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is-grey tooltip is-tooltip-top" data-tooltip="Machine Learning">cs.LG</span> <span class="tag is-small is-grey tooltip is-tooltip-top" data-tooltip="Multiagent Systems">cs.MA</span> <span class="tag is-small is-grey tooltip is-tooltip-top" data-tooltip="Social and Information Networks">cs.SI</span> </div> </div> <p class="title is-5 mathjax"> COVI-AgentSim: an Agent-based Model for Evaluating Methods of Digital Contact Tracing </p> <p class="authors"> <span class="search-hit">Authors:</span> <a href="/search/cs?searchtype=author&amp;query=Gupta%2C+P">Prateek Gupta</a>, <a href="/search/cs?searchtype=author&amp;query=Maharaj%2C+T">Tegan Maharaj</a>, <a href="/search/cs?searchtype=author&amp;query=Weiss%2C+M">Martin Weiss</a>, <a href="/search/cs?searchtype=author&amp;query=Rahaman%2C+N">Nasim Rahaman</a>, <a href="/search/cs?searchtype=author&amp;query=Alsdurf%2C+H">Hannah Alsdurf</a>, <a href="/search/cs?searchtype=author&amp;query=Sharma%2C+A">Abhinav Sharma</a>, <a href="/search/cs?searchtype=author&amp;query=Minoyan%2C+N">Nanor Minoyan</a>, <a href="/search/cs?searchtype=author&amp;query=Harnois-Leblanc%2C+S">Soren Harnois-Leblanc</a>, <a href="/search/cs?searchtype=author&amp;query=Schmidt%2C+V">Victor Schmidt</a>, <a href="/search/cs?searchtype=author&amp;query=Charles%2C+P+S">Pierre-Luc St. Charles</a>, <a href="/search/cs?searchtype=author&amp;query=Deleu%2C+T">Tristan Deleu</a>, <a href="/search/cs?searchtype=author&amp;query=Williams%2C+A">Andrew Williams</a>, <a href="/search/cs?searchtype=author&amp;query=Patel%2C+A">Akshay Patel</a>, <a href="/search/cs?searchtype=author&amp;query=Qu%2C+M">Meng Qu</a>, <a href="/search/cs?searchtype=author&amp;query=Bilaniuk%2C+O">Olexa Bilaniuk</a>, <a href="/search/cs?searchtype=author&amp;query=Caron%2C+G+M">Ga茅tan Marceau Caron</a>, <a href="/search/cs?searchtype=author&amp;query=Carrier%2C+P+L">Pierre Luc Carrier</a>, <a href="/search/cs?searchtype=author&amp;query=Ortiz-Gagn%C3%A9%2C+S">Satya Ortiz-Gagn茅</a>, <a href="/search/cs?searchtype=author&amp;query=Rousseau%2C+M">Marc-Andre Rousseau</a>, <a href="/search/cs?searchtype=author&amp;query=Buckeridge%2C+D">David Buckeridge</a>, <a href="/search/cs?searchtype=author&amp;query=Ghosn%2C+J">Joumana Ghosn</a>, <a href="/search/cs?searchtype=author&amp;query=Zhang%2C+Y">Yang Zhang</a>, <a href="/search/cs?searchtype=author&amp;query=Sch%C3%B6lkopf%2C+B">Bernhard Sch枚lkopf</a>, <a href="/search/cs?searchtype=author&amp;query=Tang%2C+J">Jian Tang</a>, <a href="/search/cs?searchtype=author&amp;query=Rish%2C+I">Irina Rish</a> , et al. (4 additional authors not shown) </p> <p class="abstract mathjax"> <span class="has-text-black-bis has-text-weight-semibold">Abstract</span>: <span class="abstract-short has-text-grey-dark mathjax" id="2010.16004v1-abstract-short" style="display: inline;"> The rapid global spread of COVID-19 has led to an unprecedented demand for effective methods to mitigate the spread of the disease, and various digital contact tracing (DCT) methods have emerged as a component of the solution. In order to make informed public health choices, there is a need for tools which allow evaluation and comparison of DCT methods. We introduce an agent-based compartmental si&hellip; <a class="is-size-7" style="white-space: nowrap;" onclick="document.getElementById('2010.16004v1-abstract-full').style.display = 'inline'; document.getElementById('2010.16004v1-abstract-short').style.display = 'none';">&#9661; More</a> </span> <span class="abstract-full has-text-grey-dark mathjax" id="2010.16004v1-abstract-full" style="display: none;"> The rapid