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Orbital overlap - Wikipedia

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<div class="mw-indicators"> </div> <div id="siteSub" class="noprint">From Wikipedia, the free encyclopedia</div> </div> <div id="contentSub"><div id="mw-content-subtitle"><span class="mw-redirectedfrom">(Redirected from <a href="/w/index.php?title=Overlap_matrix&amp;redirect=no" class="mw-redirect" title="Overlap matrix">Overlap matrix</a>)</span></div></div> <div id="mw-content-text" class="mw-body-content"><div class="mw-content-ltr mw-parser-output" lang="en" dir="ltr"><div class="shortdescription nomobile noexcerpt noprint searchaux" style="display:none">Concentration of chemical orbitals on adjacent atoms</div> <p>In <a href="/wiki/Chemical_bond" title="Chemical bond">chemical bonds</a>, an <b>orbital overlap</b> is the concentration of <a href="/wiki/Atomic_orbital" title="Atomic orbital">orbitals</a> on adjacent atoms in the same regions of space. Orbital overlap can lead to bond formation. <a href="/wiki/Linus_Pauling" title="Linus Pauling">Linus Pauling</a> explained the importance of orbital overlap in the molecular <a href="/wiki/Bond_angle" class="mw-redirect" title="Bond angle">bond angles</a> observed through experimentation; it is the basis for <a href="/wiki/Orbital_hybridization" class="mw-redirect" title="Orbital hybridization">orbital hybridization</a>. As <i>s</i>&#160;orbitals are spherical (and have no directionality) and <i>p</i> orbitals are oriented 90° to each other, a theory was needed to explain why molecules such as <a href="/wiki/Methane" title="Methane">methane</a> (CH<sub>4</sub>) had observed bond angles of 109.5°.<sup id="cite_ref-1" class="reference"><a href="#cite_note-1"><span class="cite-bracket">&#91;</span>1<span class="cite-bracket">&#93;</span></a></sup> Pauling proposed that s and p orbitals on the carbon atom can combine to form hybrids (sp<sup>3</sup> in the case of methane) which are directed toward the hydrogen atoms. The carbon hybrid orbitals have greater overlap with the hydrogen orbitals, and can therefore form stronger C–H bonds.<sup id="cite_ref-2" class="reference"><a href="#cite_note-2"><span class="cite-bracket">&#91;</span>2<span class="cite-bracket">&#93;</span></a></sup> </p><p>A quantitative measure of the overlap of two atomic orbitals Ψ<sub>A</sub> and Ψ<sub>B</sub> on atoms A and B is their <b>overlap integral</b>, defined as </p> <dl><dd><span class="mwe-math-element"><span class="mwe-math-mathml-inline mwe-math-mathml-a11y" style="display: none;"><math xmlns="http://www.w3.org/1998/Math/MathML" alttext="{\displaystyle \mathbf {S} _{\mathrm {AB} }=\int \Psi _{\mathrm {A} }^{*}\Psi _{\mathrm {B} }\,dV,}"> <semantics> <mrow class="MJX-TeXAtom-ORD"> <mstyle displaystyle="true" scriptlevel="0"> <msub> <mrow class="MJX-TeXAtom-ORD"> <mi mathvariant="bold">S</mi> </mrow> <mrow class="MJX-TeXAtom-ORD"> <mrow class="MJX-TeXAtom-ORD"> <mi mathvariant="normal">A</mi> <mi mathvariant="normal">B</mi> </mrow> </mrow> </msub> <mo>=</mo> <mo>&#x222B;<!-- ∫ --></mo> <msubsup> <mi mathvariant="normal">&#x03A8;<!-- Ψ --></mi> <mrow class="MJX-TeXAtom-ORD"> <mrow class="MJX-TeXAtom-ORD"> <mi mathvariant="normal">A</mi> </mrow> </mrow> <mrow class="MJX-TeXAtom-ORD"> <mo>&#x2217;<!-- ∗ --></mo> </mrow> </msubsup> <msub> <mi mathvariant="normal">&#x03A8;<!