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GitHub - dasmiq/passim: Detect and align similar passages
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<nav class="HeaderMenu-nav" aria-label="Global"> <ul class="d-lg-flex list-style-none"> <li class="HeaderMenu-item position-relative flex-wrap flex-justify-between flex-items-center d-block d-lg-flex flex-lg-nowrap flex-lg-items-center js-details-container js-header-menu-item"> <button type="button" class="HeaderMenu-link border-0 width-full width-lg-auto px-0 px-lg-2 py-lg-2 no-wrap d-flex flex-items-center flex-justify-between js-details-target" aria-expanded="false"> Product <svg opacity="0.5" aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-chevron-down HeaderMenu-icon ml-1"> <path d="M12.78 5.22a.749.749 0 0 1 0 1.06l-4.25 4.25a.749.749 0 0 1-1.06 0L3.22 6.28a.749.749 0 1 1 1.06-1.06L8 8.939l3.72-3.719a.749.749 0 0 1 1.06 0Z"></path> </svg> </button> <div class="HeaderMenu-dropdown dropdown-menu rounded m-0 p-0 pt-2 pt-lg-4 position-relative position-lg-absolute left-0 left-lg-n3 pb-2 pb-lg-4 d-lg-flex 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1.132-3.368.397-.406.89-.717 1.474-.952 1.399-1.136 3.392-2.093 6.122-2.093 2.731 0 4.767.957 6.166 2.093.584.235 1.077.546 1.474.952.85.869 1.132 2.037 1.132 3.368 0 .368-.014.733-.052 1.086.23.462.477 1.088.644 1.517 1.258.364 2.233 1.721 2.605 2.656a.832.832 0 0 1 .053.22v2.869a.641.641 0 0 1-.078.256ZM12.172 11h-.344a4.323 4.323 0 0 1-.355.508C10.703 12.455 9.555 13 7.965 13c-1.725 0-2.989-.359-3.782-1.259a2.005 2.005 0 0 1-.085-.104L4 11.741v6.585c1.435.779 4.514 2.179 8 2.179 3.486 0 6.565-1.4 8-2.179v-6.585l-.098-.104s-.033.045-.085.104c-.793.9-2.057 1.259-3.782 1.259-1.59 0-2.738-.545-3.508-1.492a4.323 4.323 0 0 1-.355-.508h-.016.016Zm.641-2.935c.136 1.057.403 1.913.878 2.497.442.544 1.134.938 2.344.938 1.573 0 2.292-.337 2.657-.751.384-.435.558-1.15.558-2.361 0-1.14-.243-1.847-.705-2.319-.477-.488-1.319-.862-2.824-1.025-1.487-.161-2.192.138-2.533.529-.269.307-.437.808-.438 1.578v.021c0 .265.021.562.063.893Zm-1.626 0c.042-.331.063-.628.063-.894v-.02c-.001-.77-.169-1.271-.438-1.578-.341-.391-1.046-.69-2.533-.529-1.505.163-2.347.537-2.824 1.025-.462.472-.705 1.179-.705 2.319 0 1.211.175 1.926.558 2.361.365.414 1.084.751 2.657.751 1.21 0 1.902-.394 2.344-.938.475-.584.742-1.44.878-2.497Z"></path><path d="M14.5 14.25a1 1 0 0 1 1 1v2a1 1 0 0 1-2 0v-2a1 1 0 0 1 1-1Zm-5 0a1 1 0 0 1 1 1v2a1 1 0 0 1-2 0v-2a1 1 0 0 1 1-1Z"></path> </svg> <div> <div class="color-fg-default h4">GitHub Copilot</div> Write better code with AI </div> </a></li> <li> <a class="HeaderMenu-dropdown-link d-block no-underline position-relative py-2 Link--secondary d-flex flex-items-center Link--has-description pb-lg-3" data-analytics-event="{"location":"navbar","action":"security","context":"product","tag":"link","label":"security_link_product_navbar"}" href="https://github.com/features/security"> <svg aria-hidden="true" height="24" viewBox="0 0 24 24" version="1.1" width="24" data-view-component="true" class="octicon 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data-analytics-event="{"location":"navbar","action":"codespaces","context":"product","tag":"link","label":"codespaces_link_product_navbar"}" href="https://github.com/features/codespaces"> <svg aria-hidden="true" height="24" viewBox="0 0 24 24" version="1.1" width="24" data-view-component="true" class="octicon octicon-codespaces color-fg-subtle mr-3"> <path d="M3.5 3.75C3.5 2.784 4.284 2 5.25 2h13.5c.966 0 1.75.784 1.75 1.75v7.5A1.75 1.75 0 0 1 18.75 13H5.25a1.75 1.75 0 0 1-1.75-1.75Zm-2 12c0-.966.784-1.75 1.75-1.75h17.5c.966 0 1.75.784 1.75 1.75v4a1.75 1.75 0 0 1-1.75 1.75H3.25a1.75 1.75 0 0 1-1.75-1.75ZM5.25 3.5a.25.25 0 0 0-.25.25v7.5c0 .138.112.25.25.25h13.5a.25.25 0 0 0 .25-.25v-7.5a.25.25 0 0 0-.25-.25Zm-2 12a.25.25 0 0 0-.25.25v4c0 .138.112.25.25.25h17.5a.25.25 0 0 0 .25-.25v-4a.25.25 0 0 0-.25-.25Z"></path><path d="M10 17.75a.75.75 0 0 1 .75-.75h6.5a.75.75 0 0 1 0 1.5h-6.5a.75.75 0 0 1-.75-.75Zm-4 0a.75.75 0 0 1 .75-.75h.5a.75.75 0 0 1 0 1.5h-.5a.75.75 0 0 1-.75-.75Z"></path> 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0 0 1 2 12.25v-8.5C2 2.784 2.784 2 3.75 2Zm6.854-1h4.146a.25.25 0 0 1 .25.25v4.146a.25.25 0 0 1-.427.177L13.03 4.03 9.28 7.78a.751.751 0 0 1-1.042-.018.751.751 0 0 1-.018-1.042l3.75-3.75-1.543-1.543A.25.25 0 0 1 10.604 1Z"></path> </svg> </a></li> <li> <a class="HeaderMenu-dropdown-link d-block no-underline position-relative py-2 Link--secondary Link--external" target="_blank" data-analytics-event="{"location":"navbar","action":"github_skills","context":"product","tag":"link","label":"github_skills_link_product_navbar"}" href="https://skills.github.com"> GitHub Skills <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-link-external HeaderMenu-external-icon color-fg-subtle"> <path d="M3.75 2h3.5a.75.75 0 0 1 0 1.5h-3.5a.25.25 0 0 0-.25.25v8.5c0 .138.112.25.25.25h8.5a.25.25 0 0 0 .25-.25v-3.5a.75.75 0 0 1 1.5 0v3.5A1.75 1.75 0 0 1 12.25 14h-8.5A1.75 1.75 0 0 1 2 12.25v-8.5C2 2.784 2.784 2 3.75 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data-view-component="true" class="octicon octicon-link-external HeaderMenu-external-icon color-fg-subtle"> <path d="M3.75 2h3.5a.75.75 0 0 1 0 1.5h-3.5a.25.25 0 0 0-.25.25v8.5c0 .138.112.25.25.25h8.5a.25.25 0 0 0 .25-.25v-3.5a.75.75 0 0 1 1.5 0v3.5A1.75 1.75 0 0 1 12.25 14h-8.5A1.75 1.75 0 0 1 2 12.25v-8.5C2 2.784 2.784 2 3.75 2Zm6.854-1h4.146a.25.25 0 0 1 .25.25v4.146a.25.25 0 0 1-.427.177L13.03 4.03 9.28 7.78a.751.751 0 0 1-1.042-.018.751.751 0 0 1-.018-1.042l3.75-3.75-1.543-1.543A.25.25 0 0 1 10.604 1Z"></path> </svg> </a></li> <li> <a class="HeaderMenu-dropdown-link d-block no-underline position-relative py-2 Link--secondary" data-analytics-event="{"location":"navbar","action":"executive_insights","context":"resources","tag":"link","label":"executive_insights_link_resources_navbar"}" href="https://github.com/solutions/executive-insights"> Executive Insights </a></li> </ul> </div> </div> </div> </li> <li class="HeaderMenu-item position-relative flex-wrap flex-justify-between flex-items-center d-block d-lg-flex flex-lg-nowrap flex-lg-items-center js-details-container js-header-menu-item"> <button type="button" class="HeaderMenu-link border-0 width-full width-lg-auto px-0 px-lg-2 py-lg-2 no-wrap d-flex flex-items-center flex-justify-between js-details-target" aria-expanded="false"> Open Source <svg opacity="0.5" aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-chevron-down HeaderMenu-icon ml-1"> <path d="M12.78 5.22a.749.749 0 0 1 0 1.06l-4.25 4.25a.749.749 0 0 1-1.06 0L3.22 6.28a.749.749 0 1 1 1.06-1.06L8 8.939l3.72-3.719a.749.749 0 0 1 1.06 0Z"></path> </svg> </button> <div class="HeaderMenu-dropdown dropdown-menu rounded m-0 p-0 pt-2 pt-lg-4 position-relative position-lg-absolute left-0 left-lg-n3 pb-2 pb-lg-4 px-lg-4"> <div class="HeaderMenu-column"> <div class="border-bottom pb-3 pb-lg-0 pb-lg-3 mb-3 mb-lg-0 mb-lg-3"> <ul class="list-style-none f5" > <li> <a 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id="custom_scope_id" name="custom_scope_id" data-target="custom-scopes.customScopesIdField"> <div class="form-group"> <label for="custom_scope_name">Name</label> <auto-check src="/search/custom_scopes/check_name" required only-validate-on-blur="false"> <input type="text" name="custom_scope_name" id="custom_scope_name" data-target="custom-scopes.customScopesNameField" class="form-control" autocomplete="off" placeholder="github-ruby" required maxlength="50"> <input type="hidden" data-csrf="true" value="K35IeP2mv0DCWQ8WZbsLChc6g4VIH32ODfvXuL9W2bIw4fYmxKghzlBQTc+06RvDVGHZv2OtU+rvt25aAPSHwA==" /> </auto-check> </div> <div class="form-group"> <label for="custom_scope_query">Query</label> <input type="text" name="custom_scope_query" id="custom_scope_query" data-target="custom-scopes.customScopesQueryField" class="form-control" autocomplete="off" placeholder="(repo:mona/a OR repo:mona/b) AND lang:python" required maxlength="500"> </div> <p class="text-small color-fg-muted"> To see all available qualifiers, see our <a class="Link--inTextBlock" href="https://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax">documentation</a>. </p> </form> </div> <div data-target="custom-scopes.manageCustomScopesForm"> <div data-target="custom-scopes.list"></div> </div> </div> </scrollable-region> <div data-view-component="true" class="Overlay-footer Overlay-footer--alignEnd Overlay-footer--divided"> <button data-action="click:custom-scopes#customScopesCancel" type="button" data-view-component="true" class="btn"> Cancel </button> <button form="custom-scopes-dialog-form" data-action="click:custom-scopes#customScopesSubmit" data-target="custom-scopes.customScopesSubmitButton" type="submit" data-view-component="true" class="btn-primary btn"> Create saved search </button> </div> </dialog></dialog-helper> </custom-scopes> </div> </qbsearch-input> <div class="position-relative HeaderMenu-link-wrap d-lg-inline-block"> <a href="/login?return_to=https%3A%2F%2Fgithub.com%2Fdasmiq%2Fpassim" class="HeaderMenu-link HeaderMenu-link--sign-in HeaderMenu-button flex-shrink-0 no-underline d-none d-lg-inline-flex border border-lg-0 rounded rounded-lg-0 px-2 py-1" style="margin-left: 12px;" data-hydro-click="{"event_type":"authentication.click","payload":{"location_in_page":"site header menu","repository_id":null,"auth_type":"SIGN_UP","originating_url":"https://github.com/dasmiq/passim","user_id":null}}" data-hydro-click-hmac="554bafec3651298b19e149a35159483acc613e21746c55e57a6b6248d492bd6a" data-analytics-event="{"category":"Marketing nav","action":"click to go to homepage","label":"ref_page:Marketing;ref_cta:Sign in;ref_loc:Header"}" > Sign in </a> </div> <a href="/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=dasmiq%2Fpassim" class="HeaderMenu-link HeaderMenu-link--sign-up HeaderMenu-button flex-shrink-0 d-flex d-lg-inline-flex no-underline border color-border-default rounded px-2 py-1" data-hydro-click="{"event_type":"authentication.click","payload":{"location_in_page":"site header menu","repository_id":null,"auth_type":"SIGN_UP","originating_url":"https://github.com/dasmiq/passim","user_id":null}}" data-hydro-click-hmac="554bafec3651298b19e149a35159483acc613e21746c55e57a6b6248d492bd6a" data-analytics-event="{"category":"Sign up","action":"click to sign up for account","label":"ref_page:/<user-name>/<repo-name>;ref_cta:Sign up;ref_loc:header logged out"}" > Sign up </a> <button type="button" class="sr-only js-header-menu-focus-trap d-block d-lg-none">Reseting focus</button> </div> </div> </div> </div> </header> <div hidden="hidden" data-view-component="true" class="js-stale-session-flash stale-session-flash flash flash-warn flash-full"> <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-alert"> <path d="M6.457 1.047c.659-1.234 2.427-1.234 3.086 0l6.082 11.378A1.75 1.75 0 0 1 14.082 15H1.918a1.75 1.75 0 0 1-1.543-2.575Zm1.763.707a.25.25 0 0 0-.44 0L1.698 13.132a.25.25 0 0 0 .22.368h12.164a.25.25 0 0 0 .22-.368Zm.53 3.996v2.5a.75.75 0 0 1-1.5 0v-2.5a.75.75 0 0 1 1.5 0ZM9 11a1 1 0 1 1-2 0 1 1 0 0 1 2 0Z"></path> </svg> <span class="js-stale-session-flash-signed-in" hidden>You signed in with another tab or window. <a class="Link--inTextBlock" href="">Reload</a> to refresh your session.</span> <span class="js-stale-session-flash-signed-out" hidden>You signed out in another tab or window. <a class="Link--inTextBlock" href="">Reload</a> to refresh your session.</span> <span class="js-stale-session-flash-switched" hidden>You switched accounts on another tab or window. <a class="Link--inTextBlock" href="">Reload</a> to refresh your session.