorgon" and "Pathwalking" to _em_software.name and _emd_software.name</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.305</td> <td class="my-monospace">2018-08-16</td> <td class="my-monospace"> Changes (ep): + Update entity_branch_extension + Update limits of pdbx_serial_crystallography_sample_delivery_injection.injector_temperature</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.304</td> <td class="my-monospace">2018-08-01</td> <td class="my-monospace"> Changes (ep): + Extend _pdbx_audit_support.funding_organization enumeration + Correct _emd_software.emd_microscopy_id parent relationship + Update entity_branch_extension</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.303</td> <td class="my-monospace">2018-07-23</td> <td class="my-monospace"> Changes (ep): + Extend _software.language enumeration + Extend _pdbx_audit_support.funding_organization enumeration + Add COUNTER-DIFFUSION to deposition enumeration for _exptl_crystal_grow.method + Add 'JEOL CRYOSPECPORTER' to _em_imaging.specimen_holder_model and _emd_microscopy.specimen_holder_model enumerations + Extend deposition enumerations for _software.name + Add range limits to xfel extension + Require _atom_site.pdbx_PDB_model_num non-zero positive integer + For deposition, require _pdbx_nmr_representative.conformer_id to be positive integer</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.302</td> <td class="my-monospace">2018-07-03</td> <td class="my-monospace"> Changes (ep): + Update xfel extension to v3</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.301</td> <td class="my-monospace">2018-06-25</td> <td class="my-monospace"> Changes (ep): + Update point_group regular expression type + Add beamline 'SACLA BEAMLINE BL2' and 'APS BEAMLINE 34-ID' to _diffrn_source.type enumeration + Change context of _citation_author.identifier_ORCID to make public + Extend enumerations with _pdbx_audit_support.funding_organization + Provide deposition specific help text for _pdbx_nmr_representative.conformer_id + Make _pdbx_contact_author.identifier_ORCID mandatory during deposition</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.300</td> <td class="my-monospace">2018-06-07</td> <td class="my-monospace"> Changes (ep): + Update pdbx_deposit_group.group_type enumeration + Extend ranges to match EMDB schema for em_imaging.calibrated_defocus_max, _emd_microscopy.calibrated_defocus_max, _em_start_model.random_conical_tilt_angle, _emd_startup_model.random_conical_tilt_angle, _emd_microscopy.nominal_cs, _em_imaging.nominal_cs + Change units for emd_fiducial_markers.diameter and _em_fiducial_markers.diameter + Change units, range, and mandatory flag for _em_focused_ion_beam.dose_rate + Add 'JEOL 3100FEF' to em_imaging.microscope_model and emd_microscopy.microscope</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.299</td> <td class="my-monospace">2018-05-12</td> <td class="my-monospace"> Changes (ep): + Update pdbx_item_enumeration.detail for _pdbx_nmr_spectrometer.model + Extend enumeration for _pdbx_audit_support.funding_organization</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.298</td> <td class="my-monospace">2018-04-17</td> <td class="my-monospace"> Changes (ep): + Allow any number of digits for emd_id + Add "PSI JUNGFRAU 1M" to diffn_detector.type enumeration + Add pdbx_depui_status_flags.merged_fail</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.297</td> <td class="my-monospace">2018-03-22</td> <td class="my-monospace"> Changes (ep): + Add "MAXIMUM LIKELIHOOD" to _emd_angle_assignment.type and _emd_angle_assignment.type enumeration + Extend range for _em_image_recording.average_exposure_time and _emd_image_recording.average_exposure_time + Update diffrn_source category deposition related enumerations</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.296</td> <td class="my-monospace">2018-03-06</td> <td class="my-monospace"> Changes (ep): + Ensure _diffrn_detector.type, _diffrn_source.pdbx_synchrotron_beamline, _diffrn_source.pdbx_synchrotron_site enumerations complete + Extend _pdbx_audit_support.funding_organization enumeration + Add RNA-Puzzles to _pdbx_database_status.methods_development_category enumeration + Add _pdbx_audit_support.details</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.295</td> <td class="my-monospace">2018-02-07</td> <td class="my-monospace"> Changes (ep): + Add SIMBAD to _software.name enumeration + Add 'Sculptor', 'SUPER' and 'FOCUS' to em_software.name and _emd_software.name enumerations + Extend _pdbx_audit_support.funding_organization enumeration + Extend _pdbx_struct_assembly_auth_evidence_depositor_info.experimental_support enumeration + Change data type for _emd_specialist_optics.energyfilter_upper and _emd_specialist_optics.energyfilter_lower to float from text + Remove 4x3_matrix and implement 3x4_matrices + Add enumeration for _pdbx_deposit_group.group_type + Add _em_imaging_optics.energyfilter_slit_width and _emd_specialist_optics.energyfilter_slit_width. + Switch to closed enumeration for _pdbx_audit_support.funding_organization. + Change type of _pdbx_depui_validation_status_flags.adp_outliers_zero to text</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.294</td> <td class="my-monospace">2018-01-11</td> <td class="my-monospace"> Changes (ep): + Add "SLAC LCLS BEAMLINE AMO" to _diffrn_source.type, add "AMO" to _diffrn_source.pdbx_synchrotron_breamline to deposition enumerations. + Correct _diffrn_source.type for "BRUKER D8 QUEST" - is a SEALED TUBE. + Update/add range limits for _emd_microscopy.nominal_defocus_max, _emd_microscopy.nominal_defocus_min, _em_imaging.nominal_defocus_max, _em_imaging.nominal_defocus_min, _emd_image_recording.average_exposure_time, _em_image_recording.average_exposure_time, _emd_microscopy.nominal_magnification, _em_imaging.nominal_magnification, _em_focused_ion_beam.initial_thickness, _emd_sectioning_focused_ion_beam.initial_thickness, _em_focused_ion_beam.current, _emd_sectioning_focused_ion_beam.current, _em_imaging.nominal_cs, _em_imaging.c2_aperature_diameter, _em_imaging.calibrated_defocus_max, _emd_microscopy.nominal_cs, _emd_microscopy.c2_aperature_diameter, _emd_microscopy.calibrated_defocus_max. + Add 'ISOLDE" to enumeration for _software.name + Add "JEOL CRYO ARM 200" and "JEOL CRYO ARM 300" to _emd_microscopy.microscope and _em_imaging.microscope_model + Improve date_dep regular expression to prevent zero dates + Extend _pdbx_audit_support.funding_organization enumeration + Add 'HOLD FOR 8 WEEKS' to enumeration pdbx_database_status.dep_release_code_struct_fact + Add 'Bruker PHOTON III' and correct type of 'Bruker PHOTON II' in _diffrn_detector.type enumeration. + Add 'GRAPHENE OXIDE' to _em_sample_support.grid_material enumeration</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.293</td> <td class="my-monospace">2017-11-27</td> <td class="my-monospace"> Changes (ep/ar/cl): + Correct spelling errors in category_group_list.description + Add item_sub_category.id for TLS definitions in pdbx_refine_tls + Add _citation_author.identifier_ORCID with WWPDB_LOCAL context + Add SPOTITON to em_virtification.instrument/emd_vitrification.instrument enumeration + Add GATAN K3 detectors to _emd_image_recording.film_or_detector_model and _em_image_recording.film_or_detector_model enumeration + Add 'GIF Bioquantum' to _em_imaging_optics.energyfilter_name and _emd_specialist_optics.energyfilter_name enumeration + Update deposition description for citation_author.name + Add SwissFEL and PAL-XFEL enumerations to diffrn_source category enumerations + Set maximum of 30 seconds for _em_image_recording.average_exposure_time and _emd_image_recording.average_exposure_time + Add 'HOLD FOR 4 WEEKS' to enumeration pdbx_database_status.dep_release_code_struct_fact</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.292</td> <td class="my-monospace">2017-10-18</td> <td class="my-monospace"> Changes (ep/jmb): + Add _pdbx_depui_validation_status_flags.tls_no_aniso to flag TLS records without anisotropic ones during deposition + Add _pdbx_depui_validation_status_flags.adp_outliers_zero to flag zero B factors during deposition + Update _pdbx_audit_support.funding_organization enumeration + Add European XFEL site and beamlines to diffrn_source.type, diffrn_source.pdbx_synchrotron_beamline and diffrn_source.pdbx_synchrotron_site + pdbx_database_related.db_name deposition enumeration extended to include matching content_type context. + Add upper range limit for reflns.percent_possible_obs and reflns_shell.percent_possible_obs + Require reflns.pdbx_R_split and reflns_shell.pdbx_R_split to be positive and create advisory limits for deposition. + Add 'LIQUID ANODE' to Deposition enumeration for diffrn_source.source. Change METALJET generators in diffrn_source.type to match. + Extend enumeration for pdbx_struct_assembly_auth_evidence.experimental_support</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.291</td> <td class="my-monospace">2017-09-10</td> <td class="my-monospace"> Changes (ep): + Add 'RMVD' to enumeration for pdbx_database_status.status_code, pdbx_database_status.status_code_sf, pdbx_database_status.status_code_mr, pdbx_database_status.status_code_cs + Add enumeration for emd_grid.model and em_sample_support.grid_type + Add enumeration for em_imaging_optics.energyfilter_name and emd_specialist_optics.energyfilter_name + Correct capitalization of BRUKER METALJET in diffrn_source.type + Add entity_branch_extension to dictionary (adds pdbx_entity_branch_link, pdbx_entity_branch_list and adds to entity.type)</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.290</td> <td class="my-monospace">2017-08-30</td> <td class="my-monospace"> Changes (ep): + Add 'FISCHIONE INSTRUMENTS DUAL AXIS TOMOGRAPHY HOLDER' to emd_microscopy.specimen_holder_model and em_imaging.specimen_holder_model enumerations + Add soft and hard limits for reflns.pdbx_Rrim_I_all, reflns_shell.pdbx_Rrim_I_all, reflns.pdbx_Rpim_I_all, reflns_shell.pdbx_Rpim_I_all, reflns_shell.pdbx_Rrim_I_all_anomalous, reflns_shell.pdbx_Rpim_I_all_anomalous, reflns.pdbx_Rrim_I_all_anomalous, reflns.pdbx_Rpim_I_all_anomalous + Add DepUI enumeration for em_software.name and emd_software.name + Make pdbx_struct_assembly_auth_evidence.details and pdbx_struct_assembly_depositor_info.details mandatory at deposition + Update enumeration for _pdbx_audit_support.funding_organization + Add _pdbx_deposit_group.group_type + Remove ESRF BEAMLINE ID30A from diffrn_source.type + Update software.name enumeration with role software used (for deposition)</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.289</td> <td class="my-monospace">2017-08-03</td> <td class="my-monospace"> Changes (ep): + Reintegrate duplicate save frames + Add 'PDB_ACC' to database_2.database_id enumeration + Correct type for pdbx_nmr_exptl_sample.concentration_units to match enumeration + Add MCMR (Midwest