Table of Contents — April 2021, 31 (4)

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href="/cgi/adclick/?ad=57887&adclick=true&url=https%3A%2F%2Fnanoporetech.com%2Fapplications%2Ftechniques%2Fmultiomics%3Futm_campaign%3DMOD%2B2024%26utm_source%3Dcoldspring%26utm_medium%3Dbanner%26utm_content%3Dmultiomics%2Bpage" target="_blank"><img class="adborder0" title="ONT" src="//genome.cshlp.org/adsystem/graphics/8209593427309464/genome/ONT%20TOC1-%20Ask%20more%20questions%20.jpg?ad=57887&adview=true" alt="ONT" /></a></li> </ul> <div id="toc-header"> <h1>Table of Contents</h1><cite>April 2021; 31 (4)</cite> </div> <div class="section-break"> </div> <form method="get" action="/gca"> <div class="gca-buttons"> <input type="reset" name="reset" value="Clear" /> <input type="submit" name="submit" value="Get All Checked Abstracts" /> </div> <div class="toc-level level1 pub-section-Research first-item no-children no-parent"> <h2 id="Research"><span><a class="toc-section-return" href="#content-block"></a>Research</span></h2> <ul class="cit-list"> <li class="cit creative-commons creative-commons-by-nc/4.0/ has-earlier-version toc-cit"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;31/4/529" /><label for="gca-form-cb-d1483518e111Research">Select this article</label></div> <div class="cit-metadata"> <h4 class="cit-first-element cit-title-group">Low-pass sequencing increases the power of GWAS and decreases measurement error of polygenic risk scores compared to genotyping arrays </h4> <ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Jeremiah H. Li</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Chase A. Mazur</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Tomaz Berisa</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Joseph K. Pickrell</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">April 2021 </span><span class="cit-vol">31<span class="cit-sep cit-sep-after-article-vol">: </span></span><span class="cit-pages"><span class="cit-first-page">529</span><span class="cit-sep">-</span><span class="cit-last-page">537</span></span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>February 3, 2021<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.266486.120 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/31/4/529.abstract" rel="abstract">Abstract</a></li> <li><a href="/content/31/4/529.full" rel="full-text">Full Text</a></li> <li><a href="/content/31/4/529.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> <li class="last-item"><a href="/content/31/4/529/suppl/DC1" rel="supplemental-data" class="dslink-supplemental-material">Supplemental Material</a></li> </ul> </div> </li> <li class="cit openaccess creative-commons creative-commons-by-nc/4.0/ has-earlier-version toc-cit"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;31/4/538" /><label for="gca-form-cb-d1483518e112Research">Select this article</label></div> <div class="cit-metadata"> <h4 class="cit-first-element cit-title-group">AP-1 subunits converge promiscuously at enhancers to potentiate transcription </h4> <ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Jungkyun Seo</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">D. Dewran Koçak</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Luke C. Bartelt</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Courtney A. Williams</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Alejandro Barrera</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Charles A. Gersbach</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Timothy E. Reddy</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">April 2021 </span><span class="cit-vol">31<span class="cit-sep cit-sep-after-article-vol">: </span></span><span class="cit-pages"><span class="cit-first-page">538</span><span class="cit-sep">-</span><span class="cit-last-page">550</span></span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>March 5, 2021<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.267898.120 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/31/4/538.abstract" rel="abstract">Abstract</a></li> <li><a href="/content/31/4/538.full" rel="full-text">Full Text</a></li> <li><a href="/content/31/4/538.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> <li class="last-item"><a href="/content/31/4/538/suppl/DC1" rel="supplemental-data" class="dslink-supplemental-material">Supplemental Material</a></li> </ul> <span class="cit-flags"><span class="open-access-note">OPEN ACCESS ARTICLE</span> </span> </div> </li> <li class="cit openaccess creative-commons creative-commons-by-nc/4.0/ has-earlier-version toc-cit"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;31/4/551" /><label for="gca-form-cb-d1483518e113Research">Select this article</label></div> <div class="cit-metadata"> <h4 class="cit-first-element cit-title-group"><em>ZNF91</em> deletion in human embryonic stem cells leads to ectopic activation of SVA retrotransposons and up-regulation of KRAB zinc finger gene clusters </h4> <ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Nina L. Haring</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Elisabeth J. van Bree</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Whitney S. Jordaan</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Judith R.E. Roels</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Gonzalo Congrains Sotomayor</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Tiziana M. Hey</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Fred T.G. White</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Marc D. Galland</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Marten P. Smidt</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Frank M.J. Jacobs</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">April 2021 </span><span class="cit-vol">31<span class="cit-sep cit-sep-after-article-vol">: </span></span><span class="cit-pages"><span class="cit-first-page">551</span><span class="cit-sep">-</span><span class="cit-last-page">563</span></span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>March 15, 2021<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.265348.120 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/31/4/551.abstract" rel="abstract">Abstract</a></li> <li><a href="/content/31/4/551.full" rel="full-text">Full Text</a></li> <li><a href="/content/31/4/551.