Use - Turn-key research data management repository

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href="#list-records" class="md-nav__link"> List records </a> <nav class="md-nav" aria-label="List records"> <ul class="md-nav__list"> <li class="md-nav__item"> <a href="#notes" class="md-nav__link"> Notes </a> </li> </ul> </nav> </li> <li class="md-nav__item"> <a href="#create-records" class="md-nav__link"> Create records </a> <nav class="md-nav" aria-label="Create records"> <ul class="md-nav__list"> <li class="md-nav__item"> <a href="#create-a-draft" class="md-nav__link"> Create a draft </a> </li> <li class="md-nav__item"> <a href="#publish-a-draft" class="md-nav__link"> Publish a draft </a> </li> </ul> </nav> </li> <li class="md-nav__item"> <a href="#get-a-record" class="md-nav__link"> Get a record </a> </li> <li class="md-nav__item"> <a href="#upload-a-file-to-a-record" class="md-nav__link"> Upload a file to a record </a> </li> <li class="md-nav__item"> <a href="#explore-the-api" class="md-nav__link"> Explore the API </a> </li> <li class="md-nav__item"> <a href="#stop-it" class="md-nav__link"> Stop it </a> </li> </ul> </nav> </div> </div> </div> <div class="md-content" data-md-component="content"> <article class="md-content__inner md-typeset"> <h1 id="use-inveniordm">Use InvenioRDM<a class="headerlink" href="#use-inveniordm" title="Permanent link">¶</a></h1> <div class="admonition warning"> Use the specified host and port Due to CSP, it is important that you use the host and port specified when running the API calls. This means <code>localhost</code> and <code>127.0.0.1</code> are not interchangable as they usually are. The default is <code>127.0.0.1:5000</code> for the development installation and <code>127.0.0.1</code> for the containerized installation. Here we show examples with the development installation. </div> <h3 id="use-your-browser">Use your browser<a class="headerlink" href="#use-your-browser" title="Permanent link">¶</a></h3> Navigate to <a href="https://127.0.0.1:5000">https://127.0.0.1:5000</a>. Note that you might need to accept the SSL exception since it's using a test certificate. Below, we list a small subset of the common API calls. For more, see the <a href="../../reference/rest_api_index/">API reference section</a>. <h3 id="list-records">List records<a class="headerlink" href="#list-records" title="Permanent link">¶</a></h3> Let's see what is in the instance by querying the API. Using another terminal: <div class="highlight"><pre><code>curl -k -XGET https://127.0.0.1:5000/api/records | python3 -m json.tool </code></pre></div> <div class="highlight"><pre><code>{ "aggregations": { "access_right": { "doc_count_error_upper_bound": 0, "sum_other_doc_count": 0, "buckets": [ { "key": "open", "doc_count": 100 } ] } }, ... "hits": { "hits": [ { "access": { "files": "restricted", "embargo": { "reason": "top secret material", "until": "2021-08-09", "active": true }, "record": "public", "owned_by": [ { "user": 1 } ] }, "id": "mrewd-axc44", "metadata": { "sizes": [ "11 pages" ], "references": [ { "identifier": "0000000114559647", "scheme": "isni", "reference": "Reference to something et al." } ], "additional_descriptions": [ { "lang": "eng", "description": "The ten free worry lose receive. Feeling church know anyone significant. Public note part style want discussion.", "type": "methods" }, { "lang": "eng", "description": "Make voice store worry artist real. Ever movement policy born.\nAlmost trial new if. Keep someone keep light heavy indicate.\nSon improve both. Budget home mean evidence crime by.", "type": "methods" } ], "funding": [ { "funder": { "identifier": "03yrm5c26", "scheme": "ror", "name": "European Commission" }, "award": { "identifier": "0000-0002-1825-0097", "scheme": "orcid", "number": "246686", "title": "OpenAIRE" } } ], "formats": [ "application/pdf" ], "creators": [ { "person_or_org": { "type": "personal", "identifiers": [ { "identifier": "0000-0002-1825-0097", "scheme": "orcid" } ], "family_name": "Mercado", "given_name": "Jessica", "name": "Mercado, Jessica" }, "affiliations": [ { "identifiers": [ { "identifier": "03yrm5c26", "scheme": "ror" } ], "name": "Harris-Grimes" } ] }, { "person_or_org": { "type": "personal", "identifiers": [ { "identifier": "0000-0002-1825-0097", "scheme": "orcid" } ], "family_name": "Arnold", "given_name": "Rebecca", "name": "Arnold, Rebecca" }, "affiliations": [ { "identifiers": [ { "identifier": "03yrm5c26", "scheme": "ror" } ], "name": "Miller-Smith" } ] }, { "person_or_org": { "type": "personal", "identifiers": [ { "identifier": "0000-0002-1825-0097", "scheme": "orcid" } ], "family_name": "Lara", "given_name": "Sherri", "name": "Lara, Sherri" }, "affiliations": [ { "identifiers": [ { "identifier": "03yrm5c26", "scheme": "ror" } ], "name": "Jensen-Dunn" } ] }, { "person_or_org": { "type": "personal", "identifiers": [ { "identifier": "0000-0002-1825-0097", "scheme": "orcid" } ], "family_name": "Garcia", "given_name": "Steven", "name": "Garcia, Steven" }, "affiliations": [ { "identifiers": [ { "identifier": "03yrm5c26", "scheme": "ror" } ], "name": "Hernandez Group" } ] } ], "resource_type": { "id": "publication" }, "publication_date": "1971-12/1973-06-22", "publisher": "InvenioRDM", "additional_titles": [ { "lang": "eng", "type": "subtitle", "title": "a research data management platform" }, { "lang": "eng", "type": "alternativetitle", "title": "Anderson and Sons's gallery" } ], "version": "v0.0.1", "contributors": [ { "role": "rightsholder", "person_or_org": { "type": "personal", "family_name": "Cruz", "given_name": "Ashley", "name": "Cruz, Ashley" }, "affiliations": [ { "identifiers": [ { "identifier": "03yrm5c26", "scheme": "ror" } ], "name": "Clark-Garrett" } ] }, { "role": "rightsholder", "person_or_org": { "type": "personal", "family_name": "Peck", "given_name": "Abigail", "name": "Peck, Abigail" }, "affiliations": [ { "identifiers": [ { "identifier": "03yrm5c26", "scheme": "ror" } ], "name": "Barnes, Hall and Ramos" } ] }, { "role": "rightsholder", "person_or_org": { "type": "personal", "family_name": "Davies", "given_name": "Karen", "name": "Davies, Karen" }, "affiliations": [ { "identifiers": [ { "identifier": "03yrm5c26", "scheme": "ror" } ], "name": "Russell and Sons" } ] } ], "subjects": [ { "identifier": "03yrm5c26", "scheme": "ror", "subject": "child" }, { "identifier": "03yrm5c26", "scheme": "ror", "subject": "strategy" } ], "description": "Picture risk field article. Do meeting measure nothing option drug. Marriage test evidence. Whole will paper give thing task.\nLawyer music hard report game generation answer rock. Window great surface piece involve lay all. Hour far great he close when official surface......", "title": "Howard LLC's gallery" }, "created": "2021-02-26 10:28:02.245807", "updated": "2021-02-26 10:28:02.261941", "published": true, "status": "published", "conceptid": "62fe3-3t414", "revision_id": 1, "links": { "files": "https://127.0.0.1:5000/api/records/mrewd-axc44/files", "self": "https://127.0.0.1:5000/api/records/mrewd-axc44", "self_html": "https://127.0.0.1:5000/records/mrewd-axc44" } }, ... ], "total": 25 }, "links": { "self": "https://127.0.0.1:5000/api/records?page=1&size=25&sort=newest", "next": "https://127.0.0.1:5000/api/records?page=2&size=25&sort=newest" }, "sortBy": "newest" } </code></pre></div> <h4 id="notes">Notes<a class="headerlink" href="#notes" title="Permanent link">¶</a></h4> <ul> <li>The output is shortened for readability and your records will be different because they are generated randomly.</li> <li>You can use <a href="https://github.com/stedolan/jq">jq</a> for color highlighting:</li> </ul> <div class="highlight"><pre><code>curl -k -XGET https://127.0.0.1:5000/api/records | jq . </code></pre></div> <h3 id="create-records">Create records<a class="headerlink" href="#create-records" title="Permanent link">¶</a></h3> <div class="admonition info"> Authentication required All requests to the create-related REST API endpoints require authentication. To create a token, login to the application, click on your user -> <code>Applications</code> -> <code>New token</code>, enter a name and click on <code>Create</code>. Copy the token, since it will not be displayed again. </div> <h4 id="create-a-draft">Create a draft<a class="headerlink" href="#create-a-draft" title="Permanent link">¶</a></h4> You can create a new record draft using the API: <div class="highlight"><pre><code>curl -k -XPOST -H "Content-Type: application/json" -H "Authorization: Bearer <TOKEN>" https://127.0.0.1:5000/api/records -d '{ "access": { "record": "public", "files": "public" }, "files": { "enabled": true }, "metadata": { "creators": [ { "person_or_org": { "family_name": "Brown", "given_name": "Troy", "type": "personal" } }, { "person_or_org": { "name": "Troy Inc.", "type": "organizational" } } ], "publication_date": "2020-06-01", "resource_type": { "id": "image-photo" }, "title": "A Romans story" } }' </code></pre></div> <h4 id="publish-a-draft">Publish a draft<a class="headerlink" href="#publish-a-draft" title="Permanent link">¶</a></h4> To publish it, you can take the <code>"publish"</code> link from the response: <div