Center for Macromolecular Research) to pdbx_SG_project.initial_of_center and pdbx_SG_project.full_name_of_center</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.288</td> <td class="my-monospace">2017-07-17</td> <td class="my-monospace"> Changes (Pdbx/mmCIF Working Group): + replace items names d_resolution_* with d_limit_* and update related definitions. + add item _pdbx_diffrn_merge_rejected_list.details + add items _pdbx_diffrn_merge_image_list.image_id_begin and _pdbx_diffrn_merge_image_list.image_id_end + add items _pdbx_diffrn_unmerged_cell.Bravais_lattice + add items _pdbx_diffrn_unmerged_refln.scan_id and _pdbx_diffrn_unmerged_refln.scale_value + add category pdbx_diffrn_scan</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.287</td> <td class="my-monospace">2017-07-16</td> <td class="my-monospace"> Changes (jw/ns): + Correct enumeration in _pdbx_diffrn_data_section_contents.content_type + Changed _pdbx_xfel_data_reduction.frames_hits to _pdbx_xfel_data_reduction.frame_hits. + Add _pdbx_xfel_data_reduction.crystal_hits, _pdbx_xfel_data_reduction.droplet_hits, and _pdbx_xfel_data_reduction.lattices_indexed</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.286</td> <td class="my-monospace">2017-07-12</td> <td class="my-monospace"> Changes (jw): + _pdbx_diffrn_data_section.type_scaled correct enumeration + Remove range limits for _pdbx_diffrn_image_proc.phi_value + Rename _pdbx_xfel_sample_delivery_injection.type to _pdbx_xfel_sample_delivery_injection.description + Change type of _pdbx_xfel_detector.detector from 'code' to 'line'</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.285</td> <td class="my-monospace">2017-07-08</td> <td class="my-monospace"> Changes (ep): + Extend deposition enumeration for _pdbx_audit_support.funding_organization + For em_ related categories, set context based on public V50 + Add 'carbohydrate dihedral angle' to _pdbx_nmr_constraint_file.constraint_type + Extend soft limit range for em_image_recording.avg_electron_dose_per_image/ emd_image_recording.average_electron_dose_per_image + Set pdbx_depui_status_flags.is_grant_funded mandatory for deposition</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.284</td> <td class="my-monospace">2017-07-01</td> <td class="my-monospace"> Changes (ep): + Add pdbx_depui_status_flags.use_sas_refine + Extend deposition enumeration of software.name</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.283</td> <td class="my-monospace">2017-06-27</td> <td class="my-monospace"> Changes (ep): + Change type for pdbx_database_status.recvd_initial_deposition_date to yyyy-mm-dd from yyyy-mm-dd:hh:mm for xsd type checking + Add 'FEI FALCON III (4k x 4k)' to enumeration for em/emd_image_recording.film_or_detector_model + Correct type of source for deposition for 'Xenocs GeniX 3D Cu HF' in diffrn_source.type enumeration</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.282</td> <td class="my-monospace">2017-06-19</td> <td class="my-monospace"> Changes (ep): + Add depositon specific open enumeration for _pdbx_audit_support.funding_organization</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.281</td> <td class="my-monospace">2017-05-29</td> <td class="my-monospace"> Changes (ep): + Add depositon specific enumerations for diffrn_detector.pdbx_collection_date and entity_poly.pdbx_seq_one_letter_code. + Make pdbx_depui_status_flags.has_viewed_validation_report mandatory for deposition + Add pdbx_contact_author.legacy_address to replace audit_contact_author.address. + Correct enumerations for deposition _diffrn_source.pdbx_synchrotron_site (MAX II, MAX IV) + Add beamlines 'PAL/PLS BEAMLINE 6D', 'ILL BEAMLINE LADI', 'ILL BEAMLINE LADI III' to deposition diffrn_source.type</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.280</td> <td class="my-monospace">2017-05-18</td> <td class="my-monospace"> Changes (ep): + Add pdbx_supporting_exp_data_set category + Add _pdbx_depui_status_flags.has_sas_data and _pdbx_depui_status_flags.is_sas_deposited + Add NSLS-II and MAX_IV synchrotrons to deposition enumeration lists + Extend software.name enumeration list for deposition system. + Add BIOISIS to pdbx_database_release.db_name enumeration list. + Add regular expression for author names (audit_author.name, citation_author.name) for deposition system + Make deposition taxonomy mandatory (_entity_src_nat.pdbx_ncbi_taxonomy_id, _pdbx_entity_src_syn.ncbi_taxonomy_id, _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id, _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id) + Add detector types and scattering types to deposition enumerations for diffrn_detector.type and diffrn_source.source</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.279</td> <td class="my-monospace">2017-04-20</td> <td class="my-monospace"> Changes (ep): + Add 'Data processing' to _pdbx_audit_revision_group.group enumeration + Add 'Obsolete' to _pdbx_audit_revision_details.type + Change enumeration in _emd_map.endian_type and _em_map.endian_type from 'small' to 'little'</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.278</td> <td class="my-monospace">2017-04-18</td> <td class="my-monospace"> Changes (ep): + Add WWPDB_LOCAL context for entry.pdbx_DOI + Add 'Direct Drive' to _pdbx_nmr_spectrometer.model deposition enumeration + For v50: Mark as WWPDB_LOCAL context for database_PDB_rev and database_PDB_rev_record</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.277</td> <td class="my-monospace">2017-04-08</td> <td class="my-monospace"> Changes (ep): + For v50: correct WWPDB_LOCAL context for _pdbx_database_status.date_begin_release_preparation, and remove context for _pdbx_database_status.status_code_cs</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.276</td> <td class="my-monospace">2017-04-06</td> <td class="my-monospace"> Changes (ep/mrs): + Correct capitalization of enumerations in pdbx_contact_author.contry and pdbx_audit_support.country. + Correct capitalization of enumerations of _ pdbx_SG_project.full_name_of_center + Update archive enumerations for pdbx_nmr_exptl_sample.concentration_units to match deposition enumeration + For deprecated em_* categories, in which a forward reference is provided to new item in dictonary, provide the reverse mapping as well. + For v5rc: For deprecated computing category provide forward references to software category + For v5rc: export _pdbx_database_status.recvd_initial_deposition_date and indicate replaces database_PDB_rev.date_original + For v5rc: remove pdbx_binding_assay category + Extend enumeration for _pdbx_nmr_constraint_file.constraint_subtype ('PRE', 'PRE solvent', 'CSP') + For v5rc: For deprecated pdbx_version category provide replacement items names</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.275</td> <td class="my-monospace">2017-03-28</td> <td class="my-monospace"> Changes (ep/mg): + Move 'Bruker METLJET' from diffrn_detector.type enumeration to diffrn_source.type + Change 'SSRF BEAMLINE BL17U' ine diffrn_source.type enumerate to 'SSRF BEAMLINE BL17U1' + Add 'Agrovata', 'DIMPLE', 'SHELXL-97' to software.name deposition enumeration</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.274</td> <td class="my-monospace">2017-03-20</td> <td class="my-monospace"> Changes (ep): + For v5rc: Remove category context for database_PDB_rev and database_PDB_rev_record + Add 'Force Field X' to deposition enumeration for software.name</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.273</td> <td class="my-monospace">2017-03-20</td> <td class="my-monospace"> Changes (ep): + For v5rc: Set category context to WWPDB_LOCAL for computing + For v5rc: Remove context on the following due to existing data in archive _atom_site.Cartn_x_esd, _atom_site.Cartn_y_esd, _atom_site.Cartn_z_esd, _atom_site.occupancy_esd, _atom_site.B_iso_or_equiv_esd, _atom_site_anisotrop.U[1][1]_esd, _atom_site_anisotrop.U[2][2]_esd, _atom_site_anisotrop.U[3][3]_esd, _atom_site_anisotrop.U[1][2]_esd, _atom_site_anisotrop.U[1][3]_esd, _atom_site_anisotrop.U[2][3]_esd + Add 'Bruker METALJET' to _diffrn_detector.type enumeration + Flag _pdbx_audit_revision_details.type as mandatory for deposition. + Add _pdbx_crystal_alignment.ybeam_esd + Make _refine_B_iso.pdbx_residue_num, _refine_B_iso.pdbx_strand, _refine_B_iso.pdbx_residue_name non-mandatory + Correct examples for pdbx_audit_revision_history and pdbx_audit_revision_group + Update enumeration for _pdbx_audit_revision_group.group + Create/update examples for emd_molecular_mass, emd_vitrification, emd_angle_assignment, emd_particle, emd_volume, emd_modelling_initial_model</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.272</td> <td class="my-monospace">2017-03-14</td> <td class="my-monospace"> Changes (ep): + For v5rc: Set category context to WWPDB_LOCAL for pdbx_version, database_PDB_rev and database_PDB_rev_record + Add ssbond to enumeration for pdbx_data_processing_status.status + Set WWPDB_LOCAL context for em_2d_crystal_entity.c_sampling_length in v5_next but not v5rc.</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.271</td> <td class="my-monospace">2017-03-09</td> <td class="my-monospace"> Changes (ep): + Add category group assignments for pdbx_unobs_or_zero_occ_residues, pdbx_unobs_or_zero_occ_atoms, pdbx_struct_mod_residue, pdbx_distant_solvent_atoms, _pdbx_struct_special_symmetry, pdbx_pdb_compnd, pdbx_pdb_source + Update context values to WWPDB_LOCAL for pdbx_remediation_atom_site_mapping + Parent for _pdbx_remediation_atom_site_mapping.auth_alt_id removed. + Add MIRAS, SIR to deposition enumeration for _refine.pdbx_method_to_determine_struct + Change type for pdbx_hybrid.residue_names to line based on usage + Add category keys for pdbx_source and pdbx_refine_ls_restr_ncs + To support data from pdb_extract, added pdbx_crystal_alignment category and updates to exisitin pdbx_phasing_MR, reflns_shell, reflns categories + For 4x3 matrix - require space between columns + Add new categories to support versioning: pdbx_audit_revision_history, pdbx_audit_revision_category, pdbx_audit_revision_group, pdbx_audit_revision_item, pdbx_audit_revision_details + For v5rc: Set item context on the following to WWPDB_LOCAL: _atom_site.Cartn_x_esd, _atom_site.Cartn_y_esd, _atom_site.Cartn_z_esd, _atom_site.occupancy_esd, _atom_site.B_iso_or_equiv_esd, _atom_site_anisotrop.U[1][1]_esd, _atom_site_anisotrop.U[2][2]_esd, _atom_site_anisotrop.U[3][3]_esd, _atom_site_anisotrop.U[1][2]_esd, _atom_site_anisotrop.U[1][3]_esd, _atom_site_anisotrop.U[2][3]_esd</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.270</td> <td class="my-monospace">2017-03-01</td> <td class="my-monospace"> Changes (ep): + Update pdbx_struct_assembly_auth_evidence_depositor_info.experimental_support enumeration to include 'immunoprecipitation'</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.269</td> <td class="my-monospace">2017-02-27</td> <td