Open Biomedical Imaging Archive

<!DOCTYPE html> <html class="r3d-html "> <head> <title>Open Biomedical Imaging Archive | re3data.org</title> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <link rel="search" type="application/opensearchdescription+xml" href="/api/opensearch/opensearch.xml" title="re3data.org search"> <link rel="stylesheet" href="/build/vendors-node_modules_diff-match-patch_index_js-node_modules_bootstrap_dist_css_bootstrap_min_-f7e038.css"><link rel="stylesheet" href="/build/assets_javascript_re3data_js-assets_styles_screen_scss.css"><link rel="stylesheet" href="/build/frontend.css"> <script src="/build/runtime.js" defer></script><script src="/build/vendors-node_modules_jquery_dist_jquery_js.js" defer></script><script src="/build/vendors-node_modules_core-js_modules_es_array_find_js-node_modules_core-js_modules_es_date_to-006977.js" defer></script><script src="/build/vendors-node_modules_diff-match-patch_index_js-node_modules_bootstrap_dist_css_bootstrap_min_-f7e038.js" defer></script><script 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research data repository."></div> <div class="icon icon-persistent_identifier_inactive hint--top hint--bounce" data-hint="The research data repository does not use a persistent identifier system."></div> <div class="icon icon-certificate_inactive hint--top hint--bounce" data-hint="The research data repository is neither certified nor supports a repository standard."></div> <div class="icon icon-policy_active hint--top hint--bounce" data-hint="The research data repository provides a policy."></div> </div> </div> <div class="row col-md-12"> <div class="nav-tabs-custom">  <ul class="nav nav-tabs"> <li class="active"><a href="#tab_general" data-toggle="tab">General</a></li> <li><a href="#tab_institutions" data-toggle="tab">Institutions</a></li> <li><a href="#tab_terms" data-toggle="tab">Terms</a></li> <li><a href="#tab_standards" data-toggle="tab">Standards</a></li> </ul >  <div class="tab-content"> <div class="tab-pane active" id="tab_general"> <div class="row col-sm-12"> <div class="col-sm-3"> Name of repository </div> <div class="col-sm-9"> <b>Open Biomedical Imaging Archive</b> </div> </div> <div class="row col-sm-12"> <div class="separator"></div> </div> <div class="row col-sm-12"> <div class="col-sm-3"> Additional name(s) </div> <div class="col-sm-9"> <ul> <li> OBIA </li> </ul> </div> </div> <div class="row col-sm-12"> <div class="separator"></div> </div> <div class="row col-sm-12"> <div class="col-sm-3"> Repository URL </div> <div class="col-sm-9"> <a href="https://ngdc.cncb.ac.cn/obia/home">https://ngdc.cncb.ac.cn/obia/home</a> </div> </div> <div class="row col-sm-12"> <div class="separator"></div> </div> <div class="row col-sm-12"> <div class="col-sm-3"> Subject(s) </div> <div class="col-sm-9"> <ul> <li class="no-line-break"> <a class="label subjects" href="/search?subjects[]=2" title="Search with subject 'Life Sciences'"> Life Sciences </a> </li> <li class="no-line-break"> <a class="label subjects" href="/search?subjects[]=22" title="Search with subject 'Medicine'"> Medicine </a> </li> <li class="no-line-break"> <a class="label subjects" href="/search?subjects[]=221" title="Search with subject 'Microbiology, Virology and Immunology'"> Microbiology, Virology and Immunology </a> </li> <li class="no-line-break"> <a class="label subjects" href="/search?subjects[]=222" title="Search with subject 'Medicine'"> Medicine </a> </li> <li class="no-line-break"> <a class="label subjects" href="/search?subjects[]=22232" title="Search with subject 'Medical Physics, Biomedical Technology'"> Medical Physics, Biomedical Technology </a> </li> </ul> </div> </div> <div class="row col-sm-12"> <div class="separator"></div> </div> <div class="row col-sm-12"> <div class="col-sm-3"> Description </div> <div class="col-sm-9"> The Open Biomedical Imaging Archive (OBIA) is a repository for archiving biomedical imaging and related clinical data in a common