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href="../test_procedures/index.html">Test Procedures</a></li> <li class="toctree-l1"><a class="reference internal" href="../usage_metrics.html">Usage Metrics</a></li> </ul> </div> </div> </nav> <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" style="background: #e3e3e3" > <i data-toggle="wy-nav-top" class="fa fa-bars"></i> <a href="../index.html">BV-BRC</a> </nav> <div class="wy-nav-content"> <div class="rst-content"> <div role="navigation" aria-label="Page navigation"> <ul class="wy-breadcrumbs"> <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li> <li class="breadcrumb-item active">Quick Reference Guides</li> <li class="wy-breadcrumbs-aside"> <a href="../_sources/quick_references/index.rst.txt" rel="nofollow"> View page source</a> </li> </ul> <hr/> </div> <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article"> <div itemprop="articleBody"> <section id="quick-reference-guides"> <h1>Quick Reference Guides<a class="headerlink" href="#quick-reference-guides" title="Permalink to this heading">¶</a></h1> <p>The BV-BRC website resource provides an entry point to integrated data and tools for viral and bacterial infectious disease research. The website is organized by data types and analysis tools. These <strong>Quick Reference Guides</strong> provide summary information for each of the components of the website, including information on what the component is, what it does, where it is located, and an overview of its features.</p> <div class="toctree-wrapper compound"> <p class="caption" role="heading"><span class="caption-text">Contents:</span></p> <ul> <li class="toctree-l1"><a class="reference internal" href="organisms_menu.html">Organisms and Data Types</a></li> <li class="toctree-l1"><a class="reference internal" href="searches_menu.html">Advanced Searches</a></li> <li class="toctree-l1"><a class="reference internal" href="services_menu.html">Tools & Services</a></li> <li class="toctree-l1"><a class="reference internal" href="workspace_groups_upload.html">Workspaces and Groups</a></li> <li class="toctree-l1"><a class="reference internal" href="global_search.html">Global Search</a></li> <li class="toctree-l1"><a class="reference internal" href="registration.html">Registration and Sign In</a></li> <li class="toctree-l1"><a class="reference internal" href="views_tables_action-bar.html">Website Views, Tables, Filters, Action Bar</a></li> <li class="toctree-l1"><a class="reference internal" href="system_requirements.html">System Requirements</a></li> <li class="toctree-l1"><a class="reference internal" href="ftp.html">FTP Site</a></li> </ul> </div> <p>Primary access to these components is provided through the BV-BRC main menu which is available at the top of the home page. The main menu includes the following options:</p> <figure class="align-default"> <img alt="BV-BRC Top Menu Bar" src="../_images/bv-brc_top_menu2.png" /> </figure> <ul class="simple"> <li><p><a class="reference external" href="organisms_menu.html">Organisms</a> - links to bacterial and viral data sorted into genera and families, respectively. On each organism page, further divisions into data types are available from the data tabs such as Overview, Taxonomy, Phylogeny, Genome/Strain List, Gene/Features, Protein Families, Protein Structures, etc.</p></li> <li><p><a class="reference external" href="searches_menu.html">Searches</a> - links to specialized advanced searches across the various data types in BV-BRC.</p></li> <li><p><a class="reference external" href="services_menu.html">Services and Tools</a> - links to data processing and analysis pipelines in BV-BRC. Currently, services are available for processing user-supplied data including Genome Assembly, Genome Annotation, BLAST, Variation Analysis, RNA-Seq Analysis, Protein Family Comparison, Proteome Comparison, Pathway Comparison, and others.</p></li> <li><p><a class="reference external" href="workspace_groups_upload.html">Workspace, Private Data, Groups, Jobs</a> - links to the private workspace and subdirectories in the private workspace; service jobs; and private genomes.</p></li> <li><p><a class="reference external" href="help_menu.html">Help</a> - links to documentaion pages containing Quick Reference Guides, Tutorials, Webinars, and information to Provide Feedback.</p></li> <li><p><a class="reference external" href="about_menu.html">About</a> - links to pages containing additional information such as About BV-BRC, Contact Us, Our Team, Announcements, Outreach, Publications, Citations, Related Resources, and the BV-BRC GitHub code repository.</p></li> <li><p><a class="reference external" href="registration.html">Registration / Sign In</a> - allows creation of a BV-BRC account, enabling use of BV-BRC services and a private workspace. Alternatively, users can use the “Sign In” option if they already have a BV-BRC account. After logging in, these options are replaced with a person icon, which provides access to the user’s account settings and the option to log out.</p></li> <li><p><a class="reference external" href="views_tables_action-bar.html">Views, Tables, Action Bar</a> - Common navigation elements and tools throughout the website.</p></li> <li><p><a class="reference external" href="system_requirements.html">System Requirements</a> - Minimal hardware and software needs for the user’s computer in order to be able to use BV-BRC’s features and functionality successfully.</p></li> </ul> </section> </div> </div> <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer"> <a href="../data_protocols/antimicrobial_resistance.html" class="btn btn-neutral float-left" title="Antimicrobial Resistance (AMR)" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a> <a href="organisms_menu.html" class="btn btn-neutral float-right" title="Organisms and Data Types" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a> </div> <hr/> <div role="contentinfo"> <p>© Copyright 2023 | The BV-BRC Team.</p> </div> Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a> provided by <a href="https://readthedocs.org">Read the Docs</a>. </footer> </div> </div> </section> </div> <script> jQuery(function () { SphinxRtdTheme.Navigation.enable(true); }); </script> <script> var logo = '<img src="https://www.bv-brc.org/docs/_static/bvbrc-logo-blue.png" class="logo" alt="BV-BRC Logo">'; var home = '<div class="branding"><a href="https://bv-brc.org" title="BV-BRC Homepage">BV-BRC Home</a> &rsaquo; <a href="/docs/" title="BV-BRC Documentation">Docs</a></div>'; $(".wy-side-nav-search").prepend(home).prepend(logo); </script>  <script async src="https://www.googletagmanager.com/gtag/js?id=G-GS8F60MG56"></script> <script> window.dataLayer = window.dataLayer || []; function gtag(){dataLayer.push(arguments);} gtag('js', new Date()); gtag('config', 'G-GS8F60MG56'); </script>  <script async src="https://www.googletagmanager.com/gtag/js?id=UA-165638318-1"></script> <script> window.dataLayer = window.dataLayer || []; function gtag(){dataLayer.push(arguments);} gtag('js', new Date()); gtag('config', 'UA-165638318-1'); </script> </body> </html>