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<!DOCTYPE html> <html xmlns="http://www.w3.org/1999/xhtml" lang="en"> <head> <title>BMRBj - Home_en</title> <base href="https://bmrbj.pdbj.org/" /> <meta http-equiv="Content-Type" content="text/html; charset=utf-8" /> <meta http-equiv="Content-Style-Type" content="text/css" /> <meta http-equiv="Content-Script-Type" content="text/javascript" /> <meta name="keywords" content="BioMagResBank,BMRB,BMRBj,PDBj-BMRB,wwPDB,NBDC,NMR-STAR,BMRB/XML,BMRB/RDF,BMRB/JSON" /> <meta name="viewport" content="width=device-width, initial-scale=1.0" /> <meta name="author" content="BMRBj" /> <link rel="icon" type="image/x-icon" href="favicon.ico" />  <link rel="stylesheet" href="assets/bootstrap/dist/css/bootstrap.min.css" />  <link rel="stylesheet" href="assets/bootstrap-submenu/dist/css/bootstrap-submenu.min.css" />  <link rel="stylesheet" href="assets/font-awesome/css/font-awesome.min.css" />  <link rel="stylesheet" href="assets/typeahead.js-bootstrap3.less/typeahead.css" />  <link rel="stylesheet" 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class="dropdown"> <a href="#" class="dropdown-toggle" data-toggle="dropdown">Deposition <span class="caret"></span></a> <ul class="dropdown-menu" role="menu"> <li class="dropdown-header">BMRB annotation services</li> <li><a href="https://deposit-pdbj.wwpdb.org/deposition/" rel="tooltip" data-toggle="tooltip" title="Deposit NMR structure of macromolecule">wwPDB OneDep (PDB-BMRB)</a></li> <li><a href="https://deposit-bmrb.pdbj.org" rel="tooltip" data-toggle="tooltip" title="Deposit NMR data of macromolecule">BMRBdep (BMRB Only)</a></li> <li><a href="http://smsdep.protein.osaka-u.ac.jp/bmrb-adit/" rel="tooltip" data-toggle="tooltip" title="Deposit NMR data of small molecule">SMSDep</a></li> <li class="divider"> <li class="dropdown-header">Tutorial for deposition</li> <li><a href="en/submission_manual.html" rel="tooltip" data-toggle="tooltip" title="Read first when you deposit NMR data">Submission manual</a></li> <li><a href="en/faq.html" rel="tooltip" data-toggle="tooltip" title="Policies and troubleshooting of deposition">FAQ</a></li> <li><a href="en/related_tools.html" rel="tooltip" data-toggle="tooltip" title="Tools for validation and deposition">Related Tools</a></li> <li><a href="en/standards.html" rel="tooltip" data-toggle="tooltip" title="Reference standards for describing NMR data">Standards and Data Formats</a></li> </ul> </li> <li class="dropdown"> <a href="#" class="dropdown-toggle" data-toggle="dropdown">Search <span class="caret"></span></a> <ul class="dropdown-menu" role="menu"> <li class="dropdown-header">Integrated search services</li> <li><a href="index_simple.html">Search BMRB and more</a></li> <li class="dropdown-header">Alternative search services</li> <li><a href="https://bmrbpub.pdbj.org/examples.html">Search BMRB/RDF with SPARQL</a></li> <li><a href="https://bmrbpub.pdbj.org/search/xml">Search BMRB/XML with XQuery</a></li> <li class="divider"></li> <li class="dropdown-header">Comprehensive SPARQL endpoints</li> <li><a href="https://rdfportal.org">RDF Portal</a></li> <li class="divider"></li> <li class="dropdown-header">Secondary database</li> <li><a href="en/mpm_search.html">Multiple Protein Model Search</a></li> </ul> </li> <li class="dropdown"> <a href="#" class="dropdown-toggle" data-toggle="dropdown" data-submenu>Archives <span class="caret"></span></a> <ul class="dropdown-menu" role="menu"> <li class="dropdown-header">Standard data</li> <li><a href="https://bmrb.pdbj.org/ftp/pub/bmrb/entry_lists/nmr-star3.1/" rel="tooltip" data-toggle="tooltip" title="Canonical representation of BMRB NMR-STAR data">NMR-STAR v3.1</a></li> <li><a href="https://bmrbpub.pdbj.org/archive/xml/" rel="tooltip" data-toggle="tooltip" title="XML