Table of Contents — November 2021, 31 (11)

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class="cit-first-element cit-title-group">The human ribosomal DNA array is composed of highly homogenized tandem clusters </h4> <ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Yutaro Hori</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Akira Shimamoto</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Takehiko Kobayashi</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">November 2021 </span><span class="cit-vol">31<span class="cit-sep cit-sep-after-article-vol">: </span></span><span class="cit-pages"><span class="cit-first-page">1971</span><span class="cit-sep">-</span><span class="cit-last-page">1982</span></span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>August 18, 2021<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.275838.121 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/31/11/1971.abstract" rel="abstract">Abstract</a></li> <li><a href="/content/31/11/1971.full" rel="full-text">Full Text</a></li> <li><a href="/content/31/11/1971.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> <li class="last-item"><a href="/content/31/11/1971/suppl/DC1" rel="supplemental-data" class="dslink-supplemental-material">Supplemental Material</a></li> </ul> <span class="cit-flags"><span class="open-access-note">OPEN ACCESS ARTICLE</span> </span> </div> </li> <li class="cit creative-commons creative-commons-by-nc/4.0/ has-earlier-version toc-cit"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;31/11/1983" /><label for="gca-form-cb-d2413856e125Research">Select this article</label></div> <div class="cit-metadata"> <h4 class="cit-first-element cit-title-group">Embryonic LTR retrotransposons supply promoter modules to somatic tissues </h4> <ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Kosuke Hashimoto</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Eeva-Mari Jouhilahti</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Virpi Töhönen</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Piero Carninci</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Juha Kere</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Shintaro Katayama</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">November 2021 </span><span class="cit-vol">31<span class="cit-sep cit-sep-after-article-vol">: </span></span><span class="cit-pages"><span class="cit-first-page">1983</span><span class="cit-sep">-</span><span class="cit-last-page">1993</span></span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>October 21, 2021<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.275354.121 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/31/11/1983.abstract" rel="abstract">Abstract</a></li> <li><a href="/content/31/11/1983.full" rel="full-text">Full Text</a></li> <li><a href="/content/31/11/1983.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> <li class="last-item"><a href="/content/31/11/1983/suppl/DC1" rel="supplemental-data" class="dslink-supplemental-material">Supplemental Material</a></li> </ul> </div> </li> <li class="cit openaccess creative-commons creative-commons-by/4.0/ has-earlier-version toc-cit"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;31/11/1994" /><label for="gca-form-cb-d2413856e126Research">Select this article</label></div> <div class="cit-metadata"> <h4 class="cit-first-element cit-title-group">Mutational bias in spermatogonia impacts the anatomy of regulatory sites in the human genome </h4> <ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Vera B. Kaiser</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Lana Talmane</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Yatendra Kumar</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Fiona Semple</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Marie MacLennan</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Deciphering Developmental Disorders Study</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">David R. FitzPatrick</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Martin S. Taylor</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Colin A. Semple</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">November 2021 </span><span class="cit-vol">31<span class="cit-sep cit-sep-after-article-vol">: </span></span><span class="cit-pages"><span class="cit-first-page">1994</span><span class="cit-sep">-</span><span class="cit-last-page">2007</span></span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>August 20, 2021<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.275407.121 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/31/11/1994.abstract" rel="abstract">Abstract</a></li> <li><a href="/content/31/11/1994.full" rel="full-text">Full Text</a></li> <li><a href="/content/31/11/1994.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> <li class="last-item"><a href="/content/31/11/1994/suppl/DC1" rel="supplemental-data" class="dslink-supplemental-material">Supplemental Material</a></li> </ul> <span class="cit-flags"><span class="open-access-note">OPEN ACCESS ARTICLE</span> </span> </div> </li> <li class="cit openaccess creative-commons creative-commons-by-nc/4.0/ has-earlier-version toc-cit"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;31/11/2008" /><label for="gca-form-cb-d2413856e127Research">Select this article</label></div> <div class="cit-metadata"> <h4 class="cit-first-element cit-title-group">Nuclease deficiencies alter plasma cell-free DNA methylation profiles </h4> <ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Diana S.C. Han</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Meng Ni</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Rebecca W.Y. Chan</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Danny K.L. Wong</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Linda T. Hiraki</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Stefano