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Wednesday 25th May: 10:30- 12:00 Registration 12:00 – 12:10 Opening 12:10 – 12:40 Invited Lecture (IL) 1: Hao Yan “Designer Nucleic Acid Architectures for Programmable Self-assembly”, Arizona State University, USA 12:40 […]"/> <meta property="og:url" content="https://www.fdn2022.com/program/"/> <meta property="og:site_name" content="FDN2022"/> <meta property="article:modified_time" content="2022-05-25T05:09:11+00:00"/> <meta name="twitter:card" content="summary"/> <meta name="twitter:label1" content="Est. reading time"/> <meta name="twitter:data1" content="8 minutes"/> <script type="application/ld+json" class="yoast-schema-graph">{"@context":"https://schema.org","@graph":[{"@type":"WebSite","@id":"https://www.fdn2022.com/#website","url":"https://www.fdn2022.com/","name":"FDN2022 Functional DNA Nanotechnology Workshop 2022","description":"5th Functional DNA Nanotechnology Workshop, Rome 25-27 May 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class="czr-hot-crumble container page-breadcrumbs" role="navigation"> <div class="row"> <nav class="breadcrumbs col-12"><span class="trail-begin"><a href="/" title="FDN2022" rel="home" class="trail-begin">Home</a></span> <span class="sep">»</span> <span class="trail-end">Program</span></nav> </div> </div> <div class="container" role="main"> <div class="flex-row row column-content-wrapper"> <div id="content" class="col-12 article-container"> <article id="page-104" class="post-104 page type-page status-publish czr-hentry"> <header class="entry-header "> <div class="entry-header-inner"> <h1 class="entry-title">Program</h1> </div> </header> <div class="post-entry tc-content-inner"> <section class="post-content entry-content "> <div class="czr-wp-the-content"> <p>Below is reported the final program. The book of abstract of the workshop can be found at this link (<a href="../wp-content/uploads/2022/05/Book-of-Abstract_FDN2022.pdf" target="_blank" rel="noopener noreferrer">here</a>).</p> <p> </p> <p><strong>Wednesday 25th May:</strong></p> <p>10:30- 12:00 <strong>Registration </strong></p> <p>12:00 - 12:10 <strong>Opening</strong></p> <p>12:10 - 12:40 <strong>Invited Lecture (IL) 1</strong>: Hao Yan “Designer Nucleic Acid Architectures for Programmable Self-assembly”, Arizona State University, USA</p> <p>12:40 - 12:55 <strong>O1</strong>: Enzo Kopperger “Engineering Electrically Driven DNA-Based Mechanisms” Technical University of Munich, Germany</p> <p>12:55 - 13:10 <strong>O2</strong>: Anton Kuzyk, “DNA-origami-based plasmonic assemblies with tailored stimuli and optical responses”, Aalto University, Finland</p> <p>13:10 - 13:25 <strong>O3</strong>: Minke A.D. Nijenhuis, “Folding dsDNA using Triplex Forming Oligonucleotides”, Aarhus University, Denmark</p> <p>13:25 - 14:25 <strong>Refreshments + poster session</strong></p> <p>14:25 - 14:55 <strong>IL2</strong>: Laura Na Liu, “Dynamic plasmonic systems with controlled motion on the nanoscale”, University of Stuttgart, Germany</p> <p>14:55 - 15:10 <strong>O4</strong>: Haggai Shapira, “Development of a High-performance DNA Origami Rotary Motor, Monitored by Defocused Imaging of Gold Nanorods”, Ben Gurion University of the Negev, Israel</p> <p>15:10 - 15:25 <strong>O5</strong>: Damien Baigl, “Isothermal self-assembly of multicomponent and evolutive DNA nanostructures”, Ecole Normale Supérieure (ENS), France</p> <p>15:25- 15:40 <strong>O6</strong>: Iris Seitz, “Optically responsive protein coating of DNA origami for antigen targeting”, Aalto University, Finland</p> <p>15:40 – 15:50 <strong>Flash presentations</strong> (2 minutes each x 5)</p> <p>15:50 – 16:30 <strong>Tea Break + poster session</strong></p> <p>16:30 - 17:00 <strong>IL3</strong>: Maartje M.C. Bastings, “Patterns in Biology: DNA-origami as nano-tool to control multivalent binding”, École Polytechnique Fédérale de Lausanne (EPFL), Switzerland</p> <p>17:00 - 17:15 <strong>O7: </strong>Claudia Corti, “Hybrid gold-DNA origami nanostructures for colorimetric sensing”, Institut