global spread of COVID-19 has led to an unprecedented demand for effective methods to mitigate the spread of the disease, and various digital contact tracing (DCT) methods have emerged as a component of the solution. In order to make informed public health choices, there is a need for tools which allow evaluation and comparison of DCT methods. We introduce an agent-based compartmental simulator we call COVI-AgentSim, integrating detailed consideration of virology, disease progression, social contact networks, and mobility patterns, based on parameters derived from empirical research. We verify by comparing to real data that COVI-AgentSim is able to reproduce realistic COVID-19 spread dynamics, and perform a sensitivity analysis to verify that the relative performance of contact tracing methods are consistent across a range of settings. We use COVI-AgentSim to perform cost-benefit analyses comparing no DCT to: 1) standard binary contact tracing (BCT) that assigns binary recommendations based on binary test results; and 2) a rule-based method for feature-based contact tracing (FCT) that assigns a graded level of recommendation based on diverse individual features. We find all DCT methods consistently reduce the spread of the disease, and that the advantage of FCT over BCT is maintained over a wide range of adoption rates. Feature-based methods of contact tracing avert more disability-adjusted life years (DALYs) per socioeconomic cost (measured by productive hours lost). Our results suggest any DCT method can help save lives, support re-opening of economies, and prevent second-wave outbreaks, and that FCT methods are a promising direction for enriching BCT using self-reported symptoms, yielding earlier warning signals and a significantly reduced spread of the virus per socioeconomic cost. <a class="is-size-7" style="white-space: nowrap;" onclick="document.getElementById('2010.16004v1-abstract-full').style.display = 'none'; document.getElementById('2010.16004v1-abstract-short').style.display = 'inline';">&#9651; Less</a> </span> </p> <p class="is-size-7"><span class="has-text-black-bis has-text-weight-semibold">Submitted</span> 29 October, 2020; <span class="has-text-black-bis has-text-weight-semibold">originally announced</span> October 2020. </p> </li> <li class="arxiv-result"> <div class="is-marginless"> <p class="list-title is-inline-block"><a href="https://arxiv.org/abs/1711.09713">arXiv:1711.09713</a> <span>&nbsp;[<a href="https://arxiv.org/pdf/1711.09713">pdf</a>, <a href="https://arxiv.org/format/1711.09713">other</a>]&nbsp;</span> </p> <div class="tags is-inline-block"> <span class="tag is-small is-link tooltip is-tooltip-top" data-tooltip="Software Engineering">cs.SE</span> <span class="tag is-small is-grey tooltip is-tooltip-top" data-tooltip="Distributed, Parallel, and Cluster Computing">cs.DC</span> </div> </div> <p class="title is-5 mathjax"> Boutiques: a flexible framework for automated application integration in computing platforms </p> <p class="authors"> <span class="search-hit">Authors:</span> <a href="/search/cs?searchtype=author&amp;query=Glatard%2C+T">Tristan Glatard</a>, <a href="/search/cs?searchtype=author&amp;query=Kiar%2C+G">Gregory Kiar</a>, <a href="/search/cs?searchtype=author&amp;query=Aumentado-Armstrong%2C+T">Tristan Aumentado-Armstrong</a>, <a href="/search/cs?searchtype=author&amp;query=Beck%2C+N">Natacha Beck</a>, <a href="/search/cs?searchtype=author&amp;query=Bellec%2C+P">Pierre Bellec</a>, <a href="/search/cs?searchtype=author&amp;query=Bernard%2C+R">R茅mi Bernard</a>, <a href="/search/cs?searchtype=author&amp;query=Bonnet%2C+A">Axel Bonnet</a>, <a