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> <li class="last-item"><a href="/content/31/4/551/suppl/DC1" rel="supplemental-data" class="dslink-supplemental-material">Supplemental Material</a></li> </ul> <span class="cit-flags"><span class="open-access-note">OPEN ACCESS ARTICLE</span> </span> </div> </li> <li class="cit creative-commons creative-commons-by-nc/4.0/ has-earlier-version toc-cit"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;31/4/564" /><label for="gca-form-cb-d1483518e114Research">Select this article</label></div> <div class="cit-metadata"> <h4 class="cit-first-element cit-title-group">A flexible repertoire of transcription factor binding sites and a diversity threshold determines enhancer activity in embryonic stem cells </h4> <ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Gurdeep Singh</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Shanelle Mullany</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Sakthi D. Moorthy</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Richard Zhang</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Tahmid Mehdi</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Ruxiao Tian</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Andrew G. Duncan</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Alan M. Moses</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Jennifer A. Mitchell</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">April 2021 </span><span class="cit-vol">31<span class="cit-sep cit-sep-after-article-vol">: </span></span><span class="cit-pages"><span class="cit-first-page">564</span><span class="cit-sep">-</span><span class="cit-last-page">575</span></span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>March 12, 2021<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.272468.120 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/31/4/564.abstract" rel="abstract">Abstract</a></li> <li><a href="/content/31/4/564.full" rel="full-text">Full Text</a></li> <li><a href="/content/31/4/564.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> <li class="last-item"><a href="/content/31/4/564/suppl/DC1" rel="supplemental-data" class="dslink-supplemental-material">Supplemental Material</a></li> </ul> </div> </li> <li class="cit creative-commons creative-commons-by-nc/4.0/ has-earlier-version toc-cit"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;31/4/576" /><label for="gca-form-cb-d1483518e115Research">Select this article</label></div> <div class="cit-metadata"> <h4 class="cit-first-element cit-title-group">Cellular plasticity balances the metabolic and proliferation dynamics of a regenerating liver </h4> <ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Ullas V. Chembazhi</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Sushant Bangru</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Mikel Hernaez</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Auinash Kalsotra</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">April 2021 </span><span class="cit-vol">31<span class="cit-sep cit-sep-after-article-vol">: </span></span><span class="cit-pages"><span class="cit-first-page">576</span><span class="cit-sep">-</span><span class="cit-last-page">591</span></span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>March 1, 2021<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.267013.120 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/31/4/576.abstract" rel="abstract">Abstract</a></li> <li><a href="/content/31/4/576.full" rel="full-text">Full Text</a></li> <li><a href="/content/31/4/576.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> <li class="last-item"><a href="/content/31/4/576/suppl/DC1" rel="supplemental-data" class="dslink-supplemental-material">Supplemental Material</a></li> </ul> </div> </li> <li class="cit openaccess creative-commons creative-commons-by/4.0/ has-earlier-version toc-cit"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;31/4/592" /><label for="gca-form-cb-d1483518e116Research">Select this article</label></div> <div class="cit-metadata"> <h4 class="cit-first-element cit-title-group">Genomic analyses provide insights into peach local adaptation and responses to climate change </h4> <ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Yong Li</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Ke Cao</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Nan Li</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Gengrui Zhu</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Weichao Fang</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Changwen Chen</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Xinwei Wang</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Jian Guo</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Qi Wang</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Tiyu Ding</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Jiao Wang</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Liping Guan</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Junxiu Wang</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Kuozhan Liu</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Wenwu Guo</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Pere Arús</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Sanwen Huang</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Zhangjun Fei</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Lirong Wang</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">April 2021 </span><span class="cit-vol">31<span class="cit-sep cit-sep-after-article-vol">: </span></span><span class="cit-pages"><span class="cit-first-page">592</span><span class="cit-sep">-</span><span class="cit-last-page">606</span></span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>March 9, 2021<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.261032.120 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/31/4/592.abstract" rel="abstract">Abstract</a></li> <li><a href="/content/31/4/592.full" rel="full-text">Full Text</a></li> <li><a href="/content/31/4/592.