RCSB PDB: Publications

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Some articles may require a subscription for access. Information on citing the RCSB PDB and related resources is <a href="/pages/policies#References">available</a>. <h2>2025</h2> <div class="row"> <div class="col-xs-12 JournalCovers"> <a target="_blank" rel="noopener" href="http://doi.org/10.1017/S0033583525000034" alt="Image on the cover of the journal Current Opinion in Structural Biology containing the article Protein data bank: Fifty-three years young and having a transformative impact on science and society"> <img src="v2/secondary/journalcover_images/quarterly-reviews-biophysics.jpg"></a> <a target="_blank" rel="noopener" href="http://doi.org/10.1016/j.sbi.2024.102954" alt="Image on the cover of the journal Current Opinion in Structural Biology containing the article Protein data bank: From two epidemics to the global pandemic to mRNA vaccines and Paxlovid"> <img src="v2/secondary/journalcover_images/current-opinion-sb.png" ></a> <a target="_blank" rel="noopener" href="https://doi.org/10.1093/nar/gkae1091" alt="Image on the cover of the journal Nucleic Acids Research containing the article Updated resources for exploring experimentally-determined PDB structures and Computed Structure Models at the RCSB Protein Data Bank"> <img src="v2/secondary/journalcover_images/nar-20.png" ></a> </div> </div> <div class="row publications"> <ul class="col-sm-6 col-xs-12"> <li> Protein Data Bank (PDB): Fifty-three years young and having a transformative impact on science and society (2025) Quarterly Reviews of Biophysics 58: e9; doi: <a href="http://doi.org/10.1017/S0033583525000034" target="_blank" rel="noopener">10.1017/S0033583525000034</a> </li> <li> Protein data bank: From two epidemics to the global pandemic to mRNA vaccines and Paxlovid (2025) Current Opinion in Structural Biology 90: 102954; doi: <a href="http://doi.org/10.1016/j.sbi.2024.102954" target="_blank" rel="noopener">10.1016/j.sbi.2024.102954</a> </li> <li> Updated resources for exploring experimentally-determined PDB structures and Computed Structure Models at the RCSB Protein Data Bank (2025) Nucleic Acids Research 53: D564–D574; doi: <a href="https://doi.org/10.1093/nar/gkae1091" target="_blank" rel="noopener">10.1093/nar/gkae1091</a> </li> <li> BindingDB in 2024: a FAIR knowledgebase of protein-small molecule binding data (2025) Nucleic Acids Research 53: D1633–D1644; doi: <a href="https://doi.org/10.1093/nar/gkae1075" target="_blank" rel="noopener">10.1093/nar/gkae1075</a> </li> </ul> </div> <h2>2024</h2> <div class="row"> <div class="col-xs-12 JournalCovers"> <a target="_blank" rel="noopener" href="http://doi.org/10.1016/j.patter.2024.100931" alt="Image on the cover of the journal containing the article Folding paper models of biostructures for outreach and education (2024) Patterns 5: 100931"> <img src="v2/secondary/journalcover_images/patterns-cover.jpg" ></a> <a target="_blank" rel="noopener" href="http://doi.org/10.1107/S2052252524001246" alt="Image on the cover of IUCr Jounal, issue 11 (2024) containing the article Community recommendations on cryoEM data archiving and validation"> <img src="v2/secondary/journalcover_images/IUCRJ-cover-issue-11-24.png" ></a> <a target="_blank" rel="noopener" href="http://doi.org/10.1107/S2052252524002604" alt="Image on the cover of IUCr Jounal, issue 11 (2024) containing the article RCSB Protein Data Bank: supporting research and education worldwide through explorations of experimentally determined and computationally predicted atomic level 3D biostructures"> <img src="v2/secondary/journalcover_images/bigiucrj.png" ></a> <a target="_blank" rel="noopener" href="http://doi.org/10.1093/database/baae041" alt="Image on the cover of Database Jounal, 2024 issue, containing the article PDB NextGen Archive: centralizing access to integrated annotations and enriched structural information by the Worldwide Protein Data Bank"> <img src="v2/secondary/journalcover_images/database-journal.png" ></a> <a