Volpi</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Peiyong Jiang</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Kathy O. Lui</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">K.C. Allen Chan</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Rossa W.K. Chiu</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Y.M. Dennis Lo</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">November 2021 </span><span class="cit-vol">31<span class="cit-sep cit-sep-after-article-vol">: </span></span><span class="cit-pages"><span class="cit-first-page">2008</span><span class="cit-sep">-</span><span class="cit-last-page">2021</span></span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>September 1, 2021<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.275426.121 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/31/11/2008.abstract" rel="abstract">Abstract</a></li> <li><a href="/content/31/11/2008.full" rel="full-text">Full Text</a></li> <li><a href="/content/31/11/2008.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> <li class="last-item"><a href="/content/31/11/2008/suppl/DC1" rel="supplemental-data" class="dslink-supplemental-material">Supplemental Material</a></li> </ul> <span class="cit-flags"><span class="open-access-note">OPEN ACCESS ARTICLE</span> </span> </div> </li> <li class="cit openaccess creative-commons creative-commons-by/4.0/ has-earlier-version toc-cit"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;31/11/2022" /><label for="gca-form-cb-d2413856e128Research">Select this article</label></div> <div class="cit-metadata"> <h4 class="cit-first-element cit-title-group">RBFOX splicing factors contribute to a broad but selective recapitulation of peripheral tissue splicing patterns in the thymus </h4> <ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Kathrin Jansen</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Noriko Shikama-Dorn</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Moustafa Attar</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Stefano Maio</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Maria Lopopolo</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">David Buck</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Georg A. Holländer</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Stephen N. Sansom</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">November 2021 </span><span class="cit-vol">31<span class="cit-sep cit-sep-after-article-vol">: </span></span><span class="cit-pages"><span class="cit-first-page">2022</span><span class="cit-sep">-</span><span class="cit-last-page">2034</span></span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>October 14, 2021<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.275245.121 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/31/11/2022.abstract" rel="abstract">Abstract</a></li> <li><a href="/content/31/11/2022.full" rel="full-text">Full Text</a></li> <li><a href="/content/31/11/2022.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> <li class="last-item"><a href="/content/31/11/2022/suppl/DC1" rel="supplemental-data" class="dslink-supplemental-material">Supplemental Material</a></li> </ul> <span class="cit-flags"><span class="open-access-note">OPEN ACCESS ARTICLE</span> </span> </div> </li> <li class="cit openaccess creative-commons creative-commons-by-nc/4.0/ has-earlier-version toc-cit"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;31/11/2035" /><label for="gca-form-cb-d2413856e129Research">Select this article</label></div> <div class="cit-metadata"> <h4 class="cit-first-element cit-title-group">Positive selection in noncoding genomic regions of vocal learning birds is associated with genes implicated in vocal learning and speech functions in humans </h4> <ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">James A. Cahill</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Joel Armstrong</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Alden Deran</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Carolyn J. Khoury</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Benedict Paten</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">David Haussler</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Erich D. Jarvis</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">November 2021 </span><span class="cit-vol">31<span class="cit-sep cit-sep-after-article-vol">: </span></span><span class="cit-pages"><span class="cit-first-page">2035</span><span class="cit-sep">-</span><span class="cit-last-page">2049</span></span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>October 19, 2021<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.275989.121 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/31/11/2035.abstract" rel="abstract">Abstract</a></li> <li><a href="/content/31/11/2035.full" rel="full-text">Full Text</a></li> <li><a href="/content/31/11/2035.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> <li class="last-item"><a href="/content/31/11/2035/suppl/DC1" rel="supplemental-data" class="dslink-supplemental-material">Supplemental Material</a></li> </ul> <span class="cit-flags"><span class="open-access-note">OPEN ACCESS ARTICLE</span> </span> </div> </li> <li class="cit creative-commons creative-commons-by-nc/4.0/ has-earlier-version toc-cit"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;31/11/2050" /><label for="gca-form-cb-d2413856e130Research">Select this article</label></div> <div class="cit-metadata"> <h4 class="cit-first-element cit-title-group">Genome-wide oscillations in G + C density and sequence conservation </h4> <ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Zarmik Moqtaderi</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Susan Brown</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Welcome Bender</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">November 2021 </span><span class="cit-vol">31<span class="cit-sep cit-sep-after-article-vol">: </span></span><span class="cit-pages"><span class="cit-first-page">2050</span><span class="cit-sep">-</span><span class="cit-last-page">2057</span></span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>October 14, 2021<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.274332.120 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/31/11/2050.abstract" rel="abstract">Abstract</a></li> <li><a href="/content/31/11/2050.full" rel="full-text">Full Text</a></li> <li><a href="/content/31/11/2050.