class="my-monospace"> Changes (ep): + Add STARANISO to deposition software.name enumeration list + Add NSRRC BEAMLINE TPS 05A synchrotron beamline to diffrn.source.type + Update deposition example for refins.pdbx_starting_model + Add "MAATEL BIODIFF" to diffrn_detector.type + Update pdbx_struct_assembly_auth_evidence.experimental_support enumeration to include 'immunoprecipitation'</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.268</td> <td class="my-monospace">2017-02-17</td> <td class="my-monospace"> Changes (ep): + Add internal pdbx_binding_assay.auth_comp_id + Provide limits for pdbx_binding_assay.assay_pH and pdbx_binding_assay.assay_temperature + Make pdbx_binding_assay.assay_type, pdbx_binding_assay.assay_value and pdbx_binding_assay.assay_value_type non-mandatory</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.267</td> <td class="my-monospace">2017-02-15</td> <td class="my-monospace"> Changes (ep): + Export pdbx_entity_instance_feature to public in v5rc + For pdbx_entity_instance_feature.comp_id change parent to atom_site.label_comp_id + Add parent atom_site.auth_comp_id to pdbx_entity_instance_feature.auth_comp_id</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.266</td> <td class="my-monospace">2017-02-11</td> <td class="my-monospace"> Changes (ep): + For 4x3_matrix - allow spaces at start of row + add pdbx_struct_assembly_auth_evidence_depositor_info. Change parent of pdbx_struct_assembly_gen_depositor_info to pdbx_struct_assembly_depositor_info + export pdbx_binding_assay to public in v5rc</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.265</td> <td class="my-monospace">2017-02-05</td> <td class="my-monospace"> Changes (ep): + Add BRUKER TURBO X-RAY SOURCE and OXFORD DIFFRACTION NOVA to list of X-ray sources for deposition system. + Define 4x3_matrix, id_list, symmetry_operation as regular expressions for use in deposition system to validate pdbx_struct_assembly_gen_depositor_info + Add pdbx_struct_assembly_gen_depositor_info.symmetry_operation</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.264</td> <td class="my-monospace">2017-01-05</td> <td class="my-monospace"> Changes (ep/M. Hekkelman): + Change _pdbx_struct_assembly_gen_depositor_info.chain_id_list non-mandatory + Correct inconsistent mandatory setting for _atom_site.label_alt_id, _atom_site.label_comp_id, _atom_site.label_atom_id, _diffrn_refln.wavelength_id, _atom_site.label_entity_id, _atom_site.label_seq_id, _refln.wavelength_id, _atom_site.label_asym_id, _struct_conn.ptnr1_label_atom_id, _struct_conn.ptnr2_label_atom_id, _struct_mon_prot_cis.label_alt_id, _struct_site_gen.label_alt_id + Split up pdbx_struct_assembly_auth_evidence into pdbx_struct_assembly_auth_classification. Export categories to v5rc + Make _pdbx_struct_assembly_gen_depositor_info.chain_id_list, _pdbx_struct_assembly_gen_depositor_info.full_matrices, _pdbx_struct_assembly_gen_depositor_info.at_unit_matrix, non-mandatory for archive, but mandatory depui + Make pdbx_nmr_refine.software_ordinal a key for category internally + Add adamantane to _pdbx_nmr_chem_shift_ref.mol_common_name enumeration</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.263</td> <td class="my-monospace">2017-01-03</td> <td class="my-monospace"> Changes (jw/ep): + add units micrometres, micrometres_squared, teraphotons_per_pulse, kiloelectron_volts, microjoules, hertz, femtoseconds, microliters_per_min + add category group xfel_group + incorporate draft xfel dictionary extension + incorporate draft diffraction data extension and supporting category group + Add _pdbx_struct_assembly_gen_depositor_info.all_chains</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.262</td> <td class="my-monospace">2016-12-19</td> <td class="my-monospace"> Changes (ep/jb): + Update pdbx_struct_assembly_gen_depositor_info category for better support of assemblies. + Add pdbx_entity_instance_feature.auth_seq_num and auth_comp_id + Add DECTRIS EIGER X 500K to diffrn_detector.type + Add "FRM II BEAMLINE BIODIFF" to diffrn_source.type + Remove context for audit_author.identifier_ORCID + Item context added for audit_author.address</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.261</td> <td class="my-monospace">2016-12-06</td> <td class="my-monospace"> Changes (ep/esg/cl): + Allow 0.0 in range for emd_crystallography_stats.overall_phase_error + emd_recombinant_expression.plasmid: make non-mandatory + Reclassify the category_group for em_ categories + Add pdbx_biocurator_comment and pdbx_depositor_comment</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.260</td> <td class="my-monospace">2016-11-30</td> <td class="my-monospace"> Changes (jdw): + Add item _audit_author.identifier_ORCID + Add category pdbx_entity_instance_feature</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.259</td> <td class="my-monospace">2016-11-30</td> <td class="my-monospace"> Changes (ep): + Allow 0.0 in range for em_diffraction_stats.overall_phase_error + _em_entity_assembly_recombinant.plasmid: make non-mandatory + Flag _em_helical_entity, em_helical_entity.hand, _em_single_particle_entity, _em_virus_entity.ictvdb_id, as deprecated in V5RC and provide forward reference possible.</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.258</td> <td class="my-monospace">2016-11-29</td> <td class="my-monospace"> Changes (ep): + Add missing detectors to em_image_recording.file_or_detector_model + Add HITACHI EF3000 to em_imaging.microscope_model + For deprecated em_* categories, change context to WWPDB_DEPRECATED and provide mapping to replacement</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.257</td> <td class="my-monospace">2016-11-22</td> <td class="my-monospace"> Changes (ep): + struct_keywords.pdbx_keywords add documented enumerations + pdbx_released_exp_data_set.data_set_type add EMPIAR + diffrn_detector.type: Add Bruker PHOTON II, TVIPS TEMCAM-F416 + diffrn_source.type add Excillum MetalJet sealed tube generators + pdbx_data_processing_status.task_name: update examples and provide annotation enumeration + make pdbx_nmr_refine.software_ordinal a key for category + em_entity_assembly_molwt: Make units and value non-mandatory</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.256</td> <td class="my-monospace">2016-10-18</td> <td class="my-monospace"> Changes (ep): + em_vitrification.instrument add ZEISS PLUNGE FREEZER CRYOBOX + Add em_3d_reconstruction/emd_final_reconstruction refinement_type attribute to replace fsc_type. + _emd_admin.hold_expiry_date renamed _emd_admin.map_hold_date</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.255</td> <td class="my-monospace">2016-09-28</td> <td class="my-monospace"> Changes (ep): + Add range limits for reflns.pdbx_CC_half and reflns_shell.pdbx_CC_half + Add pdbx_deposit_group.group_title and pdbx_deposit_group.group_description + emd_microscopy.microscope add FEI/PHILIPS CM10 + em_imaging.microscope_model add FEI/PHILIPS CM10, JEOL 100B, SIEMENS SULEIKA + Enhanced EM extension dictionary + Add_ndb_struct_na_base_pair.propel as alias for _ndb_struct_na_base_pair.propeller</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.254</td> <td class="my-monospace">2016-09-19</td> <td class="my-monospace"> Changes (ep): + Extend enumeration for pdbx_nmr_chem_shift_ref.mol_common_name to include 'methionine' and 'deuterium oxide' + Add SLAC sector MFX + Correct example for pdbx_reference_linked_entity_link + Enhanced EM extension dictionary</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.253</td> <td class="my-monospace">2016-08-26</td> <td class="my-monospace"> Changes (ep): + Add enumeration for emd_map.contour_level_source and em_map.contour_level_source</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.252</td> <td class="my-monospace">2016-07-27</td> <td class="my-monospace"> Changes (ep): + emd_virus_shell.triangulation and _em_virus_shell.triangulation, changle value to positive integer + Add DECTRIS PILATUS3 R CdTe detectors to diffrn_detector.type</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.251</td> <td class="my-monospace">2016-07-05</td> <td class="my-monospace"> Changes (ep): + Change description of reflns.pdbx_CC_half and reflns_shell.pdbx_CC_half to refer to a decimal value. + Remove local context for _pdbx_deposit_group.group_id + Update enumerations for _pdbx_nmr_chem_shift_ref.atom_group and _pdbx_nmr_exptl_sample_conditions.pH_units + Description updates to several emd related categories + Deposition updates to BRUKER IMUS MICROFOCUS source and RAYONIX MX225-HS/MX170-HS detectors + Range limits for reflns.pdbx_CC_half + _pdbx_item_linked_group and _pdbx_item_linked_group_list updates for pdbx_chem_comp_model_*, em_*, emd_* and_pdbx_struct_special_symmetry categories</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.250</td> <td class="my-monospace">2016-06-04</td> <td class="my-monospace"> Changes (ep): + Reduce _pdbx_nmr_exptl_sample_conditions.temperature_units enumeration for deposition system + Add deposition system enumeration _diffrn_detector.type with numerous DECTRIS detectors + Update examples for: _em_author_list _em_depui _em_grid_pretreatment _em_diffraction _em_diffraction_shell _em_diffraction_stats _em_final_classification _em_euler_angle_assignment _em_ctf_correction _em_image_processing _em_fsc_curve _emd_microscopy _emd_image_recording _pdbx_deposit_group_index _pdbx_entity_src_gen_depositor_info + Create parent/child definitions for: _em_imaging.specimen_id _em_image_scans.image_recording_id _em_3d_reconstruction.image_processing_id _em_diffraction_stats.image_processing_id _em_image_recording.imaging_id _em_final_classification.image_processing_id _em_startup_model.image_processing_id _em_euler_angle_assignment.image_processing_id _em_ctf_correction.image_processing_id _em_volume_selection.image_processing_id _em_image_processing.image_recording.id _emd_microscopy.emd_specimen_id _emd_image_recording.emd_microscopy_id _emd_image_digitization.emd_image_recording_id' _emd_image_processing.emd_image_recording_id' _emd_startup_model.emd_image_processing_id _emd_angle_assignment.emd_image_processing_id _emd_final_reconstruction.emd_image_processing_id _emd_final_classification.emd_image_processing_id _emd_particle_selection.emd_image_processing_id _emd_volume_selection.emd_image_processing_id _emd_ctf_correction.emd_image_processing_id _emd_crystallography_stats.emd_image_processing_id</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.249</td> <td class="my-monospace">2016-05-24</td> <td class="my-monospace"> Changes (ep): + deposition _software.name enumerations updated (CRANK, CRANK2, EVAL15, KYLIN) + Add AichiSR synchrotron and beamline BL2S1 to deposiiton diffrn_source + Add 'dipolar recoupling' and 'spin diffusion' to _pdbx_nmr_constraint_file.constraint_subtype + Add DECTRIS PILATUS3 R 300K detector + Update examples to include correct items: _pdbx_audit_conform_extension _pdbx_chem_comp_depositor_info _pdbx_chem_comp_instance_depositor_info _pdbx_depui_upload _pdbx_deposition_message_info _pdbx_deposition_message_file_reference _pdbx_struct_ref_seq_depositor_info _em_db_reference _em_entity_assembly_molwt _em_entity_assembly_naturalsource _em_image_recording _em_interpret_figure _em_structure_factors_depositor_info _em_volume_selection _em_particle_selection _em_mask_depositor_info _pdbx_struct_special_symmetry _pdbx_reference_publication_list _pdbx_nmr_chem_shift_ref _pdbx_nmr_chem_shift_reference _pdbx_reference_entity_poly_link</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.248</td> <td class="my-monospace">2016-05-03</td> <td class="my-monospace"> Changes (ep): + CAPRI added to _pdbx_database_status.methods_development_category + Correct pdbx_nmr_chem_shift_ref.mol_common_name enumeration + Add RDC to pdbx_nmr_constraint_file.constraint_subtype enumeration + Correct limits of em_3d_crystal_entity.space_group_num + EMD updates to status (HOLD8W), remove 'JEM3400FSC CRYOHOLDER', add new microscopes</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.247</td> <td class="my-monospace">2016-04-27</td> <td class="my-monospace"> Changes (ep): + deposition beamline enumeration updates + add extensions to support pdbx_struct_assembly evidence</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.246</td> <td class="my-monospace">2016-04-11</td> <td class="my-monospace"> Changes (ep): + deposition beamline enumeration updates</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.245</td> <td class="my-monospace">2016-04-02</td> <td class="my-monospace"> Changes (PDBj): + _diffrn_source.type/_diffrn_source.pdbx_synchrotron_beamline deposition enumeration update BL-21 -> PX-BL21</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.244</td> <td class="my-monospace">2016-03-31</td> <td class="my-monospace"> Changes (jw): + add extensions to capture results from ligand binding assays</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.243</td> <td class="my-monospace">2016-03-25</td> <td class="my-monospace"> Changes (jy,zf): + add extensions for group depositions</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.242</td> <td class="my-monospace">2016-03-21</td> <td class="my-monospace"> Changes (jw): + add regular expression for ORCID</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.241</td> <td class="my-monospace">2016-03-08</td> <td class="my-monospace"> Changes (ep): + Update local context for selected em_* categories. + Update internal enumerations for detectors and secondary structure types.</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.240</td> <td class="my-monospace">2016-02-24</td> <td class="my-monospace"> Changes (cl,ep): + Update local context for selected em_* categories. + Add internal data item _pdbx_database_status.auth_req_rel_date</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.239</td> <td class="my-monospace">2016-02-09</td> <td class="my-monospace"> Changes (cl,ap): + enumeration update for item _em_imaging.specimen_holder_model and _emd_microscopy.specimen_holder_model + set local context for categories em_virus_natural_host and em_virus_shell</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.238</td> <td class="my-monospace">2016-02-03</td> <td class="my-monospace"> Changes (jy): + enumeration update for item _pdbx_database_status.methods_development_category</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.237</td> <td class="my-monospace">2016-02-01</td> <td class="my-monospace"> Changes (es): + update enumerations and descriptions for EMD data items -</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.236</td> <td class="my-monospace">2016-01-26</td> <td class="my-monospace"> Changes (cl,ep): + update enumerations and descriptions for EM data items -</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.235</td> <td class="my-monospace">2016-01-21</td> <td class="my-monospace"> Changes (jw): + update context for EM data items - + add _em_admin.map_hold_date</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.234</td> <td class="my-monospace">2016-01-06</td> <td class="my-monospace"> Changes (ep): + description text updates</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.233</td> <td class="my-monospace">2015-12-08</td> <td class="my-monospace"> Changes (cl,ep): + EM extension update</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.232</td> <td class="my-monospace">2015-12-07</td> <td class="my-monospace"> Changes (ep): + enumeration updates</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.231</td> <td class="my-monospace">2015-12-04</td> <td class="my-monospace"> Changes (cl): + EM extension update</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.230</td> <td class="my-monospace">2015-12-03</td> <td class="my-monospace"> Changes (es): + EMD extension update</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.229</td> <td class="my-monospace">2015-12-03</td> <td class="my-monospace"> Changes (jdw): + Category context changed for pdbx_nmr_spectral_peak_list</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.228</td> <td class="my-monospace">2015-11-28</td> <td class="my-monospace"> Changes (es): + EMD extension update</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.227</td> <td class="my-monospace">2015-11-24</td> <td class="my-monospace"> Changes (ep): + DCC extension update</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.226</td> <td class="my-monospace">2015-11-24</td> <td class="my-monospace"> Changes (cl): + EM extension update</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.225</td> <td class="my-monospace">2015-11-24</td> <td class="my-monospace"> Changes (es): + EMD extension update</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.224</td> <td class="my-monospace">2015-11-19</td> <td class="my-monospace"> Changes (es): + EMD extension update</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.223</td> <td class="my-monospace">2015-11-11</td> <td class="my-monospace"> Changes (jw): + Adjust local context for selected NMR and EM data categories.</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.222</td> <td class="my-monospace">2015-11-11</td> <td class="my-monospace"> Changes (es): + EMD extension update</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.221</td> <td class="my-monospace">2015-11-02</td> <td class="my-monospace"> Changes (ep): + Enumeration updates</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.220</td> <td class="my-monospace">2015-10-30</td> <td class="my-monospace"> Changes (ep): + Enumeration updates</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.219</td> <td class="my-monospace">2015-10-22</td> <td class="my-monospace"> Changes (cl): + EM extension update</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.218</td> <td class="my-monospace">2015-10-22</td> <td class="my-monospace"> Changes (es): + EMD extension update</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.217</td> <td class="my-monospace">2015-10-15</td> <td class="my-monospace"> Changes (jw): + add item _pdbx_depui_entry_details.wwpdb_site_id</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.216</td> <td class="my-monospace">2015-10-14</td> <td class="my-monospace"> Changes (cl): + Add _emd_admin.header_release_date, _emd_admin.obsoleted_date and _em_admin.header_release_date</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.215</td> <td class="my-monospace">2015-10-13</td> <td class="my-monospace"> Changes (es): + EMD extension update</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.214</td> <td class="my-monospace">2015-10-08</td> <td class="my-monospace"> Changes (ep): + Enumeration updates + regex update for type author</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.213</td> <td class="my-monospace">2015-10-01</td> <td class="my-monospace"> Changes (jdw): + _pdbx_nmr_systematic_chem_shift_offset.ordinal replaces the natural category key for this category. + Enumeration updates</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.212</td> <td class="my-monospace">2015-09-08</td> <td class="my-monospace"> Changes (cl): + EM extension update</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.211</td> <td class="my-monospace">2015-09-08</td> <td class="my-monospace"> Changes (es): + EMD extension update</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.210</td> <td class="my-monospace">2015-08-31</td> <td class="my-monospace"> Changes (cl,jw): + EM extension update</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.209</td> <td class="my-monospace">2015-08-30</td> <td class="my-monospace"> Changes (ep,jw): + Enumeration updates</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.208</td> <td class="my-monospace">2015-08-14</td> <td class="my-monospace"> Changes (cl,jw): + EM extension update</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.207</td> <td class="my-monospace">2015-08-06</td> <td class="my-monospace"> Changes (ep,jw): + enumeration updates</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.206</td> <td class="my-monospace">2015-07-20</td> <td class="my-monospace"> Changes (jw): + add new category pdbx_audit_conform_extension</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.205</td> <td class="my-monospace">2015-07-17</td> <td class="my-monospace"> Changes (ep,jw): + enumeration updates</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.204</td> <td class="my-monospace">2015-07-06</td> <td class="my-monospace"> Changes (es,cl): + EMD data type refinement</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.203</td> <td class="my-monospace">2015-06-30</td> <td class="my-monospace"> Changes (es): + EMD data type refinement</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.202</td> <td class="my-monospace">2015-06-26</td> <td class="my-monospace"> Changes (es): + EMD regular expression update</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.201</td> <td class="my-monospace">2015-06-24</td> <td class="my-monospace"> Changes (es): + EMD extension update</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.200</td> <td class="my-monospace">2015-06-19</td> <td class="my-monospace"> Changes (cl): + EMD extension update</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.199</td> <td class="my-monospace">2015-06-09</td> <td class="my-monospace"> Changes (cl): + EMD extension update</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.198</td> <td class="my-monospace">2015-06-03</td> <td class="my-monospace"> Changes (es,cl,jdw): + EMD extension update</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.197</td> <td class="my-monospace">2015-05-06</td> <td class="my-monospace"> Changes (ep,ms,jdw): + enumeration updates</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.196</td> <td class="my-monospace">2015-04-30</td> <td class="my-monospace"> Changes (ep,jdw): + enumeration updates</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.195</td> <td class="my-monospace">2015-04-28</td> <td class="my-monospace"> Changes (es,jdw): + EMD extension dictionary update</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.194</td> <td class="my-monospace">2015-04-22</td> <td class="my-monospace"> Changes (ep,jdw): + enumeration updates + add item _pdbx_contact_author.identifier_ORCID. + add chem_comp_model_group extensions.