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Manacus_vitellinus - Ensembl genome browser 113

<!DOCTYPE html> <html lang="en-gb"> <head> <title>Manacus_vitellinus - Ensembl genome browser 113</title> <!--[if lte IE 7]><link rel="stylesheet" type="text/css" media="all" href="/minified/98adc89a8b4418c03a4c81d5bf76272d.ie7.css"/><![endif]--><!--[if gt IE 7]><link rel="stylesheet" type="text/css" media="all" href="/minified/98adc89a8b4418c03a4c81d5bf76272d.css"/><![endif]--><!--[if !IE]><!--><link rel="stylesheet" type="text/css" media="all" href="/minified/98adc89a8b4418c03a4c81d5bf76272d.css"/><!--<![endif]--><!--[if lte IE 7]><link rel="stylesheet" type="text/css" media="all" href="/minified/9bafd8bb591fb39bcb766b0160434c45.image.ie7.css"/><![endif]--><!--[if gt IE 7]><link rel="stylesheet" type="text/css" media="all" href="/minified/9bafd8bb591fb39bcb766b0160434c45.image.css"/><![endif]--><!--[if !IE]><!--><link rel="stylesheet" type="text/css" media="all" href="/minified/9bafd8bb591fb39bcb766b0160434c45.image.css"/><!--<![endif]--> <link rel="icon" type="image/png" 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alt="Ensembl mirror" title="Ensembl mirror" class="screen_hide_inline" style="width:170px;height:45px" /></div> <div class="mh print_hide"> <div class="account_holder"><div class="_account_holder"><div class="account-loading">Loading&hellip;</div><form action="/Ajax/accounts_dropdown"></form></div></div> <div class="tools_holder"><ul class="tools"><li><a class="constant" href="/Manacus_vitellinus/Tools/Blast">BLAST/BLAT</a></li><li><a class="constant" href="/info/docs/tools/vep/">VEP</a></li><li><a class="constant" href="/info/docs/tools/index.html">Tools</a></li><li><a class="constant" href="/biomart/martview">BioMart</a></li><li><a class="constant" rel="nofollow" href="/info/data/">Downloads</a></li><li><a class="constant" rel="nofollow" href="/info/">Help &amp; Docs</a></li><li class="last"><a class="constant" target="_blank" href="https://www.ensembl.info">Blog</a></li></ul><div class="more"><a href="#">More <span class="arrow">&#9660;</span></a></div></div> <div class="search_holder print_hide"> <div id="searchPanel" class="js_panel"> <input type="hidden" class="panel_type" value="SearchBox" /> <form action="/Manacus_vitellinus/Psychic"> <div class="search print_hide"> <div class="sites button"> <img class="search_image no-sprite badge-16" src="/i/species/Manacus_vitellinus.png" alt="" /> <img src="/i/search/down.gif" style="width:7px" alt="" /> <input type="hidden" name="site" value="ensembl" /> </div> <div> <label class="hidden" for="se_q">Search terms</label> <input class="query inactive" id="se_q" type="text" name="q" value="Search Golden-collared manakin&hellip;" data-role="none" onkeydown="if (event.keyCode == 13) { $(this).closest('form').submit(); return false; }" /> </div> <div class="button"><img src="/i/16/search.png" alt="Search&nbsp;&raquo;" onClick="$(this).closest('form').submit()" /></div> </div> <div class="site_menu hidden"> <div class="ensembl"><img class="no-sprite" src="/i/species/Manacus_vitellinus.png" class="badge-16" alt="Search Golden-collared manakin"/>Search Golden-collared manakin<input type="hidden" value="Search Golden-collared manakin&hellip;" /></div> <div class="ensembl_all"><img class="no-sprite" src="/i/search/ensembl.gif" class="badge-16" alt="Search all species"/>Search all species<input type="hidden" value="Search all species&hellip;" /></div> <div class="ensembl_genomes"><img class="no-sprite" src="/i/search/ensembl_genomes.gif" class="badge-16" alt="Search Ensembl genomes"/>Search Ensembl genomes<input type="hidden" value="Search Ensembl genomes&hellip;" /></div> <div class="vega"><img class="no-sprite" src="/i/search/vega.gif" class="badge-16" alt="Search Vega"/>Search Vega<input type="hidden" value="Search Vega&hellip;" /></div> <div class="ebi"><img class="no-sprite" src="/i/search/ebi.gif" class="badge-16" alt="Search EMBL-EBI"/>Search EMBL-EBI<input type="hidden" value="Search EMBL-EBI&hellip;" /></div> <div class="sanger"><img class="no-sprite" src="/i/search/sanger.gif" class="badge-16" alt="Search Sanger"/>Search Sanger<input type="hidden" value="Search Sanger&hellip;" /></div> </div> </form> </div> </div> </div> <div class="spbar_holder"><span class="header"><a href="/Manacus_vitellinus/Info/Index?db=core"><img src="/i/species/Manacus_vitellinus.png" class="badge-32"><span class="species">Golden-collared manakin</span> <span