representation of BMRB NMR-STAR data - complete version">BMRB/XML (complete)</a></li> <li><a href="https://bmrbpub.pdbj.org/archive/xml-noatom/" rel="tooltip" data-toggle="tooltip" title="XML representation of BMRB NMR-STAR data - noatom version">BMRB/XML (noatom)</a></li> <li><a href="https://bmrbpub.pdbj.org/archive/rdf/" rel="tooltip" data-toggle="tooltip" title="RDF representation of BMRB NMR-STAR data">BMRB/RDF (RDF/XML)</a></li> <li><a href="https://bmrbpub.pdbj.org/archive/rdf-nt/" rel="tooltip" data-toggle="tooltip" title="N-Triples representation of BMRB NMR-STAR data">BMRB/RDF (N-Triples)</a></li>  <li><a href="https://bmrbpub.pdbj.org/archive/json-noatom/" rel="tooltip" data-toggle="tooltip" title="JSON representation of BMRB NMR-STAR data - noatom version">BMRB/JSON (noatom)</a></li> <li class="divider"></li> <li class="dropdown-header">Associated data</li> <li><a href="https://bmrb.pdbj.org/ftp/pub/bmrb/entry_lists/nmr-star2.1/" rel="tooltip" data-toggle="tooltip" title="Obsolete representation of BMRB NMR-STAR data">NMR-STAR v2.1</a></li> <li><a href="https://bmrb.pdbj.org/ftp/pub/bmrb/nmr_pdb_integrated_data/coordinates_restraints_chemshifts/bmrb_plus_pdb/">NMR-STAR (BMRB+PDB)</a></li> <li><a href="https://bmrbpub.pdbj.org/archive/combined_restraints/">Combined NMR restraints (NMR-STAR v3.2 or NEF)</a></li> <li class="divider"></li> <li class="dropdown-header">Validation reports</li> <li><a href="https://bmrb.pdbj.org/ftp/pub/bmrb/validation_reports/AVS/">AVS validation reports</a></li> <li><a href="https://bmrb.pdbj.org/ftp/pub/bmrb/validation_reports/LACS/">LACS validation reports</a></li> <li><a href="https://bmrb.pdbj.org/ftp/pub/bmrb/validation_reports/SPARTA/">SPARTA validation reports</a></li> <li><a href="https://bmrbpub.pdbj.org/archive/cs_complete/">Completeness of assigned chemical shifts</a></li> <li><a href="https://bmrbpub.pdbj.org/archive/pdb_molprobity/">MolProbity structure validation reports</a></li> <li><a href="https://bmrbpub.pdbj.org/archive/cs_valid_reports/">Chemical shift validation reports</a></li> <li class="divider"></li> <li class="dropdown-header">Derived data</li> <li><a href="https://bmrb.pdbj.org/ftp/pub/bmrb/derived_data/csi/">CSI (Chemical Shift Index)</a></li> <li><a href="https://bmrb.pdbj.org/ftp/pub/bmrb/derived_data/cs_rosetta_structures/">CS-Rosetta structures</a></li> <li class="dropdown-submenu"><a href="#">Protein Blocks annotation</a><ul class="dropdown-menu"> <li><a href="https://bmrbpub.pdbj.org/archive/pb/">NMR structure</a></li> <li><a href="https://bmrbpub.pdbj.org/archive/pb_xray/">Related X-ray structure</a></li> </ul></li> <li class="dropdown-submenu"><a href="#">BLAST Output (XML)</a><ul class="dropdown-menu"> <li><a href="https://bmrb.pdbj.org/ftp/pub/bmrb/derived_data/blast_output/">haystack: BLAST (general sequence databases)</a></li> <li><a href="https://bmrbpub.pdbj.org/archive/blastout/bmrbaa/">haystack: BMRB (bmrbaa)</a></li> <li><a href="https://bmrbpub.pdbj.org/archive/blastout/pdbaa/">haystack: PDB (pdbaa)</a></li> <li><a href="https://bmrbpub.pdbj.org/archive/blastout/emdbaa/">haystack: EMDB (emdbaa)</a></li> <li><a href="https://bmrbpub.pdbj.org/archive/blastout/uniprotkb/">haystack: Swiss-Prot (uniprotkb)</a></li> <li><a href="https://bmrbpub.pdbj.org/archive/blastout/bmrbnt/">haystack: BMRB (bmrbnt)</a></li> <li><a href="https://bmrbpub.pdbj.org/archive/blastout/pdbnt/">haystack: PDB (pdbnt)</a></li> <li><a href="https://bmrbpub.pdbj.org/archive/blastout/emdbnt/">haystack: EMDB (emdbnt)</a></li> </ul></li> <li><a href="https://bmrbpub.pdbj.org/archive/blastdb/">BLAST database and FASTA sequences</a></li> <li><a href="https://bmrbpub.pdbj.org/archive/fasta/">Divided FASTA sequences</a></li> <li class="divider"></li> <li class="dropdown-header">Derived