</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.193</td> <td class="my-monospace">2015-03-31</td> <td class="my-monospace"> Changes (cs,jdw): + remove relationship between _pdbx_reference_entity_subcomponents.prd_id and _pdbx_reference_molecule_list.prd_id</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.192</td> <td class="my-monospace">2015-03-18</td> <td class="my-monospace"> Changes (ep,jdw): + Add item _pdbx_depui_entry_details.replace_pdb_id + Enumeration updates</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.191</td> <td class="my-monospace">2015-03-10</td> <td class="my-monospace"> Changes (es,jdw): + EMD extension dictionary update</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.190</td> <td class="my-monospace">2015-02-28</td> <td class="my-monospace"> Changes (ep,jdw): + Enumeration updates - + removed _pdbx_poly_seq_scheme.hetero relationship with _entity_poly_seq.hetero</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.189</td> <td class="my-monospace">2015-02-20</td> <td class="my-monospace"> Changes (es,ep,jdw): + EMD extension dictionary update + Enumeration updates</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.188</td> <td class="my-monospace">2015-02-10</td> <td class="my-monospace"> Changes (es,jdw): + EMD extension dictionary update</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.187</td> <td class="my-monospace">2015-02-03</td> <td class="my-monospace"> Changes (es,cl,jdw): + EMD extension dictionary update</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.186</td> <td class="my-monospace">2015-02-01</td> <td class="my-monospace"> Changes (zf,jdw): + NMR updates for deposition system</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.185</td> <td class="my-monospace">2014-12-17</td> <td class="my-monospace"> Changes (ag,ep,jdw): + NMR updates for deposition system</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.184</td> <td class="my-monospace">2014-12-02</td> <td class="my-monospace"> Changes (es,jdw): + EMD extension dictionary update</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.183</td> <td class="my-monospace">2014-11-21</td> <td class="my-monospace"> Changes (es,cl,jdw): + EMD extension dictionary update</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.182</td> <td class="my-monospace">2014-11-07</td> <td class="my-monospace"> Changes (ag,ez,jdw): + NMR updates for deposition system -</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.181</td> <td class="my-monospace">2014-10-28</td> <td class="my-monospace"> Changes (ag,ez,jdw): + NMR updates for deposition system -</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.180</td> <td class="my-monospace">2014-10-21</td> <td class="my-monospace"> Changes (es,cl,jdw): + EMD dictionary update - make all categories optional --</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.179</td> <td class="my-monospace">2014-10-20</td> <td class="my-monospace"> Changes (es,cl,jdw): + EMD dictionary update</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.178</td> <td class="my-monospace">2014-10-14</td> <td class="my-monospace"> Changes (ep,jdw): + update enumerations for deposition system.</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.177</td> <td class="my-monospace">2014-09-25</td> <td class="my-monospace"> Changes (ep,jdw): + update detector enumerations for deposition system.</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.176</td> <td class="my-monospace">2014-09-11</td> <td class="my-monospace"> Changes (to,jdw): + add _pdbx_depui_validation_status_flags.residual_B_factors_flag</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.175</td> <td class="my-monospace">2014-09-10</td> <td class="my-monospace"> Changes (ep,jdw): + update of NMR alternative mandatory codes and examples</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.174</td> <td class="my-monospace">2014-09-02</td> <td class="my-monospace"> Changes (cl,ep,jdw): + update of EM extensions definitions, examples and enumerations</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.173</td> <td class="my-monospace">2014-08-28</td> <td class="my-monospace"> Changes (cl,jdw): + update of EM extensions definitions, examples and enumerations</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.172</td> <td class="my-monospace">2014-07-30</td> <td class="my-monospace"> Changes (cl,jdw): + update of EM extensions definitions, examples and enumerations</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.171</td> <td class="my-monospace">2014-07-21</td> <td class="my-monospace"> Changes (jdw): + _pdbx_depui_status_flags.has_viewed_validation_report made optional</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.170</td> <td class="my-monospace">2014-07-17</td> <td class="my-monospace"> Changes (cl,ep,jdw): + update of enumerations for 3DEM and other deposition forms.</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.169</td> <td class="my-monospace">2014-07-16</td> <td class="my-monospace"> Changes (ep,jdw): + update of enumerations for deposition forms.</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.168</td> <td class="my-monospace">2014-07-10</td> <td class="my-monospace"> Changes (cl,ep,jdw): + update of EM extensions definitions, examples and enumerations + update of enumerations for deposition forms.</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.167</td> <td class="my-monospace">2014-06-15</td> <td class="my-monospace"> Changes (jdw): + added _pdbx_depui_status_flags.validated_model_file_name, _pdbx_depui_status_flags.merge_prior_model_file_name, _pdbx_depui_status_flags.merge_replace_model_file_name, _pdbx_depui_status_flags.merge_output_model_file_name + Corrected/removed item-linked relation to _struct_ref_seq_dif.db_mon_id. + Updated _refine.pdbx_method_to_determine_structure + Update examples in category pdbx_data_processing_status</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.166</td> <td class="my-monospace">2014-06-06</td> <td class="my-monospace"> Changes (jdw): + Add item _pdbx_struct_conn_angle.ptnr3_symmetry + Add category pdbx_database_status_history</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.165</td> <td class="my-monospace">2014-06-05</td> <td class="my-monospace"> Changes (cl/jdw): + Update em extensions and add deposition specific em categories - + Add save__pdbx_depui_status_flags.has_viewed_validation_report</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.164</td> <td class="my-monospace">2014-06-03</td> <td class="my-monospace"> Changes (jdw): + Update mandatory codes in category pdbx_database_status</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.163</td> <td class="my-monospace">2014-05-30</td> <td class="my-monospace"> Changes (jdw): + remove redundant mandatory code for _pdbx_database_status.data_hold_nmr_contraints</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.162</td> <td class="my-monospace">2014-05-08</td> <td class="my-monospace"> Changes (ep/jdw): + update enumerations in category software</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.161</td> <td class="my-monospace">2014-05-07</td> <td class="my-monospace"> Changes (jdw): + update enumerations in category pdbx_SG_project</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.160</td> <td class="my-monospace">2014-05-02</td> <td class="my-monospace"> Changes (jdw): + Items _entity_src_gen.pdbx_src_id, _entity_src_nat.pdbx_src_id _pdbx_entity_src_syn.pdbx_src_id added to category key and set to mandatory code = yes. + Update internal enumerations for deposition system.</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.159</td> <td class="my-monospace">2014-04-10</td> <td class="my-monospace"> Changes (cl/jdw): + Update in EM extension dictionary in support of new deposition system.</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.158</td> <td class="my-monospace">2014-04-03</td> <td class="my-monospace"> Changes (jdw): + Make context for _entity_poly.pdbx_explicit_linking_flag local. + extend enumeration for _pdbx_contact_author.id.</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.157</td> <td class="my-monospace">2014-03-28</td> <td class="my-monospace"> Changes (ep/jdw): + Update internal enumerations and boundary values for deposition system -</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.156</td> <td class="my-monospace">2014-03-24</td> <td class="my-monospace"> Changes (ep/jdw): + Update detector enumerations</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.155</td> <td class="my-monospace">2014-03-12</td> <td class="my-monospace"> Changes (hy/jdw): + Add preliminary items for _reflns.pdbx_CC_half,_reflns.pdbx_R_split,_reflns_shell.pdbx_CC_half and _reflns_shell.pdbx_R_split.</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.154</td> <td class="my-monospace">2014-03-10</td> <td class="my-monospace"> Changes (ag/eu/jdw): + Update deposition closed enumeration flags for NMR extension definitions.</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.153</td> <td class="my-monospace">2014-03-07</td> <td class="my-monospace"> Changes (eu/jdw): + add item _pdbx_nmr_refine.software_ordinal + update enumeration for _pdbx_database_status.dep_release_code_struct_fact</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.152</td> <td class="my-monospace">2014-03-04</td> <td class="my-monospace"> Changes (ep/jdw): + change type of _pdbx_struct_assembly_depositor_info.oligomeric_count to line + update deposition specific enumerations in category software</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.151</td> <td class="my-monospace">2014-03-01</td> <td class="my-monospace"> Changes (ep/jdw): + update deposition specific enumerations in category pdbx_database_related</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.150</td> <td class="my-monospace">2014-02-25</td> <td class="my-monospace"> Changes (cl/ep/jdw): + update EM deposition specific metadata items.</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.149</td> <td class="my-monospace">2014-02-20</td> <td class="my-monospace"> Changes (jdw): + update deposition mandatory codes and enumerations.