class="more">(ASM171598v2)</span></a></span> <span class="dropdown"><a class="toggle species" href="#" rel="species">&#9660;</a></span> <div class="dropdown species"><h4>Favourite species</h4><ul><li><a class="constant" href="/Homo_sapiens/Info/Index">Human</a></li><li><a class="constant" href="/Mus_musculus/Info/Index">Mouse</a></li><li><a class="constant" href="/Danio_rerio/Info/Index">Zebrafish</a></li></ul><div style="clear: both;padding:1px 0;background:none"></div><h4>All species</h4><ul><li><a class="constant" href="/Chelonoidis_abingdonii/Info/Index">Abingdon island giant tortoise</a></li><li><a class="constant" href="/Struthio_camelus_australis/Info/Index">African ostrich</a></li><li><a class="constant" href="/Gopherus_agassizii/Info/Index">Agassiz's desert tortoise</a></li><li><a class="constant" href="/Mus_spretus/Info/Index">Algerian mouse</a></li><li><a class="constant" href="/Vicugna_pacos/Info/Index">Alpaca</a></li><li><a class="constant" href="/Marmota_marmota_marmota/Info/Index">Alpine marmot</a></li><li><a class="constant" href="/Poecilia_formosa/Info/Index">Amazon molly</a></li><li><a class="constant" href="/Castor_canadensis/Info/Index">American beaver</a></li><li><a class="constant" href="/Bison_bison_bison/Info/Index">American bison</a></li><li><a class="constant" href="/Ursus_americanus/Info/Index">American black bear</a></li><li><a class="constant" href="/Neovison_vison/Info/Index">American mink</a></li><li><a class="constant" href="/Colobus_angolensis_palliatus/Info/Index">Angola colobus</a></li><li><a class="constant" href="/Camelus_dromedarius/Info/Index">Arabian camel</a></li><li><a class="constant" href="/Urocitellus_parryii/Info/Index">Arctic ground squirrel</a></li><li><a class="constant" href="/Salvator_merianae/Info/Index">Argentine black and white tegu</a></li><li><a class="constant" href="/Dasypus_novemcinctus/Info/Index">Armadillo</a></li><li><a class="constant" href="/Scleropages_formosus/Info/Index">Asian bonytongue</a></li><li><a class="constant" href="/Ursus_thibetanus_thibetanus/Info/Index">Asiatic black bear</a></li><li><a class="constant" href="/Gadus_morhua/Info/Index">Atlantic cod</a></li><li><a class="constant" href="/Gadus_morhua/Info/Strains">Atlantic cod strains</a></li><li><a class="constant" href="/Clupea_harengus/Info/Index">Atlantic herring </a></li><li><a class="constant" href="/Salmo_salar/Info/Index">Atlantic salmon</a></li><li><a class="constant" href="/Salmo_salar/Info/Strains">Atlantic salmon strains</a></li><li><a class="constant" href="/Crocodylus_porosus/Info/Index">Australian saltwater crocodile</a></li><li><a class="constant" href="/Labrus_bergylta/Info/Index">Ballan wrasse</a></li><li><a class="constant" href="/Lates_calcarifer/Info/Index">Barramundi perch</a></li><li><a class="constant" href="/Delphinapterus_leucas/Info/Index">Beluga whale</a></li><li><a class="constant" href="/Lonchura_striata_domestica/Info/Index">Bengalese finch</a></li><li><a class="constant" href="/Stegastes_partitus/Info/Index">Bicolor damselfish</a></li><li><a class="constant" href="/Rhinopithecus_bieti/Info/Index">Black snub-nosed monkey</a></li><li><a class="constant" href="/Sinocyclocheilus_anshuiensis/Info/Index">Blind barbel</a></li><li><a class="constant" href="/Oreochromis_aureus/Info/Index">Blue tilapia</a></li><li><a class="constant" href="/Cyanistes_caeruleus/Info/Index">Blue tit</a></li><li><a class="constant" href="/Balaenoptera_musculus/Info/Index">Blue whale</a></li><li><a class="constant" href="/Lepidothrix_coronata/Info/Index">Blue-crowned manakin</a></li><li><a class="constant" href="/Laticauda_laticaudata/Info/Index">Blue-ringed sea krait</a></li><li><a class="constant" href="/Gouania_willdenowi/Info/Index">Blunt-snouted clingfish</a></li><li><a class="constant" href="/Saimiri_boliviensis_boliviensis/Info/Index">Bolivian squirrel monkey</a></li><li><a class="constant" href="/Pan_paniscus/Info/Index">Bonobo</a></li><li><a class="constant" href="/Cavia_aperea/Info/Index">Brazilian guinea pig</a></li><li><a class="constant" href="/Salmo_trutta/Info/Index">Brown trout</a></li><li><a class="constant" href="/Melopsittacus_undulatus/Info/Index">Budgerigar</a></li><li><a class="constant" href="/Athene_cunicularia/Info/Index">Burrowing owl</a></li><li><a class="constant" href="/Haplochromis_burtoni/Info/Index">Burton's mouthbrooder</a></li><li><a class="constant" href="/Otolemur_garnettii/Info/Index">Bushbaby</a></li><li><a class="constant" href="/Ciona_intestinalis/Info/Index">C.intestinalis</a></li><li><a