</span> <button id="icon-button-e60fa0d4-86d7-44ca-91b3-db58197adf0d" aria-labelledby="tooltip-31072e6c-4564-499d-8d7d-ab662bb37cb2" type="button" data-view-component="true" class="Button Button--iconOnly Button--invisible Button--medium flash-close js-flash-close"> <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-x Button-visual"> <path d="M3.72 3.72a.75.75 0 0 1 1.06 0L8 6.94l3.22-3.22a.749.749 0 0 1 1.275.326.749.749 0 0 1-.215.734L9.06 8l3.22 3.22a.749.749 0 0 1-.326 1.275.749.749 0 0 1-.734-.215L8 9.06l-3.22 3.22a.751.751 0 0 1-1.042-.018.751.751 0 0 1-.018-1.042L6.94 8 3.72 4.78a.75.75 0 0 1 0-1.06Z"></path> </svg> </button><tool-tip id="tooltip-31072e6c-4564-499d-8d7d-ab662bb37cb2" for="icon-button-e60fa0d4-86d7-44ca-91b3-db58197adf0d" popover="manual" data-direction="s" data-type="label" data-view-component="true" class="sr-only position-absolute">Dismiss alert</tool-tip> </div> </div> <div id="start-of-content" class="show-on-focus"></div> <div id="js-flash-container" class="flash-container" data-turbo-replace> <template class="js-flash-template"> <div class="flash flash-full {{ className }}"> <div > <button autofocus class="flash-close js-flash-close" type="button" aria-label="Dismiss this message"> <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-x"> <path d="M3.72 3.72a.75.75 0 0 1 1.06 0L8 6.94l3.22-3.22a.749.749 0 0 1 1.275.326.749.749 0 0 1-.215.734L9.06 8l3.22 3.22a.749.749 0 0 1-.326 1.275.749.749 0 0 1-.734-.215L8 9.06l-3.22 3.22a.751.751 0 0 1-1.042-.018.751.751 0 0 1-.018-1.042L6.94 8 3.72 4.78a.75.75 0 0 1 0-1.06Z"></path> </svg> </button> <div aria-atomic="true" role="alert" class="js-flash-alert"> <div>{{ message }}</div> </div> </div> </div> </template> </div> <div class="application-main " data-commit-hovercards-enabled data-discussion-hovercards-enabled data-issue-and-pr-hovercards-enabled data-project-hovercards-enabled > <div itemscope itemtype="http://schema.org/SoftwareSourceCode" class=""> <main id="js-repo-pjax-container" > <div id="repository-container-header" class="pt-3 hide-full-screen" style="background-color: var(--page-header-bgColor, var(--color-page-header-bg));" data-turbo-replace> <div class="d-flex flex-nowrap flex-justify-end mb-3 px-3 px-lg-5" style="gap: 1rem;"> <div class="flex-auto min-width-0 width-fit"> <div class=" d-flex flex-wrap flex-items-center wb-break-word f3 text-normal"> <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-repo color-fg-muted mr-2"> <path d="M2 2.5A2.5 2.5 0 0 1 4.5 0h8.75a.75.75 0 0 1 .75.75v12.5a.75.75 0 0 1-.75.75h-2.5a.75.75 0 0 1 0-1.5h1.75v-2h-8a1 1 0 0 0-.714 1.7.75.75 0 1 1-1.072 1.05A2.495 2.495 0 0 1 2 11.5Zm10.5-1h-8a1 1 0 0 0-1 1v6.708A2.486 2.486 0 0 1 4.5 9h8ZM5 12.25a.25.25 0 0 1 .25-.25h3.5a.25.25 0 0 1 .25.25v3.25a.25.25 0 0 1-.4.2l-1.45-1.087a.249.249 0 0 0-.3 0L5.4 15.7a.25.25 0 0 1-.4-.2Z"></path> </svg> <span class="author flex-self-stretch" itemprop="author"> <a class="url fn" rel="author" data-hovercard-type="user" data-hovercard-url="/users/dasmiq/hovercard" data-octo-click="hovercard-link-click" data-octo-dimensions="link_type:self" href="/dasmiq"> dasmiq </a> </span> <span class="mx-1 flex-self-stretch color-fg-muted">/</span> <strong itemprop="name" class="mr-2 flex-self-stretch"> <a data-pjax="#repo-content-pjax-container" data-turbo-frame="repo-content-turbo-frame" href="/dasmiq/passim">passim</a> </strong> <span></span><span class="Label Label--secondary v-align-middle mr-1">Public</span> </div> </div> <div id="repository-details-container" class="flex-shrink-0" data-turbo-replace style="max-width: 70%;"> <ul class="pagehead-actions flex-shrink-0 d-none d-md-inline" style="padding: 2px 0;"> <li> <a href="/login?return_to=%2Fdasmiq%2Fpassim" rel="nofollow" id="repository-details-watch-button" data-hydro-click="{"event_type":"authentication.click","payload":{"location_in_page":"notification subscription menu watch","repository_id":null,"auth_type":"LOG_IN","originating_url":"https://github.com/dasmiq/passim","user_id":null}}" data-hydro-click-hmac="40148d7290d10db491c580c8720229aba2316662375c801c9ae98482e2c7ae95" aria-label="You must be signed in to change notification settings" data-view-component="true" class="btn-sm btn"> <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-bell mr-2"> <path d="M8 16a2 2 0 0 0 1.985-1.75c.017-.137-.097-.25-.235-.25h-3.5c-.138 0-.252.113-.235.25A2 2 0 0 0 8 16ZM3 5a5 5 0 0 1 10 0v2.947c0 .05.015.098.042.139l1.703 2.555A1.519 1.519 0 0 1 13.482 13H2.518a1.516 1.516 0 0 1-1.263-2.36l1.703-2.554A.255.255 0 0 0 3 7.947Zm5-3.5A3.5 3.5 0 0 0 4.5 5v2.947c0 .346-.102.683-.294.97l-1.703 2.556a.017.017 0 0 0-.003.01l.001.006c0 .002.002.004.004.006l.006.004.007.001h10.964l.007-.001.006-.004.004-.006.001-.007a.017.017 0 0 0-.003-.01l-1.703-2.554a1.745 1.745 0 0 1-.294-.97V5A3.5 3.5 0 0 0 8 1.5Z"></path> </svg>Notifications </a> <tool-tip id="tooltip-dacfa90e-545e-4247-8716-36a109fc47e4" for="repository-details-watch-button" popover="manual" data-direction="s" data-type="description" data-view-component="true" class="sr-only position-absolute">You must be signed in to change notification settings</tool-tip> </li> <li> <a icon="repo-forked" id="fork-button" href="/login?return_to=%2Fdasmiq%2Fpassim" rel="nofollow" data-hydro-click="{"event_type":"authentication.click","payload":{"location_in_page":"repo details fork button","repository_id":14563064,"auth_type":"LOG_IN","originating_url":"https://github.com/dasmiq/passim","user_id":null}}" data-hydro-click-hmac="e40ca4ee54465a06048cf7b0b8992948850c08ba924e9abdd970e724fce05bbc" data-view-component="true" class="btn-sm btn"> <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-repo-forked mr-2"> <path d="M5 5.372v.878c0 .414.336.75.75.75h4.5a.75.75 0 0 0 .75-.75v-.878a2.25 2.25 0 1 1 1.5 0v.878a2.25 2.25 0 0 1-2.25 2.25h-1.5v2.128a2.251 2.251 0 1 1-1.5 0V8.5h-1.5A2.25 2.25 0 0 1 3.5 6.25v-.878a2.25 2.25 0 1 1 1.5 0ZM5 3.25a.75.75 0 1 0-1.5 0 .75.75 0 0 0 1.5 0Zm6.75.75a.75.75 0 1 0 0-1.5.75.75 0 0 0 0 1.5Zm-3 8.75a.75.75 0 1 0-1.5 0 .75.75 0 0 0 1.5 0Z"></path> </svg>Fork <span id="repo-network-counter" data-pjax-replace="true" data-turbo-replace="true" title="15" data-view-component="true" class="Counter">15</span> </a> </li> <li> <div data-view-component="true" class="BtnGroup d-flex"> <a href="/login?return_to=%2Fdasmiq%2Fpassim" rel="nofollow" data-hydro-click="{"event_type":"authentication.click","payload":{"location_in_page":"star button","repository_id":14563064,"auth_type":"LOG_IN","originating_url":"https://github.com/dasmiq/passim","user_id":null}}" data-hydro-click-hmac="b945f9c6acb9ea96f9774fd8899717874f2e50bb08a76e9da4e754dd53fe6b0c" aria-label="You must be signed in to star a repository" data-view-component="true" class="tooltipped tooltipped-sw btn-sm btn"> <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-star v-align-text-bottom d-inline-block mr-2"> <path d="M8 .25a.75.75 0 0 1 .673.418l1.882 3.815 4.21.612a.75.75 0 0 1 .416 1.279l-3.046 2.97.719 4.192a.751.751 0 0 1-1.088.791L8 12.347l-3.766 1.98a.75.75 0 0 1-1.088-.79l.72-4.194L.818 6.374a.75.75 0 0 1 .416-1.28l4.21-.611L7.327.668A.75.75 0 0 1 8 .25Zm0 2.445L6.615 5.5a.75.75 0 0 1-.564.41l-3.097.45 2.24 2.184a.75.75 0 0 1 .216.664l-.528 3.084 2.769-1.456a.75.75 0 0 1 .698 0l2.77 1.456-.53-3.084a.75.75 0 0 1 .216-.664l2.24-2.183-3.096-.45a.75.75 0 0 1-.564-.41L8 2.694Z"></path> </svg><span data-view-component="true" class="d-inline"> Star </span> <span id="repo-stars-counter-star" aria-label="97 users starred this repository" data-singular-suffix="user starred this repository" data-plural-suffix="users starred this repository" data-turbo-replace="true" title="97" data-view-component="true" class="Counter js-social-count">97</span> </a></div> </li> </ul> </div> </div> <div id="responsive-meta-container" data-turbo-replace> <div class="d-block d-md-none mb-2 px-3 px-md-4 px-lg-5"> <p class="f4 mb-3 "> Detect and align similar passages </p> <div class="mb-3"> <a class="Link--secondary no-underline mr-3" href="/dasmiq/passim/stargazers"> <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-star mr-1"> <path d="M8 .25a.75.75 0 0 1 .673.418l1.882 3.815 4.21.612a.75.75 0 0 1 .416 1.279l-3.046 2.97.719 4.192a.751.751 0 0 1-1.088.791L8 12.347l-3.766 1.98a.75.75 0 0 1-1.088-.79l.72-4.194L.818 6.374a.75.75 0 0 1 .416-1.28l4.21-.611L7.327.668A.75.75 0 0 1 8 .25Zm0 2.445L6.615 5.5a.75.75 0 0 1-.564.41l-3.097.45 2.24 2.184a.75.75 0 0 1 .216.664l-.528 3.084 2.769-1.456a.75.75 0 0 1 .698 0l2.77 1.456-.53-3.084a.75.75 0 0 1 .216-.664l2.24-2.183-3.096-.45a.75.75 0 0 1-.564-.41L8 2.694Z"></path> </svg> <span class="text-bold">97</span> stars </a> <a class="Link--secondary no-underline mr-3" href="/dasmiq/passim/forks"> <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-repo-forked mr-1"> <path d="M5 5.372v.878c0 .414.336.75.75.75h4.5a.75.75 0 0 0 .75-.75v-.878a2.25 2.25 0 1 1 1.5 0v.878a2.25 2.25 0 0 1-2.25 2.25h-1.5v2.128a2.251 2.251 0 1 1-1.5 0V8.5h-1.5A2.25 2.25 0 0 1 3.5 6.25v-.878a2.25 2.25 0 1 1 1.5 0ZM5 3.25a.75.75 0 1 0-1.5 0 .75.75 0 0 0 1.5 0Zm6.75.75a.75.75 0 1 0 0-1.5.75.75 0 0 0 0 1.5Zm-3 8.75a.75.75 0 1 0-1.5 0 .75.75 0 0 0 1.5 0Z"></path> </svg> <span class="text-bold">15</span> forks </a> <a class="Link--secondary no-underline mr-3 d-inline-block" href="/dasmiq/passim/branches"> <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-git-branch mr-1"> <path d="M9.5 3.25a2.25 2.25 0 1 1 3 2.122V6A2.5 2.5 0 0 1 10 8.5H6a1 1 0 0 0-1 1v1.128a2.251 2.251 0 1 1-1.5 0V5.372a2.25 2.25 0 1 1 1.5 0v1.836A2.493 2.493 0 0 1 6 7h4a1 1 0 0 0 1-1v-.628A2.25 2.25 0 0 1 9.5 3.25Zm-6 0a.75.75 0 1 0 1.5 0 .75.75 0 0 0-1.5 0Zm8.25-.75a.75.75 0 1 0 0 1.5.75.75 0 0 0 0-1.5ZM4.25 12a.75.75 0 1 0 0 1.5.75.75 0 0 0 0-1.5Z"></path> </svg> <span>Branches</span> </a> <a class="Link--secondary no-underline d-inline-block" href="/dasmiq/passim/tags"> <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-tag mr-1"> <path d="M1 7.775V2.75C1 1.784 1.784 1 2.75 1h5.025c.464 0 .91.184 1.238.513l6.25 6.25a1.75 1.75 0 0 1 0 2.474l-5.026 5.026a1.75 1.75 0 0 1-2.474 0l-6.25-6.25A1.752 1.752 0 0 1 1 7.775Zm1.5 0c0 .066.026.13.073.177l6.25 6.25a.25.25 0 0 0 .354 0l5.025-5.025a.25.25 0 0 0 0-.354l-6.25-6.25a.25.25 0 0 0-.177-.073H2.75a.25.25 0 0 0-.25.25ZM6 5a1 1 0 1 1 0 2 1 1 0 0 1 0-2Z"></path> </svg> <span>Tags</span> </a> <a class="Link--secondary no-underline d-inline-block" href="/dasmiq/passim/activity"> <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-pulse mr-1"> <path d="M6 2c.306 0 .582.187.696.471L10 10.731l1.304-3.26A.751.751 0 0 1 12 7h3.25a.75.75 0 0 1 0 1.5h-2.742l-1.812 4.528a.751.751 0 0 1-1.392 0L6 4.77 4.696 8.03A.75.75 0 0 1 4 8.5H.75a.75.75 0 0 1 0-1.5h2.742l1.812-4.529A.751.751 0 0 1 6 2Z"></path> </svg> <span>Activity</span> </a> </div> <div class="d-flex flex-wrap gap-2"> <div class="flex-1"> <div data-view-component="true" class="BtnGroup d-flex"> <a href="/login?return_to=%2Fdasmiq%2Fpassim" rel="nofollow" data-hydro-click="{"event_type":"authentication.click","payload":{"location_in_page":"star button","repository_id":14563064,"auth_type":"LOG_IN","originating_url":"https://github.com/dasmiq/passim","user_id":null}}" 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id=\"user-content-passim\" class=\"anchor\" aria-label=\"Permalink: passim\" href=\"#passim\"\u003e\u003csvg class=\"octicon octicon-link\" viewBox=\"0 0 16 16\" version=\"1.1\" width=\"16\" height=\"16\" aria-hidden=\"true\"\u003e\u003cpath d=\"m7.775 3.275 1.25-1.25a3.5 3.5 0 1 1 4.95 4.95l-2.5 2.5a3.5 3.5 0 0 1-4.95 0 .751.751 0 0 1 .018-1.042.751.751 0 0 1 1.042-.018 1.998 1.998 0 0 0 2.83 0l2.5-2.5a2.002 2.002 0 0 0-2.83-2.83l-1.25 1.25a.751.751 0 0 1-1.042-.018.751.751 0 0 1-.018-1.042Zm-4.69 9.64a1.998 1.998 0 0 0 2.83 0l1.25-1.25a.751.751 0 0 1 1.042.018.751.751 0 0 1 .018 1.042l-1.25 1.25a3.5 3.5 0 1 1-4.95-4.95l2.5-2.5a3.5 3.5 0 0 1 4.95 0 .751.751 0 0 1-.018 1.042.751.751 0 0 1-1.042.018 1.998 1.998 0 0 0-2.83 0l-2.5 2.5a1.998 1.998 0 0 0 0 2.83Z\"\u003e\u003c/path\u003e\u003c/svg\u003e\u003c/a\u003e\u003c/div\u003e\n\u003cp dir=\"auto\"\u003eThis project implements algorithms for detecting and aligning similar passages in text. It can be run either in query mode, to find quoted passages from a reference text, or all-pairs mode, to find all pairs of passages within longer documents with substantial alignments.\u003c/p\u003e\n\u003cdiv class=\"markdown-heading\" dir=\"auto\"\u003e\u003ch2 tabindex=\"-1\" class=\"heading-element\" dir=\"auto\"\u003eDocumentation\u003c/h2\u003e\u003ca id=\"user-content-documentation\" class=\"anchor\" aria-label=\"Permalink: Documentation\" href=\"#documentation\"\u003e\u003csvg class=\"octicon octicon-link\" viewBox=\"0 0 16 16\" version=\"1.1\" width=\"16\" height=\"16\" aria-hidden=\"true\"\u003e\u003cpath d=\"m7.775 3.275 1.25-1.25a3.5 3.5 0 1 1 4.95 4.95l-2.5 2.5a3.5 3.5 0 0 1-4.95 0 .751.751 0 0 1 .018-1.042.751.751 0 0 1 1.042-.018 1.998 1.998 0 0 0 2.83 0l2.5-2.5a2.002 2.002 0 0 0-2.83-2.83l-1.25 1.25a.751.751 0 0 1-1.042-.018.751.751 0 0 1-.018-1.042Zm-4.69 9.64a1.998 1.998 0 0 0 2.83 0l1.25-1.25a.751.751 0 0 1 1.042.018.751.751 0 0 1 .018 1.042l-1.25 1.25a3.5 3.5 0 1 1-4.95-4.95l2.5-2.5a3.5 3.5 0 0 1 4.95 0 .751.751 0 0 1-.018 1.042.751.751 0 0 1-1.042.018 1.998 1.998 0 0 0-2.83 0l-2.5 2.5a1.998 1.998 0 0 0 0 2.83Z\"\u003e\u003c/path\u003e\u003c/svg\u003e\u003c/a\u003e\u003c/div\u003e\n\u003cp dir=\"auto\"\u003eBesides the documentation in this README file, you might find it helpful to read:\u003c/p\u003e\n\u003cul dir=\"auto\"\u003e\n\u003cli\u003e\u003ca href=\"/dasmiq/passim/blob/main/docs/passim_quickstart.ipynb\"\u003eGetting Started with \u003ccode\u003epassim\u003c/code\u003e\u003c/a\u003e, an IPython notebook that walks through installation and basic usage; and\u003c/li\u003e\n\u003cli\u003e\u003ca href=\"https://github.com/dasmiq/ph-submissions/blob/passim2-replace/en/published/originals/detecting-text-reuse-with-passim.md\"\u003eDetecting Text Reuse with Passim 2.0\u003c/a\u003e, an updated version of the tutorial on \u003ca href=\"https://programminghistorian.org/\" rel=\"nofollow\"\u003e\u003cem\u003eProgramming Historian\u003c/em\u003e\u003c/a\u003e.\u003c/li\u003e\n\u003c/ul\u003e\n\u003cp dir=\"auto\"\u003eIf you are using the earlier \u003cem\u003eProgramming Historian\u003c/em\u003e tutorial on passim version 1, see \u003ca href=\"https://github.com/dasmiq/ph-submissions/blob/passim1-release/en/published/originals/detecting-text-reuse-with-passim.md\"\u003ethis updated version\u003c/a\u003e that corrects links to the source code.