data accessed by PDB ID</li> <li><a href="https://bmrb.pdbj.org/ftp/pub/bmrb/derived_data/dssp/divided/">DSSP</a></li> <li><a href="https://bmrb.pdbj.org/ftp/pub/bmrb/derived_data/nucleic_acids/WC_chem_shift_comp/Wattos_to_use/">Watson Crick basepairing</a></li> <li><a href="https://bmrb.pdbj.org/ftp/pub/bmrb/derived_data/backcalc_chemshifts/divided/">Back calculated chemical shifts</a></li> <li><a href="https://bmrb.pdbj.org/ftp/pub/bmrb/pdb_molprobity/residue_files/combined/">All-atom structure validation</a></li> <li class="divider"></li> <li class="dropdown-header">Raw data</li> <li><a href="https://bmrb.pdbj.org/ftp/pub/bmrb/timedomain/" rel="tooltip" data-toggle="tooltip" title="Raw FID data relating BMRB entries">Timedomain data (BMRB entries)</a></li> <li><a href="https://bmrbpub.pdbj.org/archive/bms-nmrml/" rel="tooltip" data-toggle="tooltip" title="FID data of metabolomics entries in nmrML format">nmrML FID (metabolomics entries)</a></li> </ul> </li> <li class="dropdown"> <a href="#" class="dropdown-toggle" data-toggle="dropdown">Mirrors <span class="caret"></span></a> <ul class="dropdown-menu" role="menu"> <li class="dropdown-header">BMRB mirror sites</li> <li><a href="https://bmrb.pdbj.org">BMRBj, Osaka University</a></li> <li><a href="https://bmrb.io">BMRB, University of Connecticut</a></li>  <li class="divider"></li> <li class="dropdown-header">Collaborators</li> <li><a href="https://www.pdbj.org/" rel="popover" data-img="images/pdbj.png">Protein Data Bank Japan</a></li> <li><a href="https://www.wwpdb.org/" rel="popover" data-img="images/wwpdb.png">Worldwide Protein Data Bank</a></li> </ul> </li> <li class="dropdown"> <a href="#" class="dropdown-toggle" data-toggle="dropdown">Language <span class="caret"></span></a> <ul class="dropdown-menu" role="menu"> <li class="disabled"><a href="index_en.html">English</a></li> <li><a href="index_ja.html">Japanese</a></li> </ul> </li> <li class="dropdown"> <a href="#" class="dropdown-toggle" data-toggle="dropdown">About <span class="caret"></span></a> <ul class="dropdown-menu" role="menu"> <li><a href="https://pdbj.org/info/staff">Members</a></li> <li><a href="en/terms_of_use.html">Terms of Use</a></li> <li><a href="stats/">Statistics</a></li> </ul> </li> </ul> <form class="navbar-form navbar-right" role="form" method="post" action="/top_search/set_dbac" id="dbac_query_form"> <input type="text" class="form-control" placeholder="BMRB ID or Dep. Code" id="dbac_query" name="dbac" value=""/> </form> </div> </div> </div> <div id="feedback_button" class="hidden-xs"></div> <div class="container"> <div class="row">   <div class="panel panel-primary"> <div class="panel-heading"> <div class="panel-title pull-right"><a data-toggle="collapse" href="#query_history" title="Show query history"><i class="fa fa-clock-o"></i></a></div> <h3 class="panel-title">Search</h3> </div> <div class="panel-collapse collapse" id="query_history"> <div class="well well-sm text-right" style="overflow-x:hidden"> <div class="page-header"><h3>Query history</h3></div> <a class="collapse-get-history auto-refresh" href="#collapse_get_history"><i class="fa fa-refresh"></i></a> </div> </div> <div class="panel-body"> <form role="form" method="post" action="/top_search/all" id="top_search_form"> <div class="form-group"> <ul class="nav nav-tabs" role="tablist" id="top_search_method"> <li class="active"><a href="#top_search_all" data-toggle="tooltip" title="Search by words">Everything</a></li> <li><a href="#top_search_seq" data-toggle="tooltip" title="Search by sequence">Sequence</a></li> <li role="presentation" class="dropdown"> <a class="dropdown-toggle" data-toggle="dropdown tooltip" href="#top_search_cog" role="button-info" title="Change search settings"><i class="fa fa-cog"></i></a> </li> </ul> </div> <div