target="_blank" rel="noopener" href="http://doi.org/10.1016/j.str.2024.02.011" alt="Image on the cover of Structure Jounal, 2024 issue, containing the article Restraint Validation of Biomolecular Structures Determined by NMR in the Protein Data Bank"> <img src="v2/secondary/journalcover_images/structure-32-2024.png" ></a> <a target="_blank" rel="noopener" href="http://doi.org/10.1093/bioinformatics/btae370" alt="Image on the cover of Bioinformatics Jounal containing the article RCSB Protein Data Bank: Exploring protein 3D similarities via comprehensive structural alignments"> <img src="v2/secondary/journalcover_images/bioinformatics40.jpg" ></a> <a target="_blank" rel="noopener" href="https://doi.org/10.1038/s41388-024-03077-2" alt="Image on the cover of Oncogene Journal containing the article Impact of structural biology and the Protein Data Bank on US FDA new drug approvals of low molecular weight antineoplastic agents 2019-2023"> <img src="v2/secondary/journalcover_images/oncogene.png" ></a> <a target="_blank" rel="noopener" href="https://doi.org/10.1038/s41592-024-02321-7" alt="Image on the cover of Nature Methods Journal containing the article Outcomes of the EMDataResource cryo-EM Ligand Modeling Challenge"> <img src="v2/secondary/journalcover_images/nature-methods-21.png" ></a> <a target="_blank" rel="noopener" href="https://doi.org/10.1002/cpz1.1099" alt="Image on the cover of Current Protocols Journal containing the article Describing and sharing molecular visualizations using the MolViewSpec toolkit"> <img src="v2/secondary/journalcover_images/current-prots-4.jpg" ></a> <a target="_blank" rel="noopener" href="https://doi.org/10.1093/bioadv/vbae111" alt="Image on the cover of Bioinformatics Advances containing the article ZMPY3D: accelerating protein structure volume analysis through vectorized 3D Zernike moments and Python-based GPU integration"> <img src="v2/secondary/journalcover_images/bioinformatics-advances_cover.png" ></a> <a target="_blank" rel="noopener" href="https://doi.org/10.1016/j.jmb.2024.168546" alt="Image on the cover of Journal of Molecular Biology containing the article ZMPY3D: accelerating protein structure volume analysis through vectorized 3D Zernike moments and Python-based GPU integration"> <img src="v2/secondary/journalcover_images/JMB-cover.png" ></a> <a target="_blank" rel="noopener" href="https://doi.org/10.1128/jmbe.00019-24" alt="Image on the cover of Journal of Microbiology and Biology Education containing the article Using augmented reality in molecular case studies to enhance biomolecular structure-function explorations in undergraduate classrooms"> <img src="v2/secondary/journalcover_images/jmbe.png" ></a> </div> </div> <div class="row publications"> <ul class="col-sm-6 col-xs-12"> <li> Restraint Validation of Biomolecular Structures Determined by NMR in the Protein Data Bank (2024) bioRxiv 2024.01.15.575520; doi: <a href="http://doi.org/10.1101/2024.01.15.575520" target="_blank" rel="noopener" >10.1101/2024.01.15.575520</a> </li> <li> Community recommendations on cryoEM data archiving and validation (2024) IUCrJ 11: 140-151; doi: <a href="http://doi.org/10.1107/S2052252524001246" target="_blank" rel="noopener" >10.1107/S2052252524001246</a> </li> <li> PDB NextGen Archive: centralizing access to integrated annotations and enriched structural information by the Worldwide Protein Data Bank (2024) Database 2024: baae041 doi: <a href="http://doi.org/10.1093/database/baae041" target="_blank" rel="noopener" >10.1093/database/baae041</a> </li> <li> RCSB Protein Data Bank: Exploring protein 3D similarities via comprehensive structural alignments (2024) Bioinformatics 40: btae370 doi: <a href="http://doi.org/10.1093/bioinformatics/btae370" target="_blank" rel="noopener" >10.1093/bioinformatics/btae370</a> </li> <li> Outcomes of the EMDataResource cryo-EM Ligand Modeling Challenge (2024) Nat Methods 21: 1340–1348 doi: <a href="https://doi.org/10.1038/s41592-024-02321-7" target="_blank" rel="noopener">10.1038/s41592-024-02321-7</a> </li> <li> ZMPY3D: accelerating protein structure volume analysis through vectorized 3D Zernike moments and Python-based GPU integration (2024) Bioinformatics Advances 4: vbae111 doi: <a href="https://doi.org/10.1093/bioadv/vbae111" target="_blank" rel="noopener">10.1093/bioadv/vbae111</a> </li> <li> IHMCIF: An Extension of the PDBx/mmCIF Data Standard for Integrative Structure Determination Methods (2024) Journal of Molecular Biology 436: 168546 doi: <a href="https://doi.org/10.1016/j.jmb.2024.168546" target="_blank" rel="noopener">10.1016/j.jmb.2024.168546</a> </li> </ul> <ul class="col-sm-6 col-xs-12"> <li> Folding paper models of biostructures for outreach and education (2024) Patterns 5: 100931; doi: <a href="http://doi.org/10.1016/j.patter.2024.100931" target="_blank" rel="noopener" >10.1016/j.patter.2024.100931</a> </li> <li> RCSB Protein Data Bank: supporting research and education worldwide through explorations of experimentally determined and computationally predicted atomic level 3D biostructures (2024) IUCrJ 11: 279-286; doi: <a href="http://doi.org/10.1107/S2052252524002604" target="_blank" rel="noopener" >10.1107/S2052252524002604</a> </li> <li> Restraint Validation of Biomolecular Structures Determined by NMR in the Protein Data Bank (2024) Structure 32: 824-837.e1 doi: <a href="http://doi.org/10.1016/j.str.2024.02.011" target="_blank" rel="noopener" >10.1016/j.str.2024.02.011</a> </li> <li> Impact of structural biology and the Protein Data Bank on US FDA new drug approvals of low molecular weight antineoplastic agents 2019–2023 (2024) Oncogene 43: 2229-2243 doi: <a href="https://doi.org/10.1038/s41388-024-03077-2" target="_blank" rel="noopener">10.1038/s41388-024-03077-2 </a> </li> <li> Describing and sharing molecular visualizations using the MolViewSpec toolkit (2024) Current Protocols 4: e1099. doi: <a href="https://doi.org/10.1002/cpz1.1099" target="_blank" rel="noopener">10.1002/cpz1.1099</a> </li> <li> Generative artificial intelligence performs rudimentary structural biology modeling (2024) Sci Rep 14: 19372 doi: <a href="https://doi.org/10.1038/s41598-024-69021-2" target="_blank" rel="noopener">10.1038/s41598-024-69021-2</a> </li> <li> Using augmented reality in molecular case studies to enhance biomolecular structure-function explorations in undergraduate classrooms (2024) J Microbiol Biol Educ. 25: e00019-24 doi: <a href="https://doi.org/10.1128/jmbe.00019-24" target="_blank" rel="noopener">10.1128/jmbe.00019-24</a> </li> </ul> </div> <h2>2023</h2> <div class="row"> <div class="col-xs-12 JournalCovers"> <a target="_blank" rel="noopener" href="http://doi.org/10.1093/nar/gkac1077" alt="Image on the cover of the journal containing the article (2023) Nucleic Acids Research 51: D488–D508 doi: 10.1002/pro.4213 and 31: 129-140 10.1093/nar/gkac1077"> <img src="v2/secondary/journalcover_images/2023_Nucleic_Acids.gif" ></a> <a target="_blank" rel="noopener" href="http://doi.org/10.1002/bmb.21699" alt="Image on the cover of the journal containing the article (2023) BAMBed 51:137-145 31: 129-140 10.1002/bmb.21699"> <img src="v2/secondary/journalcover_images/bioche2022.jpg" ></a> <a target="_blank" rel="noopener" href="http://doi.org/10.1002/pro.4577" alt="Image on the cover of the journal containing the article (2023) Protein Science 32:e4577 10.1002/pro.4577"> <img src="v2/secondary/journalcover_images/proteinScience.png" ></a> <a target="_blank" rel="noopener" href="http://doi.org/10.1016/j.jmb.2023.168021" alt="Image on the cover of the journal containing the article (2023) Protein Science 32:e4577 10.1002/pro.4577"> <img src="v2/secondary/journalcover_images/JMBJuly2023.jpg" ></a> <a target="_blank" rel="noopener" href="http://doi.org/10.1107/S2059798323006381 " alt="Image on the cover of the journal containing the article (2023) Acta Cryst 10.1107/S2059798323006381 "> <img src="v2/secondary/journalcover_images/ActaCrystD2023-cover.png" ></a> <a target="_blank" rel="noopener" href="https://doi.org/10.1016/j.str.2023.10.002" alt="Image on the cover of the Structure journal containing