\u003c/p\u003e\n\u003cdiv class=\"markdown-heading\" dir=\"auto\"\u003e\u003ch2 tabindex=\"-1\" class=\"heading-element\" dir=\"auto\"\u003eInstallation\u003c/h2\u003e\u003ca id=\"user-content-installation\" class=\"anchor\" aria-label=\"Permalink: Installation\" href=\"#installation\"\u003e\u003csvg class=\"octicon octicon-link\" viewBox=\"0 0 16 16\" version=\"1.1\" width=\"16\" height=\"16\" aria-hidden=\"true\"\u003e\u003cpath d=\"m7.775 3.275 1.25-1.25a3.5 3.5 0 1 1 4.95 4.95l-2.5 2.5a3.5 3.5 0 0 1-4.95 0 .751.751 0 0 1 .018-1.042.751.751 0 0 1 1.042-.018 1.998 1.998 0 0 0 2.83 0l2.5-2.5a2.002 2.002 0 0 0-2.83-2.83l-1.25 1.25a.751.751 0 0 1-1.042-.018.751.751 0 0 1-.018-1.042Zm-4.69 9.64a1.998 1.998 0 0 0 2.83 0l1.25-1.25a.751.751 0 0 1 1.042.018.751.751 0 0 1 .018 1.042l-1.25 1.25a3.5 3.5 0 1 1-4.95-4.95l2.5-2.5a3.5 3.5 0 0 1 4.95 0 .751.751 0 0 1-.018 1.042.751.751 0 0 1-1.042.018 1.998 1.998 0 0 0-2.83 0l-2.5 2.5a1.998 1.998 0 0 0 0 2.83Z\"\u003e\u003c/path\u003e\u003c/svg\u003e\u003c/a\u003e\u003c/div\u003e\n\u003cp dir=\"auto\"\u003ePassim relies on \u003ca href=\"http://spark.apache.org\" rel=\"nofollow\"\u003eApache Spark\u003c/a\u003e to manage parallel computations, either on a single machine or a cluster. Spark, in turn, requires Java to run with the \u003ccode\u003ejava\u003c/code\u003e command. In its default configuration, it also expects Python 3 to be runnable with the \u003ccode\u003epython\u003c/code\u003e command. There are ways to configure your system differently using various environment variables, but having these defaults will make your life easier.\u003c/p\u003e\n\u003cp dir=\"auto\"\u003eOnce you have java and python installed, the easiest way to install the latest version of passim is with the \u003ccode\u003epip\u003c/code\u003e command. Since passim requires Python 3, you may need to use \u003ccode\u003epip3\u003c/code\u003e on some systems.\u003c/p\u003e\n\u003cp dir=\"auto\"\u003eThe easiest way to install Passim is to have \u003ccode\u003epip\u003c/code\u003e download from github directly:\u003c/p\u003e\n\u003cdiv class=\"snippet-clipboard-content notranslate position-relative overflow-auto\" data-snippet-clipboard-copy-content=\"$ pip install git+https://github.com/dasmiq/passim.git\"\u003e\u003cpre class=\"notranslate\"\u003e\u003ccode\u003e$ pip install git+https://github.com/dasmiq/passim.git\n\u003c/code\u003e\u003c/pre\u003e\u003c/div\u003e\n\u003cp dir=\"auto\"\u003eIf pip complains that you don't have access to install python packages on the system, you can use the \u003ccode\u003e--user\u003c/code\u003e option to install in your home directory, like so:\u003c/p\u003e\n\u003cdiv class=\"snippet-clipboard-content notranslate position-relative overflow-auto\" data-snippet-clipboard-copy-content=\"$ pip install --user git+https://github.com/dasmiq/passim.git\"\u003e\u003cpre class=\"notranslate\"\u003e\u003ccode\u003e$ pip install --user git+https://github.com/dasmiq/passim.git\n\u003c/code\u003e\u003c/pre\u003e\u003c/div\u003e\n\u003cp dir=\"auto\"\u003eIf you've cloned the source code, you can run\u003c/p\u003e\n\u003cdiv class=\"snippet-clipboard-content notranslate position-relative overflow-auto\" data-snippet-clipboard-copy-content=\"pip install .\"\u003e\u003cpre class=\"notranslate\"\u003e\u003ccode\u003epip install .\n\u003c/code\u003e\u003c/pre\u003e\u003c/div\u003e\n\u003cp dir=\"auto\"\u003ewith or without the \u003ccode\u003e--user\u003c/code\u003e option, as needed.\u003c/p\u003e\n\u003cp dir=\"auto\"\u003eIt is possible that \u003ccode\u003epip\u003c/code\u003e might install passim in a location not in your \u003ccode\u003ePATH\u003c/code\u003e. If so, run \u003ccode\u003epip show --files passim\u003c/code\u003e to see where it is; you can then modify your \u003ccode\u003ePATH\u003c/code\u003e to find it.\u003c/p\u003e\n\u003cp dir=\"auto\"\u003eSince passim defaults to the JSON format for input and output, it is convenient to have the \u003ca href=\"http://stedolan.github.io/jq/\" rel=\"nofollow\"\u003ecommand-line JSON processor jq\u003c/a\u003e installed.\u003c/p\u003e\n\u003cdiv class=\"markdown-heading\" dir=\"auto\"\u003e\u003ch2 tabindex=\"-1\" class=\"heading-element\" dir=\"auto\"\u003eAligning and Clustering Matching Passage Pairs\u003c/h2\u003e\u003ca id=\"user-content-aligning-and-clustering-matching-passage-pairs\" class=\"anchor\" aria-label=\"Permalink: Aligning and Clustering Matching Passage Pairs\" href=\"#aligning-and-clustering-matching-passage-pairs\"\u003e\u003csvg class=\"octicon octicon-link\" viewBox=\"0 0 16 16\" version=\"1.1\" width=\"16\" height=\"16\" aria-hidden=\"true\"\u003e\u003cpath d=\"m7.775 3.275 1.25-1.25a3.5 3.5 0 1 1 4.95 4.95l-2.5 2.5a3.5 3.5 0 0 1-4.95 0 .751.751 0 0 1 .018-1.042.751.751 0 0 1 1.042-.018 1.998 1.998 0 0 0 2.83 0l2.5-2.5a2.002 2.002 0 0 0-2.83-2.83l-1.25 1.25a.751.751 0 0 1-1.042-.018.751.751 0 0 1-.018-1.042Zm-4.69 9.64a1.998 1.998 0 0 0 2.83 0l1.25-1.25a.751.751 0 0 1 1.042.018.751.751 0 0 1 .018 1.042l-1.25 1.25a3.5 3.5 0 1 1-4.95-4.95l2.5-2.5a3.5 3.5 0 0 1 4.95 0 .751.751 0 0 1-.018 1.042.751.751 0 0 1-1.042.018 1.998 1.998 0 0 0-2.83 0l-2.5 2.5a1.998 1.998 0 0 0 0 2.83Z\"\u003e\u003c/path\u003e\u003c/svg\u003e\u003c/a\u003e\u003c/div\u003e\n\u003cdiv class=\"markdown-heading\" dir=\"auto\"\u003e\u003ch3 tabindex=\"-1\" class=\"heading-element\" dir=\"auto\"\u003eStructuring the Input\u003c/h3\u003e\u003ca id=\"user-content-structuring-the-input\" class=\"anchor\" aria-label=\"Permalink: Structuring the Input\" href=\"#structuring-the-input\"\u003e\u003csvg class=\"octicon octicon-link\" viewBox=\"0 0 16 16\" version=\"1.1\" width=\"16\" height=\"16\" aria-hidden=\"true\"\u003e\u003cpath d=\"m7.775 3.275 1.25-1.25a3.5 3.5 0 1 1 4.95 4.95l-2.5 2.5a3.5 3.5 0 0 1-4.95 0 .751.751 0 0 1 .018-1.042.751.751 0 0 1 1.042-.018 1.998 1.998 0 0 0 2.83 0l2.5-2.5a2.002 2.002 0 0 0-2.83-2.83l-1.25 1.25a.751.751 0 0 1-1.042-.018.751.751 0 0 1-.018-1.042Zm-4.69 9.64a1.998 1.998 0 0 0 2.83 0l1.25-1.25a.751.751 0 0 1 1.042.018.751.751 0 0 1 .018 1.042l-1.25 1.25a3.5 3.5 0 1 1-4.95-4.95l2.5-2.5a3.5 3.5 0 0 1 4.95 0 .751.751 0 0 1-.018 1.042.751.751 0 0 1-1.042.018 1.998 1.998 0 0 0-2.83 0l-2.5 2.5a1.998 1.998 0 0 0 0 2.83Z\"\u003e\u003c/path\u003e\u003c/svg\u003e\u003c/a\u003e\u003c/div\u003e\n\u003cp dir=\"auto\"\u003eThe input to passim is a set of \u003cem\u003edocuments\u003c/em\u003e. Depending on the kind of data you have, you might choose documents to be whole books, pages of books, whole issues of newspapers, individual newspaper articles, etc. Minimally, a document consists of an identifier string and a single string of text content.\u003c/p\u003e\n\u003cp dir=\"auto\"\u003eFor many text reuse detection problems, it is useful to group documents into \u003cem\u003eseries\u003c/em\u003e. Text reuse within series could then be ignored. We may, for example, be less interested in the masthead and ads that appear week after week in the same newspaper and more interested in articles that propagate from one city's newspapers to another's. In that case, we would declare all issues of the same newspaper—or all articles within those issues—to have the same series. Similarly, we might define documents to be the pages or chapters of a book and series to be whole books.\u003c/p\u003e\n\u003cp dir=\"auto\"\u003eThe default input format for documents is in a file or set of files containing one JSON record per line, i.e., the \u003ca href=\"https://jsonlines.org/\" rel=\"nofollow\"\u003eJSON Lines format\u003c/a\u003e. The record for a single document with the required \u003ccode\u003eid\u003c/code\u003e and \u003ccode\u003etext\u003c/code\u003e fields, as well as a \u003ccode\u003eseries\u003c/code\u003e field, would look like:\u003c/p\u003e\n\u003cdiv class=\"snippet-clipboard-content notranslate position-relative overflow-auto\" data-snippet-clipboard-copy-content=\"{\u0026quot;id\u0026quot;: \u0026quot;d1\u0026quot;, \u0026quot;series\u0026quot;: \u0026quot;abc\u0026quot;, \u0026quot;text\u0026quot;: \u0026quot;This is text.\u0026quot;}\"\u003e\u003cpre class=\"notranslate\"\u003e\u003ccode\u003e{\"id\": \"d1\", \"series\": \"abc\", \"text\": \"This is text.\"}\n\u003c/code\u003e\u003c/pre\u003e\u003c/div\u003e\n\u003cp dir=\"auto\"\u003eNote that this must be a single line in the file. This JSON record format has two important differences from general-purpose JSON files. First, the JSON records for each document are concatenated together, rather than being nested inside a top-level array. Second, each record must be contained on one line, rather than extending over multiple lines until the closing curly brace. These restrictions make it more efficient to process in parallel large numbers of documents spread across multiple files.\u003c/p\u003e\n\u003cp dir=\"auto\"\u003eIn addition to the fields \u003ccode\u003eid\u003c/code\u003e, \u003ccode\u003etext\u003c/code\u003e, and \u003ccode\u003eseries\u003c/code\u003e, other metadata included in the record for each document will be passed through into the output.\u003c/p\u003e\n\u003cp dir=\"auto\"\u003eNatural language text is redundant, and adding markup and JSON field names increases the redundancy. Spark and passim support several compression schemes. For relatively small files, gzip is adequate; however, when the input files are large enough that they do not comfortably fit in memory, bzip2 is preferable since programs can split these files into blocks before decompressing.\u003c/p\u003e\n\u003cdiv class=\"markdown-heading\" dir=\"auto\"\u003e\u003ch3 tabindex=\"-1\" class=\"heading-element\" dir=\"auto\"\u003eRunning passim\u003c/h3\u003e\u003ca id=\"user-content-running-passim\" class=\"anchor\" aria-label=\"Permalink: Running passim\" href=\"#running-passim\"\u003e\u003csvg class=\"octicon octicon-link\" viewBox=\"0 0 16 16\" version=\"1.1\" width=\"16\" height=\"16\" aria-hidden=\"true\"\u003e\u003cpath d=\"m7.775 3.275 1.25-1.25a3.5 3.5 0 1 1 4.95 4.95l-2.5 2.5a3.5 3.5 0 0 1-4.95 0 .751.751 0 0 1 .018-1.042.751.751 0 0 1 1.042-.018 1.998 1.998 0 0 0 2.83 0l2.5-2.5a2.002 2.002 0 0 0-2.83-2.83l-1.25 1.25a.751.751 0 0 1-1.042-.018.751.751 0 0 1-.018-1.042Zm-4.69 9.64a1.998 1.998 0 0 0 2.83 0l1.25-1.25a.751.751 0 0 1 1.042.018.751.751 0 0 1 .018 1.042l-1.25 1.25a3.5 3.5 0 1 1-4.95-4.95l2.5-2.5a3.5 3.5 0 0 1 4.95 0 .751.751 0 0 1-.018 1.042.751.751 0 0 1-1.042.018 1.998 1.998 0 0 0-2.83 0l-2.5 2.5a1.998 1.998 0 0 0 0 2.83Z\"\u003e\u003c/path\u003e\u003c/svg\u003e\u003c/a\u003e\u003c/div\u003e\n\u003cp dir=\"auto\"\u003eThe simplest invocation contains list of inputs and a directory name for the output.\u003c/p\u003e\n\u003cdiv class=\"snippet-clipboard-content notranslate position-relative overflow-auto\" data-snippet-clipboard-copy-content=\"$ passim input.json output\"\u003e\u003cpre class=\"notranslate\"\u003e\u003ccode\u003e$ passim input.json output\n\u003c/code\u003e\u003c/pre\u003e\u003c/div\u003e\n\u003cp dir=\"auto\"\u003eFollowing Spark conventions, input may be a single file, a single directory full of files, or a \u003ccode\u003e*\u003c/code\u003e wildcard (glob) expression. Multiple input paths should be separated by commas. Files may also be compressed.\u003c/p\u003e\n\u003cdiv class=\"snippet-clipboard-content notranslate position-relative overflow-auto\" data-snippet-clipboard-copy-content=\"$ passim \u0026quot;{input.json,directory-of-json-files,some*.json.bz2}\u0026quot; output\"\u003e\u003cpre class=\"notranslate\"\u003e\u003ccode\u003e$ passim \"{input.json,directory-of-json-files,some*.json.bz2}\" output\n\u003c/code\u003e\u003c/pre\u003e\u003c/div\u003e\n\u003cp dir=\"auto\"\u003eOutput is written to a directory that, on completion, will contain an \u003ccode\u003eout.json\u003c/code\u003e directory with \u003ccode\u003epart-*\u003c/code\u003e files rather than a single file. This allows multiple workers to write it efficiently (and read it back in) in parallel.\u003c/p\u003e\n\u003cp dir=\"auto\"\u003eThe output contains one JSON record for each reused passage. Each record echoes the fields in the JSON input and adds the following extra fields to describe the clustered passages:\u003c/p\u003e\n\u003cmarkdown-accessiblity-table\u003e\u003ctable\u003e\n\u003cthead\u003e\n\u003ctr\u003e\n\u003cth\u003eField\u003c/th\u003e\n\u003cth\u003eDescription\u003c/th\u003e\n\u003c/tr\u003e\n\u003c/thead\u003e\n\u003ctbody\u003e\n\u003ctr\u003e\n\u003ctd\u003e\u003ccode\u003ecluster\u003c/code\u003e\u003c/td\u003e\n\u003ctd\u003eunique identifier for each cluster\u003c/td\u003e\n\u003c/tr\u003e\n\u003ctr\u003e\n\u003ctd\u003e\u003ccode\u003esize\u003c/code\u003e\u003c/td\u003e\n\u003ctd\u003enumber of passages in each cluster\u003c/td\u003e\n\u003c/tr\u003e\n\u003ctr\u003e\n\u003ctd\u003e\u003ccode\u003ebegin\u003c/code\u003e\u003c/td\u003e\n\u003ctd\u003echaracter offset into the document where the reused passage begins\u003c/td\u003e\n\u003c/tr\u003e\n\u003ctr\u003e\n\u003ctd\u003e\u003ccode\u003eend\u003c/code\u003e\u003c/td\u003e\n\u003ctd\u003echaracter offset into the document where the reused passage ends\u003c/td\u003e\n\u003c/tr\u003e\n\u003ctr\u003e\n\u003ctd\u003e\u003ccode\u003euid\u003c/code\u003e\u003c/td\u003e\n\u003ctd\u003eunique internal ID for each document, used for debugging\u003c/td\u003e\n\u003c/tr\u003e\n\u003ctr\u003e\n\u003ctd\u003e\u003ccode\u003esrc\u003c/code\u003e\u003c/td\u003e\n\u003ctd\u003epreceding passage in the cluster inferred to be the source of this passage\u003c/td\u003e\n\u003c/tr\u003e\n\u003ctr\u003e\n\u003ctd\u003e\u003ccode\u003epboiler\u003c/code\u003e\u003c/td\u003e\n\u003ctd\u003eproportion of links in the cluster among texts from the same series\u003c/td\u003e\n\u003c/tr\u003e\n\u003c/tbody\u003e\n\u003c/table\u003e\u003c/markdown-accessiblity-table\u003e\n\u003cp dir=\"auto\"\u003eIn addition, \u003ccode\u003epages\u003c/code\u003e, \u003ccode\u003eregions\u003c/code\u003e, and \u003ccode\u003elocs\u003c/code\u003e include information about\nlocations in the underlying text of the reused passage. See \u003ca href=\"#locations\"\u003eMarking\nLocations inside Documents\u003c/a\u003e below.