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> <li class="last-item"><a href="/content/31/11/2050/suppl/DC1" rel="supplemental-data" class="dslink-supplemental-material">Supplemental Material</a></li> </ul> </div> </li> <li class="cit creative-commons creative-commons-by-nc/4.0/ has-earlier-version toc-cit"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;31/11/2058" /><label for="gca-form-cb-d2413856e131Research">Select this article</label></div> <div class="cit-metadata"> <h4 class="cit-first-element cit-title-group">Cellular abundance shapes function in piRNA-guided genome defense </h4> <ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Pavol Genzor</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Parthena Konstantinidou</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Daniel Stoyko</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Amirhossein Manzourolajdad</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Celine Marlin Andrews</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Alexandra R. Elchert</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Constantinos Stathopoulos</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Astrid D. Haase</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">November 2021 </span><span class="cit-vol">31<span class="cit-sep cit-sep-after-article-vol">: </span></span><span class="cit-pages"><span class="cit-first-page">2058</span><span class="cit-sep">-</span><span class="cit-last-page">2068</span></span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>October 19, 2021<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.275478.121 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/31/11/2058.abstract" rel="abstract">Abstract</a></li> <li><a href="/content/31/11/2058.full" rel="full-text">Full Text</a></li> <li><a href="/content/31/11/2058.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> <li class="last-item"><a href="/content/31/11/2058/suppl/DC1" rel="supplemental-data" class="dslink-supplemental-material">Supplemental Material</a></li> </ul> </div> </li> <li class="cit openaccess creative-commons creative-commons-by-nc/4.0/ has-earlier-version toc-cit"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;31/11/2069" /><label for="gca-form-cb-d2413856e132Research">Select this article</label></div> <div class="cit-metadata"> <h4 class="cit-first-element cit-title-group">Shared evolutionary trajectories of three independent neo-sex chromosomes in <em>Drosophila</em> </h4> <ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Masafumi Nozawa</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Yohei Minakuchi</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Kazuhiro Satomura</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Shu Kondo</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Atsushi Toyoda</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Koichiro Tamura</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">November 2021 </span><span class="cit-vol">31<span class="cit-sep cit-sep-after-article-vol">: </span></span><span class="cit-pages"><span class="cit-first-page">2069</span><span class="cit-sep">-</span><span class="cit-last-page">2079</span></span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>October 21, 2021<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.275503.121 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/31/11/2069.abstract" rel="abstract">Abstract</a></li> <li><a href="/content/31/11/2069.full" rel="full-text">Full Text</a></li> <li><a href="/content/31/11/2069.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> <li class="last-item"><a href="/content/31/11/2069/suppl/DC1" rel="supplemental-data" class="dslink-supplemental-material">Supplemental Material</a></li> </ul> <span class="cit-flags"><span class="open-access-note">OPEN ACCESS ARTICLE</span> </span> </div> </li> </ul> </div> <div class="gca-buttons"> <input type="reset" name="reset" value="Clear" /> <input type="submit" name="submit" value="Get All Checked Abstracts" /> </div> <div class="toc-level level1 pub-section-Method no-children no-parent"> <h2 id="Method"><span><a class="toc-section-return" href="#content-block"></a>Methods</span></h2> <ul class="cit-list"> <li class="cit openaccess creative-commons creative-commons-by/4.0/ has-earlier-version toc-cit"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;31/11/2080" /><label for="gca-form-cb-d2413856e141Method">Select this article</label></div> <div class="cit-metadata"> <h4 class="cit-first-element cit-title-group">Effective sequence similarity detection with strobemers </h4> <ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Kristoffer Sahlin</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">November 2021 </span><span class="cit-vol">31<span class="cit-sep cit-sep-after-article-vol">: </span></span><span class="cit-pages"><span class="cit-first-page">2080</span><span class="cit-sep">-</span><span class="cit-last-page">2094</span></span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>October 19, 2021<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.275648.121 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/31/11/2080.abstract" rel="abstract">Abstract</a></li> <li><a href="/content/31/11/2080.full" rel="full-text">Full Text</a></li> <li><a href="/content/31/11/2080.