the article The next decade in structural biology"> <img src="v2/secondary/journalcover_images/structure-30years.jpg" ></a> <a target="_blank" rel="noopener" href="https://doi.org/10.1109/MCG.2023.3250680" alt="Image on the cover of IEEE Computer Graphics and Appllications containing the article Changing Aesthetics in Biomolecular Graphics"> <img src="v2/secondary/journalcover_images/4computer-graphics-cover.png" ></a> </div> </div> <div class="row publications"> <ul class="col-sm-6 col-xs-12"> <li> RCSB Protein Data Bank (RCSB.org): delivery of experimentally-determined PDB structures alongside one million computed structure models of proteins from artificial intelligence/machine learning (2023) Nucleic Acids Research 51: D488–D508 doi: <a href="http://doi.org/10.1093/nar/gkac1077" target="_blank" rel="noopener" >10.1093/nar/gkac1077</a> </li> <li> A comprehensive survey of coronaviral main protease active site diversity in 3D: Identifying and analyzing drug discovery targets in search of broad specificity inhibitors for the next coronavirus pandemic (2023) bioRxiv doi: <a href="http://doi.org/10.1101/2023.01.30.526101" target="_blank" rel="noopener" >10.1101/2023.01.30.526101</a> </li> <li> An idea to explore: How an interdisciplinary undergraduate course exploring a global health challenge in molecular detail enabled science communication and collaboration in diverse audiences (2023) BAMBed 51:137-145 doi: <a href="http://doi.org/10.1002/bmb.21699" target="_blank" rel="noopener" >10.1002/bmb.21699</a> </li> <li> Integrative visualization of the molecular structure of a cellular microdomain (2023) Protein Science 32:e4577 doi: <a href="http://doi.org/10.1002/pro.4577" target="_blank" rel="noopener" >10.1002/pro.4577</a> </li> <li> RCSB Protein Data Bank: Efficient Searching and Simultaneous Access to One Million Computed Structure Models Alongside the PDB Structures Enabled by Architectural Advances (2023) Journal of Molecular Biology 435: 167994 doi: <a href="http://doi.org/10.1016/j.jmb.2023.167994" target="_blank" rel="noopener" >10.1016/j.jmb.2023.167994</a> </li> <li> ModelCIF: An Extension of PDBx/mmCIF Data Representation for Computed Structure Models (2023) Journal of Molecular Biology 435: 168021 doi: <a href="http://doi.org/10.1016/j.jmb.2023.168021" target="_blank" rel="noopener" >10.1016/j.jmb.2023.168021</a> </li> </ul> <ul class="col-sm-6 col-xs-12"> <li> Announcing the launch of Protein Data Bank China as an Associate Member of the Worldwide Protein Data Bank Partnership (2023) Acta Cryst. D79 792-795 doi: <a href="http://doi.org/10.1107/S2059798323006381" target="_blank" rel="noopener" >10.1107/S2059798323006381</a> </li> <li> RCSB Protein Data Bank: visualizing groups of experimentally determined PDB structures alongside computed structure models of proteins (2023) Front. 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Scapin, D. Patel, E. Arnold, editors. Springer Science + Business Media Dordrecht, pp. 93-106 doi:<a target="_blank" rel="noopener" href="http://dx.doi.org/10.1007/978-94-017-9719-1_8">10.1007/978-94-017-9719-1_8</a> </li> <li> The RCSB Protein Data Bank: views of structural biology for basic and applied research and education (2015) Nucleic Acids Research 43(D1): D345-356 doi:<a target="_blank" rel="noopener" href="http://dx.doi.org/10.1093/nar/gku1214">10.1093/nar/gku1214</a> </li> <li> RCSB PDB Mobile: iOS and Android mobile apps to provide data access and visualization to the RCSB Protein Data Bank (2015) Bioinformatics 31: 126-127 doi:<a target="_blank" rel="noopener" href="http://dx.doi.org/10.1093/bioinformatics/btu596">10.1093/bioinformatics/btu596</a> </li> </ul> </div> <h2>2014</h2> <div class="row"> <div class="col-xs-12 JournalCovers"> <a target="_blank" rel="noopener" href="http://dx.doi.org/10.1093/database/bau116"> <img src="v2/secondary/journalcover_images/2013_Database.gif"> </a> <a target="_blank" rel="noopener" href="http://dx.doi.org/10.1093/bioinformatics/btu823"> <img src="v2/secondary/journalcover_images/2014_Bioinformatics.gif"> </a> <a