\u003c/p\u003e\n\u003cp dir=\"auto\"\u003eThe default input and output format is JSON. Use the \u003ccode\u003e--input-format parquet\u003c/code\u003e and \u003ccode\u003e--output-format parquet\u003c/code\u003e to use the compressed binary Parquet format, which can speed up later processing.\u003c/p\u003e\n\u003cp dir=\"auto\"\u003eIf, in addition to the clusters, you want to output pairwise alignments between all matching passages, invoke passim with the \u003ccode\u003e--pairwise\u003c/code\u003e flag. These alignments will be in \u003ccode\u003ealign.json\u003c/code\u003e or \u003ccode\u003ealign.parquet\u003c/code\u003e, depending on which output format you choose.\u003c/p\u003e\n\u003cp dir=\"auto\"\u003eUse the \u003ccode\u003e--help\u003c/code\u003e option to see a full list of options.\u003c/p\u003e\n\u003cp dir=\"auto\"\u003ePass parameters to the underlying Spark processes using the \u003ccode\u003eSPARK_SUBMIT_ARGS\u003c/code\u003e environment variable. For example, to run passim on a local machine with 10 cores and 200GB of memory, run the following command:\u003c/p\u003e\n\u003cdiv class=\"snippet-clipboard-content notranslate position-relative overflow-auto\" data-snippet-clipboard-copy-content=\"$ SPARK_SUBMIT_ARGS='--master local[10] --driver-memory 200G --executor-memory 200G' passim input.json output\"\u003e\u003cpre class=\"notranslate\"\u003e\u003ccode\u003e$ SPARK_SUBMIT_ARGS='--master local[10] --driver-memory 200G --executor-memory 200G' passim input.json output\n\u003c/code\u003e\u003c/pre\u003e\u003c/div\u003e\n\u003cp dir=\"auto\"\u003eSee the \u003ca href=\"https://spark.apache.org/docs/latest/index.html\" rel=\"nofollow\"\u003eSpark documentation\u003c/a\u003e for further configuration options.\u003c/p\u003e\n\u003cdiv class=\"markdown-heading\" dir=\"auto\"\u003e\u003ch3 tabindex=\"-1\" class=\"heading-element\" dir=\"auto\"\u003eControlling passim's n-gram filtering\u003c/h3\u003e\u003ca id=\"user-content-controlling-passims-n-gram-filtering\" class=\"anchor\" aria-label=\"Permalink: Controlling passim's n-gram filtering\" href=\"#controlling-passims-n-gram-filtering\"\u003e\u003csvg class=\"octicon octicon-link\" viewBox=\"0 0 16 16\" version=\"1.1\" width=\"16\" height=\"16\" aria-hidden=\"true\"\u003e\u003cpath d=\"m7.775 3.275 1.25-1.25a3.5 3.5 0 1 1 4.95 4.95l-2.5 2.5a3.5 3.5 0 0 1-4.95 0 .751.751 0 0 1 .018-1.042.751.751 0 0 1 1.042-.018 1.998 1.998 0 0 0 2.83 0l2.5-2.5a2.002 2.002 0 0 0-2.83-2.83l-1.25 1.25a.751.751 0 0 1-1.042-.018.751.751 0 0 1-.018-1.042Zm-4.69 9.64a1.998 1.998 0 0 0 2.83 0l1.25-1.25a.751.751 0 0 1 1.042.018.751.751 0 0 1 .018 1.042l-1.25 1.25a3.5 3.5 0 1 1-4.95-4.95l2.5-2.5a3.5 3.5 0 0 1 4.95 0 .751.751 0 0 1-.018 1.042.751.751 0 0 1-1.042.018 1.998 1.998 0 0 0-2.83 0l-2.5 2.5a1.998 1.998 0 0 0 0 2.83Z\"\u003e\u003c/path\u003e\u003c/svg\u003e\u003c/a\u003e\u003c/div\u003e\n\u003cp dir=\"auto\"\u003eOne of the main goals of passim was to work well with large collections. To do that, passim indexes spans of \u003cem\u003en\u003c/em\u003e input characters (i.e., n-grams) and then selects document pairs for alignment only if they share sufficient n-grams. After these pairs of input documents are selected for alignment, passim runs a full character-level alignment algorithm starting from the matching n-grams to produce the full output alignment.\u003c/p\u003e\n\u003cp dir=\"auto\"\u003eBy default, passim indexes character n-grams starting at word boundaries in order to find candidate passages to align. If your text is very noisy, you can index other n-grams, starting at the middle of words, with the \u003ccode\u003e--floating-ngrams\u003c/code\u003e flag. In any case, passim only indexes alphanumeric characters (as determined by python's \u003ccode\u003eisalnum\u003c/code\u003e function), skipping whitespace, punctuation, and other characters.\u003c/p\u003e\n\u003cp dir=\"auto\"\u003eSome useful parameters are:\u003c/p\u003e\n\u003cmarkdown-accessiblity-table\u003e\u003ctable\u003e\n\u003cthead\u003e\n\u003ctr\u003e\n\u003cth\u003eParameter\u003c/th\u003e\n\u003cth\u003eDefault value\u003c/th\u003e\n\u003cth\u003eDescription\u003c/th\u003e\n\u003c/tr\u003e\n\u003c/thead\u003e\n\u003ctbody\u003e\n\u003ctr\u003e\n\u003ctd\u003e\u003ccode\u003e-n\u003c/code\u003e\u003c/td\u003e\n\u003ctd\u003e25\u003c/td\u003e\n\u003ctd\u003eCharacter n-gram order for text-reuse detection\u003c/td\u003e\n\u003c/tr\u003e\n\u003ctr\u003e\n\u003ctd\u003e\u003ccode\u003e-l\u003c/code\u003e or \u003ccode\u003e--minDF\u003c/code\u003e\u003c/td\u003e\n\u003ctd\u003e2\u003c/td\u003e\n\u003ctd\u003eMinimum document frequency of n-grams indexed.\u003c/td\u003e\n\u003c/tr\u003e\n\u003ctr\u003e\n\u003ctd\u003e\u003ccode\u003e-u\u003c/code\u003e or \u003ccode\u003e--maxDF\u003c/code\u003e\u003c/td\u003e\n\u003ctd\u003e100\u003c/td\u003e\n\u003ctd\u003eMaximum document frequency of n-grams indexed.\u003c/td\u003e\n\u003c/tr\u003e\n\u003ctr\u003e\n\u003ctd\u003e\u003ccode\u003e-m\u003c/code\u003e or \u003ccode\u003e--min-match\u003c/code\u003e\u003c/td\u003e\n\u003ctd\u003e5\u003c/td\u003e\n\u003ctd\u003eMinimum number of matching n-grams between two documents.\u003c/td\u003e\n\u003c/tr\u003e\n\u003ctr\u003e\n\u003ctd\u003e\u003ccode\u003e-a\u003c/code\u003e or \u003ccode\u003e--min-align\u003c/code\u003e\u003c/td\u003e\n\u003ctd\u003e50\u003c/td\u003e\n\u003ctd\u003eMinimum number of characters in aligned passages.\u003c/td\u003e\n\u003c/tr\u003e\n\u003ctr\u003e\n\u003ctd\u003e\u003ccode\u003e-g\u003c/code\u003e or \u003ccode\u003e--gap\u003c/code\u003e\u003c/td\u003e\n\u003ctd\u003e600\u003c/td\u003e\n\u003ctd\u003ePassages more than this number of characters apart will be aligned separately.\u003c/td\u003e\n\u003c/tr\u003e\n\u003c/tbody\u003e\n\u003c/table\u003e\u003c/markdown-accessiblity-table\u003e\n\u003cp dir=\"auto\"\u003eWhen selecting values for these parameters, you are managing a precision-recall tradeoff. Shorter n-grams or lower minimum matches might produce more output alignments, but they might be less relevant.\u003c/p\u003e\n\u003cdiv class=\"markdown-heading\" dir=\"auto\"\u003e\u003ch3 tabindex=\"-1\" class=\"heading-element\" dir=\"auto\"\u003ePruning Alignments\u003c/h3\u003e\u003ca id=\"user-content-pruning-alignments\" class=\"anchor\" aria-label=\"Permalink: Pruning Alignments\" href=\"#pruning-alignments\"\u003e\u003csvg class=\"octicon octicon-link\" viewBox=\"0 0 16 16\" version=\"1.1\" width=\"16\" height=\"16\" aria-hidden=\"true\"\u003e\u003cpath d=\"m7.775 3.275 1.25-1.25a3.5 3.5 0 1 1 4.95 4.95l-2.5 2.5a3.5 3.5 0 0 1-4.95 0 .751.751 0 0 1 .018-1.042.751.751 0 0 1 1.042-.018 1.998 1.998 0 0 0 2.83 0l2.5-2.5a2.002 2.002 0 0 0-2.83-2.83l-1.25 1.25a.751.751 0 0 1-1.042-.018.751.751 0 0 1-.018-1.042Zm-4.69 9.64a1.998 1.998 0 0 0 2.83 0l1.25-1.25a.751.751 0 0 1 1.042.018.751.751 0 0 1 .018 1.042l-1.25 1.25a3.5 3.5 0 1 1-4.95-4.95l2.5-2.5a3.5 3.5 0 0 1 4.95 0 .751.751 0 0 1-.018 1.042.751.751 0 0 1-1.042.018 1.998 1.998 0 0 0-2.83 0l-2.5 2.5a1.998 1.998 0 0 0 0 2.83Z\"\u003e\u003c/path\u003e\u003c/svg\u003e\u003c/a\u003e\u003c/div\u003e\n\u003cp dir=\"auto\"\u003eThe text of documents input to passim is indexed to determine which pairs should be aligned. Often, document metadata can provide additional constraints on which documents should be aligned. If there were no constraints, every pair of documents in the input would be aligned, in both directions. These constraints on alignments are expressed by two arguments to passim: \u003ccode\u003e--fields\u003c/code\u003e and \u003ccode\u003e--filterpairs\u003c/code\u003e.\u003c/p\u003e\n\u003cp dir=\"auto\"\u003eThe \u003ccode\u003e--fields\u003c/code\u003e argument tells passim which fields in the input records to index when determining which documents to align. Fields has the syntax of SQL \u003ccode\u003eFROM\u003c/code\u003e clause as implemented by Apache Spark. Multiple fields may be passed by successfive command-line arguments. Use quotes to surround fields definitions containing spaces. In the following example, we ask passim to index the \u003ccode\u003edate\u003c/code\u003e field as is and to index the \u003ccode\u003eseries\u003c/code\u003e field by hashing it to a 64-bit integer and calling it \u003ccode\u003egid\u003c/code\u003e:\u003c/p\u003e\n\u003cdiv class=\"snippet-clipboard-content notranslate position-relative overflow-auto\" data-snippet-clipboard-copy-content=\"--fields date 'xxhash64(series) as gid'\"\u003e\u003cpre class=\"notranslate\"\u003e\u003ccode\u003e--fields date 'xxhash64(series) as gid'\n\u003c/code\u003e\u003c/pre\u003e\u003c/div\u003e\n\u003cp dir=\"auto\"\u003eSince document and series identifiers can be long strings, passim runs more efficiently if they are hashed to long integers by the (builtin) \u003ccode\u003exxhash64\u003c/code\u003e function.\u003c/p\u003e\n\u003cp dir=\"auto\"\u003eThe \u003ccode\u003e--filterpairs\u003c/code\u003e argument is an SQL expression that specifies which pairs of documents are candidates for comparison. A candidate pair consists of a \"source\" document, whose field names are identical to those in the input, and a \"target\" document, whose field names have a \"2\" appended to them. This is similar to the left- and right-handed sides of a SQL JOIN; in fact, passim is effectively performing a (massively pruned) self-join on the table of input documents.\u003c/p\u003e\n\u003cp dir=\"auto\"\u003eAs an example, consider aligning only document pairs where the \"source\" document predates the \"target\" document by 0 to 30 days. To perform efficient date arithmetic, we use Apache Spark's built-in \u003ccode\u003edate\u003c/code\u003e function to convert a string \u003ccode\u003edate\u003c/code\u003e field to an integer:\u003c/p\u003e\n\u003cdiv class=\"snippet-clipboard-content notranslate position-relative overflow-auto\" data-snippet-clipboard-copy-content=\"--fields 'date(date) as day' --filterpairs 'day \u0026lt; day2 AND (day2 - day) \u0026lt;= 30 AND uid \u0026lt;\u0026gt; uid2'\"\u003e\u003cpre class=\"notranslate\"\u003e\u003ccode\u003e--fields 'date(date) as day' --filterpairs 'day \u0026lt; day2 AND (day2 - day) \u0026lt;= 30 AND uid \u0026lt;\u0026gt; uid2'\n\u003c/code\u003e\u003c/pre\u003e\u003c/div\u003e\n\u003cp dir=\"auto\"\u003eSince the dates may be equal, we also include the constraint that the hashed document ids (\u003ccode\u003euid\u003c/code\u003e) be different. Had we not done this, the output would also have included alignments of every document with itself. The \u003ccode\u003euid\u003c/code\u003e field as a hash of the \u003ccode\u003eid\u003c/code\u003e field is always available. Note also the SQL inequality operator \u003ccode\u003e\u0026lt;\u0026gt;\u003c/code\u003e.\u003c/p\u003e\n\u003cp dir=\"auto\"\u003eBy default, passim uses \u003ccode\u003e--filterpairs uid \u0026lt; uid2\u003c/code\u003e to prune comparisons. In other words, passim imposes a total order on all documents based on the arbitrary but easily-comparable hashes of document identifiers.\u003c/p\u003e\n\u003cdiv class=\"markdown-heading\" dir=\"auto\"\u003e\u003ch3 tabindex=\"-1\" class=\"heading-element\" dir=\"auto\"\u003epassim vs. seriatim\u003c/h3\u003e\u003ca id=\"user-content-passim-vs-seriatim\" class=\"anchor\" aria-label=\"Permalink: passim vs. seriatim\" href=\"#passim-vs-seriatim\"\u003e\u003csvg class=\"octicon octicon-link\" viewBox=\"0 0 16 16\" version=\"1.1\" width=\"16\" height=\"16\" aria-hidden=\"true\"\u003e\u003cpath d=\"m7.775 3.275 1.25-1.25a3.5 3.5 0 1 1 4.95 4.95l-2.5 2.5a3.5 3.5 0 0 1-4.95 0 .751.751 0 0 1 .018-1.042.751.751 0 0 1 1.042-.018 1.998 1.998 0 0 0 2.83 0l2.5-2.5a2.002 2.002 0 0 0-2.83-2.83l-1.25 1.25a.751.751 0 0 1-1.042-.018.751.751 0 0 1-.018-1.042Zm-4.69 9.64a1.998 1.998 0 0 0 2.83 0l1.25-1.25a.751.751 0 0 1 1.042.018.751.751 0 0 1 .018 1.042l-1.25 1.25a3.5 3.5 0 1 1-4.95-4.95l2.5-2.5a3.5 3.5 0 0 1 4.95 0 .751.751 0 0 1-.018 1.042.751.751 0 0 1-1.042.018 1.998 1.998 0 0 0-2.83 0l-2.5 2.5a1.998 1.998 0 0 0 0 2.83Z\"\u003e\u003c/path\u003e\u003c/svg\u003e\u003c/a\u003e\u003c/div\u003e\n\u003cp dir=\"auto\"\u003eAs in previous versions, \u003ccode\u003epassim\u003c/code\u003e aligns pairs of passages that pass the filter criteria specified above. There is now also a top-level \u003ccode\u003eseriatim\u003c/code\u003e command that, for a given target passage, returns the source passage with the \u003cem\u003ebest\u003c/em\u003e alignment. This is useful for constructing directed graphs of text reuse. (In fact, \u003ccode\u003epassim\u003c/code\u003e is now equivalent to invoking \u003ccode\u003eseriatim\u003c/code\u003e with the \u003ccode\u003e--all-pairs\u003c/code\u003e option.)