id="top_search_input"> <div class="input-group"> <div class="input-group-btn"> <button type="button" class="btn btn-primary" id="top_search_filter_btn" data-toggle="tooltip" title="Change search filters"><i id="top_search_filter_btn_status" class="fa fa-caret-right"></i></button> </div> <input type="text" class="form-control" placeholder="e.g., Entry ID, Macromolecule, Gene Ontology or Author" id="top_search_query" name="query" value="" /> <div class="input-group-btn"> <button type="submit" class="btn btn-primary" data-toggle="tooltip" title="Search"><i class="fa fa-search"></i></button> </div> </div> <div id="top_search_filter" style="display:none"> <div class="input-group input-daterange" id="datepicker"> <span class="input-group-addon leader">Release date</span> <span class="input-group-addon">from</span> <input type="text" class="input form-control" autocomplete="off" placeholder="e.g., 20000101" name="date_from" /> <span class="input-group-addon">to</span> <input type="text" class="input form-control" autocomplete="off" placeholder="e.g., 20141231" name="date_to" /> </div> <div class="input-group"> <span class="input-group-addon leader">Authors</span> <input type="text" class="input form-control" placeholder="e.g., "O'Neil, F.K."" id="top_search_query_aut" name="aut_query" /> </div> <div class="input-group"> <span class="input-group-addon leader">Polymers</span> <input type="text" class="input form-control" placeholder="e.g., Kinase, Protease, etc." id="top_search_query_pol" name="pol_query" /> </div> <div class="input-group"> <span class="input-group-addon leader">Ligands</span> <input type="text" class="input form-control" placeholder="e.g., phosphatidylethanolamine, formula, SMILES, InChi, etc." id="top_search_query_lig" name="lig_query" /> </div> <div class="input-group"> <span class="input-group-addon leader">Organisms</span> <input type="text" class="input form-control" placeholder="e.g., "Homo sapiens"" id="top_search_query_org" name="org_query" /> </div> </div> </div> <div id="top_search_settings" style="display:none"> <div class="row"> <div class="col-md-6"> <h3 class="page-header">Resources</h3> <h4>Search for primary databases</h4> <div class="btn-group" data-toggle="buttons"> <label class="btn btn-info active"><input type="checkbox" autocomplete="off" name="db_list" value="bmr" checked />BMRB</label> <label class="btn btn-info active"><input type="checkbox" autocomplete="off" name="db_list" value="pdb" checked />PDB</label> <label class="btn btn-info active"><input type="checkbox" autocomplete="off" name="db_list" value="emdb" checked />EMDB</label> <label class="btn btn-info active"><input type="checkbox" autocomplete="off" name="db_list" value="uniprotkb" checked />Swiss-Prot</label> <label class="btn btn-info active"><input type="checkbox" autocomplete="off" name="db_list" value="bms" checked />Metabolomics</label> <label class="btn btn-info active"><input type="checkbox" autocomplete="off" name="db_list" value="le" checked />Ligand Expo</label> </div> <h4>Search for subsidiary databases</h4> <div class="btn-group" data-toggle="buttons"> <label class="btn btn-info active"><input type="checkbox" autocomplete="off" name="sub_db_list" value="pubmed" checked />PubMed</label> <label class="btn btn-info active"><input type="checkbox" autocomplete="off" name="sub_db_list" value="blast" checked />BLAST</label> <label class="btn btn-info active"><input type="checkbox" autocomplete="off" name="sub_db_list" value="intact" checked />IntAct</label> <label class="btn btn-info active"><input type="checkbox" autocomplete="off" name="sub_db_list" value="pubchem" checked />PubChem</label> </div> <h3 class="page-header">Display</h3> <h4>Hits per page</h4> <div class="btn-group" data-toggle="buttons"> <label