class="constant" href="/Ciona_savignyi/Info/Index">C.savignyi</a></li><li><a class="constant" href="/Caenorhabditis_elegans/Info/Index">Caenorhabditis elegans (Nematode, N2)</a></li><li><a class="constant" href="/Zalophus_californianus/Info/Index">California sea lion</a></li><li><a class="constant" href="/Lynx_canadensis/Info/Index">Canada lynx</a></li><li><a class="constant" href="/Felis_catus/Info/Index">Cat</a></li><li><a class="constant" href="/Pogona_vitticeps/Info/Index">Central bearded dragon</a></li><li><a class="constant" href="/Catagonus_wagneri/Info/Index">Chacoan peccary</a></li><li><a class="constant" href="/Cottoperca_gobio/Info/Index">Channel bull blenny</a></li><li><a class="constant" href="/Ictalurus_punctatus/Info/Index">Channel catfish</a></li><li><a class="constant" href="/Gallus_gallus/Info/Index">Chicken</a></li><li><a class="constant" href="/Gallus_gallus/Info/Breeds">Chicken breeds</a></li><li><a class="constant" href="/Nothoprocta_perdicaria/Info/Index">Chilean tinamou</a></li><li><a class="constant" href="/Pan_troglodytes/Info/Index">Chimpanzee</a></li><li><a class="constant" href="/Cricetulus_griseus_chok1gshd/Info/Index">Chinese hamster CHOK1GS</a></li><li><a class="constant" href="/Cricetulus_griseus_crigri/Info/Index">Chinese hamster CriGri</a></li><li><a class="constant" href="/Cricetulus_griseus_picr/Info/Index">Chinese hamster PICR</a></li><li><a class="constant" href="/Oryzias_sinensis/Info/Index">Chinese medaka</a></li><li><a class="constant" href="/Pelodiscus_sinensis/Info/Index">Chinese softshell turtle</a></li><li><a class="constant" href="/Oncorhynchus_tshawytscha/Info/Index">Chinook salmon</a></li><li><a class="constant" href="/Anabas_testudineus/Info/Index">Climbing perch</a></li><li><a class="constant" href="/Amphiprion_ocellaris/Info/Index">Clown anemonefish</a></li><li><a class="constant" href="/Latimeria_chalumnae/Info/Index">Coelacanth</a></li><li><a class="constant" href="/Oncorhynchus_kisutch/Info/Index">Coho salmon</a></li><li><a class="constant" href="/Ficedula_albicollis/Info/Index">Collared flycatcher</a></li><li><a class="constant" href="/Serinus_canaria/Info/Index">Common canary</a></li><li><a class="constant" href="/Cyprinus_carpio_carpio/Info/Index">Common carp</a></li><li><a class="constant" href="/Cyprinus_carpio_german_mirror/Info/Index">Common carp german mirror</a></li><li><a class="constant" href="/Cyprinus_carpio_hebao_red/Info/Index">Common carp hebao red</a></li><li><a class="constant" href="/Cyprinus_carpio_huanghe/Info/Index">Common carp huanghe</a></li><li><a class="constant" href="/Falco_tinnunculus/Info/Index">Common kestrel</a></li><li><a class="constant" href="/Chelydra_serpentina/Info/Index">Common snapping turtle</a></li><li><a class="constant" href="/Podarcis_muralis/Info/Index">Common wall lizard</a></li><li><a class="constant" href="/Vombatus_ursinus/Info/Index">Common wombat</a></li><li><a class="constant" href="/Propithecus_coquereli/Info/Index">Coquerel's sifaka</a></li><li><a class="constant" href="/Bos_taurus/Info/Index">Cow</a></li><li><a class="constant" href="/Macaca_fascicularis/Info/Index">Crab-eating macaque</a></li><li><a class="constant" href="/Fukomys_damarensis/Info/Index">Damara mole rat</a></li><li><a class="constant" href="/Junco_hyemalis/Info/Index">Dark-eyed junco</a></li><li><a class="constant" href="/Spermophilus_dauricus/Info/Index">Daurian ground squirrel</a></li><li><a class="constant" href="/Octodon_degus/Info/Index">Degu</a></li><li><a class="constant" href="/Denticeps_clupeoides/Info/Index">Denticle herring</a></li><li><a class="constant" href="/Canis_lupus_dingo/Info/Index">Dingo</a></li><li><a class="constant" href="/Canis_lupus_familiaris/Info/Index">Dog</a></li><li><a class="constant" href="/Canis_lupus_familiaris/Info/Breeds">Dog breeds</a></li><li><a class="constant" href="/Tursiops_truncatus/Info/Index">Dolphin</a></li><li><a class="constant" href="/Bos_grunniens/Info/Index">Domestic yak</a></li><li><a class="constant" href="/Equus_asinus/Info/Index">Donkey</a></li><li><a class="constant" href="/Mandrillus_leucophaeus/Info/Index">Drill</a></li><li><a class="constant" href="/Drosophila_melanogaster/Info/Index">Drosophila melanogaster (Fruit fly)</a></li><li><a class="constant" href="/Anas_platyrhynchos_platyrhynchos/Info/Index">Duck</a></li><li><a class="constant" href="/Pseudonaja_textilis/Info/Index">Eastern brown snake</a></li><li><a class="constant" href="/Buteo_japonicus/Info/Index">Eastern