\u003c/p\u003e\n\u003cdiv class=\"markdown-heading\" dir=\"auto\"\u003e\u003ch3 tabindex=\"-1\" class=\"heading-element\" dir=\"auto\"\u003eProducing Aligned Output\u003c/h3\u003e\u003ca id=\"user-content-producing-aligned-output\" class=\"anchor\" aria-label=\"Permalink: Producing Aligned Output\" href=\"#producing-aligned-output\"\u003e\u003csvg class=\"octicon octicon-link\" viewBox=\"0 0 16 16\" version=\"1.1\" width=\"16\" height=\"16\" aria-hidden=\"true\"\u003e\u003cpath d=\"m7.775 3.275 1.25-1.25a3.5 3.5 0 1 1 4.95 4.95l-2.5 2.5a3.5 3.5 0 0 1-4.95 0 .751.751 0 0 1 .018-1.042.751.751 0 0 1 1.042-.018 1.998 1.998 0 0 0 2.83 0l2.5-2.5a2.002 2.002 0 0 0-2.83-2.83l-1.25 1.25a.751.751 0 0 1-1.042-.018.751.751 0 0 1-.018-1.042Zm-4.69 9.64a1.998 1.998 0 0 0 2.83 0l1.25-1.25a.751.751 0 0 1 1.042.018.751.751 0 0 1 .018 1.042l-1.25 1.25a3.5 3.5 0 1 1-4.95-4.95l2.5-2.5a3.5 3.5 0 0 1 4.95 0 .751.751 0 0 1-.018 1.042.751.751 0 0 1-1.042.018 1.998 1.998 0 0 0-2.83 0l-2.5 2.5a1.998 1.998 0 0 0 0 2.83Z\"\u003e\u003c/path\u003e\u003c/svg\u003e\u003c/a\u003e\u003c/div\u003e\n\u003cp dir=\"auto\"\u003eFor the purposes of collating related texts or aligning different transcriptions of the same text, one can produce output using the \u003ccode\u003e--docwise\u003c/code\u003e or \u003ccode\u003e--linewise\u003c/code\u003e flags. Each output record in \u003ccode\u003eout.json\u003c/code\u003e or \u003ccode\u003eout.parquet\u003c/code\u003e will then contain a document or line from the right-hand, \"target\" text, along with information about corresponding passages in the left-hand, \"witness\" or \"source\" text.\u003c/p\u003e\n\u003cp dir=\"auto\"\u003eIn the case of \u003ccode\u003e--docwise\u003c/code\u003e output. each output document contains an array of target line records, and each line record contains zero or more passages from the left-hand side that are aligned to that target line. Note that we specify \"passages\" from the left-hand side because the line breaks in the witness, if any, may not correspond to line breaks in the target texts. Both the target line and witness passage data may contain information about image coordinates, when available.\u003c/p\u003e\n\u003cp dir=\"auto\"\u003eFor \u003ccode\u003e--linewise\u003c/code\u003e output, each output document contains a single newline-delimited line from a target document. This line is identified by the input document \u003ccode\u003eid\u003c/code\u003e and a character offset \u003ccode\u003ebegin\u003c/code\u003e into the input text. The corresponding witness passage is identified with \u003ccode\u003ewid\u003c/code\u003e and \u003ccode\u003ewbegin\u003c/code\u003e.\u003c/p\u003e\n\u003cp dir=\"auto\"\u003eIn both of these output variants, target lines and witness passages are presented in their original textual form and in their aligned form, with hyphens to pad insertions and deletions. An example of a target line aligned to a single witness passage is:\u003c/p\u003e\n\u003cdiv class=\"snippet-clipboard-content notranslate position-relative overflow-auto\" data-snippet-clipboard-copy-content=\"{\n \u0026quot;id\u0026quot;: \u0026quot;scheffel_ekkehard_1855#f0261z751\u0026quot;,\n \u0026quot;begin\u0026quot;: 721,\n \u0026quot;text\u0026quot;: \u0026quot;Grammatik iſt ein hohes Weib, anders erſcheint ſie Holzhackern, an-\\n\u0026quot;,\n \u0026quot;wid\u0026quot;: \u0026quot;scheffel_ekkehard_1855/0261\u0026quot;,\n \u0026quot;wbegin\u0026quot;: 739,\n \u0026quot;wtext\u0026quot;: \u0026quot;Grammatik iſt ein hohes Weib, anders erſcheint ſie HolzhaFern , an=\\n\u0026quot;,\n \u0026quot;talg\u0026quot;: \u0026quot;Grammatik iſt ein hohes Weib, anders erſcheint ſie Holzhackern-, an‐\\n\u0026quot;,\n \u0026quot;walg\u0026quot;: \u0026quot;Grammatik iſt ein hohes Weib, anders erſcheint ſie Holzha-Fern , an=\\n\u0026quot;\n}\"\u003e\u003cpre class=\"notranslate\"\u003e\u003ccode\u003e{\n \"id\": \"scheffel_ekkehard_1855#f0261z751\",\n \"begin\": 721,\n \"text\": \"Grammatik iſt ein hohes Weib, anders erſcheint ſie Holzhackern, an-\\n\",\n \"wid\": \"scheffel_ekkehard_1855/0261\",\n \"wbegin\": 739,\n \"wtext\": \"Grammatik iſt ein hohes Weib, anders erſcheint ſie HolzhaFern , an=\\n\",\n \"talg\": \"Grammatik iſt ein hohes Weib, anders erſcheint ſie Holzhackern-, an‐\\n\",\n \"walg\": \"Grammatik iſt ein hohes Weib, anders erſcheint ſie Holzha-Fern , an=\\n\"\n}\n\u003c/code\u003e\u003c/pre\u003e\u003c/div\u003e\n\u003cdiv class=\"markdown-heading\" dir=\"auto\"\u003e\u003ch2 tabindex=\"-1\" class=\"heading-element\" dir=\"auto\"\u003e\u003ca name=\"user-content-locations\"\u003e\u003c/a\u003e Marking Locations inside Documents\u003c/h2\u003e\u003ca id=\"user-content--marking-locations-inside-documents\" class=\"anchor\" aria-label=\"Permalink: Marking Locations inside Documents\" href=\"#-marking-locations-inside-documents\"\u003e\u003csvg class=\"octicon octicon-link\" viewBox=\"0 0 16 16\" version=\"1.1\" width=\"16\" height=\"16\" aria-hidden=\"true\"\u003e\u003cpath d=\"m7.775 3.275 1.25-1.25a3.5 3.5 0 1 1 4.95 4.95l-2.5 2.5a3.5 3.5 0 0 1-4.95 0 .751.751 0 0 1 .018-1.042.751.751 0 0 1 1.042-.018 1.998 1.998 0 0 0 2.83 0l2.5-2.5a2.002 2.002 0 0 0-2.83-2.83l-1.25 1.25a.751.751 0 0 1-1.042-.018.751.751 0 0 1-.018-1.042Zm-4.69 9.64a1.998 1.998 0 0 0 2.83 0l1.25-1.25a.751.751 0 0 1 1.042.018.751.751 0 0 1 .018 1.042l-1.25 1.25a3.5 3.5 0 1 1-4.95-4.95l2.5-2.5a3.5 3.5 0 0 1 4.95 0 .751.751 0 0 1-.018 1.042.751.751 0 0 1-1.042.018 1.998 1.998 0 0 0-2.83 0l-2.5 2.5a1.998 1.998 0 0 0 0 2.83Z\"\u003e\u003c/path\u003e\u003c/svg\u003e\u003c/a\u003e\u003c/div\u003e\n\u003cp dir=\"auto\"\u003eDocuments may record their extent on physical pages with the \u003ccode\u003epages\u003c/code\u003e field.\u003c/p\u003e\n\u003cdiv class=\"snippet-clipboard-content notranslate position-relative overflow-auto\" data-snippet-clipboard-copy-content=\" \u0026quot;pages\u0026quot;: [\n {\n \u0026quot;id\u0026quot;: \u0026quot;scheffel_ekkehard_1855/0261\u0026quot;,\n \u0026quot;seq\u0026quot;: 0,\n \u0026quot;width\u0026quot;: 1600,\n \u0026quot;height\u0026quot;: 2525,\n \u0026quot;dpi\u0026quot;: 0,\n \u0026quot;regions\u0026quot;: [\n {\n \u0026quot;start\u0026quot;: 14,\n \u0026quot;length\u0026quot;: 6,\n \u0026quot;coords\u0026quot;: {\n \u0026quot;x\u0026quot;: 100,\n \u0026quot;y\u0026quot;: 195,\n \u0026quot;w\u0026quot;: 117,\n \u0026quot;h\u0026quot;: 47,\n \u0026quot;b\u0026quot;: 47\n }\n },\n {\n \u0026quot;start\u0026quot;: 21,\n \u0026quot;length\u0026quot;: 6,\n \u0026quot;coords\u0026quot;: {\n \u0026quot;x\u0026quot;: 252,\n \u0026quot;y\u0026quot;: 194,\n \u0026quot;w\u0026quot;: 114,\n \u0026quot;h\u0026quot;: 44,\n \u0026quot;b\u0026quot;: 44\n }\n },\n\t\t...\n\t ]\n\t }\n\t ]\"\u003e\u003cpre class=\"notranslate\"\u003e\u003ccode\u003e \"pages\": [\n {\n \"id\": \"scheffel_ekkehard_1855/0261\",\n \"seq\": 0,\n \"width\": 1600,\n \"height\": 2525,\n \"dpi\": 0,\n \"regions\": [\n {\n \"start\": 14,\n \"length\": 6,\n \"coords\": {\n \"x\": 100,\n \"y\": 195,\n \"w\": 117,\n \"h\": 47,\n \"b\": 47\n }\n },\n {\n \"start\": 21,\n \"length\": 6,\n \"coords\": {\n \"x\": 252,\n \"y\": 194,\n \"w\": 114,\n \"h\": 44,\n \"b\": 44\n }\n },\n\t\t...\n\t ]\n\t }\n\t ]\n\u003c/code\u003e\u003c/pre\u003e\u003c/div\u003e\n\u003cp dir=\"auto\"\u003eAlthough, as stated above, JSON records should occupy a single line, we format the data here on several lines for legibility. The \u003ccode\u003estart\u003c/code\u003e and \u003ccode\u003elength\u003c/code\u003e fields of a record in \u003ccode\u003eregions\u003c/code\u003e indicate character offsets into the document \u003ccode\u003etext\u003c/code\u003e field. The \u003ccode\u003epages\u003c/code\u003e field is an array since a document may span several pages. You may specify a field with a different name using the \u003ccode\u003e--pages\u003c/code\u003e option.\u003c/p\u003e\n\u003cp dir=\"auto\"\u003eThe \u003ccode\u003elocs\u003c/code\u003e field (whose name is changeable with the \u003ccode\u003e--locs\u003c/code\u003e option) specifies spans in a text associated with canonical citation schemes, such as books, chapters, and verses in the Bible, books, chapters, and sections in Herodotus, and so on. This field is an array of triples, with fields \u003ccode\u003eloc\u003c/code\u003e, \u003ccode\u003estart\u003c/code\u003e, and \u003ccode\u003elength\u003c/code\u003e. As with the \u003ccode\u003eregions\u003c/code\u003e field on a page, \u003ccode\u003estart\u003c/code\u003e and \u003ccode\u003elength\u003c/code\u003e indicate the spans in the text associated with each citation stored in the \u003ccode\u003eloc\u003c/code\u003e field. Text passages in cluster and aligned-line output then contain a \u003ccode\u003elocs\u003c/code\u003e field to indicate which citations overlap with that passage.\u003c/p\u003e\n\u003cdiv class=\"markdown-heading\" dir=\"auto\"\u003e\u003ch2 tabindex=\"-1\" class=\"heading-element\" dir=\"auto\"\u003eAcknowledgements\u003c/h2\u003e\u003ca id=\"user-content-acknowledgements\" class=\"anchor\" aria-label=\"Permalink: Acknowledgements\" href=\"#acknowledgements\"\u003e\u003csvg class=\"octicon octicon-link\" viewBox=\"0 0 16 16\" version=\"1.1\" width=\"16\" height=\"16\" aria-hidden=\"true\"\u003e\u003cpath d=\"m7.775 3.275 1.25-1.25a3.5 3.5 0 1 1 4.95 4.95l-2.5 2.5a3.5 3.5 0 0 1-4.95 0 .751.751 0 0 1 .018-1.042.751.751 0 0 1 1.042-.018 1.998 1.998 0 0 0 2.83 0l2.5-2.5a2.002 2.002 0 0 0-2.83-2.83l-1.25 1.25a.751.751 0 0 1-1.042-.018.751.751 0 0 1-.018-1.042Zm-4.69 9.64a1.998 1.998 0 0 0 2.83 0l1.25-1.25a.751.751 0 0 1 1.042.018.751.751 0 0 1 .018 1.042l-1.25 1.25a3.5 3.5 0 1 1-4.95-4.95l2.5-2.5a3.5 3.5 0 0 1 4.95 0 .751.751 0 0 1-.018 1.042.751.751 0 0 1-1.042.018 1.998 1.998 0 0 0-2.83 0l-2.5 2.5a1.998 1.998 0 0 0 0 2.83Z\"\u003e\u003c/path\u003e\u003c/svg\u003e\u003c/a\u003e\u003c/div\u003e\n\u003cp dir=\"auto\"\u003eWe insert the appropriate text in gratitude to our sponsors at the Andrew W. Mellon Foundation and the National Endowment for the Humanities. TODO.\u003c/p\u003e\n\u003cdiv class=\"markdown-heading\" dir=\"auto\"\u003e\u003ch2 tabindex=\"-1\" class=\"heading-element\" dir=\"auto\"\u003eLicense\u003c/h2\u003e\u003ca id=\"user-content-license\" class=\"anchor\" aria-label=\"Permalink: License\" href=\"#license\"\u003e\u003csvg class=\"octicon octicon-link\" viewBox=\"0 0 16 16\" version=\"1.1\" width=\"16\" height=\"16\" aria-hidden=\"true\"\u003e\u003cpath d=\"m7.775 3.275 1.25-1.25a3.5 3.5 0 1 1 4.95 4.95l-2.5 2.5a3.5 3.5 0 0 1-4.95 0 .751.751 0 0 1 .018-1.042.751.751 0 0 1 1.042-.018 1.998 1.998 0 0 0 2.83 0l2.5-2.5a2.002 2.002 0 0 0-2.83-2.83l-1.25 1.25a.751.751 0 0 1-1.042-.018.751.751 0 0 1-.018-1.042Zm-4.69 9.64a1.998 1.998 0 0 0 2.83 0l1.25-1.25a.751.751 0 0 1 1.042.018.751.751 0 0 1 .018 1.042l-1.25 1.25a3.5 3.5 0 1 1-4.95-4.95l2.5-2.5a3.5 3.5 0 0 1 4.95 0 .751.751 0 0 1-.018 1.042.751.751 0 0 1-1.042.018 1.998 1.998 0 0 0-2.83 0l-2.5 2.5a1.998 1.998 0 0 0 0 2.83Z\"\u003e\u003c/path\u003e\u003c/svg\u003e\u003c/a\u003e\u003c/div\u003e\n\u003cp dir=\"auto\"\u003eCopyright © 2012-23 David A. Smith\u003c/p\u003e\n\u003cp dir=\"auto\"\u003eDistributed under the MIT License.\u003c/p\u003e\n\u003c/article\u003e","loaded":true,"timedOut":false,"errorMessage":null,"headerInfo":{"toc":[{"level":1,"text":"passim","anchor":"passim","htmlText":"passim"},{"level":2,"text":"Documentation","anchor":"documentation","htmlText":"Documentation"},{"level":2,"text":"Installation","anchor":"installation","htmlText":"Installation"},{"level":2,"text":"Aligning and Clustering Matching Passage Pairs","anchor":"aligning-and-clustering-matching-passage-pairs","htmlText":"Aligning and Clustering Matching Passage Pairs"},{"level":3,"text":"Structuring the Input","anchor":"structuring-the-input","htmlText":"Structuring the Input"},{"level":3,"text":"Running passim","anchor":"running-passim","htmlText":"Running passim"},{"level":3,"text":"Controlling passim's n-gram filtering","anchor":"controlling-passims-n-gram-filtering","htmlText":"Controlling passim's n-gram filtering"},{"level":3,"text":"Pruning Alignments","anchor":"pruning-alignments","htmlText":"Pruning Alignments"},{"level":3,"text":"passim vs. seriatim","anchor":"passim-vs-seriatim","htmlText":"passim vs. seriatim"},{"level":3,"text":"Producing Aligned Output","anchor":"producing-aligned-output","htmlText":"Producing Aligned Output"},{"level":2,"text":" Marking Locations inside Documents","anchor":"-marking-locations-inside-documents","htmlText":" Marking Locations inside Documents"},{"level":2,"text":"Acknowledgements","anchor":"acknowledgements","htmlText":"Acknowledgements"},{"level":2,"text":"License","anchor":"license","htmlText":"License"}],"siteNavLoginPath":"/login?return_to=https%3A%2F%2Fgithub.com%2Fdasmiq%2Fpassim"}}],"overviewFilesProcessingTime":0}},"appPayload":{"helpUrl":"https://docs.github.com","findFileWorkerPath":"/assets-cdn/worker/find-file-worker-9f8a877aa99f.js","findInFileWorkerPath":"/assets-cdn/worker/find-in-file-worker-96e76d5fdb2c.js","githubDevUrl":null,"enabled_features":{"copilot_workspace":null,"code_nav_ui_events":false,"overview_shared_code_dropdown_button":false,"react_blob_overlay":false,"copilot_conversational_ux_embedding_update":false,"copilot_smell_icebreaker_ux":true,"accessible_code_button":true}}}}</script> <div data-target="react-partial.reactRoot"><style