CINXE.COM

Bioconductor - Help

<!DOCTYPE html> <html xmlns="http://www.w3.org/1999/xhtml" dir="ltr" lang="en-US" prefix="og: http://ogp.me/ns#"> <!-- htmllint preset="none" --> <head> <meta name="viewport" content="width=device-width, initial-scale=1.0"> <meta http-equiv="Content-Type" content="text/html; charset=utf-8" /> <meta http-equiv="Content-Language" content="en-us" /> <meta name="robots" content="all" /> <meta name="viewport" content="width=device-width, initial-scale=1" /> <meta name="description" content="The Bioconductor project aims to develop and share open source software for precise and repeatable analysis of biological data. We foster an inclusive and collaborative community of developers and data scientists." /> <title>Bioconductor - Help</title> <link rel="stylesheet" href="//cdnjs.cloudflare.com/ajax/libs/highlight.js/11.7.0/styles/default.min.css"> <link rel="stylesheet" href="/style/existing.css" /> <!-- General styling --> <link rel="stylesheet" type="text/css" href="/style/base/fonts.css" media="screen" /> <link rel="stylesheet" type="text/css" href="/style/base/colors.css" media="screen" /> <link rel="stylesheet" type="text/css" href="/style/base/typography.css" media="screen" /> <link rel="stylesheet" type="text/css" href="/style/base/layout.css" media="screen" /> <!-- Component styling --> <link rel="stylesheet" type="text/css" href="/style/components/code.css" media="screen" /> <link rel="stylesheet" type="text/css" href="/style/components/gallery.css" media="screen" /> <link rel="stylesheet" type="text/css" href="/style/components/blockquote.css" media="screen" /> <link rel="stylesheet" type="text/css" href="/style/components/lists.css" media="screen" /> <link rel="stylesheet" type="text/css" href="/style/components/breadcrumbs.css" media="screen" /> <link rel="stylesheet" type="text/css" href="/style/components/buttons.css" media="screen" /> <link rel="stylesheet" type="text/css" href="/style/components/tables.css" media="screen" /> <!-- Block styling --> <link rel="stylesheet" type="text/css" href="/style/sections/announcement.css" media="screen" /> <link rel="stylesheet" type="text/css" href="/style/sections/hero.css" media="screen" /> <link rel="stylesheet" type="text/css" href="/style/sections/header.css" media="screen" /> <link rel="stylesheet" type="text/css" href="/style/sections/sidebar.css" media="screen" /> <link rel="stylesheet" type="text/css" href="/style/sections/footer.css" media="screen"/> <!-- Page styling --> <link rel="stylesheet" type="text/css" href="/style/pages/home.css" media="screen" /> <link rel="stylesheet" type="text/css" href="/style/pages/get-started.css" media="screen" /> <link rel="stylesheet" type="text/css" href="/style/pages/learn-and-dev.css" media="screen" /> <link rel="stylesheet" type="text/css" href="/style/pages/about.css" media="screen" /> <link rel="stylesheet" type="text/css" href="/style/pages/packages.css" media="screen"/> <link rel="SHORTCUT ICON" type="image/x-icon" href="/favicon.ico" /> <link rel="ICON" type="image/x-icon" href="/favicon.ico" /> </head> <body> <!-- Google tag (gtag.js) --> <script async src="https://www.googletagmanager.com/gtag/js?id=G-WJMEEH1J58"></script> <script> window.dataLayer = window.dataLayer || []; function gtag() { dataLayer.push(arguments); } gtag("js", new Date()); gtag("config", "G-WJMEEH1J58"); </script> <script type="text/javascript" src="/js/jquery.js"></script> <script src="/js/jquery.tools.min.js"></script> <script type="text/javascript" src="/js/bioconductor.js"></script> <script type="text/javascript" src="/js/jquery.corner.js"></script> <script type="text/javascript" src="/js/jquery.timeago.js"></script> <script type="text/javascript" src="/js/bioc-style.js"></script> <script type="text/javascript" src="/js/versions.js"></script> <script type="text/javascript" src="/js/code_blocks.js"></script> <script type="text/javascript" src="/js/sidebar.js"></script> <script src="//cdnjs.cloudflare.com/ajax/libs/highlight.js/11.7.0/highlight.min.js"></script> <header id="site-masthead" class="site-masthead"> <div class="announcement announcement-brand"> </div> <!