buzzard</a></li><li><a class="constant" href="/Astatotilapia_calliptera/Info/Index">Eastern happy</a></li><li><a class="constant" href="/Anas_zonorhyncha/Info/Index">Eastern spot-billed duck</a></li><li><a class="constant" href="/Electrophorus_electricus/Info/Index">Electric eel</a></li><li><a class="constant" href="/Loxodonta_africana/Info/Index">Elephant</a></li><li><a class="constant" href="/Callorhinchus_milii/Info/Index">Elephant shark</a></li><li><a class="constant" href="/Dromaius_novaehollandiae/Info/Index">Emu</a></li><li><a class="constant" href="/Bubo_bubo/Info/Index">Eurasian eagle-owl</a></li><li><a class="constant" href="/Sciurus_vulgaris/Info/Index">Eurasian red squirrel</a></li><li><a class="constant" href="/Accipiter_nisus/Info/Index">Eurasian sparrowhawk</a></li><li><a class="constant" href="/Dicentrarchus_labrax/Info/Index">European seabass</a></li><li><a class="constant" href="/Mustela_putorius_furo/Info/Index">Ferret</a></li><li><a class="constant" href="/Takifugu_rubripes/Info/Index">Fugu</a></li><li><a class="constant" href="/Theropithecus_gelada/Info/Index">Gelada</a></li><li><a class="constant" href="/Ailuropoda_melanoleuca/Info/Index">Giant panda</a></li><li><a class="constant" href="/Nomascus_leucogenys/Info/Index">Gibbon</a></li><li><a class="constant" href="/Sparus_aurata/Info/Index">Gilthead seabream</a></li><li><a class="constant" href="/Capra_hircus/Info/Index">Goat</a></li><li><a class="constant" href="/Capra_hircus/Info/Breeds">Goat breeds</a></li><li><a class="constant" href="/Mesocricetus_auratus/Info/Index">Golden Hamster</a></li><li><a class="constant" href="/Aquila_chrysaetos_chrysaetos/Info/Index">Golden eagle</a></li><li><a class="constant" href="/Chrysolophus_pictus/Info/Index">Golden pheasant</a></li><li><a class="constant" href="/Rhinopithecus_roxellana/Info/Index">Golden snub-nosed monkey</a></li><li><a class="constant" href="/Manacus_vitellinus/Info/Index">Golden-collared manakin</a></li><li><a class="constant" href="/Sinocyclocheilus_grahami/Info/Index">Golden-line barbel</a></li><li><a class="constant" href="/Carassius_auratus/Info/Index">Goldfish</a></li><li><a class="constant" href="/Gopherus_evgoodei/Info/Index">Goodes thornscrub tortoise</a></li><li><a class="constant" href="/Gorilla_gorilla/Info/Index">Gorilla</a></li><li><a class="constant" href="/Erythrura_gouldiae/Info/Index">Gouldian finch</a></li><li><a class="constant" href="/Parus_major/Info/Index">Great Tit</a></li><li><a class="constant" href="/Apteryx_haastii/Info/Index">Great spotted kiwi</a></li><li><a class="constant" href="/Seriola_dumerili/Info/Index">Greater amberjack</a></li><li><a class="constant" href="/Prolemur_simus/Info/Index">Greater bamboo lemur</a></li><li><a class="constant" href="/Rhinolophus_ferrumequinum/Info/Index">Greater horseshoe bat</a></li><li><a class="constant" href="/Anolis_carolinensis/Info/Index">Green anole</a></li><li><a class="constant" href="/Cavia_porcellus/Info/Index">Guinea Pig</a></li><li><a class="constant" href="/Poecilia_reticulata/Info/Index">Guppy</a></li><li><a class="constant" href="/Eptatretus_burgeri/Info/Index">Hagfish</a></li><li><a class="constant" href="/Erinaceus_europaeus/Info/Index">Hedgehog</a></li><li><a class="constant" href="/Numida_meleagris/Info/Index">Helmeted guineafowl</a></li><li><a class="constant" href="/Sinocyclocheilus_rhinocerous/Info/Index">Horned golden-line barbel</a></li><li><a class="constant" href="/Equus_caballus/Info/Index">Horse</a></li><li><a class="constant" href="/Hucho_hucho/Info/Index">Huchen</a></li><li><a class="constant" href="/Homo_sapiens/Info/Index">Human</a></li><li><a class="constant" href="/Bos_indicus_hybrid/Info/Index">Hybrid - Bos Indicus</a></li><li><a class="constant" href="/Bos_taurus_hybrid/Info/Index">Hybrid - Bos Taurus</a></li><li><a class="constant" href="/Procavia_capensis/Info/Index">Hyrax</a></li><li><a class="constant" href="/Naja_naja/Info/Index">Indian cobra</a></li><li><a class="constant" href="/Parambassis_ranga/Info/Index">Indian glassy fish</a></li><li><a class="constant" href="/Oryzias_melastigma/Info/Index">Indian medaka</a></li><li><a class="constant" href="/Pavo_cristatus/Info/Index">Indian peafowl</a></li><li><a class="constant" href="/Oryzias_latipes_hni/Info/Index">Japanese medaka HNI</a></li><li><a class="constant" href="/Oryzias_latipes_hsok/Info/Index">Japanese medaka HSOK</a></li><li><a class="constant" href="/Oryzias_latipes/Info/Index">Japanese medaka HdrR</a></li><li><a