data-styled="true" data-styled-version="5.3.11">.iVEunk{margin-top:16px;margin-bottom:16px;}/*!sc*/ 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3Z"></path></svg></button></div></div></div><div class="Box-sc-g0xbh4-0 vIPPs"><div data-hpc="true"><button hidden="" data-testid="focus-next-element-button" data-hotkey="j"></button><button hidden="" data-testid="focus-previous-element-button" data-hotkey="k"></button><h2 class="sr-only ScreenReaderHeading-module__userSelectNone--vW4Cq prc-Heading-Heading-6CmGO" data-testid="screen-reader-heading" id="folders-and-files">Folders and files</h2><table aria-labelledby="folders-and-files" class="Box-sc-g0xbh4-0 fdROMU"><thead class="Box-sc-g0xbh4-0 jGKpsv"><tr class="Box-sc-g0xbh4-0 jdgHnn"><th colSpan="2" class="Box-sc-g0xbh4-0 bQivRW"><span class="text-bold">Name</span></th><th colSpan="1" class="Box-sc-g0xbh4-0 ldkMIO"><span class="text-bold">Name</span></th><th class="hide-sm"><div title="Last commit message" class="Truncate__StyledTruncate-sc-23o1d2-0 liVpTx width-fit"><span class="text-bold">Last commit message</span></div></th><th colSpan="1" class="Box-sc-g0xbh4-0 jMbWeI"><div 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fgColor-default" data-loading="false" data-size="small" data-variant="invisible" aria-describedby=":Raqj8pab:-loading-announcement"><span data-component="buttonContent" data-align="center" class="prc-Button-ButtonContent-HKbr-"><span data-component="leadingVisual" class="prc-Button-Visual-2epfX prc-Button-VisualWrap-Db-eB"><svg aria-hidden="true" focusable="false" class="octicon octicon-history" viewBox="0 0 16 16" width="16" height="16" fill="currentColor" style="display:inline-block;user-select:none;vertical-align:text-bottom;overflow:visible"><path d="m.427 1.927 1.215 1.215a8.002 8.002 0 1 1-1.6 5.685.75.75 0 1 1 1.493-.154 6.5 6.5 0 1 0 1.18-4.458l1.358 1.358A.25.25 0 0 1 3.896 6H.25A.25.25 0 0 1 0 5.75V2.104a.25.25 0 0 1 .427-.177ZM7.75 4a.75.75 0 0 1 .75.75v2.992l2.028.812a.75.75 0 0 1-.557 1.392l-2.5-1A.751.751 0 0 1 7 8.25v-3.5A.75.75 0 0 1 7.75 4Z"></path></svg></span><span data-component="text" class="prc-Button-Label-pTQ3x"><span class="fgColor-default">736 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1.5h-8.5a.75.75 0 0 1 0-1.5Zm0 5h8.5a.75.75 0 0 1 0 1.5h-8.5a.75.75 0 0 1 0-1.5Zm0 5h8.5a.75.75 0 0 1 0 1.5h-8.5a.75.75 0 0 1 0-1.5ZM2 14a1 1 0 1 1 0-2 1 1 0 0 1 0 2Zm1-6a1 1 0 1 1-2 0 1 1 0 0 1 2 0ZM2 4a1 1 0 1 1 0-2 1 1 0 0 1 0 2Z"></path></svg></button></div><div class="Box-sc-g0xbh4-0 QkQOb js-snippet-clipboard-copy-unpositioned undefined" data-hpc="true"><article class="markdown-body entry-content container-lg" itemprop="text"><div class="markdown-heading" dir="auto"><h1 tabindex="-1" class="heading-element" dir="auto">passim</h1><a id="user-content-passim" class="anchor" aria-label="Permalink: passim" href="#passim"><svg class="octicon octicon-link" viewBox="0 0 16 16" version="1.1" width="16" height="16" aria-hidden="true"><path d="m7.775 3.275 1.25-1.25a3.5 3.5 0 1 1 4.95 4.95l-2.5 2.5a3.5 3.5 0 0 1-4.95 0 .751.751 0 0 1 .018-1.042.751.751 0 0 1 1.042-.018 1.998 1.998 0 0 0 2.83 0l2.5-2.5a2.002 2.002 0 0 0-2.83-2.83l-1.25 1.25a.751.751 0 0 1-1.042-.018.751.751 0 0 1-.018-1.042Zm-4.69 9.64a1.998 1.998 0 0 0 2.83 0l1.25-1.25a.751.751 0 0 1 1.042.018.751.751 0 0 1 .018 1.042l-1.25 1.25a3.5 3.5 0 1 1-4.95-4.95l2.5-2.5a3.5 3.5 0 0 1 4.95 0 .751.751 0 0 1-.018 1.042.751.751 0 0 1-1.042.018 1.998 1.998 0 0 0-2.83 0l-2.5 2.5a1.998 1.998 0 0 0 0 2.83Z"></path></svg></a></div> <p dir="auto">This project implements algorithms for detecting and aligning similar passages in text. It can be run either in query mode, to find quoted passages from a reference text, or all-pairs mode, to find all pairs of passages within longer documents with substantial alignments.</p> <div class="markdown-heading" dir="auto"><h2 tabindex="-1" class="heading-element" dir="auto">Documentation</h2><a id="user-content-documentation" class="anchor" aria-label="Permalink: Documentation" href="#documentation"><svg class="octicon octicon-link" viewBox="0 0 16 16" version="1.1" width="16" height="16" aria-hidden="true"><path d="m7.775 3.275 1.25-1.25a3.5 3.5 0 1 1 4.95 4.95l-2.5 2.5a3.5 3.5 0 0 1-4.95 0 .751.751 0 0 1 .018-1.042.751.751 0 0 1 1.042-.018 1.998 1.998 0 0 0 2.83 0l2.5-2.5a2.002 2.002 0 0 0-2.83-2.83l-1.25 1.25a.751.751 0 0 1-1.042-.018.751.751 0 0 1-.018-1.042Zm-4.69 9.64a1.998 1.998 0 0 0 2.83 0l1.25-1.25a.751.751 0 0 1 1.042.018.751.751 0 0 1 .018 1.042l-1.25 1.25a3.5 3.5 0 1 1-4.95-4.95l2.5-2.5a3.5 3.5 0 0 1 4.95 0 .751.751 0 0 1-.018 1.042.751.751 0 0 1-1.042.018 1.998 1.998 0 0 0-2.83 0l-2.5 2.5a1.998 1.998 0 0 0 0 2.83Z"></path></svg></a></div> <p dir="auto">Besides the documentation in this README file, you might find it helpful to read:</p> <ul dir="auto"> <li><a href="/dasmiq/passim/blob/main/docs/passim_quickstart.ipynb">Getting Started with <code>passim</code></a>, an IPython notebook that walks through installation and basic usage; and</li> <li><a href="https://github.com/dasmiq/ph-submissions/blob/passim2-replace/en/published/originals/detecting-text-reuse-with-passim.md">Detecting Text Reuse with Passim 2.0</a>, an updated version of the tutorial on <a href="https://programminghistorian.org/" rel="nofollow"><em>Programming Historian</em></a>.</li> </ul> <p dir="auto">If you are using the earlier <em>Programming Historian</em> tutorial on passim version 1, see <a href="https://github.com/dasmiq/ph-submissions/blob/passim1-release/en/published/originals/detecting-text-reuse-with-passim.md">this updated version</a> that corrects links to the source code.</p> <div class="markdown-heading" dir="auto"><h2 tabindex="-1" class="heading-element" dir="auto">Installation</h2><a id="user-content-installation" class="anchor" aria-label="Permalink: Installation" href="#installation"><svg class="octicon octicon-link" viewBox="0 0 16 16" version="1.1" width="16" height="16" aria-hidden="true"><path d="m7.775 3.275 1.25-1.25a3.5 3.5 0 1 1 4.95 4.95l-2.5 2.5a3.5 3.5 0 0 1-4.95 0 .751.751 0 0 1 .018-1.042.751.751 0 0 1 1.042-.018 1.998 1.998 0 0 0 2.83 0l2.5-2.5a2.002 2.002 0 0 0-2.83-2.83l-1.25 1.25a.751.751 0 0 1-1.042-.018.751.751 0 0 1-.018-1.042Zm-4.69 9.64a1.998 1.998 0 0 0 2.83 0l1.25-1.25a.751.751 0 0 1 1.042.018.751.751 0 0 1 .018 1.042l-1.25 1.25a3.5 3.5 0 1 1-4.95-4.95l2.5-2.5a3.5 3.5 0 0 1 4.95 0 .751.751 0 0 1-.018 1.042.751.751 0 0 1-1.042.018 1.998 1.998 0 0 0-2.83 0l-2.5 2.5a1.998 1.998 0 0 0 0 2.83Z"></path></svg></a></div> <p dir="auto">Passim relies on <a href="http://spark.apache.org" rel="nofollow">Apache Spark</a> to manage parallel computations, either on a single machine or a cluster. Spark, in turn, requires Java to run with the <code>java</code> command. In its default configuration, it also expects Python 3 to be runnable with the <code>python</code> command. There are ways to configure your system differently using various environment variables, but having these defaults will make your life easier.</p> <p dir="auto">Once you have java and python installed, the easiest way to install the latest version of passim is with the <code>pip</code> command. Since passim requires Python 3, you may need to use <code>pip3</code> on some systems.</p> <p dir="auto">The easiest way to install Passim is to have <code>pip</code> download from github directly:</p> <div class="snippet-clipboard-content notranslate position-relative overflow-auto" data-snippet-clipboard-copy-content="$ pip install git+https://github.com/dasmiq/passim.git"><pre class="notranslate"><code>$ pip install git+https://github.com/dasmiq/passim.git </code></pre></div> <p dir="auto">If pip complains that you don't have access to install python packages on the system, you can use the <code>--user</code> option to install in your home directory, like so:</p> <div class="snippet-clipboard-content notranslate position-relative overflow-auto" data-snippet-clipboard-copy-content="$ pip install --user git+https://github.com/dasmiq/passim.git"><pre class="notranslate"><code>$ pip install --user git+https://github.com/dasmiq/passim.git </code></pre></div> <p dir="auto">If you've cloned the source code, you can run</p> <div class="snippet-clipboard-content notranslate position-relative overflow-auto" data-snippet-clipboard-copy-content="pip install ."><pre class="notranslate"><code>pip install . </code></pre></div> <p dir="auto">with or without the <code>--user</code> option, as needed.</p> <p dir="auto">It is possible that <code>pip</code> might install passim in a location not in your <code>PATH</code>. If so, run <code>pip show --files passim</code> to see where it is; you can then modify your <code>PATH</code> to find it.</p> <p dir="auto">Since passim defaults to the JSON format for input and output, it is convenient to have the <a href="http://stedolan.github.io/jq/" rel="nofollow">command-line JSON processor jq</a> installed.</p> <div class="markdown-heading" dir="auto"><h2 tabindex="-1" class="heading-element" dir="auto">Aligning and Clustering Matching Passage Pairs</h2><a id="user-content-aligning-and-clustering-matching-passage-pairs" class="anchor" aria-label="Permalink: Aligning and Clustering Matching Passage Pairs" href="#aligning-and-clustering-matching-passage-pairs"><svg class="octicon octicon-link" viewBox="0 0 16 16" version="1.1" width="16" height="16" aria-hidden="true"><path d="m7.775 3.275 1.25-1.25a3.5 3.5 0 1 1 4.95 4.95l-2.5 2.5a3.5 3.5 0 0 1-4.95 0 .751.751 0 0 1 .018-1.042.751.751 0 0 1 1.042-.018 1.998 1.998 0 0 0 2.83 0l2.5-2.5a2.002 2.002 0 0 0-2.83-2.83l-1.25 1.25a.751.751 0 0 1-1.042-.018.751.751 0 0 1-.018-1.042Zm-4.69 9.64a1.998 1.998 0 0 0 2.83 0l1.25-1.25a.751.751 0 0 1 1.042.018.751.751 0 0 1 .018 1.042l-1.25 1.25a3.5 3.5 0 1 1-4.95-4.95l2.5-2.5a3.5 3.5 0 0 1 4.95 0 .751.751 0 0 1-.018 1.042.751.751 0 0 1-1.042.018 1.998 1.998 0 0 0-2.83 0l-2.5 2.5a1.998 1.998 0 0 0 0 2.83Z"></path></svg></a></div> <div class="markdown-heading" dir="auto"><h3 tabindex="-1" class="heading-element" dir="auto">Structuring the Input</h3><a id="user-content-structuring-the-input" class="anchor" aria-label="Permalink: Structuring the Input" href="#structuring-the-input"><svg class="octicon octicon-link" viewBox="0 0 16 16" version="1.1" width="16" height="16" aria-hidden="true"><path d="m7.775 3.275 1.25-1.25a3.5 3.5 0 1 1 4.95 4.95l-2.5 2.5a3.5 3.5 0 0 1-4.95 0 .751.751 0 0 1 .018-1.042.751.751 0 0 1 1.042-.018 1.998 1.998 0 0 0 2.83 0l2.5-2.5a2.002 2.002 0 0 0-2.83-2.83l-1.25 1.25a.751.751 0 0 1-1.042-.018.751.751 0 0 1-.018-1.042Zm-4.69 9.64a1.998 1.998 0 0 0 2.83 0l1.25-1.25a.751.751 0 0 1 1.042.018.751.751 0 0 1 .018 1.042l-1.25 1.25a3.5 3.5 0 1 1-4.95-4.95l2.5-2.5a3.5 3.5 0 0 1 4.95 0 .751.751 0 0 1-.018 1.042.751.751 0 0 1-1.042.018 1.998 1.998 0 0 0-2.83 0l-2.5 2.5a1.998 1.998 0 0 0 0 2.83Z"></path></svg></a></div> <p dir="auto">The input to passim is a set of <em>documents</em>. Depending on the kind of data you have, you might choose documents to be whole books, pages of books, whole issues of newspapers, individual newspaper articles, etc. Minimally, a document consists of an identifier string and a single string of text content.</p> <p dir="auto">For many text reuse detection problems, it is useful to group documents into <em>series</em>. Text reuse within series could then be ignored. We may, for example, be less interested in the masthead and ads that appear week after week in the same newspaper and more interested in articles that propagate from one city's newspapers to another's. In that case, we would declare all issues of the same newspaper—or all articles within those issues—to have the same series. Similarly, we might define documents to be the pages or chapters of a book and series to be whole books.</p> <p dir="auto">The default input format for documents is in a file or set of files containing one JSON record per line, i.e., the <a href="https://jsonlines.org/" rel="nofollow">JSON Lines format</a>. The record for a single document with the required <code>id</code> and <code>text</code> fields, as well as a <code>series</code> field, would look like:</p> <div class="snippet-clipboard-content notranslate position-relative overflow-auto" data-snippet-clipboard-copy-content="{"id": "d1", "series": "abc", "text": "This is text."}"><pre class="notranslate"><code>{"id": "d1", "series": "abc", "text": "This is text."} </code></pre></div> <p dir="auto">Note that this must be a single line in the file. This JSON record format has two important differences from general-purpose JSON files. First, the JSON records for each document are concatenated together, rather than being nested inside a top-level array. Second, each record must be contained on one line, rather than extending over multiple lines until the closing curly brace. These restrictions make it more efficient to process in parallel large numbers of documents spread across multiple files.</p> <p dir="auto">In addition to the fields <code>id</code>, <code>text</code>, and <code>series</code>, other metadata included in the record for each document will be passed through into the output.