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> <li class="last-item"><a href="/content/31/11/2080/suppl/DC1" rel="supplemental-data" class="dslink-supplemental-material">Supplemental Material</a></li> </ul> <span class="cit-flags"><span class="open-access-note">OPEN ACCESS ARTICLE</span> </span> </div> </li> <li class="cit openaccess creative-commons creative-commons-by-nc/4.0/ has-earlier-version toc-cit"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;31/11/2095" /><label for="gca-form-cb-d2413856e142Method">Select this article</label></div> <div class="cit-metadata"> <h4 class="cit-first-element cit-title-group">Cancer-associated dynamics and potential regulators of intronic polyadenylation revealed by IPAFinder using standard RNA-seq data </h4> <ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Zhaozhao Zhao</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Qiushi Xu</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Ran Wei</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Weixu Wang</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Dong Ding</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Yu Yang</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Jun Yao</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Liye Zhang</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Yue-Qing Hu</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Gang Wei</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Ting Ni</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">November 2021 </span><span class="cit-vol">31<span class="cit-sep cit-sep-after-article-vol">: </span></span><span class="cit-pages"><span class="cit-first-page">2095</span><span class="cit-sep">-</span><span class="cit-last-page">2106</span></span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>September 2, 2021<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.271627.120 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/31/11/2095.abstract" rel="abstract">Abstract</a></li> <li><a href="/content/31/11/2095.full" rel="full-text">Full Text</a></li> <li><a href="/content/31/11/2095.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> <li class="last-item"><a href="/content/31/11/2095/suppl/DC1" rel="supplemental-data" class="dslink-supplemental-material">Supplemental Material</a></li> </ul> <span class="cit-flags"><span class="open-access-note">OPEN ACCESS ARTICLE</span> </span> </div> </li> <li class="cit creative-commons creative-commons-by-nc/4.0/ has-earlier-version toc-cit"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;31/11/2107" /><label for="gca-form-cb-d2413856e143Method">Select this article</label></div> <div class="cit-metadata"> <h4 class="cit-first-element cit-title-group">Variational inference using approximate likelihood under the coalescent with recombination </h4> <ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Xinhao Liu</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Huw A. Ogilvie</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Luay Nakhleh</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">November 2021 </span><span class="cit-vol">31<span class="cit-sep cit-sep-after-article-vol">: </span></span><span class="cit-pages"><span class="cit-first-page">2107</span><span class="cit-sep">-</span><span class="cit-last-page">2119</span></span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>August 23, 2021<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.273631.120 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/31/11/2107.abstract" rel="abstract">Abstract</a></li> <li><a href="/content/31/11/2107.full" rel="full-text">Full Text</a></li> <li><a href="/content/31/11/2107.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> <li class="last-item"><a href="/content/31/11/2107/suppl/DC1" rel="supplemental-data" class="dslink-supplemental-material">Supplemental Material</a></li> </ul> </div> </li> <li class="cit creative-commons creative-commons-by-nc/4.0/ has-earlier-version toc-cit"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;31/11/2120" /><label for="gca-form-cb-d2413856e144Method">Select this article</label></div> <div class="cit-metadata"> <h4 class="cit-first-element cit-title-group">Targeted regulation of transcription in primary cells using CRISPRa and CRISPRi </h4> <ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Trine I. Jensen</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Nanna S. Mikkelsen</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Zongliang Gao</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Johannes Foßelteder</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Gabriel Pabst</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Esben Axelgaard</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Anders Laustsen</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Saskia König</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Andreas Reinisch</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Rasmus O. Bak</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">November 2021 </span><span class="cit-vol">31<span class="cit-sep cit-sep-after-article-vol">: </span></span><span class="cit-pages"><span class="cit-first-page">2120</span><span class="cit-sep">-</span><span class="cit-last-page">2130</span></span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>August 18, 2021<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.275607.121 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/31/11/2120.abstract" rel="abstract">Abstract</a></li> <li><a href="/content/31/11/2120.full" rel="full-text">Full Text</a></li> <li><a href="/content/31/11/2120.