-- If there are no announcements, comment out the element --> <div class="header-size"> <div class="header-logo"> <a href="/"> <img src="/images/logo/svg/Logo.svg" class="masthead-logo" alt="Bioconductor home" /> </a> </div> <nav class="header-nav"> <div class="nav-links"> <a class="format-bold mobile-link" href="/about/">About</a> <a class="format-bold mobile-link" href="/help/">Learn</a> <a class="format-bold mobile-link" href="/packages/release/BiocViews.html#___Software">Packages</a> <a class="format-bold mobile-link" href="/developers/">Developers</a> </div> <div class="search-container"> <form class="site-search" id="search-form" method="GET" action="/help/search/index.html" > <label for="search-bar" class="sr-only">Search</label> <img src="/images/icons/search-icon.svg" class="search-icon" alt="Search icon" aria-hidden="true" /> <input class="search-bar" name="search-bar" placeholder="Search" id="search-bar" /> </form> </div> <a class="header-button format-bold mobile-link" href="/install/"> <span class="get-started format-bold"> Get Started <svg xmlns="http://www.w3.org/2000/svg" width="14" height="15" viewBox="0 0 14 15" fill="none" > <path d="M5.25 3.66665L9.33333 7.74998L5.25 11.8333" stroke="#3792AD" stroke-width="2.2" stroke-linecap="round" stroke-linejoin="round" /> </svg> </span> </a> </nav> <div class="nav-mobile"> <h6>Menu</h6> <div class="hamburger"> <span class="bar"></span> <span class="bar"></span> <span class="bar"></span> </div> </div> </div> </header> <main> <div class="container"> <section class="content"> <ul class="breadcrumbs"> <li><a href="/">Home</a></li> <li>Help</li> </ul> <h1 class="format-bold">Learn</h1> <div class="page-container"> <div class="upper-container"> <section class="page-intro"> <h2> Find out all you need to know about Bioconductor and it鈥檚 packages </h2> <p class="text-large"> Whether you're a new user seeking to get started or an experienced developer, our knowledge base provides you with the necessary tools and insights to navigate Bioconductor packages effortlessly. </p> <div class="info-section-button-padding"> <a class="brand-border-button" href="/install/"> <span class="span-brand format-bold"> Get Started <svg xmlns="http://www.w3.org/2000/svg" width="14" height="15" viewBox="0 0 14 15" fill="none" > <path d="M5.25 3.66665L9.33333 7.74998L5.25 11.8333" stroke="#3792AD" stroke-width="2.2" stroke-linecap="round" stroke-linejoin="round" /> </svg> </span> </a> </div> <div class="info-section-button-padding"> <a class="brand-border-button" href="/about/"> <span class="span-brand format-bold"> Bioconductor Project Details <svg xmlns="http://www.w3.org/2000/svg" width="14" height="15" viewBox="0 0 14 15" fill="none" > <path d="M5.25 3.66665L9.33333 7.74998L5.25 11.8333" stroke="#3792AD" stroke-width="2.2" stroke-linecap="round" stroke-linejoin="round" /> </svg> </span> </a> </div> </section> <div class="upper-content"> <section> <h4>Learn</h4> <ul> <li> <a class="text-large" href="https://training.bioconductor.org/"> Education and Training </a> </li> <li> <a class="text-large" href="/help/bioconductor-books/"> Bioconductor Books </a> </li> <li> <a class="text-large" href="/help/events/" >Upcoming and Past Events</a> </li> <li> <a class="text-large" href="/help/course-materials/" >Courses and Conference Materials</a> </li> <li> <a class="text-large" href="https://www.youtube.com/user/bioconductor" >Videos</a> </li> <li> <a class="text-large" href="/help/package-vignettes/" >Package Vignettes</a> </li> <li> <a class="text-large" href="/packages/release/BiocViews.html#___Workflow"> Common