</p> <p dir="auto">Natural language text is redundant, and adding markup and JSON field names increases the redundancy. Spark and passim support several compression schemes. For relatively small files, gzip is adequate; however, when the input files are large enough that they do not comfortably fit in memory, bzip2 is preferable since programs can split these files into blocks before decompressing.</p> <div class="markdown-heading" dir="auto"><h3 tabindex="-1" class="heading-element" dir="auto">Running passim</h3><a id="user-content-running-passim" class="anchor" aria-label="Permalink: Running passim" href="#running-passim"><svg class="octicon octicon-link" viewBox="0 0 16 16" version="1.1" width="16" height="16" aria-hidden="true"><path d="m7.775 3.275 1.25-1.25a3.5 3.5 0 1 1 4.95 4.95l-2.5 2.5a3.5 3.5 0 0 1-4.95 0 .751.751 0 0 1 .018-1.042.751.751 0 0 1 1.042-.018 1.998 1.998 0 0 0 2.83 0l2.5-2.5a2.002 2.002 0 0 0-2.83-2.83l-1.25 1.25a.751.751 0 0 1-1.042-.018.751.751 0 0 1-.018-1.042Zm-4.69 9.64a1.998 1.998 0 0 0 2.83 0l1.25-1.25a.751.751 0 0 1 1.042.018.751.751 0 0 1 .018 1.042l-1.25 1.25a3.5 3.5 0 1 1-4.95-4.95l2.5-2.5a3.5 3.5 0 0 1 4.95 0 .751.751 0 0 1-.018 1.042.751.751 0 0 1-1.042.018 1.998 1.998 0 0 0-2.83 0l-2.5 2.5a1.998 1.998 0 0 0 0 2.83Z"></path></svg></a></div> <p dir="auto">The simplest invocation contains list of inputs and a directory name for the output.</p> <div class="snippet-clipboard-content notranslate position-relative overflow-auto" data-snippet-clipboard-copy-content="$ passim input.json output"><pre class="notranslate"><code>$ passim input.json output </code></pre></div> <p dir="auto">Following Spark conventions, input may be a single file, a single directory full of files, or a <code>*</code> wildcard (glob) expression. Multiple input paths should be separated by commas. Files may also be compressed.</p> <div class="snippet-clipboard-content notranslate position-relative overflow-auto" data-snippet-clipboard-copy-content="$ passim "{input.json,directory-of-json-files,some*.json.bz2}" output"><pre class="notranslate"><code>$ passim "{input.json,directory-of-json-files,some*.json.bz2}" output </code></pre></div> <p dir="auto">Output is written to a directory that, on completion, will contain an <code>out.json</code> directory with <code>part-*</code> files rather than a single file. This allows multiple workers to write it efficiently (and read it back in) in parallel.</p> <p dir="auto">The output contains one JSON record for each reused passage. Each record echoes the fields in the JSON input and adds the following extra fields to describe the clustered passages:</p> <markdown-accessiblity-table><table> <thead> <tr> <th>Field</th> <th>Description</th> </tr> </thead> <tbody> <tr> <td><code>cluster</code></td> <td>unique identifier for each cluster</td> </tr> <tr> <td><code>size</code></td> <td>number of passages in each cluster</td> </tr> <tr> <td><code>begin</code></td> <td>character offset into the document where the reused passage begins</td> </tr> <tr> <td><code>end</code></td> <td>character offset into the document where the reused passage ends</td> </tr> <tr> <td><code>uid</code></td> <td>unique internal ID for each document, used for debugging</td> </tr> <tr> <td><code>src</code></td> <td>preceding passage in the cluster inferred to be the source of this passage</td> </tr> <tr> <td><code>pboiler</code></td> <td>proportion of links in the cluster among texts from the same series</td> </tr> </tbody> </table></markdown-accessiblity-table> <p dir="auto">In addition, <code>pages</code>, <code>regions</code>, and <code>locs</code> include information about locations in the underlying text of the reused passage. See <a href="#locations">Marking Locations inside Documents</a> below.</p> <p dir="auto">The default input and output format is JSON. Use the <code>--input-format parquet</code> and <code>--output-format parquet</code> to use the compressed binary Parquet format, which can speed up later processing.</p> <p dir="auto">If, in addition to the clusters, you want to output pairwise alignments between all matching passages, invoke passim with the <code>--pairwise</code> flag. These alignments will be in <code>align.json</code> or <code>align.parquet</code>, depending on which output format you choose.</p> <p dir="auto">Use the <code>--help</code> option to see a full list of options.</p> <p dir="auto">Pass parameters to the underlying Spark processes using the <code>SPARK_SUBMIT_ARGS</code> environment variable. For example, to run passim on a local machine with 10 cores and 200GB of memory, run the following command:</p> <div class="snippet-clipboard-content notranslate position-relative overflow-auto" data-snippet-clipboard-copy-content="$ SPARK_SUBMIT_ARGS='--master local[10] --driver-memory 200G --executor-memory 200G' passim input.json output"><pre class="notranslate"><code>$ SPARK_SUBMIT_ARGS='--master local[10] --driver-memory 200G --executor-memory 200G' passim input.json output </code></pre></div> <p dir="auto">See the <a href="https://spark.apache.org/docs/latest/index.html" rel="nofollow">Spark documentation</a> for further configuration options.</p> <div class="markdown-heading" dir="auto"><h3 tabindex="-1" class="heading-element" dir="auto">Controlling passim's n-gram filtering</h3><a id="user-content-controlling-passims-n-gram-filtering" class="anchor" aria-label="Permalink: Controlling passim's n-gram filtering" href="#controlling-passims-n-gram-filtering"><svg class="octicon octicon-link" viewBox="0 0 16 16" version="1.1" width="16" height="16" aria-hidden="true"><path d="m7.775 3.275 1.25-1.25a3.5 3.5 0 1 1 4.95 4.95l-2.5 2.5a3.5 3.5 0 0 1-4.95 0 .751.751 0 0 1 .018-1.042.751.751 0 0 1 1.042-.018 1.998 1.998 0 0 0 2.83 0l2.5-2.5a2.002 2.002 0 0 0-2.83-2.83l-1.25 1.25a.751.751 0 0 1-1.042-.018.751.751 0 0 1-.018-1.042Zm-4.69 9.64a1.998 1.998 0 0 0 2.83 0l1.25-1.25a.751.751 0 0 1 1.042.018.751.751 0 0 1 .018 1.042l-1.25 1.25a3.5 3.5 0 1 1-4.95-4.95l2.5-2.5a3.5 3.5 0 0 1 4.95 0 .751.751 0 0 1-.018 1.042.751.751 0 0 1-1.042.018 1.998 1.998 0 0 0-2.83 0l-2.5 2.5a1.998 1.998 0 0 0 0 2.83Z"></path></svg></a></div> <p dir="auto">One of the main goals of passim was to work well with large collections. To do that, passim indexes spans of <em>n</em> input characters (i.e., n-grams) and then selects document pairs for alignment only if they share sufficient n-grams. After these pairs of input documents are selected for alignment, passim runs a full character-level alignment algorithm starting from the matching n-grams to produce the full output alignment.</p> <p dir="auto">By default, passim indexes character n-grams starting at word boundaries in order to find candidate passages to align. If your text is very noisy, you can index other n-grams, starting at the middle of words, with the <code>--floating-ngrams</code> flag. In any case, passim only indexes alphanumeric characters (as determined by python's <code>isalnum</code> function), skipping whitespace, punctuation, and other characters.</p> <p dir="auto">Some useful parameters are:</p> <markdown-accessiblity-table><table> <thead> <tr> <th>Parameter</th> <th>Default value</th> <th>Description</th> </tr> </thead> <tbody> <tr> <td><code>-n</code></td> <td>25</td> <td>Character n-gram order for text-reuse detection</td> </tr> <tr> <td><code>-l</code> or <code>--minDF</code></td> <td>2</td> <td>Minimum document frequency of n-grams indexed.</td> </tr> <tr> <td><code>-u</code> or <code>--maxDF</code></td> <td>100</td> <td>Maximum document frequency of n-grams indexed.</td> </tr> <tr> <td><code>-m</code> or <code>--min-match</code></td> <td>5</td> <td>Minimum number of matching n-grams between two documents.</td> </tr> <tr> <td><code>-a</code> or <code>--min-align</code></td> <td>50</td> <td>Minimum number of characters in aligned passages.</td> </tr> <tr> <td><code>-g</code> or <code>--gap</code></td> <td>600</td> <td>Passages more than this number of characters apart will be aligned separately.</td> </tr> </tbody> </table></markdown-accessiblity-table> <p dir="auto">When selecting values for these parameters, you are managing a precision-recall tradeoff. Shorter n-grams or lower minimum matches might produce more output alignments, but they might be less relevant.</p> <div class="markdown-heading" dir="auto"><h3 tabindex="-1" class="heading-element" dir="auto">Pruning Alignments</h3><a id="user-content-pruning-alignments" class="anchor" aria-label="Permalink: Pruning Alignments" href="#pruning-alignments"><svg class="octicon octicon-link" viewBox="0 0 16 16" version="1.1" width="16" height="16" aria-hidden="true"><path d="m7.775 3.275 1.25-1.25a3.5 3.5 0 1 1 4.95 4.95l-2.5 2.5a3.5 3.5 0 0 1-4.95 0 .751.751 0 0 1 .018-1.042.751.751 0 0 1 1.042-.018 1.998 1.998 0 0 0 2.83 0l2.5-2.5a2.002 2.002 0 0 0-2.83-2.83l-1.25 1.25a.751.751 0 0 1-1.042-.018.751.751 0 0 1-.018-1.042Zm-4.69 9.64a1.998 1.998 0 0 0 2.83 0l1.25-1.25a.751.751 0 0 1 1.042.018.751.751 0 0 1 .018 1.042l-1.25 1.25a3.5 3.5 0 1 1-4.95-4.95l2.5-2.5a3.5 3.5 0 0 1 4.95 0 .751.751 0 0 1-.018 1.042.751.751 0 0 1-1.042.018 1.998 1.998 0 0 0-2.83 0l-2.5 2.5a1.998 1.998 0 0 0 0 2.83Z"></path></svg></a></div> <p dir="auto">The text of documents input to passim is indexed to determine which pairs should be aligned. Often, document metadata can provide additional constraints on which documents should be aligned. If there were no constraints, every pair of documents in the input would be aligned, in both directions. These constraints on alignments are expressed by two arguments to passim: <code>--fields</code> and <code>--filterpairs</code>.</p> <p dir="auto">The <code>--fields</code> argument tells passim which fields in the input records to index when determining which documents to align. Fields has the syntax of SQL <code>FROM</code> clause as implemented by Apache Spark. Multiple fields may be passed by successfive command-line arguments. Use quotes to surround fields definitions containing spaces. In the following example, we ask passim to index the <code>date</code> field as is and to index the <code>series</code> field by hashing it to a 64-bit integer and calling it <code>gid</code>:</p> <div class="snippet-clipboard-content notranslate position-relative overflow-auto" data-snippet-clipboard-copy-content="--fields date 'xxhash64(series) as gid'"><pre class="notranslate"><code>--fields date 'xxhash64(series) as gid' </code></pre></div> <p dir="auto">Since document and series identifiers can be long strings, passim runs more efficiently if they are hashed to long integers by the (builtin) <code>xxhash64</code> function.</p> <p dir="auto">The <code>--filterpairs</code> argument is an SQL expression that specifies which pairs of documents are candidates for comparison. A candidate pair consists of a "source" document, whose field names are identical to those in the input, and a "target" document, whose field names have a "2" appended to them. This is similar to the left- and right-handed sides of a SQL JOIN; in fact, passim is effectively performing a (massively pruned) self-join on the table of input documents.</p> <p dir="auto">As an example, consider aligning only document pairs where the "source" document predates the "target" document by 0 to 30 days. To perform efficient date arithmetic, we use Apache Spark's built-in <code>date</code> function to convert a string <code>date</code> field to an integer:</p> <div class="snippet-clipboard-content notranslate position-relative overflow-auto" data-snippet-clipboard-copy-content="--fields 'date(date) as day' --filterpairs 'day < day2 AND (day2 - day) <= 30 AND uid <> uid2'"><pre class="notranslate"><code>--fields 'date(date) as day' --filterpairs 'day < day2 AND (day2 - day) <= 30 AND uid <> uid2' </code></pre></div> <p dir="auto">Since the dates may be equal, we also include the constraint that the hashed document ids (<code>uid</code>) be different. Had we not done this, the output would also have included alignments of every document with itself. The <code>uid</code> field as a hash of the <code>id</code> field is always available. Note also the SQL inequality operator <code><></code>.</p> <p dir="auto">By default, passim uses <code>--filterpairs uid < uid2</code> to prune comparisons. In other words, passim imposes a total order on all documents based on the arbitrary but easily-comparable hashes of document identifiers.</p> <div class="markdown-heading" dir="auto"><h3 tabindex="-1" class="heading-element" dir="auto">passim vs. seriatim</h3><a id="user-content-passim-vs-seriatim" class="anchor" aria-label="Permalink: passim vs. seriatim" href="#passim-vs-seriatim"><svg class="octicon octicon-link" viewBox="0 0 16 16" version="1.1" width="16" height="16" aria-hidden="true"><path d="m7.775 3.275 1.25-1.25a3.5 3.5 0 1 1 4.95 4.95l-2.5 2.5a3.5 3.5 0 0 1-4.95 0 .751.751 0 0 1 .018-1.042.751.751 0 0 1 1.042-.018 1.998 1.998 0 0 0 2.83 0l2.5-2.5a2.002 2.002 0 0 0-2.83-2.83l-1.25 1.25a.751.751 0 0 1-1.042-.018.751.751 0 0 1-.018-1.042Zm-4.69 9.64a1.998 1.998 0 0 0 2.83 0l1.25-1.25a.751.751 0 0 1 1.042.018.751.751 0 0 1 .018 1.042l-1.25 1.25a3.5 3.5 0 1 1-4.95-4.95l2.5-2.5a3.5 3.5 0 0 1 4.95 0 .751.751 0 0 1-.018 1.042.751.751 0 0 1-1.042.018 1.998 1.998 0 0 0-2.83 0l-2.5 2.5a1.998 1.998 0 0 0 0 2.83Z"></path></svg></a></div> <p dir="auto">As in previous versions, <code>passim</code> aligns pairs of passages that pass the filter criteria specified above. There is now also a top-level <code>seriatim</code> command that, for a given target passage, returns the source passage with the <em>best</em> alignment. This is useful for constructing directed graphs of text reuse. (In fact, <code>passim</code> is now equivalent to invoking <code>seriatim</code> with the <code>--all-pairs</code> option.)