Langevin - ESPCI-PSL , France</p> <p>17:15 - 17:30 <strong>O8:</strong> Gregor Posnjak, “DNA-origami based diamond type lattice with visible wavelength periodicity”, LMU Munich, Germany</p> <p>17:30 - 17:45 <strong>O9</strong>: Casey M. Platnic, “A dissipative pathway for the structural evolution of DNA fibres”, University of Cambridge, UK</p> <p>17:45 - 18:00 <strong>O10</strong>: Alan Szalai, “Orientation of dsDNA relative to graphene determined by single-molecule fluorescence lifetime microscopy”, Ludwig-Maximilians-Universität München (LMU), Germany</p> <p><strong> </strong></p> <p><strong>Thursday 26th May: </strong></p> <p>9:00 - 9:30 <strong>IL4</strong>: Itamar Willner, “Aptananozymes – A New Class of Aptamer-Modified Nanoparticles for Catalysis and Chemodynamic Medicine”, The Hebrew University of Jerusalem, Israel</p> <p>9:30 - 9:45 <strong>O11</strong>: Amelie Heuer-Jungemann, “New insights into the DNA origami silicification reaction mechanism by in situ small angle X-ray scattering”, Max Planck Institute of Biochemistry, Martinsried, Germany</p> <p>9:45 - 10:00 <strong>O12:</strong> Joel Spratt, “Tuning the insulin receptor signalling pathway response using insulin-DNA origami nanostructures”, Karolinska Institute Stockholm, Sweden</p> <p>10:00 - 10:15 <strong>O13</strong>: Felix J. Rizzuto, “DNA sequence and length dictate the assembly of nucleic acid block copolymers”, School of Chemistry, University of New South Wales, Australia</p> <p>10:15 - 10:30 <strong>O14</strong>: Michael Pinner, “A DNA-based artificial membrane budding system”, Technical University of Munich, Germany</p> <p>10:30 - 10:45 <strong>Flash presentations </strong>(2 minutes each x 5)</p> <p>10:45 - 11:40 <strong>Coffee break + poster session</strong></p> <p>11:40 - 12:10 <strong>IL5</strong>: Lorenzo Di Michele, “A three-agent communication pathway triggered by bacterial metabolism (that uses DNA nanotechnology)”, Imperial College London, UK</p> <p>12:10 - 12:25 <strong>O15:</strong> Yongzheng Xing, “Designer DNA-based Membrane Nanopores for Portable Sensing of Diagnostic Proteins”, University College London, UK</p> <p>12:25 - 12:40 <strong>O16: </strong>Barbara Saccà, “Thermodynamic and kinetic properties of DNA-confined enzymes”, University Duisburg-Essen, Essen, Germany</p> <p>12:40 - 12:55 <strong>O17: </strong>Adrian Leathers, “Reaction-diffusion patterning of DNA-based artificial cells”, University of Cambridge, UK</p> <p>12:55 - 13:10 <strong>O18: </strong>Juliette Bucci, “Temporal control of DNA strand displacement reaction”, University of Rome, Tor Vergata, Italy</p> <p> </p> <p>13:10 - 14:10 <strong>Lunch</strong></p> <p> </p> <p>14:10 - 14:40 <strong>IL6</strong>: Elisa Franco, “Dynamic control of DNA condensates via strand displacement” University of California, Los Angeles, USA</p> <p>14:40 - 14:55 <strong>O19: </strong>Alexander J. Speakman, “Electrically Directed Gene Expression (EDGE): using switchable DNA triplexes and electrolysis to modulate transcription in a cell-free medium”, University of Edinburgh, UK</p> <p>14:55 - 15:10 <strong>O20:</strong> Aleksandra Adamczyk, “Orienting single molecules in DNA origami constructs”, University of Fribourg, Switzerland</p> <p>15:10 - 15:25 <strong>Flash presentations </strong>(2 minutes each x 5)</p> <p>15:25 - 15:40 Irene Ponzo, “switchSENSE and proFIRE - a DNA-based technology to discover molecular interactions and preparation of pure protein-DNA conjugates”, Dynamic Biosensor, Germany</p> <p>15:40 - 16:40 <strong>Coffee Break + informal discussion </strong></p> <p>16:40 - 20:00 <strong>Social programme (tour to Nemi – lake and town)</strong></p> <p>20:00 <strong>Social dinner + Award Ceremony</strong></p> <p><strong> </strong></p> <p><strong>Friday 27th of May</strong></p> <p> </p> <p>9:00 - 9:30 <strong>IL7: </strong>Andreas Walther, “Metabolic DNA Systems Inspired from Life:</p> <p>Protocells and Systems with Lifecycles”, University of Mainz, Germany</p> <p> </p> <p>9:30 - 9:45 <strong>O21:</strong> Matteo Castronovo, “Enzymatic