class="constant" href="/Coturnix_japonica/Info/Index">Japanese quail</a></li><li><a class="constant" href="/Oryzias_javanicus/Info/Index">Javanese ricefish</a></li><li><a class="constant" href="/Salarias_fasciatus/Info/Index">Jewelled blenny</a></li><li><a class="constant" href="/Strigops_habroptila/Info/Index">Kakapo</a></li><li><a class="constant" href="/Dipodomys_ordii/Info/Index">Kangaroo rat</a></li><li><a class="constant" href="/Phascolarctos_cinereus/Info/Index">Koala</a></li><li><a class="constant" href="/Varanus_komodoensis/Info/Index">Komodo dragon</a></li><li><a class="constant" href="/Petromyzon_marinus/Info/Index">Lamprey</a></li><li><a class="constant" href="/Larimichthys_crocea/Info/Index">Large yellow croaker</a></li><li><a class="constant" href="/Leptobrachium_leishanense/Info/Index">Leishan spiny toad</a></li><li><a class="constant" href="/Panthera_pardus/Info/Index">Leopard</a></li><li><a class="constant" href="/Jaculus_jaculus/Info/Index">Lesser Egyptian jerboa</a></li><li><a class="constant" href="/Echinops_telfairi/Info/Index">Lesser hedgehog tenrec</a></li><li><a class="constant" href="/Panthera_leo/Info/Index">Lion</a></li><li><a class="constant" href="/Apteryx_owenii/Info/Index">Little spotted kiwi</a></li><li><a class="constant" href="/Echeneis_naucrates/Info/Index">Live sharksucker</a></li><li><a class="constant" href="/Chinchilla_lanigera/Info/Index">Long-tailed chinchilla</a></li><li><a class="constant" href="/Cyclopterus_lumpus/Info/Index">Lumpfish</a></li><li><a class="constant" href="/Neolamprologus_brichardi/Info/Index">Lyretail cichlid</a></li><li><a class="constant" href="/Aotus_nancymaae/Info/Index">Ma's night monkey</a></li><li><a class="constant" href="/Macaca_mulatta/Info/Index">Macaque</a></li><li><a class="constant" href="/Notechis_scutatus/Info/Index">Mainland tiger snake</a></li><li><a class="constant" href="/Pundamilia_nyererei/Info/Index">Makobe Island cichlid</a></li><li><a class="constant" href="/Anas_platyrhynchos/Info/Index">Mallard</a></li><li><a class="constant" href="/Kryptolebias_marmoratus/Info/Index">Mangrove rivulus</a></li><li><a class="constant" href="/Geospiza_fortis/Info/Index">Medium ground-finch</a></li><li><a class="constant" href="/Suricata_suricatta/Info/Index">Meerkat</a></li><li><a class="constant" href="/Pteropus_vampyrus/Info/Index">Megabat</a></li><li><a class="constant" href="/Astyanax_mexicanus/Info/Index">Mexican tetra</a></li><li><a class="constant" href="/Myotis_lucifugus/Info/Index">Microbat</a></li><li><a class="constant" href="/Amphilophus_citrinellus/Info/Index">Midas cichlid</a></li><li><a class="constant" href="/Meriones_unguiculatus/Info/Index">Mongolian gerbil</a></li><li><a class="constant" href="/Xiphophorus_couchianus/Info/Index">Monterrey platyfish</a></li><li><a class="constant" 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capuchin</a></li><li><a class="constant" href="/Paramormyrops_kingsleyae/Info/Index">Paramormyrops kingsleyae</a></li><li><a class="constant" href="/Periophthalmus_magnuspinnatus/Info/Index">Periophthalmus magnuspinnatus</a></li><li><a class="constant" href="/Sus_scrofa/Info/Index">Pig</a></li><li><a class="constant" href="/Sus_scrofa/Info/Breeds">Pig breeds</a></li><li><a class="constant" href="/Macaca_nemestrina/Info/Index">Pig-tailed macaque</a></li><li><a class="constant" href="/Ochotona_princeps/Info/Index">Pika</a></li><li><a class="constant" href="/Sander_lucioperca/Info/Index">Pike-perch</a></li><li><a class="constant" href="/Myripristis_murdjan/Info/Index">Pinecone soldierfish</a></li><li><a class="constant" href="/Anser_brachyrhynchus/Info/Index">Pink-footed goose</a></li><li><a class="constant" href="/Xiphophorus_maculatus/Info/Index">Platyfish</a></li><li><a class="constant" href="/Ornithorhynchus_anatinus/Info/Index">Platypus</a></li><li><a class="constant" 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href="/Danio_rerio/Info/Index">Zebrafish</a></li><li><a class="constant" href="/Mastacembelus_armatus/Info/Index">Zig-zag eel</a></li></ul></div></div> </div> <div id="main_holder"> <div id="widemain"> <div class="panel js_panel"> <input type="hidden" class="panel_type" value="Content" /> <div class="content"> <div class="column-wrapper"> <div class="column-one"> <div class="column-padding no-left-margin species-box"> <a href="/Manacus_vitellinus"><img class="badge-48" src="/i/species/Manacus_vitellinus.png" class="species-img float-left" alt="" /></a> <h1 class="no-bottom-margin">Golden-collared manakin assembly and gene annotation</h1> </div> </div> </div> <div class="column-wrapper"> <div class="column-two"> <div class="column-padding no-left-margin"><h2 id="assembly">Assembly</h2><p>The ASM171598v2 assembly was submitted by Smithsonian Institution National Museum of Natural History on May 2018. The assembly is on scaffold level, consisting of 29,371 contigs assembled into 15,315 scaffolds. The N50 size is the length such that 50% of the assembled genome lies in blocks of the N50 size or longer. The N50 length for the contigs is 194,737 while the scaffold N50 is 16,643,792.