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> <li class="last-item"><a href="/content/31/4/592/suppl/DC1" rel="supplemental-data" class="dslink-supplemental-material">Supplemental Material</a></li> </ul> <span class="cit-flags"><span class="open-access-note">OPEN ACCESS ARTICLE</span> </span> </div> </li> <li class="cit creative-commons creative-commons-by-nc/4.0/ has-earlier-version toc-cit"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;31/4/607" /><label for="gca-form-cb-d1483518e117Research">Select this article</label></div> <div class="cit-metadata"> <h4 class="cit-first-element cit-title-group">Orc4 spatiotemporally stabilizes centromeric chromatin </h4> <ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Lakshmi Sreekumar</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Kiran Kumari</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Krishnendu Guin</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Asif Bakshi</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Neha Varshney</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Bhagya C. Thimmappa</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Leelavati Narlikar</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Ranjith Padinhateeri</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Rahul Siddharthan</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Kaustuv Sanyal</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">April 2021 </span><span class="cit-vol">31<span class="cit-sep cit-sep-after-article-vol">: </span></span><span class="cit-pages"><span class="cit-first-page">607</span><span class="cit-sep">-</span><span class="cit-last-page">621</span></span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>January 29, 2021<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.265900.120 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/31/4/607.abstract" rel="abstract">Abstract</a></li> <li><a href="/content/31/4/607.full" rel="full-text">Full Text</a></li> <li><a href="/content/31/4/607.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> <li class="last-item"><a href="/content/31/4/607/suppl/DC1" rel="supplemental-data" class="dslink-supplemental-material">Supplemental Material</a></li> </ul> </div> </li> <li class="cit creative-commons creative-commons-by-nc/4.0/ has-earlier-version toc-cit"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;31/4/622" /><label for="gca-form-cb-d1483518e118Research">Select this article</label></div> <div class="cit-metadata"> <h4 class="cit-first-element cit-title-group">Improved redox homeostasis owing to the up-regulation of one-carbon metabolism and related pathways is crucial for yeast heterosis at high temperature </h4> <ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Liang Song</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Jun-Yan Shi</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Shou-Fu Duan</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Da-Yong Han</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Kuan Li</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Ri-Peng Zhang</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Peng-Yu He</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Pei-Jie Han</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Qi-Ming Wang</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Feng-Yan Bai</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">April 2021 </span><span class="cit-vol">31<span class="cit-sep cit-sep-after-article-vol">: </span></span><span class="cit-pages"><span class="cit-first-page">622</span><span class="cit-sep">-</span><span class="cit-last-page">634</span></span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>March 15, 2021<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.262055.120 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/31/4/622.abstract" rel="abstract">Abstract</a></li> <li><a href="/content/31/4/622.full" rel="full-text">Full Text</a></li> <li><a href="/content/31/4/622.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> <li class="last-item"><a href="/content/31/4/622/suppl/DC1" rel="supplemental-data" class="dslink-supplemental-material">Supplemental Material</a></li> </ul> </div> </li> <li class="cit openaccess creative-commons creative-commons-by-nc/4.0/ has-earlier-version toc-cit"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;31/4/635" /><label for="gca-form-cb-d1483518e119Research">Select this article</label></div> <div class="cit-metadata"> <h4 class="cit-first-element cit-title-group">SARS-CoV-2 genomic diversity and the implications for qRT-PCR diagnostics and transmission </h4> <ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Nicolae Sapoval</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Medhat Mahmoud</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Michael D. Jochum</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Yunxi Liu</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">R.A. Leo Elworth</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Qi Wang</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Dreycey Albin</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Huw A. Ogilvie</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Michael D. Lee</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Sonia Villapol</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Kyle M. Hernandez</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Irina Maljkovic Berry</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Jonathan Foox</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Afshin Beheshti</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Krista Ternus</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Kjersti M. Aagaard</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">David Posada</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Christopher E. Mason</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Fritz J. Sedlazeck</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Todd J. Treangen</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">April 2021 </span><span class="cit-vol">31<span class="cit-sep cit-sep-after-article-vol">: </span></span><span class="cit-pages"><span class="cit-first-page">635</span><span class="cit-sep">-</span><span class="cit-last-page">644</span></span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>February 18, 2021<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.268961.120 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/31/4/635.abstract" rel="abstract">Abstract</a></li> <li><a href="/content/31/4/635.full" rel="full-text">Full Text</a></li> <li><a href="/content/31/4/635.