Workflows </a> </li> <li> <a class="text-large" href="/help/faq/" >FAQ</a> </li> <li> <a class="text-large" href="/help/community/"> Community resources </a> </li> <li> <a class="text-large" href="https://support.bioconductor.org/t/Tutorials/" >Tutorials </a> </li> <li> <a class="text-large" href="/help/support/" >Get Help</a> </li> </ul> </section> </div> </div> <hr class="page-divider" /> <div class="lower-container"> <div class="lower-content"> <section> <h4>Packages</h4> <p class="text-large" class="text-large"> Bioconductor's stable, semi-annual release: </p> <ul> <li> <a class="text-large" href="/news/bioc_3_20_release"> Latest release announcement </a> </li> <li> <a class="text-large" class="symlink" href="/packages/release/BiocViews.html#___Software" >Analysis software packages. </a> </li> <li> <a class="text-large" class="symlink" href="/packages/release/BiocViews.html#___AnnotationData" >Annotation packages. </a> </li> <li> <a class="text-large" class="symlink" href="/packages/release/BiocViews.html#___ExperimentData" >Experiment data packages </a> </li> <li> <a class="text-large" class="symlink" href="/packages/release/BiocViews.html#___Workflow" >Workflow packages. </a> </li> <li> <a class="text-large" class="symlink" href="/help/bioconductor-books/" >Online books </a> </li> <li> <a class="text-large" href="/help/docker/">Docker Containers</a> </li> <li> <a class="text-large" href="https://anvil.bioconductor.org/" >AnVIL</a > </li> </ul> </section> <section> <h4>Developers</h4> <p class="text-large" class="text-large"> See <a href="/developers/">Developers Section</a> for more information </p> <ul> <li> <a class="text-large format-underline" href="/checkResults/">Build Reports </a> <li> <a class="text-large format-underline" href="https://contributions.bioconductor.org">Guidelines for Package Development, Submission, and Peer Review </a> </li> <li> <a class="text-large format-underline" href="https://contributions.bioconductor.org/use-devel.html">Use Bioconductor 'Devel' Version </a> </li> <li> <a class="text-large format-underline" href="https://contributions.bioconductor.org/git-version-control.html">Git Source Control </a> </li> <li> <a class="text-large format-underline" href="https://contributions.bioconductor.org/git-version-control.html#faq">Git FAQ </a> </li> <li> <a class="text-large format-underline" href="/developers/release-schedule/">Release Schedule </a> </li> <li> <a class="text-large format-underline" href="https://code.bioconductor.org/">Browsable Code Base </a> </li> </ul> </section> <section> <h4>Connect With the Community</h4> <p class="text-large" class="text-large"> Interact with the Bioconductor Community </p> <ul> <li> <a class="text-large format-underline" href="/help/support/" >Support Forums</a > </li> <li> <a class="text-large format-underline" href="https://bioconductor.github.io/biocblog" >Community Blog</a > </li> <li> <a class="text-large format-underline" href="https://www.youtube.com/user/bioconductor" >YouTube Channel</a > </li> <li> <a class="text-large format-underline" href="https://slack.bioconductor.org/" >Community Slack</a > </li> <li> <a class="text-large format-underline" href="https://www.linkedin.com/company/bioconductor/" >LinkedIn</a > </li> <li> <a class="text-large format-underline" href="https://bsky.app/profile/bioconductor.bsky.social" >Bluesky</a > </li> <li> <a class="text-large format-underline" href="https://genomic.social/@bioconductor" >Mastodon</a > </li> <li> <a class="text-large format-underline" href="http://f1000research.com/channels/bioconductor" >F1000 Research Channel</a > </li> <li> <a class="text-large format-underline" href="/help/publications" >Publications</a > </li> <li> <a class="text-large format-underline" href="/help/events/" >Bioconductor Related Events</a > </li> </ul> </section> </div> </div> <a onClick="javascript: pageTracker._trackPageview('//support.bioconductor.org'); " class="bottom-chip text-large format-bold" href="//support.bioconductor.org"> <img class="bottom-chip-logo" src="/images/icons/svgs/question-mark-circle.svg" alt="?"