DICOM format. OBIA adopts five data objects (Collection, Individual, Study, Series, and Image) for data organization, accepts the submission of biomedical images of multiple modalities, organs, and diseases. In order to protect personal privacy, OBIA has formulated a unified de-identification and quality control process based on the DICOM standard. In addition, OBIA provides friendly and intuitive web interface for data submission, browsing and retrieval, as well as image retrieval. As of November 2024, OBIA has housed data for a total of 991 individuals, 4244 studies, 24,701 series, and 1,946,305 images covering 9 modalities and 30 anatomical sites. Representative imaging modalities are MR, CT, and DX. Anatomical sites include the chest, pelvis, abdomen, head and liver. OBIA offering two types of data accessibility: open access and controlled access. Data access permissions for controlled-access datasets are managed by the submitter. Collectively, OBIA provides a reliable platform for biomedical imaging data management and offers free open access to all publicly available data to support research activities throughout the world. </div> </div> <div class="row col-sm-12"> <div class="separator"></div> </div> <div class="row col-sm-12"> <div class="col-sm-3"> Contact(s) </div> <div class="col-sm-9"> <ul> <li> administrative: obia@big.ac.cn </li> </ul> </div> <div class="row col-sm-12"><div class="separator"></div></div> </div> <div class="row col-sm-12"> <div class="col-sm-3"> Content type(s) </div> <div class="col-sm-9"> <ul> <li><a href="http://purl.org/coar/resource_type/c_ddb1">dataset</a></li> <li><a href="http://purl.org/coar/resource_type/c_c513">image</a></li> </ul> </div> <div class="row col-sm-12"><div class="separator"></div></div> </div> <div class="row col-sm-12"> <div class="col-sm-3"> Keyword(s) </div> <div class="col-sm-9"> <ul> <li class="no-line-break"> <a class="label keywords" href="/search?query=De-identification" title="Search with keyword 'De-identification'"> De-identification </a> </li> <li class="no-line-break"> <a class="label keywords" href="/search?query=biomedical imaging" title="Search with keyword 'biomedical imaging'"> biomedical imaging </a> </li> <li class="no-line-break"> <a class="label keywords" href="/search?query=chemotherapy" title="Search with keyword 'chemotherapy'"> chemotherapy </a> </li> <li class="no-line-break"> <a class="label keywords" href="/search?query=disease" title="Search with keyword 'disease'"> disease </a> </li> <li class="no-line-break"> <a class="label keywords" href="/search?query=histology" title="Search with keyword 'histology'"> histology </a> </li> <li class="no-line-break"> <a class="label keywords" href="/search?query=quality control" title="Search with keyword 'quality control'"> quality control </a> </li> <li class="no-line-break"> <a class="label keywords" href="/search?query=radiomics" title="Search with keyword 'radiomics'"> radiomics </a> </li> </ul> </div> </div> <div class="row col-sm-12"> <div class="separator"></div> </div> <div class="row col-sm-12"> <div class="col-sm-3"> Repository size </div> <div class="col-sm-9"> 991 individuals, 4.244 studies, 1.946.305 images </div> </div> <div class="row col-sm-12"> <div class="separator"></div> </div> <div class="row col-sm-12"> <div class="col-sm-3"> Repository type(s) </div> <div class="col-sm-9"> <ul> <li> disciplinary </li> </ul> </div> </div> <div class="row col-sm-12"> <div class="separator"></div> </div> <div class="row col-sm-12"> <div class="col-sm-3"> Mission statement for designated community </div> <div class="col-sm-9"> <a href="https://ngdc.cncb.ac.cn/obia/obia">https://ngdc.cncb.ac.cn/obia/obia</a> </div> </div> <div class="row col-sm-12"> <div class="separator"></div> </div> <div class="row col-sm-12"> <div class="col-sm-3"> Research data repository language(s) </div> <div class="col-sm-9"> <ul> <li class="no-line-break"> English </li> </ul> </div> </div> <div