-- Ψ --></mi> <mrow class="MJX-TeXAtom-ORD"> <mrow class="MJX-TeXAtom-ORD"> <mi mathvariant="normal">B</mi> </mrow> </mrow> </msub> <mspace width="thinmathspace" /> <mi>d</mi> <mi>V</mi> <mo>,</mo> </mstyle> </mrow> <annotation encoding="application/x-tex">{\displaystyle \mathbf {S} _{\mathrm {AB} }=\int \Psi _{\mathrm {A} }^{*}\Psi _{\mathrm {B} }\,dV,}</annotation> </semantics> </math></span><img src="https://wikimedia.org/api/rest_v1/media/math/render/svg/ca616d84b121af3e013cee6a37b3362eb2cc93de" class="mwe-math-fallback-image-inline mw-invert skin-invert" aria-hidden="true" style="vertical-align: -2.338ex; width:20.307ex; height:5.676ex;" alt="{\displaystyle \mathbf {S} _{\mathrm {AB} }=\int \Psi _{\mathrm {A} }^{*}\Psi _{\mathrm {B} }\,dV,}"></span></dd></dl> <p>where the integration extends over all space. The star on the first orbital wavefunction indicates the function's <a href="/wiki/Complex_conjugate" title="Complex conjugate">complex conjugate</a>, which in general may be <a href="/wiki/Complex-valued" class="mw-redirect" title="Complex-valued">complex-valued</a>. </p> <div class="mw-heading mw-heading2"><h2 id="Overlap_matrix">Overlap matrix</h2><span class="mw-editsection"><span class="mw-editsection-bracket">[</span><a href="/w/index.php?title=Orbital_overlap&amp;action=edit&amp;section=1" title="Edit section: Overlap matrix"><span>edit</span></a><span class="mw-editsection-bracket">]</span></span></div> <p>The <b>overlap matrix</b> is a <a href="/wiki/Square_matrix" title="Square matrix">square matrix</a>, used in <a href="/wiki/Quantum_chemistry" title="Quantum chemistry">quantum chemistry</a> to describe the inter-relationship of a set of <a href="/wiki/Basis_vector" class="mw-redirect" title="Basis vector">basis vectors</a> of a <a href="/wiki/Quantum_mechanics" title="Quantum mechanics">quantum</a> system, such as an atomic orbital <a href="/wiki/Basis_set_(chemistry)" title="Basis set (chemistry)">basis set</a> used in molecular electronic structure calculations. In particular, if the vectors are <a href="/wiki/Orthogonal" class="mw-redirect" title="Orthogonal">orthogonal</a> to one another, the overlap matrix will be diagonal. In addition, if the basis vectors form an <a href="/wiki/Orthonormal" class="mw-redirect" title="Orthonormal">orthonormal</a> set, the overlap matrix will be the <a href="/wiki/Identity_matrix" title="Identity matrix">identity matrix</a>. The overlap matrix is always <i>n</i>&#215;<i>n</i>, where <i>n</i> is the number of basis functions used. It is a kind of <a href="/wiki/Gramian_matrix" class="mw-redirect" title="Gramian matrix">Gramian matrix</a>. </p><p>In general, each overlap matrix element is defined as an overlap integral: </p> <dl><dd><span class="mwe-math-element"><span class="mwe-math-mathml-inline mwe-math-mathml-a11y" style="display: none;"><math xmlns="http://www.w3.org/1998/Math/MathML" alttext="{\displaystyle \mathbf {S} _{jk}=\left\langle b_{j}|b_{k}\right\rangle =\int \Psi _{j}^{*}\Psi _{k}\,d\tau }"> <semantics> <mrow class="MJX-TeXAtom-ORD"> <mstyle displaystyle="true" scriptlevel="0"> <msub> <mrow class="MJX-TeXAtom-ORD"> <mi mathvariant="bold">S</mi> </mrow> <mrow class="MJX-TeXAtom-ORD"> <mi>j</mi> <mi>k</mi> </mrow> </msub> <mo>=</mo> <mrow> <mo>&#x27E8;</mo> <mrow> <msub> <mi>b</mi> <mrow class="MJX-TeXAtom-ORD"> <mi>j</mi> </mrow> </msub> <mrow class="MJX-TeXAtom-ORD"> <mo stretchy="false">|</mo> </mrow> <msub> <mi>b</mi> <mrow class="MJX-TeXAtom-ORD"> <mi>k</mi> </mrow> </msub> </mrow> <mo>&#x27E9;</mo> </mrow> <mo>=</mo> <mo>&#x222B;<!