DNA ligation within two-dimensional DNA origami depends on nanostructure shape”, University of Leeds, UK</p> <p>9:45 – 10:00 <strong>O22</strong>: Alexis Vallée-Bélisle, “Bio-inspired DNA switches for sensing and drug delivery applications”, University of Montreal, Canada</p> <p>10:00 - 10:15 <strong>O23</strong>: Giovanni Nava, “Probing the conformational dynamics of long unstructured single stranded DNA chains”, University of Milan, Italy</p> <p>10:15 - 10:30 <strong>O24</strong>: Ioanna Smyrlaki, “DNA Origami nano-patterns as a Precise Tool to study clustering of Notch receptor” Karolinska Institute, Sweden</p> <p>10:30 - 10:45 <strong>O25</strong>: Guillaume Gines, “DNA-enzyme neural networks enabling nonlinear concentration profile classification”, Gulliver Laboratory,Université Paris Sciences et Lettres, France</p> <p> </p> <p>10:45 - 11:30 <strong>Coffee break </strong></p> <p> </p> <p>11:30 - 11:45 <strong>O26</strong>: Christoph Wälti, “Counting individual molecules: DNA nanostructures for diagnostic applications”, University of Leeds, UK</p> <p>11:45 - 12:00 <strong>O27</strong>: Adrian Keller, “Hierarchical self-assembly of DNA origami lattices at solid-liquid interfaces”, Paderborn University, Germany</p> <p>12:00 - 12:15 <strong>O28</strong>: Rakesh Mukherjee, “Kinetic proofreading in a DNA strand displacement network”, Imperial College London, UK</p> <p> </p> <p>12:15- 12:45 <strong>Award presentations + closing remarks</strong></p> <p> </p> <p>13:00 <strong>Light lunch </strong></p> <p><strong> </strong></p> <p><strong> </strong><strong> </strong></p> <p><strong>Posters</strong></p> <p><strong> </strong></p> <p><strong> </strong></p> <p><strong>P-1: Adam Dorey</strong>, University College London, “Synthetic protein-conductive membrane nanopores built with DNA” .</p> <p><strong>P-2: Aleksandra Bednarz, </strong>Aarhus University, “Ion-dependent structural integrity and reconfigurability of DNA origami nanostructures.</p> <p><strong>P-3: Alessandro Cecconello,</strong> University of Padova, “Regulating in vitro transcription using RNA/DNA triplex-based biosynthetic machineries”.</p> <p><strong>P-4: Alexander M. Kloosterman, </strong>Karolinska Institutet<strong>, “</strong>Spatial inference of barcoded transcripts from sequencing data”.</p> <p><strong>P-5: Alexia Rottensteiner,</strong> University College London (UCL), “A Light-Actuated DNA Channel for Controlled Transport Across Membranes”.</p> <p><strong>P-6: Ali Khoshouei,</strong> Technical University Munich, “CryoEM structure determination using DNA nanotechnology”.</p> <p><strong>P-7: Ana Martins, </strong>University of Porto, “Neuronal targeting with functionalized tetrahedral DNA nanostructures”.</p> <p><strong>P-8: Andreas Peil</strong>, University of Stuttgart; Max Planck Institute for Solid State Research, “DNA Assembly of Modular Components into a Rotary Nanodevice”.</p> <p><strong>P-9: Andrew Stannard</strong>, Imperial College London, “Mechanically-modulated toehold mediated strand displacement“.</p> <p><strong>P-10: Annelies Dillen,</strong> University of Leuven, “Duplexed aptamers on fiber optic surface plasmon resonance sensors: a winning combination for continuous biosensing”.</p> <p><strong>P-11: Bhanu Kiran Pothineni, </strong>Paderborn University, “Novel vancomycin-conjugated DNA origami-based nanoantibiotics” .</p> <p><strong>P-12: Chalmers Chau,</strong> University of Leeds, “Single biomarker detection with affimer conjugated DNA origami through solid-state nanopore”.</p> <p><strong>P-13: Coline Kieffer</strong>, Université Paris Sciences et Lettres, “Tunable-gain amplifier in DNA-enzyme reaction circuits and its applications in microRNA biosensing”.</p> <p><strong>P-14: Wooli Bae</strong>, University of Surrey, “Building an RNA-Based Toggle Switch Using Inhibitory RNA Aptamers”.</p> <p><strong>P-15: Christoph Pauer</strong>, Ludwig-Maximilians-Universität München (LMU), “Propulsion of magnetic beads asymmetrically covered with DNA Origami appendages”.