</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.148</td> <td class="my-monospace">2014-02-19</td> <td class="my-monospace"> Changes (jdw): + update regular expressions one-letter code sequences + add mandatory codes to pdbx_nmr_chem_shift_ref and pdbx_nmr_constraint_file</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.147</td> <td class="my-monospace">2014-02-18</td> <td class="my-monospace"> Changes (jdw): + update diffraction detector enumerations/</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.146</td> <td class="my-monospace">2014-02-11</td> <td class="my-monospace"> Changes (eu/jdw): + new items _pdbx_nmr_software.details,_pdbx_nmr_exptl_sample.concentration_err,_pdbx_nmr_spectrometer.name, _pdbx_nmr_assigned_chem_shift_list.conditions_label,_pdbx_nmr_spectral_dim.sweep_width_units, _pdbx_nmr_spectral_dim.center_frequency_offset,_pdbx_nmr_spectral_dim.under_sampling_type, _pdbx_nmr_chem_shift_software.software_label + updates for deposition enumerations and mandator codes for NMR extensions.</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.145</td> <td class="my-monospace">2014-02-10</td> <td class="my-monospace"> Changes (cl/jdw): + Update of enumerations for 3DEM extension dictionary. + Add categories pdbx_depui_entry_details and pdbx_data_processing_status. + Added definitions _atom_type.pdbx_scat_Cromer_Mann_a5,_atom_type.pdbx_scat_Cromer_Mann_b5,_refine.pdbx_average_fsc_overall, _refine.pdbx_average_fsc_work,_refine.pdbx_average_fsc_free,_refine_ls_shell.pdbx_fsc_work,_refine_ls_shell.pdbx_fsc_free, _refine_hist.pdbx_number_residues_total,_refine_hist.pdbx_B_iso_mean_ligand,_refine_hist.pdbx_B_iso_mean_solvent, _atom_site_anisotrop.pdbx_PDB_model_num</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.144</td> <td class="my-monospace">2014-02-06</td> <td class="my-monospace"> Changes (cl/jdw): + Update of enumerations for save__em_experiment.reconstruction_method</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.143</td> <td class="my-monospace">2014-01-24</td> <td class="my-monospace"> Changes (ep/jdw): + Update of internal descriptions and enumerations for deposition system.</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.142</td> <td class="my-monospace">2014-01-23</td> <td class="my-monospace"> Changes (ep/jdw): + Update of internal descriptions and enumerations for deposition system.</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.141</td> <td class="my-monospace">2014-01-21</td> <td class="my-monospace"> Changes (ep/jdw): + Update of internal descriptions and enumerations for deposition system.</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.140</td> <td class="my-monospace">2014-01-20</td> <td class="my-monospace"> Changes (ep/jdw): + Update of internal descriptions and enumerations for deposition system.</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.139</td> <td class="my-monospace">2014-01-17</td> <td class="my-monospace"> Changes (jdw): + Update enumerations for item _pdbx_database_status.status_code + add category pdbx_related_exp_data_set + In pdbx_related_exp_data_set limit references to DOI types + Update item descriptions and examples for _pdbx_depui_entity_features.type,_entity_poly.pdbx_target_identifier,_reflns.pdbx_Rsym_value, _refine.pdbx_solvent_vdw_probe_radii,_refine.pdbx_solvent_ion_probe_radii,_citation.pdbx_database_id_DOI,_entity.pdbx_description, and _exptl_crystal_grow.pdbx_details. + Update of internal descriptions and enumerations for deposition system.</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.138</td> <td class="my-monospace">2013-12-20</td> <td class="my-monospace"> Changes (jdw): + Update mandatory codes for category pdbx_contact_author. + Update enumerations for category software.</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.137</td> <td class="my-monospace">2013-12-10</td> <td class="my-monospace"> Changes (jdw): + Update mandatory codes for category pdbx_contact_author. + Update enumerations for category software.</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.136</td> <td class="my-monospace">2013-11-22</td> <td class="my-monospace"> Changes (cl/jdw): + new EMD mapping extension dictionary added. + local context of _pdbx_database_status.status_code_sf removed. + Update context to WWPDB_LOCAL for item _entity_poly.pdbx_sequence_evidence_code + Update context values to WWPDB_LOCAL for categories database_PDB_remark and pdbx_contact_author + multiple updates of EMD/EM extensions. + category group updates</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.135</td> <td class="my-monospace">2013-10-17</td> <td class="my-monospace"> Changes (jdw): + added _pdbx_depui_upload.file_content_type and remove enumeration from _pdbx_depui_upload.file_type. + includes any local meta-data changes coded into the deposition system. + update internal metadata for deposition system + add data categories for messaging pdbx_deposition_message_file_reference and pdbx_deposition_message_info + update mandatory codes and category group assignments + Reassign context RCSB_LOCAL to WWPDB_LOCAL + update software application enumerations. + Update category and item item context values in categories audit_contact_author, pdbx_database_proc, pdbx_entity_name, struct_biol_gen, atom_site and pdbx_database_status. + add internal items _pdbx_database_status.date_begin_processing, _pdbx_database_status.date_end_processing, _pdbx_database_status.date_begin_deposition, _pdbx_database_status.date_begin_release_preparation, _pdbx_database_status.date_author_release_request</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.134</td> <td class="my-monospace">2013-08-27</td> <td class="my-monospace"> Changes (jdw): + Added status flags -- _pdbx_depui_status_flags.is_ligand_processing_complete _pdbx_depui_status_flags.sample_xyz_sequence_alignments_valid _pdbx_depui_entity_status_flags.sample_xyz_sequence_alignments_valid + Added local category context to all internal categories.</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.133</td> <td class="my-monospace">2013-06-18</td> <td class="my-monospace"> Changes (jdw): + updated advisory limits for _reflns_shell.d_res_low and _refine_ls_shell.d_res_low</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.132</td> <td class="my-monospace">2013-06-16</td> <td class="my-monospace"> Changes (jdw): + add _pdbx_seq_map_depositor_info.entity_id _pdbx_seq_map_depositor_info.auth_asym_id _pdbx_seq_map_depositor_info.one_letter_code _pdbx_seq_map_depositor_info.one_letter_code_mod</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.131</td> <td class="my-monospace">2013-06-14</td> <td class="my-monospace"> Changes (jdw): + update enumerations for _pdbx_struct_ref_seq_depositor_info.db_name</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.130</td> <td class="my-monospace">2013-06-14</td> <td class="my-monospace"> Changes (jdw): + added _pdbx_depui_status_flags.has_accepted_terms_and_conditions + updated advisory and hard limits to include equivalence on the boundary endpoints.</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.129</td> <td class="my-monospace">2013-05-29</td> <td class="my-monospace"> Changes (jdw): + _pdbx_database_status.pdbx_annotator replaces _pdbx_database_status.rcsb_annotator</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.128</td> <td class="my-monospace">2013-05-23</td> <td class="my-monospace"> Changes (jdw): + add item _entity_poly.pdbx_sequence_evidence_code</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.127</td> <td class="my-monospace">2013-04-27</td> <td class="my-monospace"> Changes (jdw): + Update alternate descriptions and enumerations for deposition system.</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.126</td> <td class="my-monospace">2013-04-16</td> <td class="my-monospace"> Changes (jdw): + Set _pdbx_contact_author.role and _pdbx_contact_author.role internally mandatory. + Set _pdbx_contact_author.name_mi optional + Relax regular expression for _pdbx_struct_ref_seq_depositor_info.db_seq_one_letter_code + Set _entity_poly.pdbx_seq_one_letter_code, _entity_src_gen.pdbx_gene_src_scientific_name, _entity_src_nat.pdbx_organism_scientific internally mandatory. + Add _pdbx_depui_status_flags.has_helical_symmetry, _pdbx_depui_status_flags.has_point_symmetry, _pdbx_depui_status_flags.has_cyclic_symmetry +</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.125</td> <td class="my-monospace">2013-04-08</td> <td class="my-monospace"> Changes (jdw): + add items _pdbx_struct_ref_seq_dif_depositor_info.entity_id and _pdbx_chem_comp_instance_depositor_info.formula</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.124</td> <td class="my-monospace">2013-03-15</td> <td class="my-monospace"> Changes (jdw): + add optional items _pdbx_validate_main_chain_plane.label_alt_id, _pdbx_validate_planes.lable_alt_id, _pdbx_validate_torsion.label_alt_id</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.123</td> <td class="my-monospace">2013-03-12</td> <td class="my-monospace"> Changes (jdw): + add category pdbx_depui_entity_features</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.122</td> <td class="my-monospace">2013-03-11</td> <td class="my-monospace"> Changes (jdw): + add items _pdbx_depui_status_flags.primary_citation_status, _pdbx_depui_status_flags.reference_citation_status, _pdbx_depui_status_flags.corresponding_author_status</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.121</td> <td class="my-monospace">2013-03-07</td> <td class="my-monospace"> Changes (jdw): + bulk import of RCSB local enumerations into internal pdbx_item_enumeration containers,</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.120</td> <td class="my-monospace">2013-03-01</td> <td class="my-monospace"> Changes (jdw): + consolidated pdbx_struct_ref_depositor_info into pdbx_struct_ref_seq_depositor_info</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.119</td> <td class="my-monospace">2013-02-20</td> <td class="my-monospace"> Changes (jdw): + restore main public version of mmcif_pdbx-def-2.dic + added _pdbx_depui_status_flags.prediction_target and category pdbx_depui_entity_status_flags</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.118</td> <td class="my-monospace">2013-02-20</td> <td class="my-monospace"> Changes (jdw): + Added internal category pdbx_chem_comp_upload_depositor_info to hold potentially multiple data files per chemical component.