-- ∫ --></mo> <msubsup> <mi mathvariant="normal">&#x03A8;<!-- Ψ --></mi> <mrow class="MJX-TeXAtom-ORD"> <mi>j</mi> </mrow> <mrow class="MJX-TeXAtom-ORD"> <mo>&#x2217;<!-- ∗ --></mo> </mrow> </msubsup> <msub> <mi mathvariant="normal">&#x03A8;<!-- Ψ --></mi> <mrow class="MJX-TeXAtom-ORD"> <mi>k</mi> </mrow> </msub> <mspace width="thinmathspace" /> <mi>d</mi> <mi>&#x03C4;<!-- τ --></mi> </mstyle> </mrow> <annotation encoding="application/x-tex">{\displaystyle \mathbf {S} _{jk}=\left\langle b_{j}|b_{k}\right\rangle =\int \Psi _{j}^{*}\Psi _{k}\,d\tau }</annotation> </semantics> </math></span><img src="https://wikimedia.org/api/rest_v1/media/math/render/svg/dad567e54933b61b276669db44609486015b1ee2" class="mwe-math-fallback-image-inline mw-invert skin-invert" aria-hidden="true" style="vertical-align: -2.338ex; width:27.043ex; height:5.676ex;" alt="{\displaystyle \mathbf {S} _{jk}=\left\langle b_{j}|b_{k}\right\rangle =\int \Psi _{j}^{*}\Psi _{k}\,d\tau }"></span></dd></dl> <p>where </p> <dl><dd><span class="mwe-math-element"><span class="mwe-math-mathml-inline mwe-math-mathml-a11y" style="display: none;"><math xmlns="http://www.w3.org/1998/Math/MathML" alttext="{\displaystyle \left|b_{j}\right\rangle }"> <semantics> <mrow class="MJX-TeXAtom-ORD"> <mstyle displaystyle="true" scriptlevel="0"> <mrow> <mo>|</mo> <msub> <mi>b</mi> <mrow class="MJX-TeXAtom-ORD"> <mi>j</mi> </mrow> </msub> <mo>&#x27E9;</mo> </mrow> </mstyle> </mrow> <annotation encoding="application/x-tex">{\displaystyle \left|b_{j}\right\rangle }</annotation> </semantics> </math></span><img src="https://wikimedia.org/api/rest_v1/media/math/render/svg/b46068fa6caa2a16c2127e8aaa60a367a9e7f106" class="mwe-math-fallback-image-inline mw-invert skin-invert" aria-hidden="true" style="vertical-align: -1.005ex; width:3.459ex; height:3.009ex;" alt="{\displaystyle \left|b_{j}\right\rangle }"></span> is the <i>j</i>-th basis <a href="/wiki/Bra-ket_notation" class="mw-redirect" title="Bra-ket notation">ket</a> (<a href="/wiki/Vector_(geometric)" class="mw-redirect" title="Vector (geometric)">vector</a>), and</dd></dl> <dl><dd><span class="mwe-math-element"><span class="mwe-math-mathml-inline mwe-math-mathml-a11y" style="display: none;"><math xmlns="http://www.w3.org/1998/Math/MathML" alttext="{\displaystyle \Psi _{j}}"> <semantics> <mrow class="MJX-TeXAtom-ORD"> <mstyle displaystyle="true" scriptlevel="0"> <msub> <mi mathvariant="normal">&#x03A8;<!-- Ψ --></mi> <mrow class="MJX-TeXAtom-ORD"> <mi>j</mi> </mrow> </msub> </mstyle> </mrow> <annotation encoding="application/x-tex">{\displaystyle \Psi _{j}}</annotation> </semantics> </math></span><img src="https://wikimedia.org/api/rest_v1/media/math/render/svg/dd90ab3d9773fcc129105ee0fee4f5e1168c616e" class="mwe-math-fallback-image-inline mw-invert skin-invert" aria-hidden="true" style="vertical-align: -1.005ex; width:2.718ex; height:2.843ex;" alt="{\displaystyle \Psi _{j}}"></span> is the <i>j</i>-th <a href="/wiki/Wavefunction" class="mw-redirect" title="Wavefunction">wavefunction</a>, defined as&#160;:<span class="mwe-math-element"><span class="mwe-math-mathml-inline mwe-math-mathml-a11y" style="display: none;"><math xmlns="http://www.w3.org/1998/Math/MathML" alttext="{\displaystyle \Psi _{j}(x)=\left\langle x|b_{j}\right\rangle }"> <semantics> <mrow class="MJX-TeXAtom-ORD"> <mstyle displaystyle="true" scriptlevel="0"> <msub> <mi mathvariant="normal">&#x03A8;<!