class="row col-sm-12"> <div class="separator"></div> </div> <div class="row col-sm-12"> <div class="col-sm-3"> Data and/or service provider </div> <div class="col-sm-9"> <ul> <li> dataProvider </li> </ul> </div> </div> <div class="row col-sm-12"> <div class="separator"></div> </div> </div> <div class="tab-pane" id="tab_institutions"> <div class="row col-sm-12"> <h2>Institutions (2)</h2> </div> <div class="row col-sm-12"> <div class="row col-sm-12 content-block"> <div class="row col-sm-12"> <div class="col-sm-3"> Institution </div> <div class="col-sm-9"> <a href="https://www.cncb.ac.cn/"><b>China National Center for Bioinformation</b></a> </div> <div class="row col-sm-12"><div class="separator"></div></div> </div> <div class="row col-sm-12"> <div class="col-sm-3"> Additional name(s) </div> <div class="col-sm-9"> <ul> <li> CNCB </li> </ul> </div> </div> <div class="row col-sm-12"> <div class="separator"></div> </div> <div class="row col-sm-12"> <div class="col-sm-3"> Country </div> <div class="col-sm-9"> <a class="label country" href="/search?countries[]=CHN" title="Search with country 'China'"> China </a> </div> </div> <div class="row col-sm-12"> <div class="separator"></div> </div> <div class="row col-sm-12"> <div class="col-sm-3"> Type(s) of responsibility </div> <div class="col-sm-9"> <ul> <li> general </li> </ul> </div> </div> <div class="row col-sm-12"> <div class="separator"></div> </div> <div class="row col-sm-12"> <div class="col-sm-3"> Type of institution </div> <div class="col-sm-9"> non-profit </div> </div> <div class="row col-sm-12"> <div class="separator"></div> </div> </div> <div class="row col-sm-12 content-block"> <div class="row col-sm-12"> <div class="col-sm-3"> Institution </div> <div class="col-sm-9"> <a href="https://ngdc.cncb.ac.cn/funding"><b>National Genomics Data Center</b></a> </div> <div class="row col-sm-12"><div class="separator"></div></div> </div> <div class="row col-sm-12"> <div class="col-sm-3"> Additional name(s) </div> <div class="col-sm-9"> <ul> <li> NGDC </li> </ul> </div> </div> <div class="row col-sm-12"> <div class="separator"></div> </div> <div class="row col-sm-12"> <div class="col-sm-3"> Institution </div> <div class="col-sm-9"> <ul> <li> <a href="https://scicrunch.org/resolver/RRID:SCR_025825">RRID:SCR_025825</a> </li> </ul> </div> <div class="row col-sm-12"><div class="separator"></div></div> </div> <div class="row col-sm-12"> <div class="col-sm-3"> Country </div> <div class="col-sm-9"> <a class="label country" href="/search?countries[]=CHN" title="Search with country 'China'"> China </a> </div> </div> <div class="row col-sm-12"> <div class="separator"></div> </div> <div class="row col-sm-12"> <div class="col-sm-3"> Type(s) of responsibility </div> <div class="col-sm-9"> <ul> <li> funding </li> </ul> </div> </div> <div class="row col-sm-12"> <div class="separator"></div> </div> <div class="row col-sm-12"> <div class="col-sm-3"> Type of institution </div> <div class="col-sm-9"> non-profit </div> </div> <div class="row col-sm-12"> <div class="separator"></div> </div> </div> </div> </div> <div class="tab-pane" id="tab_terms"> <div class="row col-sm-12"> <h2>Policies (1)</h2> </div> <div class="row col-sm-12"> <div class="row col-sm-12 content-block"> <div class="row col-sm-12"> <div class="col-sm-3"> Policy Name </div> <div class="col-sm-9"> <a href="https://ngdc.cncb.ac.cn/policies">Data Usage Policies and Disclaimers</a> </div> </div> <div class="row col-sm-12"> <div class="separator"></div> </div> </div> </div> <div class="row col-sm-12"> <h2>Database access</h2> </div> <div class="row col-sm-12"> <div class="row col-sm-12 content-block"> <div class="row col-sm-12"> <div class="col-sm-3"> Type of access to research data repository </div> <div class="col-sm-9"> open </div> </div> <div class="row col-sm-12"> <div class="separator"></div> </div> </div> </div> <div class="row col-sm-12"> <h2>Database licenses (1)</h2> </div> <div class="row col-sm-12"> <div