class="btn btn-info active"><input type="radio" name="hits_per_page" value="10" autocomplete="off" checked />10</label> <label class="btn btn-info"><input type="radio" name="hits_per_page" value="20" autocomplete="off" />20</label> <label class="btn btn-info"><input type="radio" name="hits_per_page" value="50" autocomplete="off" />50</label> <label class="btn btn-info"><input type="radio" name="hits_per_page" value="100" autocomplete="off" />100</label> </div> <h4>Statistics</h4> <div class="btn-group" data-toggle="buttons"> <label class="btn btn-success active"><input type="radio" name="show_stat_info" value="on" autocomplete="off" checked />On</label> <label class="btn btn-success"><input type="radio" name="show_stat_info" value="off" autocomplete="off"/>Off</label> </div> <h3 class="page-header">Query <small><mark><i class="fa fa-info-circle"></i> Changes will take effect after "OK" button is selected.</mark></small></h3> <h4>Maximum hits</h4> <div class="btn-group" data-toggle="buttons"> <label class="btn btn-info"><input type="radio" name="max_hits" value="100" autocomplete="off" />100</label> <label class="btn btn-info active"><input type="radio" name="max_hits" value="1000" autocomplete="off" checked />1000</label> <label class="btn btn-info"><input type="radio" name="max_hits" value="10000" autocomplete="off" />10000</label> <label class="btn btn-info" data-toggle="tooltip" title="Allowed from accepted domains"><input type="radio" name="max_hits" value="unlimited" autocomplete="off" />Unlimited</label> </div> <h4>Default conjunction operator</h4> <div class="col-md-4"> <h5>Omni-box</h5> <div class="btn-group" data-toggle="buttons"> <label class="btn btn-info active"><input type="radio" name="def_conj_op" value="and" autocomplete="off" checked />AND</label> <label class="btn btn-info"><input type="radio" name="def_conj_op" value="or" autocomplete="off" />OR</label> </div> </div> <div class="col-md-4"> <h5>Search filter</h5> <div class="btn-group" data-toggle="buttons"> <label class="btn btn-info active"><input type="radio" name="fil_conj_op" value="and" autocomplete="off" checked />AND</label> <label class="btn btn-info"><input type="radio" name="fil_conj_op" value="or" autocomplete="off" />OR</label> </div> </div> </div> <div class="col-md-6"> <h3 class="page-header">Sequence search (BLAST)</h3> <h4>E-value</h4> <div class="btn-group" data-toggle="buttons"> <label class="btn btn-info"><input type="radio" name="evalue" value="4" autocomplete="off" />0.0001</label> <label class="btn btn-info active"><input type="radio" name="evalue" value="2" autocomplete="off" checked />0.01</label> <label class="btn btn-info"><input type="radio" name="evalue" value="0" autocomplete="off" />1.0</label> <label class="btn btn-info"><input type="radio" name="evalue" value="-2" autocomplete="off" />100.0</label> </div> <h4>Query sequence coverage</h4> <div class="btn-group" data-toggle="buttons"> <label class="btn btn-info active"><input type="radio" name="qcov_hsp_perc" value="80" autocomplete="off" checked />80 %</label> <label class="btn btn-info"><input type="radio" name="qcov_hsp_perc" value="60" autocomplete="off" />60 %</label> <label class="btn btn-info"><input type="radio" name="qcov_hsp_perc" value="40" autocomplete="off" />40 %</label> <label class="btn btn-info"><input type="radio" name="qcov_hsp_perc" value="20" autocomplete="off" />20 %</label> </div> <h3 class="page-header">Miscellaneous</h3> <h4>The number of previewed publications</h4> <div class="btn-group" data-toggle="buttons"> <label class="btn btn-info active"><input type="radio" name="preview_pub" value="on_demand" autocomplete="off" checked />Show on demand</label> <label class="btn btn-info"><input type="radio" name="preview_pub" value="primary" autocomplete="off" />Show