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> <li class="last-item"><a href="/content/31/4/635/suppl/DC1" rel="supplemental-data" class="dslink-supplemental-material">Supplemental Material</a></li> </ul> <span class="cit-flags"><span class="open-access-note">OPEN ACCESS ARTICLE</span> </span> </div> </li> </ul> </div> <div class="gca-buttons"> <input type="reset" name="reset" value="Clear" /> <input type="submit" name="submit" value="Get All Checked Abstracts" /> </div> <div class="toc-level level1 pub-section-Method no-children no-parent"> <h2 id="Method"><span><a class="toc-section-return" href="#content-block"></a>Methods</span></h2> <ul class="cit-list"> <li class="cit openaccess creative-commons creative-commons-by/4.0/ has-earlier-version toc-cit"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;31/4/645" /><label for="gca-form-cb-d1483518e128Method">Select this article</label></div> <div class="cit-metadata"> <h4 class="cit-first-element cit-title-group">Subgenomic RNA identification in SARS-CoV-2 genomic sequencing data </h4> <ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Matthew D. Parker</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Benjamin B. Lindsey</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Shay Leary</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Silvana Gaudieri</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Abha Chopra</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Matthew Wyles</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Adrienn Angyal</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Luke R. Green</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Paul Parsons</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Rachel M. Tucker</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Rebecca Brown</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Danielle Groves</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Katie Johnson</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Laura Carrilero</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Joe Heffer</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">David G. Partridge</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Cariad Evans</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Mohammad Raza</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Alexander J. Keeley</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Nikki Smith</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Ana Da Silva Filipe</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">James G. Shepherd</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Chris Davis</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Sahan Bennett</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Vattipally B. Sreenu</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Alain Kohl</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Elihu Aranday-Cortes</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Lily Tong</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Jenna Nichols</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Emma C. Thomson</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">The COVID-19 Genomics UK (COG-UK) Consortium</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Dennis Wang</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Simon Mallal</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Thushan I. de Silva</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">April 2021 </span><span class="cit-vol">31<span class="cit-sep cit-sep-after-article-vol">: </span></span><span class="cit-pages"><span class="cit-first-page">645</span><span class="cit-sep">-</span><span class="cit-last-page">658</span></span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>March 15, 2021<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.268110.120 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/31/4/645.abstract" rel="abstract">Abstract</a></li> <li><a href="/content/31/4/645.full" rel="full-text">Full Text</a></li> <li><a href="/content/31/4/645.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> <li class="last-item"><a href="/content/31/4/645/suppl/DC1" rel="supplemental-data" class="dslink-supplemental-material">Supplemental Material</a></li> </ul> <span class="cit-flags"><span class="open-access-note">OPEN ACCESS ARTICLE</span> </span> </div> </li> <li class="cit creative-commons creative-commons-by-nc/4.0/ has-earlier-version toc-cit"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;31/4/659" /><label for="gca-form-cb-d1483518e129Method">Select this article</label></div> <div class="cit-metadata"> <h4 class="cit-first-element cit-title-group">Multi–cell type gene coexpression network analysis reveals coordinated interferon response and cross–cell type correlations in systemic lupus erythematosus </h4> <ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Bharat Panwar</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Benjamin J. Schmiedel</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Shu Liang</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Brandie White</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Enrique Rodriguez</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Kenneth Kalunian</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Andrew J. McKnight</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Rachel Soloff</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Gregory Seumois</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Pandurangan Vijayanand</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Ferhat Ay</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">April 2021 </span><span class="cit-vol">31<span class="cit-sep cit-sep-after-article-vol">: </span></span><span class="cit-pages"><span class="cit-first-page">659</span><span class="cit-sep">-</span><span class="cit-last-page">676</span></span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>March 5, 2021<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.265249.120 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/31/4/659.abstract" rel="abstract">Abstract</a></li> <li><a href="/content/31/4/659.full" rel="full-text">Full Text</a></li> <li><a href="/content/31/4/659.