Bacteriome.org

<html> <head> <meta http-equiv="content-type" content="text/html; charset=iso-8859-1" /> <title>Bacteriome.org</title> <link rel="stylesheet" type="text/css" href="theme/defaults.css"> <link rel="stylesheet" type="text/css" href="theme/style.css"> <link rel="stylesheet" type="text/css" href="include/search.css"> <style>u { text-decoration:none!important; font-style:italic!important; }</style> </head> <body id="home"> <div id="page" class="one-sidebar"> <div id="header"> <div id="logo-title"> <img src="theme/image/logo.png" alt="Home" id="logo"> </div> <div class="menu withprimary"> <div id="primary" class="clear-block"> <ul class="links-menu"> <li><a href="./index.php">Home</a></li> <li><a href="./people.php">People</a></li> <li><a href="./help.php">Help</a></li> <li><a href="./sptext.php">Search</a></li> </ul> </div> </div> </div> <div id="container" class="withleft clear-block"> <div id="main-wrapper"> <div id="main" class="clear-block"> <div class="node sticky" id="node-1"> <h2 class="title"><? echo $GLOBALS[PAGETITLE]; ?></h2><br> <div class="content"> <style type="text/css"> .searchbox { border:thick solid #DDE3ED; width:500px; padding:20px; } </style> <div align='center'> <table> <tr> <td class="searchbox">  <div class="headtext">Bacteriome.org</div><br /> Bacteriome.org is a database integrating physical (protein-protein) and functional interactions within the context of an E. coli knowledgebase. Presently the resource offers access to two types of network:<br> <li>A network of functional interactions derived through exploiting available functional genomic datasets within a Bayesian framework</li> <li>Two networks of experimentally derived protein-protein interactions - a 'core' network consisting of interactions deemed to be of 'high quality'; and an 'extended' network which extends the 'core' network by including interactions for which experimental evidence is less strong.</li> <FORM><center> <INPUT TYPE="BUTTON" VALUE="Download Datasets" ONCLICK="window.location.href='http://www.compsysbio.org/bacteriome/download.php'"> </center></FORM> These <a href="help.php?page=15">datasets</a> may be searched directly using the keyword search box below, or by the different search methods found on the left sidebar under <b>Search Methods</b>. Help on the different search methods are found on the <b><a href="help.php">Help pages</a>  </td> <td rowspan="2" style="padding:20px;">  <b>Project Detail</b><br /> <p><div style='float:left;' align='center'><img src='img/screenshot4.png'></div> A key feature of the biological organization in all organisms is the tendency of proteins that function in common pathways to physically associate via stable protein-protein interactions (PPI) to form larger macromolecular assemblies or complexes (sometimes known as molecular machines). These complexes are often linked together by extended networks of weaker, transient PPI, to form extended networks or neighbourhoods that integrate pathways mediating the major cellular processes<a href="projectdetail.php">..... (more information)</a></p>  </td> </tr> <tr> <td class="searchbox" valign="top">  <div class="headtext">Keyword Search For Genes/Proteins:</div><br /> The keyword can range from gene names (e.g. 'clpX'), to protein domains (e.g. 'PF07724' or 'P-loop containing') and functional categories (e.g. 'kinase' or 'translocase'). It can be a whole word, part of a word, or a combination of words. The search is case in-sensitive<br /><br /> <form action="search/searchtext.php" style="text-align:center;"> <input type="text" name="wild_search" style="font-size:12pt;" /> <input type="submit" value="Search" style="font-size:12pt;" /><br /> <span class="help">e.g. clpX or kinase</span> </form> <br />  </td> </tr> </table> </div> </div> </div> </div> </div> <div id="sidebar-left" class="sidebar"> <div class="block block-menu" id="block-menu-55"> <div class="blockinner"> <h2 class="title"> Navigation </h2> <div class="content"> <ul class="menu"> <li class="leaf"><a href="./index.php">Home</a></li> <li class="leaf"><a href="./statistics.php">Database Statistics</a></li> <li class="leaf"><a href="./projectdetail.php">Project Details</a></li> <li class="leaf"><a href="./download.php">Download Datasets</a></li> <li class="leaf"><a href="./people.php">People</a></li> <li class="leaf"><a href="./help.php">Help</a></li> <li class="leaf"><a href="http://www.compsysbio.org">Parkinson Lab</a></li> </ul> </div> </div> </div> <div class="block block-menu" id="block-menu-55"> <div class="blockinner"> <h2 class="title"> Search Methods </h2> <div class="content"> <ul class="menu"> <li class="leaf"><a href="./sptext.php">Wild Search:</a><br> <form action="search/searchtext.php" method="get"> <input type="text" id="txtWildSearch" name="wild_search" onClick="this.select();" value="<? echo (strlen($_GET['wild_search']) == 0)?("enter keyword here"):($_GET['wild_search']); ?>"> </form> </li> <li class="leaf"><a href="./sptext.php">Text Search</a></li> <li class="leaf"><a href="./spprofile.php">Phylogenetic Profile Search</a></li> <li class="leaf"><a href="./chromodisplay.php?table=mg1655&max=4639651">Chromosome Coordinate Search</a></li> <li class="leaf"><a href="./spblast.php">BLAST Similarity</a></li> <li class="leaf">Browse network of complexes/functional modules - dataset:<br> <a href="./spcomplex.php?dataset=core">'Core' (experimental)</a> <a href="./spcomplex.php?dataset=functional">Functional (theoretical)</a> <a href="./spcomplex_combined.php?dataset=combined">Combined (theoretical+experimental)</a></li> </ul> </div> </div> </div> <div class="block block-block" id="block-block-2"> <div class="blockinner"> <h2 class="title"> Funding </h2> <div class="content"> <a href="http://www.cihr.ca/"><img src="img/cihr_logo_big_e.gif" width=150></a><br /> </div> </div> </div> <div class="block block-block" id="block-block-2"> <div class="blockinner"> <h2 class="title"> Quick Links </h2> <div class="content"> <ul class="menu"> <li><a href="http://www.compsysbio.org/lab/">Parkinson Lab</a></li> <li><a href="http://www.partigenedb.org/">PartiGeneDB</a></li> <li><a href="http://theileria.ccb.sickkids.ca/elastin">ElastoDB</a></li> <li><a href="http://www.sickkids.ca/">Sick Kids</a></li> <li><a href="http://www.nematodes.org/">Nematodes.org</a></li> <li><a href="http://www.sanger.ac.uk/">Sanger Center</a></li> <li><a href="http://www.ebi.ac.uk/">EBI</a></li> <li><a href="http://www.ncbi.nlm.nih.gov/">NCBI</a></li> <li><a href="http://www.tigr.org/">TIGR</a></li> <li><a href="http://riweb.sickkids.ca/ccb/index.html">Centre for Computational Biology at Sick Kids</a></li> <li><a href="http://www.utoronto.ca/">University of Toronto</a></li> </ul> </div> </div> </div> </div> </div> <div id="footer"> </div> </div> </body> </html>

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Bacteriome.org