</p><h2 id="genebuild">Gene annotation</h2><p>The gene annotation process was carried out using a combination of protein-to-genome alignments, annotation mapping from a suitable reference species and RNA-seq alignments (where RNA-seq data with appropriate meta data were publicly available). For each candidate gene region, a selection process was applied to choose the most appropriate set of transcripts based on evolutionary distance, experimental evidence for the source data and quality of the alignments.</br>Small ncRNAs were obtained using a combination of BLAST and Infernal/RNAfold.</br> Pseudogenes were calculated by looking at genes with a large percentage of non-biological introns (introns of &lt;10bp), where the gene was covered in repeats, or where the gene was single exon and evidence of a functional multi-exon paralog was found elsewhere in the genome.</br> lincRNAs were generated via RNA-seq data where no evidence of protein homology or protein domains could be found in the transcript.</p> <ul> <li><a href="/info/genome/genebuild/2019_04_bird_clade_gene_annotation.pdf">Detailed information on bird clade genebuild</a> (PDF)</li> </ul> <p>In accordance with the <a href="https://en.wikipedia.org/wiki/Fort_Lauderdale_Agreement">Fort Lauderdale Agreement</a>, please check the publication status of the genome/assembly before publishing any genome-wide analyses using these data.</p> <h2>More information</h2> <p>General information about this species can be found in <a href="http://en.wikipedia.org/wiki/Manacus_vitellinus" rel="external">Wikipedia</a>. </p></div> </div> <div class="column-two"> <div class="column-padding annotation-stats"><h2>Statistics</h2><h3>Summary</h3> <table class="autocenter ss" style="width: 100%" cellpadding="0" cellspacing="0"> <tbody><tr class="bg3"><td style="text-align:left;width:30%"><b>Assembly</b></td><td style="text-align:left;width:70%">ASM171598v2, INSDC Assembly <a href="//www.ebi.ac.uk/ena/data/view/GCA_001715985.2" rel="external">GCA_001715985.2</a>, May 2018</td></tr><tr class="bg1"><td style="text-align:left;width:30%"><b>Base Pairs</b></td><td style="text-align:left;width:70%">1,213,150,360</td></tr><tr class="bg3"><td style="width:30%;text-align:left"><b>Golden Path Length</b></td><td style="text-align:left;width:70%">1,213,150,360</td></tr><tr class="bg1"><td style="text-align:left;width:30%"><b>Annotation provider</b></td><td style="text-align:left;width:70%">Ensembl</td></tr><tr class="bg3"><td style="text-align:left;width:30%"><b>Annotation method</b></td><td style="width:70%;text-align:left">Full genebuild</td></tr><tr class="bg1"><td style="text-align:left;width:30%"><b>Genebuild started</b></td><td style="text-align:left;width:70%">Oct 2018</td></tr><tr class="bg3"><td style="text-align:left;width:30%"><b>Genebuild released</b></td><td style="text-align:left;width:70%">Apr 2019</td></tr><tr class="bg1"><td style="text-align:left;width:30%"><b>Genebuild last updated/patched</b></td><td style="text-align:left;width:70%">Dec 2018</td></tr><tr class="bg3"><td style="width:30%;text-align:left"><b>Database version</b></td><td style="text-align:left;width:70%">113.2</td></tr></tbody> </table> <h3>Gene counts</h3> <table class="ss autocenter" style="width: 100%" cellpadding="0" cellspacing="0"> <tbody><tr class="bg3"><td style="width:30%;text-align:left"><span class="ht _ht"><span class="_ht_tip hidden">Gene/transcipt that contains an open reading frame (ORF).