/> <p class="text-large">For questions / concerns, please contact us: <mark class="text-large format-underline">support.bioconductor.org</mark></p> </a> </div> </section> </div> </main> <footer> <div class="footer-container"> <div class="link-container"> <div class="link-container-inner"> <nav> <a href="/about/index.html"><h3>About</h3></a> <a href="/about/annual-reports/">Annual Reports</a> <a href="/about/collaborations/">Collaborations</a> <a href="/about/core-team/">Core Team</a> <a href="/about/mirrors/">Mirrors</a> <a href="/dashboard/">Dashboard</a> <a href="/about/">Project Details</a> <a href="/about/code-of-conduct/">Code of Conduct</a> </nav> <nav> <a href="/developers/index.html"><h3>Developers</h3></a> <a href="https://contributions.bioconductor.org/develop-overview.html">Package Guidelines</a> <a href="https://contributions.bioconductor.org/submission-overview.html">Package Submission</a> <a href="/developers/release-schedule/">Release Schedule</a> <a href="/about/release-announcements/">Release Announcements</a> <a href="https://contributions.bioconductor.org/git-version-control.html">Source Control</a> <a href="https://code.bioconductor.org/">Browsable Code Base</a> <a href="/checkResults/">Build Reports</a> </nav> </div> <div class="link-container-inner"> <nav> <a href="/help/index.html"><h3>Learn</h3></a> <a href="https://training.bioconductor.org/">Education and Training</a> <a href="/help/bioconductor-books/">Bioconductor Books</a> <a href="/help/package-vignettes/">Package Vignettes</a> <a href="/packages/release/workflows/">Workflows</a> <a href="/help/publications/">Publications</a> <a href="/help/community/">Community Resources</a> <a href="/help/support/">Get Help</a> </nav> <nav> <a href="/install/index.html"><h3>Get started</h3></a> <a href="/install/index.html#install-R">Install R</a> <a href="/install/index.html#find-bioconductor-packages">Find Bioconductor Packages</a> <a href="/install/index.html#install-bioconductor-packages">Install Bioconductor Packages</a> <a href="/install/index.html#update-bioconductor-packages">Update Bioconductor Packages</a> <a href="/help/docker/">Docker Images</a> <a href="https://anvil.bioconductor.org/">Bioconductor in AnVIL</a> <a href="/packages/release/BiocViews.html#___Software">Bioconductor Packages</a> </nav> </div> </div> <div class="logo-contact-container"> <div class="copyright"> <p> Contact us: <a class="text-underline" href="https://support.bioconductor.org/">support.bioconductor.org</a><br/> Copyright &copy; 2003 - 2024 Bioconductor </p> </div> <div class="socials-logo-container"> <div class="socials"> <a href="https://slack.bioconductor.org/" target="_blank"><img alt="Slack Logo" src="/images/icons/slack.png" /></a> <a href="https://www.youtube.com/user/bioconductor" target="_blank"><img alt="YouTube Logo" src="/images/icons/svgs/youtube.svg" /></a> <a href="https://www.linkedin.com/company/bioconductor/" target="_blank"><img alt="LinkedIn Logo" src="/images/icons/svgs/linkedin.svg" /></a> <a href="https://bsky.app/profile/bioconductor.bsky.social" target="_blank"><img alt="Bluesky Logo" src="/images/icons/svgs/bluesky.svg" /></a> <a href="https://genomic.social/@bioconductor" target="_blank"><img alt="Mastodon Logo" src="/images/icons/svgs/mastodon.svg" /></a> <a href="https://blog.bioconductor.org/" target="_blank"><img alt="Blog Logo" src="/images/icons/svgs/arrow-circle-right-white.svg" /></a> </div> <img class="footer-logo" src="/images/logo/svg/BC-Logo-White.svg" alt="BioConductor Logo in White" /> </div> </div> </div> </footer> </body> </html>

Pages: 1 2 3 4 5 6 7 8 9 10