-- Ψ --></mi> <mrow class="MJX-TeXAtom-ORD"> <mi>j</mi> </mrow> </msub> <mo stretchy="false">(</mo> <mi>x</mi> <mo stretchy="false">)</mo> <mo>=</mo> <mrow> <mo>&#x27E8;</mo> <mrow> <mi>x</mi> <mrow class="MJX-TeXAtom-ORD"> <mo stretchy="false">|</mo> </mrow> <msub> <mi>b</mi> <mrow class="MJX-TeXAtom-ORD"> <mi>j</mi> </mrow> </msub> </mrow> <mo>&#x27E9;</mo> </mrow> </mstyle> </mrow> <annotation encoding="application/x-tex">{\displaystyle \Psi _{j}(x)=\left\langle x|b_{j}\right\rangle }</annotation> </semantics> </math></span><img src="https://wikimedia.org/api/rest_v1/media/math/render/svg/d74d5986b89b84538132ff1e9fbb695bb7288a2f" class="mwe-math-fallback-image-inline mw-invert skin-invert" aria-hidden="true" style="vertical-align: -1.005ex; width:14.648ex; height:3.009ex;" alt="{\displaystyle \Psi _{j}(x)=\left\langle x|b_{j}\right\rangle }"></span>.</dd></dl> <p>In particular, if the set is normalized (though not necessarily orthogonal) then the diagonal elements will be identically 1 and the magnitude of the <a href="/wiki/Off-diagonal_element" class="mw-redirect" title="Off-diagonal element">off-diagonal elements</a> less than or equal to one with equality if and only if there is linear dependence in the basis set as per the <a href="/wiki/Cauchy%E2%80%93Schwarz_inequality" title="Cauchy–Schwarz inequality">Cauchy–Schwarz inequality</a>. Moreover, the matrix is always <a href="/wiki/Positive-definite_matrix" class="mw-redirect" title="Positive-definite matrix">positive definite</a>; that is to say, the eigenvalues are all strictly positive. </p> <div class="mw-heading mw-heading2"><h2 id="See_also">See also</h2><span class="mw-editsection"><span class="mw-editsection-bracket">[</span><a href="/w/index.php?title=Orbital_overlap&amp;action=edit&amp;section=2" title="Edit section: See also"><span>edit</span></a><span class="mw-editsection-bracket">]</span></span></div> <ul><li><a href="/wiki/Roothaan_equations" title="Roothaan equations">Roothaan equations</a></li> <li><a href="/wiki/Hartree%E2%80%93Fock_method" title="Hartree–Fock method">Hartree–Fock method</a></li> <li><a href="/wiki/Pi_bond" title="Pi bond">Pi bond</a></li> <li><a href="/wiki/Sigma_bond" title="Sigma bond">Sigma bond</a></li></ul> <div class="mw-heading mw-heading2"><h2 id="References">References</h2><span class="mw-editsection"><span class="mw-editsection-bracket">[</span><a href="/w/index.php?title=Orbital_overlap&amp;action=edit&amp;section=3" title="Edit section: References"><span>edit</span></a><span class="mw-editsection-bracket">]</span></span></div> <div class="mw-references-wrap"><ol class="references"> <li id="cite_note-1"><span class="mw-cite-backlink"><b><a href="#cite_ref-1">^</a></b></span> <span class="reference-text">Anslyn, Eric V./Dougherty, Dennis A. (2006). <i>Modern Physical Organic Chemistry</i>. University Science Books.</span> </li> <li id="cite_note-2"><span class="mw-cite-backlink"><b><a href="#cite_ref-2">^</a></b></span> <span class="reference-text">Pauling, Linus. (1960). <i>The Nature Of The Chemical Bond</i>. Cornell University Press.</span> </li> </ol></div> <p><i>Quantum Chemistry: Fifth Edition</i>, Ira N. 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