</p> <p><strong>P-16: Volodymyr Mykhailiuk, </strong>Technical University Munich, “DNAzymes for mass production of DNA oligonucleotides”.</p> <p><strong>P-17: Christopher Frank, </strong>Technical University Munich, “Cell surface-mediated conformational changes of DNA-Origami objects“.</p> <p><strong>P-18: Diana Morzy,</strong> EPFL, Switzerland, “Valency and entropic costs determine the cation-mediated DNA/lipid binding”.</p> <p><strong>P-19: Elena-Marie Willner, </strong>Technical University Munich, “Virus neutralization using icosahedral DNA origami shells”.</p> <p><strong>P-20: Elija Feigl, </strong>Technical University Munich, “WaffleCraft: Fully Automated Blocky DNA Origami Design Tool”.</p> <p><strong>P-21: Fabian Kohler, </strong>Technical University of Munich, “Precision Design and Characterization of DNA Origami Corner Motifs using Cryo-EM”.</p> <p><strong>P-22: Farah El Fakih,</strong> Ecole Normale Supérieure, “Reversible Supra‐Folding of User‐Programmed Functional DNA Nanostructures on Fuzzy Cationic Substrates”.</p> <p><strong>P-23: Florian Rothfischer, </strong>Technical University of Munich/ Ludwig-Maximilians-Universität München, “Control of enzyme activity by a DNA nanoscale robotic arm”.</p> <p><strong>P-24: Francesca Smith,</strong> Imperial College London, “Characterisation of RNA/DNA hybrid strand displacement kinetics”.</p> <p><strong>P-25: Gerrit Wilkens,</strong> Jagiellonian University, Malopolska Centre of Biotechnology, “Blowing “bubbles” with DNA origami”.</p> <p><strong>P-26: Giacomo Fabrini</strong>, Imperial College London, “Cation-Responsive and Photocleavable Hydrogels from Noncanonical Amphiphilic DNA Nanostructure”.</p> <p><strong>P-27: Viktorija Kozina, </strong>Technical University Munich, “Targeting antigen patterns with programmable T-cell engagers”.</p> <p><strong>P-28: Igor Baars,</strong> Karolinska Institutet, “Spatial reconstruction using barcoded DNA sequences”.</p> <p><strong>P-29: Jacky Loo,</strong> Aalto University, “Colorimetric Visualization with Visible Chirality”.</p> <p><strong>P-30: Jing Huang, </strong>CENIDE and ZMB, University of Duisburg-Essen, “A DNA-confined unfoldase/protease nanomachine”.</p> <p><strong>P-31: Viktorija Glembockyte</strong>, LMU Munich, “Self-regeneration and self-healing in DNA nanostructures”.</p> <p><strong>P-32: Nada Farag, </strong>University of Rome Tor Vergata, “Programmable decoration of DNA-based scaffold through dynamic exchange of structural motifs”.</p> <p><strong>P-33: Kevin Jahnke,</strong> Max Planck Institute for Medical Research; Heidelberg University, Rational engineering of DNA cytoskeletons for synthetic cells”.</p> <p><strong>P-34: Lena Stenke</strong>, University Duisburg-Essen, Germany, “Dynamics of DNA origami filaments growth from a ditopic monomer”.</p> <p><strong>P-35: Lorena Baranda</strong>, University of Rome Tor Vergata, “Protein-Templated Reactions Using DNA-Antibody Conjugates”.</p> <p><strong>P-36: Ulrich Kemper,</strong> University of Leipzig, “DNA mold-based fabrication of palladium nanostructures”.</p> <p><strong>P-37: Ludwig Rotsen</strong>, Univ. Grenoble Alpes, “Substrate-assisted self-assembly of DNA origamis for lithographic applications”.</p> <p><strong>P-38: James Vesenka, </strong>University of New England and Leibniz-IPHT Biophotonics, “AFM analysis of G-wire DNA structure and nanoparticle decoration”.</p> <p><strong>P-39: Marcel Hanke</strong>, Paderborn University, “Salting-out of DNA Origami Nanostructures by Ammonium Sulfate”.</p> <p><strong>P-40: Tania Patino</strong>, University of Rome Tor Vergata, “Bioengineering DNA-based enzyme-powered nanoswimmers”.</p> <p><strong>P-41: Sara Bracaglia</strong>, University of Rome Tor Vergata, “Programmable cell-free transcriptional switches for antibodies detection”.</p> <p><strong>P-42: Marcus Fletcher</strong>, University of Cambridge, “G-Quadruplex DNA based fluorescent sensing for quantification of potassium ion flux across giant proteoliposomes”.</p> <p><strong>P-43: Matthew Aquilina</strong>, University of Edinburgh, “Multiplexed Label-Free Biomarker Detection by Targeted Disassembly of Variable-Length DNA Payload Chains”.