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> <li class="last-item"><a href="/content/31/4/659/suppl/DC1" rel="supplemental-data" class="dslink-supplemental-material">Supplemental Material</a></li> </ul> </div> </li> <li class="cit creative-commons creative-commons-by-nc/4.0/ has-earlier-version toc-cit"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;31/4/677" /><label for="gca-form-cb-d1483518e130Method">Select this article</label></div> <div class="cit-metadata"> <h4 class="cit-first-element cit-title-group">Linear-time cluster ensembles of large-scale single-cell RNA-seq and multimodal data </h4> <ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Van Hoan Do</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Francisca Rojas Ringeling</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Stefan Canzar</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">April 2021 </span><span class="cit-vol">31<span class="cit-sep cit-sep-after-article-vol">: </span></span><span class="cit-pages"><span class="cit-first-page">677</span><span class="cit-sep">-</span><span class="cit-last-page">688</span></span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>February 24, 2021<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.267906.120 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/31/4/677.abstract" rel="abstract">Abstract</a></li> <li><a href="/content/31/4/677.full" rel="full-text">Full Text</a></li> <li><a href="/content/31/4/677.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> <li class="last-item"><a href="/content/31/4/677/suppl/DC1" rel="supplemental-data" class="dslink-supplemental-material">Supplemental Material</a></li> </ul> </div> </li> <li class="cit creative-commons creative-commons-by-nc/4.0/ has-earlier-version toc-cit"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;31/4/689" /><label for="gca-form-cb-d1483518e131Method">Select this article</label></div> <div class="cit-metadata"> <h4 class="cit-first-element cit-title-group">Modeling expression ranks for noise-tolerant differential expression analysis of scRNA-seq data </h4> <ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Krishan Gupta</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Manan Lalit</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Aditya Biswas</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Chad D. Sanada</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Cassandra Greene</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Kyle Hukari</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Ujjwal Maulik</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Sanghamitra Bandyopadhyay</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Naveen Ramalingam</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Gaurav Ahuja</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Abhik Ghosh</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Debarka Sengupta</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">April 2021 </span><span class="cit-vol">31<span class="cit-sep cit-sep-after-article-vol">: </span></span><span class="cit-pages"><span class="cit-first-page">689</span><span class="cit-sep">-</span><span class="cit-last-page">697</span></span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>March 5, 2021<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.267070.120 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/31/4/689.abstract" rel="abstract">Abstract</a></li> <li><a href="/content/31/4/689.full" rel="full-text">Full Text</a></li> <li><a href="/content/31/4/689.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> <li class="last-item"><a href="/content/31/4/689/suppl/DC1" rel="supplemental-data" class="dslink-supplemental-material">Supplemental Material</a></li> </ul> </div> </li> <li class="cit openaccess creative-commons creative-commons-by-nc/4.0/ has-earlier-version toc-cit"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;31/4/698" /><label for="gca-form-cb-d1483518e132Method">Select this article</label></div> <div class="cit-metadata"> <h4 class="cit-first-element cit-title-group">Alignment of single-cell RNA-seq samples without overcorrection using kernel density matching </h4> <ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Mengjie Chen</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Qi Zhan</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Zepeng Mu</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Lili Wang</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Zhaohui Zheng</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Jinlin Miao</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Ping Zhu</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Yang I. Li</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">April 2021 </span><span class="cit-vol">31<span class="cit-sep cit-sep-after-article-vol">: </span></span><span class="cit-pages"><span class="cit-first-page">698</span><span class="cit-sep">-</span><span class="cit-last-page">712</span></span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>March 19, 2021<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.261115.120 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/31/4/698.abstract" rel="abstract">Abstract</a></li> <li><a href="/content/31/4/698.full" rel="full-text">Full Text</a></li> <li><a href="/content/31/4/698.