class="highlight"><pre><code>"links": { "self": "https://127.0.0.1:5000/api/records/jnmmp-51n47/draft", "self_html": "https://127.0.0.1:5000/uploads/jnmmp-51n47", "files": "https://127.0.0.1:5000/api/records/jnmmp-51n47/draft/files", "latest": "https://127.0.0.1:5000/api/records/jnmmp-51n47/versions/latest", "latest_html": "https://127.0.0.1:5000/records/jnmmp-51n47/latest", "record": "https://127.0.0.1:5000/api/records/jnmmp-51n47", "record_html": "https://127.0.0.1:5000/records/jnmmp-51n47", "publish": "https://127.0.0.1:5000/api/records/jnmmp-51n47/draft/actions/publish", "versions": "https://127.0.0.1:5000/api/records/jnmmp-51n47/versions", "access_links": "https://127.0.0.1:5000/api/records/jnmmp-51n47/access/links", "reserve_doi": "https://127.0.0.1:5000/api/records/jnmmp-51n47/draft/pids/doi" } </code></pre></div> and <code>POST</code> to it: <div class="highlight"><pre><code>curl -k -XPOST -H "Authorization: Bearer <TOKEN>" https://127.0.0.1:5000/api/records/jnmmp-51n47/draft/actions/publish </code></pre></div> <h3 id="get-a-record">Get a record<a class="headerlink" href="#get-a-record" title="Permanent link">¶</a></h3> To confirm the record is published, you can search for it: <div class="highlight"><pre><code>curl -k -XGET https://127.0.0.1:5000/api/records?q=Gladiator | python3 -m json.tool </code></pre></div> or access it directly using the id from the publish response (e.g. <code>90xv7-xwd20</code>): <div class="highlight"><pre><code>curl -k -XGET https://127.0.0.1:5000/api/records/90xv7-xwd20 | python3 -m json.tool </code></pre></div> <h3 id="upload-a-file-to-a-record">Upload a file to a record<a class="headerlink" href="#upload-a-file-to-a-record" title="Permanent link">¶</a></h3> For demonstration purposes, we will attach this scientific photo to a record: <img alt="Very scientific picture of a shiba in autumn" src="../img/jaycee-xie-unsplash-shiba.png" /> Photo by <a href="https://unsplash.com/@jayceexie?utm_source=unsplash&utm_medium=referral&utm_content=creditCopyText">Jaycee Xie</a> on <a href="https://unsplash.com/@jayceexie?utm_source=unsplash&utm_medium=referral&utm_content=creditCopyText">Unsplash</a>. Save it as <code>leaf_shiba.png</code> in your current directory. First, we need to work with a draft, so we create one as per above: <div class="highlight"><pre><code>curl -k -XPOST -H "Content-Type: application/json" -H "Authorization: Bearer <TOKEN>" https://127.0.0.1:5000/api/records -d '{ ... }' </code></pre></div> Second, we start the upload process by initializing the file key: <div class="admonition warning"> Change the <code>recid</code> Change <code>jnmmp-51n47</code> in the URLs below for the recid of your record. </div> <div class="highlight"><pre><code>curl -k -XPOST https://127.0.0.1:5000/api/records/jnmmp-51n47/draft/files -H "Content-Type: application/json" -H "Authorization: Bearer <TOKEN>" -d '[ {"key": "leaf_shiba.png"} ]' </code></pre></div> This "pre-flight" API call will allow us to support third-party source/storage in the future. Third, we now upload the insightful picture by using the <code>"content"</code> link returned: <div class="highlight"><pre><code>curl -k -XPUT https://127.0.0.1:5000/api/records/jnmmp-51n47/draft/files/leaf_shiba.png/content -H "Content-Type: application/octet-stream" -H "Authorization: Bearer <TOKEN>" --data-binary @leaf_shiba.png </code></pre></div> Fourth, we complete the upload process by using the <code>"commit"</code> link returned: <div class="highlight"><pre><code>curl -k -XPOST -H "Authorization: Bearer <TOKEN>" https://127.0.0.1:5000/api/records/jnmmp-51n47/draft/files/leaf_shiba.png/commit </code></pre></div> Finally, we publish our updated record: <div class="highlight"><pre><code>curl -k -XPOST -H "Authorization: Bearer <TOKEN>" https://127.0.0.1:5000/api/records/jnmmp-51n47/draft/actions/publish </code></pre></div> This file can then be previewed on the record page and even downloaded. <h2 id="explore-the-api">Explore the API<a class="headerlink" href="#explore-the-api" title="Permanent link">¶</a></h2> To see what other API calls exist, go to the <a href="../../reference/rest_api_index/">API reference section</a>. <h2 id="stop-it">Stop it<a class="headerlink" href="#stop-it" title="Permanent link">¶</a></h2> If you want to temporarily stop the instance, without losing the data that was generated you can use the <code>stop</code> command: <div class="highlight"><pre><code>invenio-cli services stop </code></pre></div> Check the <a href="../destroy/">Cleanup section</a> if you wish to remove every reference to InvenioRDM from Docker (containers, images, networks, etc.). </article> </div> <script>var target=document.getElementById(location.hash.slice(1));target&&target.name&&(target.checked=target.name.startsWith("__tabbed_"))</script> </div> </main> <footer class="md-footer"> <nav class="md-footer__inner md-grid" aria-label="Footer" > <a href="../configuration/" class="md-footer__link md-footer__link--prev" aria-label="Previous: Configure"> <div 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