</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.117</td> <td class="my-monospace">2013-02-13</td> <td class="my-monospace"> Changes (jdw): + Added internal categories -depui_validation_status_flags, pdbx_depui_upload, pdbx_depui_status_flags</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.116</td> <td class="my-monospace">2013-02-13</td> <td class="my-monospace"> Changes (jdw): + added _pdbx_helical_symmetry_depositor_info.status_flag and _pdbx_point_symmetry_depositor_info.status_flag + updated the collection of advisory boundary values --</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.115</td> <td class="my-monospace">2013-02-06</td> <td class="my-monospace"> Changes (jdw,kh): + Add categories pdbx_chem_comp_subcomponent_struct_conn and pdbx_chem_comp_subcomponent_entity_list. + For item _pdbx_chem_comp_subcomponent_entity_list.type change data type to uline and extend enumeration. + Set mandatory codes to optional for categories emd, emd_map and pdbx_nmr_software_task</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.114</td> <td class="my-monospace">2012-12-14</td> <td class="my-monospace"> Changes (eu,ag): + Added items _pdbx_nmr_assigned_chem_shift_list.label, _pdbx_nmr_assigned_chem_shift_list.conditions_label, _pdbx_nmr_spectral_peak_list.label, and _pdbx_nmr_spectral_peak_list.conditions_label</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.113</td> <td class="my-monospace">2012-12-04</td> <td class="my-monospace"> Changes (eu,ag): + Add _pdbx_nmr_exptl.sample_state</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.112</td> <td class="my-monospace">2012-11-12</td> <td class="my-monospace"> Changes (cl,jdw): + Update to the 3DEM data categories -</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.111</td> <td class="my-monospace">2012-11-08</td> <td class="my-monospace"> Changes (cl,jdw): + Update to the 3DEM data categories -</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.110</td> <td class="my-monospace">2012-11-07</td> <td class="my-monospace"> Changes (ss,sv,jdw): +Added item _pdbx_entity_src_gen_depositor_info.entity_id +Removed item _pdbx_entity_src_gen_depositor_info.alt_source_flag and _pdbx_entity_src_gen_depositor_info.gene_src_strain +Items _pdbx_entity_src_gen_depositor_info.beg_seq_num and _pdbx_entity_src_gen_depositor_info.end_seq_num set to mandatory +Data types for _pdbx_entity_src_gen_depositor_info.host_org_ncbi_taxonomy_id set to int</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.109</td> <td class="my-monospace">2012-10-15</td> <td class="my-monospace"> Changes (jdw): + pdbx_chem_comp_instance_depositor_info + Update joint enumerations for _pdbx_reference_molecule.class. + Update enumeration list for _em_imaging.specimen_holder_model</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.108</td> <td class="my-monospace">2012-10-03</td> <td class="my-monospace"> Changes (jdw): + Adjust mandatory codes for items in the pdbx_contact_author category. + Update all current extension dictionaries in + Correct version number typo.</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.107</td> <td class="my-monospace">2012-09-19</td> <td class="my-monospace"> Changes (jdw): + Rename categories to: pdbx_reference_linked_entity, pdbx_reference_linked_entity_comp_list, pdbx_reference_linked_entity_link, and pdbx_reference_linked_entity_comp_link and distinguish inter and intra entity linkages. + Revised enumeration for _pdbx_reference_linked_entity.link_to_entity_type</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.106</td> <td class="my-monospace">2012-09-18</td> <td class="my-monospace"> Changes (jdw): + remove existing EM dictionary which duplicates new EM item definitions + add categories pdbx_reference_linked_entity, pdbx_reference_linked_entity_list, pdbx_reference_linked_entity_link.</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.105</td> <td class="my-monospace">2012-09-06</td> <td class="my-monospace"> Changes (jdw): + Revised definition of _struct_conn.pdbx_leaving_atom_flag. + Add definition _pdbx_solvent_atom_site_mapping.symmetry/symmetry_as_xyz</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.104</td> <td class="my-monospace">2012-09-01</td> <td class="my-monospace"> Changes (jdw): + Added category pdbx_audit_support extension. + Incorporated D&A alternate descriptions and boundary values.</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.103</td> <td class="my-monospace">2012-08-29</td> <td class="my-monospace"> Changes (jdw/jy): + Update enumerations for _pdbx_family_prd_audit.action_type and _pdbx_prd_audit.action_type + Update enumerations for _pdbx_reference_molecule.class/type, _pdbx_molecule_features.class/type + Added category for publication reference data - PDBX_REFERENCE_PUBLICATION_LIST</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.102</td> <td class="my-monospace">2012-08-28</td> <td class="my-monospace"> Changes (jdw/cl): + added category group em_group_da + added EM extension dictionaries for D&A project. _em_experiment.entry_id _em_experiment.reconstruction_method _em_experiment.specimen_type _em_software.ordinal _em_software.classification _em_software.name _em_software.version _em_assembly.entry_id _em_assembly.name _em_assembly.composition _em_assembly.num_components _em_assembly.mol_wt_exp _em_assembly.mol_wt_theo _em_assembly.mol_wt_method _em_assembly.details _em_entity_assembly.id _em_entity_assembly.type _em_entity_assembly.name _em_entity_assembly.details _em_entity_assembly.organism_scientific _em_entity_assembly.organism_common _em_entity_assembly.strain _em_entity_assembly.tissue _em_entity_assembly.cell _em_entity_assembly.organelle _em_entity_assembly.cellular_location _em_entity_assembly.engineered_flag _em_entity_assembly.expression_system _em_entity_assembly.expression_system_plasmid _em_entity_assembly.go_id _em_entity_assembly.ipr_id _em_entity_assembly.ncbi_taxonomy_id _em_entity_assembly.synonym _em_entity_assembly.mutant_flag _em_entity_assembly.number_of_copies _em_entity_assembly.oligomeric_details _em_entity_assembly.entity_list _em_entity_assembly.mol_wt _em_entity_assembly.mol_wt_method _em_entity_assembly.entity_parent_id _em_virus_entity.id _em_virus_entity.virus_host_category _em_virus_entity.virus_host_species _em_virus_entity.virus_host_ncbi_taxonomy_id _em_virus_entity.virus_host_growth_cell _em_virus_entity.virus_type _em_virus_entity.virus_isolate _em_virus_entity.entity_assembly_id _em_virus_entity.enveloped _em_virus_entity.empty _em_virus_entity.details _em_icos_virus_shells.virus_entity_id _em_icos_virus_shells.id _em_icos_virus_shells.shell_diameter _em_icos_virus_shells.triangulation_num _em_specimen.id _em_specimen.sample_state _em_specimen.num_grids _em_specimen.cryoprotectant _em_specimen.embedding_material _em_specimen.details _em_sample_preparation.id _em_sample_preparation.specimen_id _em_sample_preparation.entity_assembly_id _em_sample_preparation.ph _em_sample_preparation.buffer_id _em_sample_preparation.sample_concentration _em_sample_preparation.details _em_specimen_support.id _em_specimen_support.specimen_id _em_specimen_support.method _em_specimen_support.grid_model _em_specimen_support.grid_material _em_specimen_support.grid_mesh_size _em_specimen_support.grid_type _em_specimen_support.pretreatment _em_specimen_support.details _em_specimen_support.film_material _em_specimen_support.film_topology _em_specimen_support.film_thickness _em_array_formation.id _em_array_formation.specimen_id _em_array_formation.method _em_array_formation.apparatus _em_array_formation.atmosphere _em_array_formation.pH _em_array_formation.temp _em_array_formation.time _em_array_formation.buffer_id _em_array_formation.details _em_array_formation.number_arrays _em_array_formation.mean_2d_crystal_size _em_stain.id _em_stain.specimen_id _em_stain.type _em_stain.material _em_stain.details _em_buffer.id _em_buffer.name _em_buffer.details _em_buffer_components.id _em_buffer_components.buffer_id _em_buffer_components.name _em_buffer_components.conc _em_buffer_components.conc_units _em_buffer_components.details _em_vitrification.id _em_vitrification.specimen_id _em_vitrification.cryogen_name _em_vitrification.freezing_technique _em_vitrification.humidity _em_vitrification.temp _em_vitrification.ambient_temp _em_vitrification.instrument _em_vitrification.method _em_vitrification.time_resolved_state _em_vitrification.details _em_imaging.id _em_imaging.astigmatism _em_imaging.electron_beam_tilt_params _em_imaging.specimen_id _em_imaging.detector_id _em_imaging.scans_id _em_imaging.microscope_model _em_imaging.specimen_holder_model _em_imaging.details _em_imaging.date _em_imaging.accelerating_voltage _em_imaging.illumination_mode _em_imaging.mode _em_imaging.nominal_cs _em_imaging.nominal_defocus_min _em_imaging.nominal_defocus_max _em_imaging.tilt_angle_min _em_imaging.tilt_angle_max _em_imaging.tilt_angle_increment _em_imaging.second_tilt_axis_flag _em_imaging.nominal_magnification _em_imaging.calibrated_magnification _em_imaging.electron_source _em_imaging.electron_dose _em_imaging.energy_filter _em_imaging.energy_window_min _em_imaging.energy_window_max _em_imaging.temperature _em_imaging.cryogen _em_imaging.detector_distance _em_imaging.recording_temperature_minimum _em_imaging.recording_temperature_maximum _em_imaging.c2_aperture_diameter _em_imaging.alignment_procedure _em_imaging.Cs_corrector _em_imaging.Cc_corrector _em_imaging.phase_plate _em_detector.id _em_detector.details _em_detector.class _em_detector.type _em_detector.detective_quantum_efficiency _em_image_scans.id _em_image_scans.number_digital_images _em_image_scans.details _em_image_scans.scanner_model _em_image_scans.scanner_sampling_size _em_image_scans.apix_sampling _em_image_scans.od_range _em_image_scans.quant_bit_size _em_image_scans.width _em_image_scans.height _em_image_scans.sampling_size _em_image_scans.frames_per_image _em_2d_crystal_symmetry.id _em_2d_crystal_symmetry.length_a _em_2d_crystal_symmetry.length_b _em_2d_crystal_symmetry.angle_gamma _em_2d_crystal_symmetry.details _em_2d_crystal_symmetry.angle_alpha _em_2d_crystal_symmetry.angle_beta _em_2d_crystal_symmetry.length_c _em_2d_crystal_symmetry.thickness_c _em_2d_crystal_symmetry.space_group_name_H-M _em_point_symmetry.entry_id _em_point_symmetry.symmetry_type _em_point_symmetry.cyclic_symmetry _em_helical_symmetry.id _em_helical_symmetry.entity_assembly_id _em_helical_symmetry.details _em_helical_symmetry.dyad _em_helical_symmetry.axial_symmetry _em_helical_symmetry.angular_rotation_per_subunit _em_helical_symmetry.axial_rise_per_subunit _em_helical_symmetry.hand _em_2d_projection_selection.entry_id _em_2d_projection_selection.num_particles _em_2d_projection_selection.method _em_2d_projection_selection.details _em_3d_reconstruction.entry_id _em_3d_reconstruction.entity_assembly_id _em_3d_reconstruction.method _em_3d_reconstruction.spatial_filtering _em_3d_reconstruction.masking _em_3d_reconstruction.details _em_3d_reconstruction.resolution _em_3d_reconstruction.resolution_method _em_3d_reconstruction.magnification_calibration _em_3d_reconstruction.ctf_correction_method _em_3d_reconstruction.ctf_correction_type _em_3d_reconstruction.nominal_pixel_size _em_3d_reconstruction.actual_pixel_size _em_3d_reconstruction.num_particles _em_3d_reconstruction.num_class_averages _em_3d_reconstruction.software _em_3d_reconstruction.initial_model_type _em_3d_reconstruction.initial_model_details _em_euler_assignment.id _em_euler_assignment.name _em_euler_assignment.method _em_euler_assignment.num_reference_projections _em_euler_assignment.merit_function _em_euler_assignment.angular_sampling _em_euler_assignment.details _em_electron_crystallography.entry_id _em_electron_crystallography.num_meas_intensities _em_electron_crystallography.num_structure_factors _em_electron_crystallography.details _em_electron_crystallography.d_res_high _em_electron_crystallography.overall_phase_residual _em_electron_crystallography.overall_phase_error _em_electron_crystallography.rejection_criteria_phase_error _em_electron_crystallography.Fourier_space_coverage _em_electron_crystallography.r_merge _em_electron_crystallography.r_sym _em_electron_crystallography_shell.id _em_electron_crystallography_shell.res_low _em_electron_crystallography_shell.res_high _em_electron_crystallography_shell.phase_residual _em_electron_crystallography_shell.num_structure_factors _em_electron_crystallography_shell.num_meas_intensities _em_electron_crystallography_tilt.id _em_electron_crystallography_tilt.tilt_angle _em_electron_crystallography_tilt.num_diffraction_patterns _em_electron_crystallography_tilt.num_micrograph_images _em_tomography.id _em_tomography.entry_id _em_tomography.tilt_angle_incr _em_tomography.num_raw_images _em_tomography.details _em_3d_subvolume_selection.entry_id _em_3d_subvolume_selection.num_subvolumes _em_3d_subvolume_selection.num_tomograms _em_3d_subvolume_selection.method _em_3d_subvolume_selection.details _em_3d_subvolume_classification.id _em_3d_subvolume_classification.name _em_3d_subvolume_classification.method _em_3d_subvolume_classification.num_classes _em_3d_subvolume_classification.merit_function _em_3d_subvolume_classification.details _em_3d_fitting.id _em_3d_fitting.method _em_3d_fitting.target_criteria _em_3d_fitting.software_name _em_3d_fitting.details _em_3d_fitting.overall_b_value _em_3d_fitting.ref_space _em_3d_fitting.ref_protocol _em_3d_fitting_list.id _em_3d_fitting_list.3d_fitting_id _em_3d_fitting_list.pdb_entry_id _em_3d_fitting_list.pdb_chain_id _em_3d_fitting_list.details _emd.emd_entry_id _emd.title _emd_map.emd_entry_id _emd_map.annotation_details _emd_map.format _emd_map.sizeKb _emd_map.axisOrderFast _emd_map.axisOrderMedium _emd_map.axisOrderSlow _emd_map.cell_angle_alpha _emd_map.cell_angle_beta _emd_map.cell_angle_gamma _emd_map.cell_length_a _emd_map.cell_length_b _emd_map.cell_length_c _emd_map.data_type _emd_map.details _emd_map.num_columns _emd_map.num_rows _emd_map.num_sections _emd_map.origin_column _emd_map.origin_row _emd_map.origin_section _emd_map.pixel_x _emd_map.pixel_y _emd_map.pixel_z _emd_map.spaceGroupNumber _emd_map.spacing_x _emd_map.spacing_y _emd_map.spacing_z _emd_map.density_min _emd_map.density_max _emd_map.density_mean _emd_map.density_stddev _emd_map.contour_level _emd_map.contour_level_source _emd_files.id _emd_files.type _emd_files.file_name _emd_status.emd_entry_id _emd_status.current_status _emd_status.last_update _emd_status.deposition_date _emd_status.map_release_date _emd_status_history.id _emd_status_history.date _emd_status_history.code _emd_status_history.processing_site _emd_status_history.annotator_initials _emd_status_history.details _emd_obsolete_supersede.id _emd_obsolete_supersede.obsoleted_emd_entry_id _emd_obsolete_supersede.supersede_emd_entry_id _emd_obsolete_supersede.date _emd_obsolete_supersede.details _emd_auxiliary.id _emd_auxiliary.link _emd_auxiliary.link_data_type _emd_auxiliary.details _emd_database_related.db_name _emd_database_related.db_id _emd_database_related.details _emd_database_related.frame_relationship_flag _emd_database_related.fitted_coordinates_flag _emd_mask.id _emd_mask.annotation_details _emd_mask.format _emd_mask.sizeKb _emd_mask.axisOrderFast _emd_mask.axisOrderMedium _emd_mask.axisOrderSlow _emd_mask.cell_angle_alpha _emd_mask.cell_angle_beta _emd_mask.cell_angle_gamma _emd_mask.cell_length_a _emd_mask.cell_length_b _emd_mask.cell_length_c _emd_mask.data_type _emd_mask.details _emd_mask.num_columns _emd_mask.num_rows _emd_mask.num_sections _emd_mask.origin_column _emd_mask.origin_row _emd_mask.origin_section _emd_mask.pixel_x _emd_mask.pixel_y _emd_mask.pixel_z _emd_mask.spaceGroupNumber _emd_mask.spacing_x _emd_mask.spacing_y _emd_mask.spacing_z _emd_mask.density_min _emd_mask.density_max _emd_mask.density_mean _emd_mask.density_stddev _emd_mask.contour_level _emd_mask.contour_level_source + added various items to capture depositor information for the wwPDB deposition and annotation system. _pdbx_chem_comp_depositor_info.ordinal _pdbx_chem_comp_depositor_info.comp_id _pdbx_chem_comp_depositor_info.name _pdbx_chem_comp_depositor_info.upload_file_type _pdbx_chem_comp_depositor_info.upload_file_name _pdbx_chem_comp_depositor_info.formula _pdbx_chem_comp_depositor_info.type _pdbx_chem_comp_depositor_info.descriptor _pdbx_chem_comp_depositor_info.descriptor_type _pdbx_chem_comp_depositor_info.detailes _pdbx_struct_ref_depositor_info.biol_id _pdbx_struct_ref_depositor_info.db_code _pdbx_struct_ref_depositor_info.db_name _pdbx_struct_ref_depositor_info.entity_id _pdbx_struct_ref_depositor_info.id _pdbx_struct_ref_depositor_info.db_accession _pdbx_struct_ref_depositor_info.seq_one_letter_code _pdbx_struct_ref_depositor_info.align_begin _pdbx_struct_ref_seq_depositor_info.align_id _pdbx_struct_ref_seq_depositor_info.db_align_beg _pdbx_struct_ref_seq_depositor_info.db_align_end _pdbx_struct_ref_seq_depositor_info.details _pdbx_struct_ref_seq_depositor_info.ref_id _pdbx_struct_ref_seq_depositor_info.db_accession _pdbx_struct_ref_seq_depositor_info.db_code _pdbx_struct_ref_depositor_info.db_name _pdbx_struct_ref_seq_depositor_info.db_seq_one_letter_code _pdbx_struct_ref_seq_dif_depositor_info.align_id _pdbx_struct_ref_seq_dif_depositor_info.db_mon_id _pdbx_struct_ref_seq_dif_depositor_info.db_seq_id _pdbx_struct_ref_seq_dif_depositor_info.details _pdbx_struct_ref_seq_dif_depositor_info.auth_mon_id _pdbx_struct_ref_seq_dif_depositor_info.auth_seq_id _pdbx_struct_ref_seq_dif_depositor_info.db_accession _pdbx_struct_ref_seq_dif_depositor_info.db_code _pdbx_struct_ref_dif_depositor_info.db_name _pdbx_struct_ref_dif_depositor_info.annotation _pdbx_struct_assembly_prop_depositor_info.biol_id _pdbx_struct_assembly_prop_depositor_info.type _pdbx_struct_assembly_prop_depositor_info.value _pdbx_struct_assembly_prop_depositor_info.details _pdbx_struct_assembly_depositor_info.details _pdbx_struct_assembly_depositor_info.id _pdbx_struct_assembly_depositor_info.method_details _pdbx_struct_assembly_depositor_info.oligomeric_details _pdbx_struct_assembly_depositor_info.oligomeric_count _pdbx_struct_assembly_depositor_info.matrix_flag _pdbx_struct_assembly_depositor_info.upload_file_name _pdbx_struct_assembly_gen_depositor_info.asym_id_list _pdbx_struct_assembly_gen_depositor_info.assembly_id _pdbx_struct_assembly_gen_depositor_info.oper_expression _pdbx_struct_oper_list_depositor_info.id _pdbx_struct_oper_list_depositor_info.type _pdbx_struct_oper_list_depositor_info.name _pdbx_struct_oper_list_depositor_info.symmetry_operation _pdbx_struct_oper_list_depositor_info.matrix[1][1] _pdbx_struct_oper_list_depositor_info.matrix[1][2] _pdbx_struct_oper_list_depositor_info.matrix[1][3] _pdbx_struct_oper_list_depositor_info.matrix[2][1] _pdbx_struct_oper_list_depositor_info.matrix[2][2] _pdbx_struct_oper_list_depositor_info.matrix[2][3] _pdbx_struct_oper_list_depositor_info.matrix[3][1] _pdbx_struct_oper_list_depositor_info.matrix[3][2] _pdbx_struct_oper_list_depositor_info.matrix[3][3] _pdbx_struct_oper_list_depositor_info.vector[1] _pdbx_struct_oper_list_depositor_info.vector[2] _pdbx_struct_oper_list_depositor_info.vector[3] _pdbx_point_symmetry_depositor_info.entry_id _pdbx_point_symmetry_depositor_info.Schoenflies_symbol _pdbx_point_symmetry_depositor_info.circular_symmetry _pdbx_point_symmetry_depositor_info.H-M_notation _pdbx_helical_symmetry_depositor_info.entry_id _pdbx_helical_symmetry_depositor_info.number_of_operations _pdbx_helical_symmetry_depositor_info.rotation_per_n_subunits _pdbx_helical_symmetry_depositor_info.rise_per_n_subunits _pdbx_helical_symmetry_depositor_info.n_subunits_divisor _pdbx_helical_symmetry_depositor_info.dyad_axis _pdbx_helical_symmetry_depositor_info.circular_symmetry _pdbx_solvent_atom_site_mapping.id _pdbx_solvent_atom_site_mapping.label_alt_id _pdbx_solvent_atom_site_mapping.label_asym_id _pdbx_solvent_atom_site_mapping.label_atom_id _pdbx_solvent_atom_site_mapping.label_comp_id _pdbx_solvent_atom_site_mapping.label_seq_id _pdbx_solvent_atom_site_mapping.pdbx_align _pdbx_solvent_atom_site_mapping.PDB_ins_code _pdbx_solvent_atom_site_mapping.pre_auth_asym_id _pdbx_solvent_atom_site_mapping.pre_auth_atom_id _pdbx_solvent_atom_site_mapping.pre_auth_comp_id _pdbx_solvent_atom_site_mapping.pre_auth_seq_id _pdbx_solvent_atom_site_mapping.pre_PDB_ins_code _pdbx_solvent_atom_site_mapping.pre_auth_alt_id _pdbx_solvent_atom_site_mapping.auth_asym_id _pdbx_solvent_atom_site_mapping.auth_atom_id _pdbx_solvent_atom_site_mapping.auth_comp_id _pdbx_solvent_atom_site_mapping.auth_seq_id _pdbx_solvent_atom_site_mapping.auth_alt_id _pdbx_solvent_atom_site_mapping.occupancy _pdbx_solvent_atom_site_mapping.Cartn_x _pdbx_solvent_atom_site_mapping.Cartn_y _pdbx_solvent_atom_site_mapping.Cartn_z _pdbx_solvent_atom_site_mapping.pre_Cartn_x _pdbx_solvent_atom_site_mapping.pre_Cartn_y _pdbx_solvent_atom_site_mapping.pre_Cartn_z _pdbx_entity_src_gen_depositor_info.alt_source_flag _pdbx_entity_src_gen_depositor_info.seq_type _pdbx_entity_src_gen_depositor_info.beg_seq_num _pdbx_entity_src_gen_depositor_info.end_seq_num _pdbx_molecule_features_depositor_info.entity_id _pdbx_molecule_features_depositor_info.class _pdbx_molecule_features_depositor_info.type _pdbx_molecule_features_depositor_info.name _pdbx_molecule_features_depositor_info.details + added flag for filtering STRUCT_CONN linkages relative to chemical component leaving atom assignments. _struct_conn.pdbx_leaving_atom_flag</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.101</td> <td class="my-monospace">2012-08-22</td> <td class="my-monospace"> Changes (jdw): + added provisional extension for multi-source entities + added provisional extension for branched entities + added provisional extension for residues on special positions + added provisional extension for NMR data items for D&A deposition system + added provisional extension for identifying the ligand in a site</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> <tr> <td class="my-monospace">5.100</td> <td class="my-monospace">2012-08-21</td> <td class="my-monospace"> Changes (jdw): + Release as provisional version 5.100</td> <td class="my-monospace">mmcif_pdbx.dic</td> </tr> </tbody> </table> </div>  </div>  </div>  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