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> <li class="last-item"><a href="/content/31/4/698/suppl/DC1" rel="supplemental-data" class="dslink-supplemental-material">Supplemental Material</a></li> </ul> <span class="cit-flags"><span class="open-access-note">OPEN ACCESS ARTICLE</span> </span> </div> </li> <li class="cit openaccess creative-commons creative-commons-by-nc/4.0/ has-earlier-version toc-cit"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;31/4/713" /><label for="gca-form-cb-d1483518e133Method">Select this article</label></div> <div class="cit-metadata"> <h4 class="cit-first-element cit-title-group">Ultrafast functional profiling of RNA-seq data for nonmodel organisms </h4> <ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Peng Liu</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Jessica Ewald</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Jose Hector Galvez</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Jessica Head</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Doug Crump</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Guillaume Bourque</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Niladri Basu</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Jianguo Xia</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">April 2021 </span><span class="cit-vol">31<span class="cit-sep cit-sep-after-article-vol">: </span></span><span class="cit-pages"><span class="cit-first-page">713</span><span class="cit-sep">-</span><span class="cit-last-page">720</span></span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>March 17, 2021<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.269894.120 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/31/4/713.abstract" rel="abstract">Abstract</a></li> <li><a href="/content/31/4/713.full" rel="full-text">Full Text</a></li> <li><a href="/content/31/4/713.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> <li class="last-item"><a href="/content/31/4/713/suppl/DC1" rel="supplemental-data" class="dslink-supplemental-material">Supplemental Material</a></li> </ul> <span class="cit-flags"><span class="open-access-note">OPEN ACCESS ARTICLE</span> </span> </div> </li> <li class="cit creative-commons creative-commons-by-nc/4.0/ has-earlier-version toc-cit"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;31/4/721" /><label for="gca-form-cb-d1483518e134Method">Select this article</label></div> <div class="cit-metadata"> <h4 class="cit-first-element cit-title-group">Fast decoding cell type–specific transcription factor binding landscape at single-nucleotide resolution </h4> <ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Hongyang Li</span><span class="cit-sep cit-sep-two-item-separator"> and</span></li> <li class="last-item"><span class="cit-auth cit-auth-type-author">Yuanfang Guan</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">April 2021 </span><span class="cit-vol">31<span class="cit-sep cit-sep-after-article-vol">: </span></span><span class="cit-pages"><span class="cit-first-page">721</span><span class="cit-sep">-</span><span class="cit-last-page">731</span></span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>March 19, 2021<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.269613.120 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/31/4/721.abstract" rel="abstract">Abstract</a></li> <li><a href="/content/31/4/721.full" rel="full-text">Full Text</a></li> <li><a href="/content/31/4/721.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> <li class="last-item"><a href="/content/31/4/721/suppl/DC1" rel="supplemental-data" class="dslink-supplemental-material">Supplemental Material</a></li> </ul> </div> </li> </ul> </div> <div class="gca-buttons"> <input type="reset" name="reset" value="Clear" /> <input type="submit" name="submit" value="Get All Checked Abstracts" /> </div> <div class="toc-level level1 pub-section-Resource no-children no-parent"> <h2 id="Resource"><span><a class="toc-section-return" href="#content-block"></a>Resource</span></h2> <ul class="cit-list"> <li class="cit creative-commons creative-commons-by-nc/4.0/ has-earlier-version toc-cit"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;31/4/732" /><label for="gca-form-cb-d1483518e143Resource">Select this article</label></div> <div class="cit-metadata"> <h4 class="cit-first-element cit-title-group">Transcription initiation mapping in 31 bovine tissues reveals complex promoter activity, pervasive transcription, and tissue-specific promoter usage </h4> <ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Daniel E. Goszczynski</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Michelle M. Halstead</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Alma D. Islas-Trejo</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Huaijun Zhou</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Pablo J. Ross</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">April 2021 </span><span class="cit-vol">31<span class="cit-sep cit-sep-after-article-vol">: </span></span><span class="cit-pages"><span class="cit-first-page">732</span><span class="cit-sep">-</span><span class="cit-last-page">744</span></span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>March 15, 2021<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.267336.120 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/31/4/732.abstract" rel="abstract">Abstract</a></li> <li><a href="/content/31/4/732.full" rel="full-text">Full Text</a></li> <li><a href="/content/31/4/732.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> <li class="last-item"><a href="/content/31/4/732/suppl/DC1" rel="supplemental-data" class="dslink-supplemental-material">Supplemental Material</a></li> </ul> </div> </li> </ul> </div> <div class="gca-buttons"> <input type="reset" name="reset" value="Clear" /> <input type="submit" name="submit" value="Get All Checked Abstracts" /> </div> <div class="toc-level level1 pub-section-Corrigendum last-item no-children no-parent"> <h2 id="Corrigendum"><span><a class="toc-section-return" href="#content-block"></a>Corrigendum</span></h2> <ul class="cit-list"> <li class="cit openaccess toc-cit"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;31/4/745" /><label for="gca-form-cb-d1483518e152Corrigendum">Select this article</label></div> <div class="cit-metadata"> <h4 class="cit-first-element cit-title-group">Corrigendum: Benchmark and integration of resources for the estimation of human transcription factor activities </h4> <ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Luz Garcia-Alonso</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Christian H. Holland</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Mahmoud M. 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Table of Contents — April 2021, 31 (4)