</span><b>Coding genes</b></span></td><td style="text-align:left;width:70%">15,928</td></tr><tr class="bg1"><td style="width:30%;text-align:left"><b>Non coding genes</b></td><td style="text-align:left;width:70%">2,590</td></tr><tr class="row-sub bg3"><td style="text-align:left;width:30%"><b>Small non coding genes</b></td><td style="width:70%;text-align:left">413</td></tr><tr class="row-sub bg1"><td style="text-align:left;width:30%"><b>Long non coding genes</b></td><td style="width:70%;text-align:left">2,054</td></tr><tr class="row-sub bg3"><td style="text-align:left;width:30%"><b>Misc non coding genes</b></td><td style="width:70%;text-align:left">123</td></tr><tr class="bg1"><td style="text-align:left;width:30%"><span class="ht _ht"><span class="_ht_tip hidden">A gene that has homology to known protein-coding genes but contain a frameshift and/or stop codon(s) which disrupts the ORF. Thought to have arisen through duplication followed by loss of function.</span><b>Pseudogenes</b></span></td><td style="text-align:left;width:70%">103</td></tr><tr class="bg3"><td style="width:30%;text-align:left"><span class="ht _ht"><span class="_ht_tip hidden">A transcript is the operational unit of a gene. In a genomic context, transcripts consist of one or more exons, with adjoining exons being separated by introns. The exons/introns are transcribed and then the introns spliced out. Transcripts may or may not encode a protein</span><b>Gene transcripts</b></span></td><td style="text-align:left;width:70%">30,531</td></tr></tbody> </table> <h3>Other</h3> <table class="ss autocenter" style="width: 100%" cellpadding="0" cellspacing="0"> <tbody><tr class="bg3"><td style="text-align:left;width:30%"><b>Genscan gene predictions</b></td><td style="text-align:left;width:70%">46,800</td></tr></tbody> </table> </div> </div> </div></div><p class="invisible">.</p> </div> </div> <div id="wide-footer"> <div class="column-wrapper"> <div class="column-two left"> <p>Ensembl release 113 - October 2024 &copy; <span class="print_hide"><a href="http://www.ebi.ac.uk/" class="nowrap constant">EMBL-EBI</a></span> <span class="screen_hide_inline">EMBL-EBI<br />http://useast.ensembl.org</span> </p> </div> <div class="column-two right print_hide"><p> <a class="modal_link" id="p_link" href="/Help/Permalink?url=http%3A%2F%2FOct2024.archive.ensembl.org">Permanent link</a> - <a class="modal_link" 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value=Sorex_araneus|Equus_caballus|Sinocyclocheilus_rhinocerous|Sus_scrofa_pb115|Canis_lupus_familiarisboxer|Naja_naja|Sus_scrofa_hampshire|Vulpes_vulpes|Amphilophus_citrinellus|Scophthalmus_maximus|Prolemur_simus|Tetraodon_nigroviridis|Ovis_aries_chinese_merino|Podarcis_muralis|Carlito_syrichta|Buteo_japonicus|Pogona_vitticeps|Cottoperca_gobio|Papio_anubis|Ursus_thibetanus_thibetanus|Mus_musculus_A_J|Fukomys_damarensis|Callithrix_jacchus|Fundulus_heteroclitus|Terrapene_carolina_triunguis|Apteryx_rowi|Gasterosteus_aculeatus_marine_syl|Sus_scrofa_usmarc|Capra_hircus_saanen_dairy|Erythrura_gouldiae|Canis_lupus_familiarisgreatdane|Zalophus_californianus|Ictidomys_tridecemlineatus|Rattus_norvegicus|Ailuropoda_melanoleuca|Mus_musculus_AKR_J|Cyanistes_caeruleus|Anas_zonorhyncha|Mus_musculus_129S1_SvImJ|Marmota_marmota_marmota|Gorilla_gorilla|Xiphophorus_maculatus|Macaca_nemestrina|Camarhynchus_parvulus|Ovis_aries_east_friesian|Sinocyclocheilus_anshuiensis|Mus_musculus_WSB_EiJ|Aquila_chrysaetos_chrysaetos|Poecilia_latipinna|Lynx_canadensis|Laticauda_laticaudata|Saimiri_boliviensis_boliviensis|Accipiter_nisus|Lepisosteus_oculatus|Jaculus_jaculus|Meleagris_gallopavo|Bos_taurus_hybrid|Pundamilia_nyererei|Capra_hircus|Colobus_angolensis_palliatus|Chelydra_serpentina|Macaca_mulatta|Mus_musculus_NOD_ShiLtJ|Mus_musculus_FVB_NJ|Gouania_willdenowi|Bos_taurus|Ochotona_princeps|Pseudonaja_textilis|Mus_musculus_C57BL_6NJ|Chrysolophus_pictus|Suricata_suricatta|Apteryx_owenii|Gasterosteus_aculeatus_marine_bam|Octodon_degus|Astatotilapia_calliptera|Caenorhabditis_elegans|Carassius_auratus|Monodon_monoceros|Bison_bison_bison|Canis_lupus_familiarisbasenji|Sus_scrofa_jinhua|Anas_platyrhynchos_platyrhynchos|Nomascus_leucogenys|Ovis_aries_hu|Takifugu_rubripes|Calidris_pugnax|Rhinopithecus_roxellana|Hippocampus_comes|Mus_musculus_DBA_2J|Mus_musculus_NZO_HlLtJ|Pan_troglodytes|Sus_scrofa_bamei|Labrus_bergylta|Ovis_aries_white_dorper|Camelus_dromedarius|Anser_cygnoides|Ovis_aries_texel|Pelodiscus_sinensis|Strigops_habroptila|Cyprinus_carpio_carpio|Salmo_salar_european_origin_alta|Choloepus_hoffmanni|Panthera_tigris_altaica|Gallus_gallus_GCA_016700215.2|Nothoprocta_perdicaria|Anabas_testudineus|Ovis_aries_polled_dorset|Piliocolobus_tephrosceles|Cervus_hanglu_yarkandensis|Electrophorus_electricus|Amphiprion_percula|Myripristis_murdjan|Sander_lucioperca|Equus_asinus|Cyprinus_carpio_huanghe|Astyanax_mexicanus|Zosterops_lateralis_melanops|Chelonoidis_abingdonii|Sus_scrofa_duroc|Monopterus_albus|Parambassis_ranga|Gopherus_