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> <li class="last-item"><a href="/content/31/11/2120/suppl/DC1" rel="supplemental-data" class="dslink-supplemental-material">Supplemental Material</a></li> </ul> </div> </li> <li class="cit creative-commons creative-commons-by-nc/4.0/ has-earlier-version toc-cit"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;31/11/2131" /><label for="gca-form-cb-d2413856e145Method">Select this article</label></div> <div class="cit-metadata"> <h4 class="cit-first-element cit-title-group">Efficient computation of Faith's phylogenetic diversity with applications in characterizing microbiomes </h4> <ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">George Armstrong</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Kalen Cantrell</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Shi Huang</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Daniel McDonald</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Niina Haiminen</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Anna Paola Carrieri</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Qiyun Zhu</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Antonio Gonzalez</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Imran McGrath</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Kristen L. Beck</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Daniel Hakim</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Aki S. Havulinna</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Guillaume Méric</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Teemu Niiranen</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Leo Lahti</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Veikko Salomaa</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Mohit Jain</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Michael Inouye</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Austin D. Swafford</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Ho-Cheol Kim</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Laxmi Parida</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Yoshiki Vázquez-Baeza</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Rob Knight</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">November 2021 </span><span class="cit-vol">31<span class="cit-sep cit-sep-after-article-vol">: </span></span><span class="cit-pages"><span class="cit-first-page">2131</span><span class="cit-sep">-</span><span class="cit-last-page">2137</span></span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>September 3, 2021<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.275777.121 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/31/11/2131.abstract" rel="abstract">Abstract</a></li> <li><a href="/content/31/11/2131.full" rel="full-text">Full Text</a></li> <li><a href="/content/31/11/2131.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> <li class="last-item"><a href="/content/31/11/2131/suppl/DC1" rel="supplemental-data" class="dslink-supplemental-material">Supplemental Material</a></li> </ul> </div> </li> </ul> </div> <div class="gca-buttons"> <input type="reset" name="reset" value="Clear" /> <input type="submit" name="submit" value="Get All Checked Abstracts" /> </div> <div class="toc-level level1 pub-section-Resource last-item no-children no-parent"> <h2 id="Resource"><span><a class="toc-section-return" href="#content-block"></a>Resource</span></h2> <ul class="cit-list"> <li class="cit openaccess creative-commons creative-commons-by/4.0/ has-earlier-version toc-cit"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;31/11/2138" /><label for="gca-form-cb-d2413856e154Resource">Select this article</label></div> <div class="cit-metadata"> <h4 class="cit-first-element cit-title-group">A systematic analysis of <em>Trypanosoma brucei</em> chromatin factors identifies novel protein interaction networks associated with sites of transcription initiation and termination </h4> <ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Desislava P. Staneva</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Roberta Carloni</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Tatsiana Auchynnikava</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Pin Tong</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Juri Rappsilber</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">A. Arockia Jeyaprakash</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Keith R. Matthews</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Robin C. Allshire</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">November 2021 </span><span class="cit-vol">31<span class="cit-sep cit-sep-after-article-vol">: </span></span><span class="cit-pages"><span class="cit-first-page">2138</span><span class="cit-sep">-</span><span class="cit-last-page">2154</span></span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>August 18, 2021<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.275368.121 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/31/11/2138.abstract" rel="abstract">Abstract</a></li> <li><a href="/content/31/11/2138.full" rel="full-text">Full Text</a></li> <li><a href="/content/31/11/2138.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> <li class="last-item"><a href="/content/31/11/2138/suppl/DC1" rel="supplemental-data" class="dslink-supplemental-material">Supplemental Material</a></li> </ul> <span class="cit-flags"><span class="open-access-note">OPEN ACCESS ARTICLE</span> </span> </div> </li> </ul> </div> <div class="gca-buttons"> <input type="reset" name="reset" value="Clear" /> <input type="submit" name="submit" value="Get All Checked Abstracts" /> </div> </form> <div id="content-end-sb" class="sb-div"></div> </div> <div id="col-2"> <div class="sidebar-issue-nav sidebar-nav"> <a href="/content/31/10.toc" title="Previous issue" class="previous">« Previous</a><span class="issue-nav-sep"> | </span><a href="/content/31/12.toc" title="Next issue" class="next">Next Issue »</a> </div> <div class="sidebar toc-navigation"> <h4><span>This Issue</span></h4> <cite> <span class="toc-top-pub-date"> November 2021; </span> 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Table of Contents — November 2021, 31 (11)