target="_blank" rel="noopener" href="http://dx.doi.org/10.1002/bip.22434"> <img src="v2/secondary/journalcover_images/2014_Biopolymers.gif"> </a> <a target="_blank" rel="noopener" href="http://dx.doi.org/10.1007/s10822-014-9770-y"> <img src="v2/secondary/journalcover_images/2014_CAMolecularDesign.jpg"> </a> <a target="_blank" rel="noopener" href="http://dx.doi.org/10.1016/j.jmb.2014.03.010"> <img src="v2/secondary/journalcover_images/2014_JMB.gif"> </a> </div> </div> <div class="row publications"> <ul class="col-sm-6 col-xs-12"> <li> Detection of Circular Permutations within Protein Structures using CE-C (2014) Bioinformatics doi:<a target="_blank" rel="noopener" href="http://dx.doi.org/10.1093/bioinformatics/btu823">10.1093/bioinformatics/btu823</a> </li> <li> The Chemical Component Dictionary: complete descriptions of constituent molecules in experimentally determined 3D macromolecules in the Protein Data Bank (2014) Bioinformatics doi:<a target="_blank" rel="noopener" href="http://dx.doi.org/10.1093/bioinformatics/btu789">10.1093/bioinformatics/btu789</a> </li> <li> The Protein Data Bank archive as an open data resource (2014) Journal of Computer-Aided Molecular Design 28: 1009-1014 doi:<a target="_blank" rel="noopener" href="http://dx.doi.org/10.1007/s10822-014-9770-y">10.1007/s10822-014-9770-y</a> </li> <li> Systematic Detection of Internal Symmetry in Proteins Using CE-Symm (2014) Journal of Molecular Biology 426: 2255-2268 doi:<a target="_blank" rel="noopener" href="http://dx.doi.org/10.1016/j.jmb.2014.03.010">10.1016/j.jmb.2014.03.010</a> </li> </ul> <ul class="col-sm-6 col-xs-12"> <li> Small molecule annotation for the Protein Data Bank (2014) Database doi:<a target="_blank" rel="noopener" href="http://dx.doi.org/10.1093/database/bau116">10.1093/database/bau116</a> </li> <li> Improving the representation of peptide-like inhibitor and antibiotic molecules in the Protein Data Bank (2014) Biopolymers 101:659-668 doi:<a target="_blank" rel="noopener" href="http://dx.doi.org/10.1002/bip.22434">10.1002/bip.22434</a> </li> <li> Establishing the Next Generation of the Protein Data Bank (2014) The Winnower doi:<a target="_blank" rel="noopener" href="https://thewinnower.com/discussions/establishing-the-next-generation-of-the-protein-data-bank">10.15200/winn.140076.68556</a> </li> <li> Response to On prompt update of literature references in the Protein Data Bank (2014) Acta Cryst D70: 2780 doi:<a target="_blank" rel="noopener" href="http://dx.doi.org/10.1107/S1399004714020513">10.1107/S1399004714020513</a> </li> </ul> </div><h2>2013</h2> <div class="row"> <div class="col-xs-12 JournalCovers"> <a target="_blank" rel="noopener" href="http://dx.doi.org/10.1093/nar/gks1200"> <img src="v2/secondary/journalcover_images/2013_NucleicAcidResearch.gif"> </a> <a target="_blank" rel="noopener" href="http://dx.doi.org/10.1016/j.str.2013.07.010"> <img src="v2/secondary/journalcover_images/2013_Structure.gif"> </a> <a target="_blank" rel="noopener" href="http://dx.doi.org/10.1002/bip.22338"> <img src="v2/secondary/journalcover_images/2013_BiopolymerSecond.gif"> </a> <a target="_blank" rel="noopener" href="http://dx.doi.org/10.1016/j.str.2013.04.020"> <img src="v2/secondary/journalcover_images/2013_StructureSecond.gif"> </a> <a target="_blank" rel="noopener" href="http://dx.doi.org/10.1016/j.febslet.2012.12.029"> <img src="v2/secondary/journalcover_images/2013_FEBS.gif"> </a> <a target="_blank" rel="noopener" href="http://dx.doi.org/10.1002/bip.22132"> <img src="v2/secondary/journalcover_images/2013_Biopolymer.gif"> </a> <a target="_blank" rel="noopener" href="http://dx.doi.org/10.1107/S0907444913029168"> <img src="v2/secondary/journalcover_images/2013_ActaCrystallography.gif"> </a> <a target="_blank" rel="noopener" href="http://dx.doi.org/10.1093/database/bat079"> <img src="v2/secondary/journalcover_images/2013_Database.gif"> </a> </div> </div> <div class="row publications"> <ul class="col-sm-6 col-xs-12"> <li> The RCSB Protein Data Bank: new resources for research