href="/search/cs?searchtype=author&amp;query=Camarasu-Pop%2C+S">Sorina Camarasu-Pop</a>, <a href="/search/cs?searchtype=author&amp;query=Cervenansky%2C+F">Fr茅d茅ric Cervenansky</a>, <a href="/search/cs?searchtype=author&amp;query=Das%2C+S">Samir Das</a>, <a href="/search/cs?searchtype=author&amp;query=da+Silva%2C+R+F">Rafael Ferreira da Silva</a>, <a href="/search/cs?searchtype=author&amp;query=Flandin%2C+G">Guillaume Flandin</a>, <a href="/search/cs?searchtype=author&amp;query=Girard%2C+P">Pascal Girard</a>, <a href="/search/cs?searchtype=author&amp;query=Gorgolewski%2C+K+J">Krzysztof J. Gorgolewski</a>, <a href="/search/cs?searchtype=author&amp;query=Guttmann%2C+C+R+G">Charles R. G. Guttmann</a>, <a href="/search/cs?searchtype=author&amp;query=Hayot-Sasson%2C+V">Val茅rie Hayot-Sasson</a>, <a href="/search/cs?searchtype=author&amp;query=Quirion%2C+P">Pierre-Olivier Quirion</a>, <a href="/search/cs?searchtype=author&amp;query=Rioux%2C+P">Pierre Rioux</a>, <a href="/search/cs?searchtype=author&amp;query=Rousseau%2C+M">Marc-Eienne Rousseau</a>, <a href="/search/cs?searchtype=author&amp;query=Evans%2C+A+C">Alan C. Evans</a> </p> <p class="abstract mathjax"> <span class="has-text-black-bis has-text-weight-semibold">Abstract</span>: <span class="abstract-short has-text-grey-dark mathjax" id="1711.09713v1-abstract-short" style="display: inline;"> We present Boutiques, a system to automatically publish, integrate and execute applications across computational platforms. Boutiques applications are installed through software containers described in a rich and flexible JSON language. A set of core tools facilitate the construction, validation, import, execution, and publishing of applications. Boutiques is currently supported by several distinc&hellip; <a class="is-size-7" style="white-space: nowrap;" onclick="document.getElementById('1711.09713v1-abstract-full').style.display = 'inline'; document.getElementById('1711.09713v1-abstract-short').style.display = 'none';">&#9661; More</a> </span> <span class="abstract-full has-text-grey-dark mathjax" id="1711.09713v1-abstract-full" style="display: none;"> We present Boutiques, a system to automatically publish, integrate and execute applications across computational platforms. Boutiques applications are installed through software containers described in a rich and flexible JSON language. A set of core tools facilitate the construction, validation, import, execution, and publishing of applications. Boutiques is currently supported by several distinct virtual research platforms, and it has been used to describe dozens of applications in the neuroinformatics domain. We expect Boutiques to improve the quality of application integration in computational platforms, to reduce redundancy of effort, to contribute to computational reproducibility, and to foster Open Science. <a class="is-size-7" style="white-space: nowrap;" onclick="document.getElementById('1711.09713v1-abstract-full').style.display = 'none'; document.getElementById('1711.09713v1-abstract-short').style.display = 'inline';">&#9651; Less</a> </span> </p> <p class="is-size-7"><span class="has-text-black-bis has-text-weight-semibold">Submitted</span> 7 November, 2017; <span class="has-text-black-bis has-text-weight-semibold">originally announced</span> November 2017. </p> <p class="comments is-size-7"> <span class="has-text-black-bis has-text-weight-semibold">Comments:</span> <span class="has-text-grey-dark mathjax">10 pages</span> </p> </li> </ol> <div class="is-hidden-tablet"> <!-- feedback for mobile only --> <span class="help" style="display: inline-block;"><a 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