evgoodei|Loxodonta_africana|Erinaceus_europaeus|Amphiprion_ocellaris|Oreochromis_niloticus|Mustela_putorius_furo|Bos_mutus|Felis_catus|Capra_hircus_xinong_saanen_dairy|Kryptolebias_marmoratus|Sus_scrofa_meishan_GCA_017957985.1|Denticeps_clupeoides|Oryzias_latipes_hsok|Oncorhynchus_mykiss|Panthera_leo|Danio_rerio|Tupaia_belangeri|Cyprinus_carpio_hebao_red|Rattus_norvegicus_SHRUtx|Neovison_vison|Balaenoptera_musculus|Sus_scrofa_tibetan|Dasypus_novemcinctus|Apteryx_haastii|Ursus_maritimus|Coturnix_japonica|Catagonus_wagneri|Salvator_merianae|Numida_meleagris|Scleropages_formosus|Mus_musculus|Nothobranchius_furzeri|Lates_calcarifer|Corvus_moneduloides|Ursus_americanus|Phocoena_sinus|Poecilia_reticulata|Stachyris_ruficeps|Sphaeramia_orbicularis|Sus_scrofa_ningxiang|Canis_lupus_familiaris|Pteropus_vampyrus|Pan_paniscus|Cavia_porcellus|Zonotrichia_albicollis|Otus_sunia|Cercocebus_atys|Sarcophilus_harrisii|Gadus_morhua_celtic_sea|Ovis_aries_qiaoke|Falco_tinnunculus|Heterocephalus_glaber_female|Salarias_fasciatus|Dipodomys_ordii|Theropithecus_gelada|Ovis_aries_romanov|Cynoglossus_semilaevis|Sus_scrofa_bama_miniature|Dromaius_novaehollandiae|Oncorhynchus_kisutch|Gasterosteus_aculeatus_freshwater_bot|Oryzias_melastigma|Microcebus_murinus|Rhinopithecus_bieti|Ciona_intestinalis|Acanthochromis_polyacanthus|Canis_lupus_dingo|Ictalurus_punctatus|Mus_spicilegus|Mus_musculus_BALB_cJ|Phasianus_colchicus|Bos_indicus_hybrid|Notechis_scutatus|Homo_sapiens|Mus_pahari|Varanus_komodoensis|Junco_hyemalis|Aotus_nancymaae|Petromyzon_marinus|Oncorhynchus_tshawytscha|Vicugna_pacos|Cricetulus_griseus_crigri|Parus_major|Hucho_hucho|Lepidothrix_coronata|Betta_splendens|Lonchura_striata_domestica|Bubo_bubo|Leptobrachium_leishanense|Chinchilla_lanigera|Xiphophorus_couchianus|Sparus_aurata|Melopsittacus_undulatus|Heterocephalus_glaber_male|Poecilia_formosa|Otolemur_garnettii|Mastacembelus_armatus|Sus_scrofa|Canis_lupus_familiarisgermanshepherd|Sus_scrofa_largewhite|Cyclopterus_lumpus|Cricetulus_griseus_picr|Astyanax_mexicanus_pachon|Nannospalax_galili|Microtus_ochrogaster|Cricetulus_griseus_chok1gshd|Larimichthys_crocea|Sus_scrofa_landrace|Athene_cunicularia|Salmo_salar|Tursiops_truncatus|Mus_musculus_CBA_J|Xenopus_tropicalis|Cyprinus_carpio_german_mirror|Taeniopygia_guttata|Clupea_harengus|Sus_scrofa_euw1|Esox_lucius|Seriola_dumerili|Neolamprologus_brichardi|Salmo_salar_north_american_origin_brian|Crocodylus_porosus|Capra_hircus_blackbengal|Paramormyrops_kingsleyae|Sinocyclocheilus_grahami|Erpetoichthys_calabaricus|Struthio_camelus_australis|Poecilia_mexicana|Anas_platyrhynchos|Callorhinchus_milii|Meriones_unguiculatus|Monodelphis_domestica|Rhinolophus_ferrumequinum|Sus_scrofa_berkshire|Rattus_norvegicus_WKYBbb|Mus_musculus_C3H_HeJ|Seriola_lalandi_dorsalis|Gopherus_agassizii|Manacus_vitellinus|Cairina_moschata_domestica|Sciurus_vulgaris|Strix_occidentalis_caurina|Mus_musculus_LP_J|Pavo_cristatus|Catharus_ustulatus|Mola_mola|Echinops_telfairi|Eptatretus_burgeri|Cebus_imitator|Oryzias_sinensis|Anolis_carolinensis|Gadus_morhua|Neogobius_melanostomus|Oryzias_javanicus|Panthera_pardus|Oreochromis_aureus|Notamacropus_eugenii|Sus_scrofa_nihs_2020|Urocitellus_parryii|Mus_musculus_PWK_PhJ|Ficedula_albicollis|Mesocricetus_auratus|Serinus_canaria|Anser_brachyrhynchus|Latimeria_chalumnae|Ovis_aries_rambouillet|Pongo_abelii|Macaca_fascicularis|Maylandia_zebra|Gallus_gallus|Stegastes_partitus|Spermophilus_dauricus|Gallus_gallus_GCA_000002315.5|Calidris_pygmaea|Geospiza_fortis|Amazona_collaria|Delphinapterus_leucas|Salmo_trutta|Bos_grunniens|Myotis_lucifugus|Mus_caroli|Phascolarctos_cinereus|Ornithorhynchus_anatinus|Mandrillus_leucophaeus|Peromyscus_maniculatus_bairdii|Saccharomyces_cerevisiae|Echeneis_naucrates|Periophthalmus_magnuspinnatus|Oryctolagus_cuniculus|Cavia_aperea|Ovis_aries_kermani|Drosophila_melanogaster|Sus_scrofa_ossabaw_miniature|Oryzias_latipes_hni|Salmo_salar_north_american_atlantic_salmon|Sphenodon_punctatus|Mus_musculus_CAST_EiJ|Chlorocebus_sabaeus|Physeter_catodon|Haplochromis_burtoni|Pygocentrus_nattereri|Sus_scrofa_rongchang|Ciona_savignyi|Cyprinodon_variegatus|Gasterosteus_aculeatus|Procavia_capensis|Rattus_norvegicus_SHRSPBbbUtx|Castor_canadensis|Sus_scrofa_wuzhishan|Gambusia_affinis|Sus_scrofa_pietrain|Vombatus_ursinus|Malurus_cyaneus_samueli|Sus_scrofa_meishan|Pelusios_castaneus|Dicentrarchus_labrax|Propithecus_coquereli|Chrysemys_picta_bellii|Mus_spretus|Oryzias_latipes|Moschus_moschiferus> 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