and education (2013) Nucleic Acids Research 41: D475-D482 doi:<a target="_blank" rel="noopener" href="http://dx.doi.org/10.1093/nar/gks1200">10.1093/nar/gks1200</a> </li> <li> Recommendations of the wwPDB NMR Validation Task Force (2013) Structure 21: 1563-1570 doi:<a target="_blank" rel="noopener" href="http://dx.doi.org/10.1016/j.str.2013.07.021">10.1016/j.str.2013.07.021</a> </li> <li> How community has shaped the Protein Data Bank (2013) Structure 21: 1485-1491 doi:<a target="_blank" rel="noopener" href="http://dx.doi.org/10.1016/j.str.2013.07.010">10.1016/j.str.2013.07.010</a> </li> <li> Revealing structural views of biology (2013) Biopolymers 99: 817-824 doi:<a target="_blank" rel="noopener" href="http://dx.doi.org/10.1002/bip.22338">10.1002/bip.22338</a> </li> <li> Report of the wwPDB Small-Angle Scattering Task Force: Data Requirements for Biomolecular Modeling and the PDB Structure (2013) Structure 21: 875-881 doi:<a target="_blank" rel="noopener" href="http://dx.doi.org/10.1016/j.str.2013.04.020">10.1016/j.str.2013.04.020</a> </li> <li> Trendspotting in the Protein Data Bank (2013) FEBS Lett. 587: 1036-45 doi:<a target="_blank" rel="noopener" href="http://dx.doi.org/10.1016/j.febslet.2012.12.029">10.1016/j.febslet.2012.12.029</a> </li> </ul> <ul class="col-sm-6 col-xs-12"> <li> The Future of the Protein Data Bank (2013) Biopolymers 99: 218-222 doi:<a target="_blank" rel="noopener" href="http://dx.doi.org/10.1002/bip.22132">10.1002/bip.22132</a> </li> <li> Comment on Timely deposition of macromolecular structures is necessary for peer review by Joosten et al. (2013) Acta Cryst D69: 2296 doi:<a target="_blank" rel="noopener" href="http://dx.doi.org/10.1107/S0907444913029168">10.1107/S0907444913029168</a> </li> <li> Comment on On the propagation of errors by Jaskolski (2013) Acta Cryst D69: 2297 doi:<a target="_blank" rel="noopener" href="http://dx.doi.org/10.1107/S090744491302917X">10.1107/S090744491302917X</a> </li> <li> Chemical annotation of small and peptide-like molecules at the Protein Data Bank (2013) Database doi:<a target="_blank" rel="noopener" href="http://dx.doi.org/10.1093/database/bat079">10.1093/database/bat079</a> </li> <li> The Twists and Turns of DNA (2013) The Biologist 60: 18-22. </li> </ul> </div> <h2>2012</h2> <div class="row"> <div class="col-xs-12 JournalCovers"> <a target="_blank" rel="noopener" href="http://dx.doi.org/10.1002/bmb.20636"> <img src="v2/secondary/journalcover_images/2012_Biochemistry.gif"> </a> <a target="_blank" rel="noopener" href="http://dx.doi.org/10.1002/bies.201200072"> <img src="v2/secondary/journalcover_images/2012_Bioessay.gif"> </a> <a target="_blank" rel="noopener" href="http://dx.doi.org/10.1002/pro.2154"> <img src="v2/secondary/journalcover_images/2012_ProteinScience.gif"> </a> <a target="_blank" rel="noopener" href="http://dx.doi.org/10.1093/bioinformatics/bts494"> <img src="v2/secondary/journalcover_images/2012_Bioinformatics.gif"> </a> <a target="_blank" rel="noopener" href="http://dx.doi.org/10.1016/j.str.2011.12.014"> <img src="v2/secondary/journalcover_images/2012_Structure.gif"> </a> <a target="_blank" rel="noopener" href="http://dx.doi.org/10.1016/j.str.2012.01.010"> <img src="v2/secondary/journalcover_images/2012_StructurePDB40.gif"> </a> <a target="_blank" rel="noopener" href="http://dx.doi.org/doi:10.1107/97809553602060000111"> <img src="v2/secondary/journalcover_images/2012_InternationalTables.gif"> </a> <a target="_blank" rel="noopener" href="http://dx.doi.org/10.1371/journal.pcbi.1002445"> <img src="v2/secondary/journalcover_images/PLOS-logo.jpg"> </a> </div> </div> <div class="row publications"> <ul class="col-sm-6 col-xs-12"> <li> Illustrating the Machinery of Life: Viruses (2012) Biochemistry and Molecular Biology Education 40: 291-296 doi:<a target="_blank" rel="noopener" href="http://dx.doi.org/10.1002/bmb.20636">10.1002/bmb.20636</a> </li> <li> Putting proteins in context: scientific illustrations bring together information from diverse sources to provide an integrative view of the molecular