class="row col-sm-12 content-block"> <div class="row col-sm-12"> <div class="col-sm-3"> Database License </div> <div class="col-sm-9"> <a href="https://creativecommons.org/licenses/by/3.0/cn/">CC</a> </div> </div> <div class="row col-sm-12"> <div class="separator"></div> </div> </div> </div> <div class="row col-sm-12"> <h2>Data access (1)</h2> </div> <div class="row col-sm-12"> <div class="row col-sm-12 content-block"> <div class="row col-sm-12"> <div class="col-sm-3"> Type of access to data </div> <div class="col-sm-9"> open </div> </div> <div class="row col-sm-12"> <div class="separator"></div> </div> </div> </div> <div class="row col-sm-12"> <h2>Data licenses (1)</h2> </div> <div class="row col-sm-12"> <div class="row col-sm-12 content-block"> <div class="row col-sm-12"> <div class="col-sm-3"> DataLicense </div> <div class="col-sm-9"> <a href="https://creativecommons.org/licenses/by/4.0/">CC</a> </div> </div> <div class="row col-sm-12"> <div class="separator"></div> </div> </div> </div> <div class="row col-sm-12"> <h2>Data upload (1)</h2> </div> <div class="row col-sm-12"> <div class="row col-sm-12 content-block"> <div class="row col-sm-12"> <div class="col-sm-3"> Type of data upload </div> <div class="col-sm-9"> restricted </div> </div> <div class="row col-sm-12"> <div class="separator"></div> </div> <div class="row col-sm-12"> <div class="col-sm-3"> Data upload restriction type(s) </div> <div class="col-sm-9"> <ul> <li> registration </li> </ul> </div> </div> <div class="row col-sm-12"> <div class="separator"></div> </div> </div> </div> <div class="row col-sm-12"> <h2>Data upload license (1)</h2> </div> <div class="row col-sm-12"> <div class="row col-sm-12 content-block"> <div class="row col-sm-12"> <div class="col-sm-3"> Data upload license name </div> <div class="col-sm-9"> <a href="https://ngdc.cncb.ac.cn/obia/submit">OBIA Data Submission</a> </div> </div> <div class="row col-sm-12"> <div class="separator"></div> </div> </div> </div> </div> <div class="tab-pane" id="tab_standards"> <div class="row col-sm-12 content-block"> <div class="row col-sm-12"> <div class="col-sm-3"> Data citation guideline </div> <div class="col-sm-9"> <a href="https://ngdc.cncb.ac.cn/obia/home">https://ngdc.cncb.ac.cn/obia/home</a> </div> </div> <div class="row col-sm-12"> <div class="separator"></div> </div> <div class="row col-sm-12"> <div class="col-sm-3"> Enhanced Publication </div> <div class="col-sm-9"> yes </div> </div> <div class="row col-sm-12"> <div class="separator"></div> </div> <div class="row col-sm-12"> <div class="col-sm-3"> Quality management </div> <div class="col-sm-9"> yes </div> </div> <div class="row col-sm-12"> <div class="separator"></div> </div> </div> <div class="row col-sm-12"> <h2>Remarks</h2> </div> <div class="row col-sm-12"> <div class="row col-sm-12 content-block"> <div class="row col-sm-12"> <div class="col-sm-3"> Entry date </div> <div class="col-sm-9"> 2024-11-14 </div> </div> <div class="row col-sm-12"> <div class="separator"></div> </div> <div class="row col-sm-12"> <div class="col-sm-3"> Last update </div> <div class="col-sm-9"> 2024-11-15 </div> </div> <div class="row col-sm-12"> <div class="separator"></div> </div> </div> </div> </div> </div> </div> </div> <div class="row col-md-12"> <div class="col-md-4"> <a style="padding: 20px 0px;" href="/search" class="btn btn-small"> <i class="icon icon-chevron-left"></i>Back to search </a> </div> <div class="col-md-4 text-center"> <a style="padding: 20px 0px;" href="/repository/change/r3d100014507" class="btn btn-small"> Submit a change request </a> </div> <div class="col-md-4 text-right"> <a style="padding: 20px 0px;" href="/resources/badge/100014507" class="btn btn-small"> Get a badge </a> </div> </div> </div>  <section id="r3d-footer" class="container-fluid"> <div class="col-md-2 pull-left"> <ul style="list-style-type: none;"> <li> <a href="/legalnotice">Legal notice / Impressum</a> 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