</p> <div class="markdown-heading" dir="auto"><h3 tabindex="-1" class="heading-element" dir="auto">Producing Aligned Output</h3><a id="user-content-producing-aligned-output" class="anchor" aria-label="Permalink: Producing Aligned Output" href="#producing-aligned-output"><svg class="octicon octicon-link" viewBox="0 0 16 16" version="1.1" width="16" height="16" aria-hidden="true"><path d="m7.775 3.275 1.25-1.25a3.5 3.5 0 1 1 4.95 4.95l-2.5 2.5a3.5 3.5 0 0 1-4.95 0 .751.751 0 0 1 .018-1.042.751.751 0 0 1 1.042-.018 1.998 1.998 0 0 0 2.83 0l2.5-2.5a2.002 2.002 0 0 0-2.83-2.83l-1.25 1.25a.751.751 0 0 1-1.042-.018.751.751 0 0 1-.018-1.042Zm-4.69 9.64a1.998 1.998 0 0 0 2.83 0l1.25-1.25a.751.751 0 0 1 1.042.018.751.751 0 0 1 .018 1.042l-1.25 1.25a3.5 3.5 0 1 1-4.95-4.95l2.5-2.5a3.5 3.5 0 0 1 4.95 0 .751.751 0 0 1-.018 1.042.751.751 0 0 1-1.042.018 1.998 1.998 0 0 0-2.83 0l-2.5 2.5a1.998 1.998 0 0 0 0 2.83Z"></path></svg></a></div> <p dir="auto">For the purposes of collating related texts or aligning different transcriptions of the same text, one can produce output using the <code>--docwise</code> or <code>--linewise</code> flags. Each output record in <code>out.json</code> or <code>out.parquet</code> will then contain a document or line from the right-hand, "target" text, along with information about corresponding passages in the left-hand, "witness" or "source" text.</p> <p dir="auto">In the case of <code>--docwise</code> output. each output document contains an array of target line records, and each line record contains zero or more passages from the left-hand side that are aligned to that target line. Note that we specify "passages" from the left-hand side because the line breaks in the witness, if any, may not correspond to line breaks in the target texts. Both the target line and witness passage data may contain information about image coordinates, when available.</p> <p dir="auto">For <code>--linewise</code> output, each output document contains a single newline-delimited line from a target document. This line is identified by the input document <code>id</code> and a character offset <code>begin</code> into the input text. The corresponding witness passage is identified with <code>wid</code> and <code>wbegin</code>.</p> <p dir="auto">In both of these output variants, target lines and witness passages are presented in their original textual form and in their aligned form, with hyphens to pad insertions and deletions. An example of a target line aligned to a single witness passage is:</p> <div class="snippet-clipboard-content notranslate position-relative overflow-auto" data-snippet-clipboard-copy-content="{ "id": "scheffel_ekkehard_1855#f0261z751", "begin": 721, "text": "Grammatik iſt ein hohes Weib, anders erſcheint ſie Holzhackern, an-\n", "wid": "scheffel_ekkehard_1855/0261", "wbegin": 739, "wtext": "Grammatik iſt ein hohes Weib, anders erſcheint ſie HolzhaFern , an=\n", "talg": "Grammatik iſt ein hohes Weib, anders erſcheint ſie Holzhackern-, an‐\n", "walg": "Grammatik iſt ein hohes Weib, anders erſcheint ſie Holzha-Fern , an=\n" }"><pre class="notranslate"><code>{ "id": "scheffel_ekkehard_1855#f0261z751", "begin": 721, "text": "Grammatik iſt ein hohes Weib, anders erſcheint ſie Holzhackern, an-\n", "wid": "scheffel_ekkehard_1855/0261", "wbegin": 739, "wtext": "Grammatik iſt ein hohes Weib, anders erſcheint ſie HolzhaFern , an=\n", "talg": "Grammatik iſt ein hohes Weib, anders erſcheint ſie Holzhackern-, an‐\n", "walg": "Grammatik iſt ein hohes Weib, anders erſcheint ſie Holzha-Fern , an=\n" } </code></pre></div> <div class="markdown-heading" dir="auto"><h2 tabindex="-1" class="heading-element" dir="auto"><a name="user-content-locations"></a> Marking Locations inside Documents</h2><a id="user-content--marking-locations-inside-documents" class="anchor" aria-label="Permalink: Marking Locations inside Documents" href="#-marking-locations-inside-documents"><svg class="octicon octicon-link" viewBox="0 0 16 16" version="1.1" width="16" height="16" aria-hidden="true"><path d="m7.775 3.275 1.25-1.25a3.5 3.5 0 1 1 4.95 4.95l-2.5 2.5a3.5 3.5 0 0 1-4.95 0 .751.751 0 0 1 .018-1.042.751.751 0 0 1 1.042-.018 1.998 1.998 0 0 0 2.83 0l2.5-2.5a2.002 2.002 0 0 0-2.83-2.83l-1.25 1.25a.751.751 0 0 1-1.042-.018.751.751 0 0 1-.018-1.042Zm-4.69 9.64a1.998 1.998 0 0 0 2.83 0l1.25-1.25a.751.751 0 0 1 1.042.018.751.751 0 0 1 .018 1.042l-1.25 1.25a3.5 3.5 0 1 1-4.95-4.95l2.5-2.5a3.5 3.5 0 0 1 4.95 0 .751.751 0 0 1-.018 1.042.751.751 0 0 1-1.042.018 1.998 1.998 0 0 0-2.83 0l-2.5 2.5a1.998 1.998 0 0 0 0 2.83Z"></path></svg></a></div> <p dir="auto">Documents may record their extent on physical pages with the <code>pages</code> field.</p> <div class="snippet-clipboard-content notranslate position-relative overflow-auto" data-snippet-clipboard-copy-content=" "pages": [ { "id": "scheffel_ekkehard_1855/0261", "seq": 0, "width": 1600, "height": 2525, "dpi": 0, "regions": [ { "start": 14, "length": 6, "coords": { "x": 100, "y": 195, "w": 117, "h": 47, "b": 47 } }, { "start": 21, "length": 6, "coords": { "x": 252, "y": 194, "w": 114, "h": 44, "b": 44 } }, ... ] } ]"><pre class="notranslate"><code> "pages": [ { "id": "scheffel_ekkehard_1855/0261", "seq": 0, "width": 1600, "height": 2525, "dpi": 0, "regions": [ { "start": 14, "length": 6, "coords": { "x": 100, "y": 195, "w": 117, "h": 47, "b": 47 } }, { "start": 21, "length": 6, "coords": { "x": 252, "y": 194, "w": 114, "h": 44, "b": 44 } }, ... ] } ] </code></pre></div> <p dir="auto">Although, as stated above, JSON records should occupy a single line, we format the data here on several lines for legibility. The <code>start</code> and <code>length</code> fields of a record in <code>regions</code> indicate character offsets into the document <code>text</code> field. The <code>pages</code> field is an array since a document may span several pages. You may specify a field with a different name using the <code>--pages</code> option.</p> <p dir="auto">The <code>locs</code> field (whose name is changeable with the <code>--locs</code> option) specifies spans in a text associated with canonical citation schemes, such as books, chapters, and verses in the Bible, books, chapters, and sections in Herodotus, and so on. This field is an array of triples, with fields <code>loc</code>, <code>start</code>, and <code>length</code>. As with the <code>regions</code> field on a page, <code>start</code> and <code>length</code> indicate the spans in the text associated with each citation stored in the <code>loc</code> field. Text passages in cluster and aligned-line output then contain a <code>locs</code> field to indicate which citations overlap with that passage.</p> <div class="markdown-heading" dir="auto"><h2 tabindex="-1" class="heading-element" dir="auto">Acknowledgements</h2><a id="user-content-acknowledgements" class="anchor" aria-label="Permalink: Acknowledgements" href="#acknowledgements"><svg class="octicon octicon-link" viewBox="0 0 16 16" version="1.1" width="16" height="16" aria-hidden="true"><path d="m7.775 3.275 1.25-1.25a3.5 3.5 0 1 1 4.95 4.95l-2.5 2.5a3.5 3.5 0 0 1-4.95 0 .751.751 0 0 1 .018-1.042.751.751 0 0 1 1.042-.018 1.998 1.998 0 0 0 2.83 0l2.5-2.5a2.002 2.002 0 0 0-2.83-2.83l-1.25 1.25a.751.751 0 0 1-1.042-.018.751.751 0 0 1-.018-1.042Zm-4.69 9.64a1.998 1.998 0 0 0 2.83 0l1.25-1.25a.751.751 0 0 1 1.042.018.751.751 0 0 1 .018 1.042l-1.25 1.25a3.5 3.5 0 1 1-4.95-4.95l2.5-2.5a3.5 3.5 0 0 1 4.95 0 .751.751 0 0 1-.018 1.042.751.751 0 0 1-1.042.018 1.998 1.998 0 0 0-2.83 0l-2.5 2.5a1.998 1.998 0 0 0 0 2.83Z"></path></svg></a></div> <p dir="auto">We insert the appropriate text in gratitude to our sponsors at the Andrew W. Mellon Foundation and the National Endowment for the Humanities. TODO.</p> <div class="markdown-heading" dir="auto"><h2 tabindex="-1" class="heading-element" dir="auto">License</h2><a id="user-content-license" class="anchor" aria-label="Permalink: License" href="#license"><svg class="octicon octicon-link" viewBox="0 0 16 16" version="1.1" width="16" height="16" aria-hidden="true"><path d="m7.775 3.275 1.25-1.25a3.5 3.5 0 1 1 4.95 4.95l-2.5 2.5a3.5 3.5 0 0 1-4.95 0 .751.751 0 0 1 .018-1.042.751.751 0 0 1 1.042-.018 1.998 1.998 0 0 0 2.83 0l2.5-2.5a2.002 2.002 0 0 0-2.83-2.83l-1.25 1.25a.751.751 0 0 1-1.042-.018.751.751 0 0 1-.018-1.042Zm-4.69 9.64a1.998 1.998 0 0 0 2.83 0l1.25-1.25a.751.751 0 0 1 1.042.018.751.751 0 0 1 .018 1.042l-1.25 1.25a3.5 3.5 0 1 1-4.95-4.95l2.5-2.5a3.5 3.5 0 0 1 4.95 0 .751.751 0 0 1-.018 1.042.751.751 0 0 1-1.042.018 1.998 1.998 0 0 0-2.83 0l-2.5 2.5a1.998 1.998 0 0 0 0 2.83Z"></path></svg></a></div> <p dir="auto">Copyright © 2012-23 David A. Smith</p> <p dir="auto">Distributed under the MIT License.</p> </article></div></div></div></div></div> <!-- --> <!-- --> <script type="application/json" id="__PRIMER_DATA_:R0:__">{"resolvedServerColorMode":"day"}</script></div> </react-partial> <input type="hidden" data-csrf="true" value="HN1Fk78E9gcZDRgzGA8jBi4v/o2B/NIMLtyAOyiQjyAbz+K+GQ9GuzCf8rlQ/X2hlZciJir9v1l0LTHRxzc32Q==" /> </div> <div data-view-component="true" class="Layout-sidebar"> <div class="BorderGrid about-margin" data-pjax> <div class="BorderGrid-row"> <div class="BorderGrid-cell"> <div class="hide-sm hide-md"> <h2 class="mb-3 h4">About</h2> <p class="f4 my-3"> Detect and align similar passages </p> <h3 class="sr-only">Resources</h3> <div class="mt-2"> <a class="Link--muted" data-analytics-event="{"category":"Repository Overview","action":"click","label":"location:sidebar;file:readme"}" href="#readme-ov-file"> <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" 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<strong>22</strong> watching</a> </div> <h3 class="sr-only">Forks</h3> <div class="mt-2"> <a href="/dasmiq/passim/forks" data-view-component="true" class="Link Link--muted"><svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-repo-forked mr-2"> <path d="M5 5.372v.878c0 .414.336.75.75.75h4.5a.75.75 0 0 0 .75-.75v-.878a2.25 2.25 0 1 1 1.5 0v.878a2.25 2.25 0 0 1-2.25 2.25h-1.5v2.128a2.251 2.251 0 1 1-1.5 0V8.5h-1.5A2.25 2.25 0 0 1 3.5 6.25v-.878a2.25 2.25 0 1 1 1.5 0ZM5 3.25a.75.75 0 1 0-1.5 0 .75.75 0 0 0 1.5 0Zm6.75.75a.75.75 0 1 0 0-1.5.75.75 0 0 0 0 1.5Zm-3 8.75a.75.75 0 1 0-1.5 0 .75.75 0 0 0 1.5 0Z"></path> </svg> <strong>15</strong> forks</a> </div> <div class="mt-2"> <a class="Link--muted" href="/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2Fdasmiq%2Fpassim&report=dasmiq+%28user%29"> Report repository </a> </div> </div> </div> </div> <div class="BorderGrid-row"> <div 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data-view-component="true" class="octicon octicon-copy js-clipboard-copy-icon m-2"> <path d="M0 6.75C0 5.784.784 5 1.75 5h1.5a.75.75 0 0 1 0 1.5h-1.5a.25.25 0 0 0-.25.25v7.5c0 .138.112.25.25.25h7.5a.25.25 0 0 0 .25-.25v-1.5a.75.75 0 0 1 1.5 0v1.5A1.75 1.75 0 0 1 9.25 16h-7.5A1.75 1.75 0 0 1 0 14.25Z"></path><path d="M5 1.75C5 .784 5.784 0 6.75 0h7.5C15.216 0 16 .784 16 1.75v7.5A1.75 1.75 0 0 1 14.25 11h-7.5A1.75 1.75 0 0 1 5 9.25Zm1.75-.25a.25.25 0 0 0-.25.25v7.5c0 .138.112.25.25.25h7.5a.25.25 0 0 0 .25-.25v-7.5a.25.25 0 0 0-.25-.25Z"></path> </svg> <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-check js-clipboard-check-icon color-fg-success d-none m-2"> <path d="M13.78 4.22a.75.75 0 0 1 0 1.06l-7.25 7.25a.75.75 0 0 1-1.06 0L2.22 9.28a.751.751 0 0 1 .018-1.042.751.751 0 0 1 1.042-.018L6 10.94l6.72-6.72a.75.75 0 0 1 1.06 0Z"></path> </svg> </clipboard-copy> </div> </template> <template id="snippet-clipboard-copy-button-unpositioned"> <div class="zeroclipboard-container"> <clipboard-copy aria-label="Copy" class="ClipboardButton btn btn-invisible js-clipboard-copy m-2 p-0 d-flex flex-justify-center flex-items-center" data-copy-feedback="Copied!" data-tooltip-direction="w"> <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-copy js-clipboard-copy-icon"> <path d="M0 6.75C0 5.784.784 5 1.75 5h1.5a.75.75 0 0 1 0 1.5h-1.5a.25.25 0 0 0-.25.25v7.5c0 .138.112.25.25.25h7.5a.25.25 0 0 0 .25-.25v-1.5a.75.75 0 0 1 1.5 0v1.5A1.75 1.75 0 0 1 9.25 16h-7.5A1.75 1.75 0 0 1 0 14.25Z"></path><path d="M5 1.75C5 .784 5.784 0 6.75 0h7.5C15.216 0 16 .784 16 1.75v7.5A1.75 1.75 0 0 1 14.25 11h-7.5A1.75 1.75 0 0 1 5 9.25Zm1.75-.25a.25.25 0 0 0-.25.25v7.5c0 .138.112.25.25.25h7.5a.25.25 0 0 0 .25-.25v-7.5a.25.25 0 0 0-.25-.25Z"></path> </svg> <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-check js-clipboard-check-icon color-fg-success d-none"> <path d="M13.78 4.22a.75.75 0 0 1 0 1.06l-7.25 7.25a.75.75 0 0 1-1.06 0L2.22 9.28a.751.751 0 0 1 .018-1.042.751.751 0 0 1 1.042-.018L6 10.94l6.72-6.72a.75.75 0 0 1 1.06 0Z"></path> </svg> </clipboard-copy> </div> </template> </div> <div id="js-global-screen-reader-notice" class="sr-only mt-n1" aria-live="polite" aria-atomic="true" ></div> <div id="js-global-screen-reader-notice-assertive" class="sr-only mt-n1" aria-live="assertive" aria-atomic="true"></div> </body> </html>