biology of cells (2012) Bioessays 34(9):718-20 doi:<a target="_blank" rel="noopener" href="http://dx.doi.org/10.1002/bies.201200072">10.1002/bies.201200072</a> </li> <li> Creating a community resource for protein science (2012) Protein Science 21: 1587-1596 doi:<a target="_blank" rel="noopener" href="http://dx.doi.org/10.1002/pro.2154">10.1002/pro.2154</a> </li> <li> BioJava: an open-source framework for bioinformatics in 2012 (2012) Bioinformatics 28: 2693-2695 doi:<a target="_blank" rel="noopener" href="http://dx.doi.org/10.1093/bioinformatics/bts494">10.1093/bioinformatics/bts494</a> </li> <li> Outcome of the first electron microscopy validation task force meeting (2012) Structure 20: 205-214 doi:<a target="_blank" rel="noopener" href="http://dx.doi.org/10.1016/j.str.2011.12.014">10.1016/j.str.2011.12.014</a> </li> </ul> <ul class="col-sm-6 col-xs-12"> <li> The Protein Data Bank at 40: Reflecting on the Past to Prepare for the Future (2012) Structure 20: 391-396 doi:<a target="_blank" rel="noopener" href="http://dx.doi.org/10.1016/j.str.2012.01.010">10.1016/j.str.2012.01.010</a> </li> <li> The Worldwide Protein Data Bank (2012) In International Tables for X-Ray Crystallography, Volume F: Crystallography of biological macromolecules E. Arnold, D. M. Himmel & M. G. Rossmann, editors Springer, Dordrecht, The Netherlands, pp. 827-832 doi:<a target="_blank" rel="noopener" href="http://dx.doi.org/doi:10.1107/97809553602060000111">10.1107/97809553602060000111</a> </li> <li> Circular Permutation in Proteins (2012) PLoS Comput Bio 8: e1002445 doi:<a target="_blank" rel="noopener" href="http://dx.doi.org/10.1371/journal.pcbi.1002445">10.1371/journal.pcbi.1002445</a> </li> <li> The Protein Data Bank (2012) in Leadership in Science and Technology: A Reference Handbook, William Sims Bainbridge, editor SAGE Publications, Inc., Thousand Oaks, CA., volume 2, pages 661-675. </li> </ul> </div><h2>2011</h2> <div class="row"> <div class="col-xs-12 JournalCovers"> <a target="_blank" rel="noopener" href="http://dx.doi.org/10.1093/nar/gkq1021"> <img src="v2/secondary/journalcover_images/2011_NucleicAcidResearch.gif"> </a> <a target="_blank" rel="noopener" href="http://dx.doi.org/10.3184/003685011X13201799666745 "> <img src="v2/secondary/journalcover_images/2011_ScienceProgress.gif"> </a> <a target="_blank" rel="noopener" href="http://dx.doi.org/10.1038/nsmb1211-1304"> <img src="v2/secondary/journalcover_images/2011_NatureMolecular.gif"> </a> <a target="_blank" rel="noopener" href="http://dx.doi.org/10.1002/prot.23196"> <img src="v2/secondary/journalcover_images/2011_Proteins.gif"> </a> <a target="_blank" rel="noopener" href="http://dx.doi.org/10.1016/j.str.2011.08.006"> <img src="v2/secondary/journalcover_images/2011_Structure.gif"> </a> <a target="_blank" rel="noopener" href="http://dx.doi.org/10.1002/bmb.20494"> <img src="v2/secondary/journalcover_images/2011_BiochemMol.gif"> </a> <a target="_blank" rel="noopener" href="http://dx.doi.org/10.1002/wcms.57"> <img src="v2/secondary/journalcover_images/2011_Wires.gif"> </a> <a target="_blank" rel="noopener" href="http://dx.doi.org/10.1038/pid.2011.1"> <img src="v2/secondary/journalcover_images/2011_NCI.png"> </a> <a target="_blank" rel="noopener" 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Kluwer Academic Publishers, Dordrecht. </li> </ul> <ul class="col-sm-6 col-xs-12"> <li> The PDB data uniformity project (2001) Nucleic Acids Research, 29: 214-218. doi: <a target="_blank" rel="noopener" href="http://dx.doi.org/10.1093/nar/29.1.214">10.1093/nar/29.1.214</a> </li> </ul> </div><h2>2000</h2> <div class="row publications"> <ul class="col-sm-6 col-xs-12"> <li> The Protein Data Bank (2000) Nucleic Acids Research 28: 235-242. doi: <a target="_blank" rel="noopener" href="http://dx.doi.org/10.1093/nar/28.1.235">10.1093/nar/28.1.235</a> </li> </ul> <ul class="col-sm-6 col-xs-12"> <li> The Protein Data Bank and the challenge of structural genomics (2000) Nature Structural Biology, 7 (11), pp. 957-959. doi: <a