</p> <p><strong>P-44: Maximilian Nicolas Honemann,</strong> Technical University of Munich, “A novel lattice design for scaffolded DNA origami structures”.</p> <p><strong>P-45: Michal Walczak</strong>, University of Cambridge, “Stimuli-responsive DNA particles underpin three-agent signaling networks with live bacteria and synthetic cells”.</p> <p><strong>P-46: Daniela Sorrentino</strong>, University of Rome Tor Vergata, “Allosteric regulation of DNA-based nanodevices using in vitro transcription”.</p> <p><strong>P-47: Nathanv Wu</strong>, University of Edinburgh, “A DNA Nanotechnology Assay to Detect Double-Stranded DNA for Medical Applications”.</p> <p><strong>P-48: Nico Alleva, </strong>Max-Planck Institute for Polymer Research, “Diverse, highly efficient grafting to strategy for the patterning of DNA-origami”.</p> <p><strong>P-49: Richard Kosinski</strong>, University of Duisburg-Essen, “The role of DNA nanostructures in the catalytic properties of an allosterically regulated protease”.</p> <p><strong>P-50: Roger Rubio Sanchez</strong>, Imperial College London, “A modular, dynamic, DNA-based platform for regulating cargo distribution and transport between lipid domains”.</p> <p><strong>P-51: Sabrina Gambietz</strong>, University Duisburg-Essen, Germany, “Thermal and mechanical properties of topologically identical origami domains at the ensemble and single-molecule level”.</p> <p><strong>P-52: Sayantan De,</strong> University Duisburg-Essen, Essen (Germany), “A DNA logic gate to sense molecular distances”.</p> <p><strong>P-53: Seppe Driesen</strong>, University of Leuven, “Towards DNA-only digital biosensing with DNA nanosensors”.</p> <p><strong>P-54: Sergii Rudiuk</strong>, Ecole Normale Supérieure, “DNA-protein nanogels as transfectable multienzymatic nanoreactors“.</p> <p><strong>P-55: Sofia Julin</strong>, Aalto University, “pH-Responsive DNA Origami Lattice”.</p> <p><strong>P-56: Steffan Møller Sønderskov</strong>, Aarhus University, “High-resolution surface charge density visualization of DNA nanostructures”.</p> <p><strong>P-57:</strong> <strong>Serena Gentile, </strong>University of Rome Tor Vergata, “Spontaneous reorganization of DNA-based polymers in higher ordered structures fueled by RNA”.</p> <p><strong>P-58:</strong> <strong>Teun Huijben</strong>, Technical University of Denmark, “Fast and exact reduction of mislocalizations near spherical nanoparticles by a fully analytical PSF”.</p> <p><strong>P-59:</strong> <strong>Miguel Paez-Perez</strong>, Imperial College London, “Effect of lipid composition on the efficiency of fusogenic DNA nanostructures”.</p> <p><strong>P-60: Ken Sachenbacher, </strong>Technical University Munich, “Triple-stranded DNA as a structural element in DNA origami”.</p> <p><strong>P-61:</strong> <strong>Marco Lolaico,</strong> Karolinska Institute, “Enhanced stiffness of wireframe DNA nanostructures with square lattice edges”.</p> <p><strong>P-62:</strong> <strong>Neda Bagheri</strong>, University of Rome Tor Vergata, “Enhancement of CRISPR/Cas12a trans-cleavage Activity Using Hairpin DNA Reporters”.</p> <p> </p> <p> </p> <h4></h4> </div> <footer class="post-footer clearfix"> </footer> </section> </div> </article> </div> </div> </div> <div id="czr-push-footer"></div> </div> <footer id="footer" class="footer__wrapper"> <div id="colophon" class="colophon "> <div class="container"> <div class="colophon__row row flex-row justify-content-between"> <div class="col-12 col-sm-auto"> <div id="footer__credits" class="footer__credits"> <p class="czr-copyright"> <span class="czr-copyright-text">© 2022 </span><a class="czr-copyright-link" href="/" title="FDN2022">FDN2022</a><span class="czr-rights-text"> – All rights reserved</span> </p> <p class="czr-credits"> <span class="czr-designer"> <span class="czr-wp-powered"><span class="czr-wp-powered-text">Powered by </span><a class="czr-wp-powered-link" title="Powered by 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