target="_blank" rel="noopener" href="http://dx.doi.org/10.1038/80734">10.1038/80734</a> </li> </ul> </div> </div></div><div data-elastic-exclude><div class="hidden-print" id="footer_main"><div class="container" style="padding:0"><div class="row"><div class="col-md-6 col-sm-12" style="padding-left:0"> <div class="row"><div class="col-sm-4"><ul><li>About</li><li><a href="/pages/about-us/index">About Us</a></li><li><a href="/pages/policies#References">Citing Us</a></li><li><a href="/pages/publications">Publications</a></li><li><a href="/pages/team">Team</a></li><li><a href="/pages/jobs">Careers</a></li><li><a href="/pages/policies">Usage & Privacy</a></li></ul></div><div class="col-sm-4" style="padding-left:0"><ul><li>Support</li><li><a href="/pages/contactus">Contact Us</a></li><li><a href="/help">Help</a></li><li><a href="/docs/general-help/website-faq">Website FAQ</a></li><li><a href="/docs/general-help/glossary">Glossary</a></li><li><a href="https://status.rcsb.org/" target="_blank">Service Status</a></li></ul></div><div class="col-md-4 hidden-sm"></div></div></div><div class="col-md-6 col-sm-12" style="padding-left:5px"> <div class="row"><div class="col-sm-4">RCSB PDB is hosted by<div class="footerLogos"><hr><a href="https://radcollaboratory.rutgers.edu/"><img class="Rutgerslogo" src="https://cdn.rcsb.org/rcsb-pdb//v2/common/images/rad-sm.png" alt="The Rutgers Artificial Intelligence and Data Science Collaboratory logo"></a><hr><a href="https://ucsd.edu/"><img class="UCSDlogo" src="https://cdn.rcsb.org/rcsb-pdb//v2/common/images/Logo_UCSD-navy.png" alt="Uiversity of California San Diego logo"></a><a href="https://www.sdsc.edu/"><img class="SDSClogo" src="https://cdn.rcsb.org/rcsb-pdb//v2/common/images/Logo_SDSC-black.png" alt="San Diego Supercomputer Center logo"></a><hr><a href="https://www.ucsf.edu/"><img class="UCSFlogo" src="https://cdn.rcsb.org/rcsb-pdb//v2/common/images/Logo_UCSF.png" alt="University of California San Francisco Logo"></a></div></div><div class="col-sm-4">RCSB PDB is a member of the<div class="footerLogos"><hr><a href="https://www.wwpdb.org" target="_blank" rel="noopener"><img class="wwpdblogo" src="https://cdn.rcsb.org/rcsb-pdb//v2/common/images/Logo_wwpdb.png" alt="wwPDB"></a><hr><a href="https://www.emdataresource.org" target="_blank" rel="noopener"><img id="emdatabanklogo_footer" src="https://cdn.rcsb.org/rcsb-pdb//v2/common/images/EMDataResourcelogo.png" alt="EMDataResource"></a></div></div><div class="col-sm-4"><ul><li>RCSB Partners</li><li><a href="https://nakb.org/" target="_blank" rel="noopener">Nucleic Acid Knowledgebase</a></li></ul><ul><li><a href="https://www.wwpdb.org/" target="_blank" rel="noopener" style="text-decoration: none; color: black">wwPDB Partners</a></li><li><a href="/">RCSB PDB</a></li><li><a href="https://www.ebi.ac.uk/pdbe/" target="_blank" rel="noopener">PDBe</a></li><li><a href="https://www.pdbj.org/" target="_blank" rel="noopener">PDBj</a></li><li><a href="https://bmrb.io/" target="_blank" rel="noopener">BMRB</a></li><li><a href="https://emdb-empiar.org/" target="_blank" rel="noopener">EMDB</a></li></ul></div></div></div></div></div></div><div id="footer_grant"><div class="container"><div class="row">RCSB PDB Core Operations are funded by the <a href="http://www.nsf.gov/" target="_blank" rel="noopener">U.S. National Science Foundation</a> (DBI-2321666), the <a href="http://science.energy.gov/" target="_blank" rel="noopener">US Department of Energy</a> (DE-SC0019749), and the <a href="http://www.cancer.gov/" target="_blank" rel="noopener">National Cancer Institute</a>, <a href="http://www.niaid.nih.gov/" target="_blank" rel="noopener">National Institute of Allergy and Infectious Diseases</a>, and <a href="http://www.nigms.nih.gov/" target="_blank" rel="noopener">National Institute of General Medical Sciences</a> of the <a href="http://www.nih.gov/" target="_blank" rel="noopener">National Institutes of Health</a> under grant R01GM157729.</div></div></div><div id="jira-fdbck"></div></div></div></body></html>

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