primary citation</label> </div> <h4>Completeness of assigned chemical shift</h4> <div class="btn-group" data-toggle="buttons"> <label class="btn btn-info active"><input type="radio" name="show_cs_comp" value="on_demand" autocomplete="off" checked />Show on demand</label> <label class="btn btn-info"><input type="radio" name="show_cs_comp" value="always" autocomplete="off" />Show always</label> </div> <h4>Sequence chart about top aligned regions</h4> <div class="btn-group" data-toggle="buttons"> <label class="btn btn-info active"><input type="radio" name="show_related_chart" value="0" autocomplete="off" checked />Show on demand</label> <label class="btn btn-info"><input type="radio" name="show_related_chart" value="5" autocomplete="off" />Top 5</label> <label class="btn btn-info"><input type="radio" name="show_related_chart" value="10" autocomplete="off" />Top 10</label> <label class="btn btn-info"><input type="radio" name="show_related_chart" value="20" autocomplete="off" />Top 20</label> </div> <h4>Sequence chart about interacting regions</h4> <div class="btn-group" data-toggle="buttons"> <label class="btn btn-info active"><input type="radio" name="show_interacted_chart" value="on_demand" autocomplete="off" checked />Show on demand</label> <label class="btn btn-info"><input type="radio" name="show_interacted_chart" value="always" autocomplete="off" />Show always</label> </div> <h4>Hit context with highlight</h4> <div class="btn-group" data-toggle="buttons"> <label class="btn btn-info active"><input type="radio" name="show_hit_context" value="on_demand" autocomplete="off" checked />Show on demand</label> <label class="btn btn-info"><input type="radio" name="show_hit_context" value="always" autocomplete="off" />Show always</label> </div> <h4>Link destinations for BMRB, PDB and EMDB</h4> <div class="btn-group" data-toggle="buttons"> <label class="btn btn-info active"><input type="radio" name="region" value="tz_dependent" autocomplete="off" checked />Time zone dependent</label> <label class="btn btn-info"><input type="radio" name="region" value="asia" autocomplete="off" />Asia</label> <label class="btn btn-info"><input type="radio" name="region" value="europe" autocomplete="off" />Europa</label> <label class="btn btn-info"><input type="radio" name="region" value="america" autocomplete="off" />America</label> </div> </div> </div> <hr /> <div class="text-center"> <button type="button" class="btn btn-primary" id="top_search_settings_ok">OK</button> <button type="button" class="btn btn" id="top_search_settings_close">Close</button> </div> </div> </form> </div> <div class="text-right"><small><a href="search_help.html"><i class="fa fa-question-circle"></i> Search help </a></small></div> </div> <p class="text-justify">BMRBj (Biological Magnetic Resonance Data Bank Japan) at Osaka University supported by <a href="https://biosciencedbc.jp/en/" target="new">JST-NBDC (Japan Science and Technology Agency - National Bioscience Database Center)</a> contributes to the community for Biomolecular NMR by collection, annotation, validating and archiving experimental NMR data in collaboration with <a href="https://www.wwpdb.org/" target="new">wwPDB (Worldwide Protein Data Bank)</a>. Our mission is to empower scientists in their analysis of the structure, dynamics, and chemistry of biological systems and to support further development of biomolecular NMR spectroscopy. Please deposit your NMR structure and related NMR parameters through our deposition sites; <a href="https://deposit-pdbj.wwpdb.org/deposition/" target="new">OneDep</a>, <a href="https://deposit-bmrb.pdbj.org" target="new">BMRBdep</a>, <a href="http://deposit-sms.pdbj.org/bmrb-adit/" target="new">SMSDep</a>. The released data are available from our <a href="https://bmrb.pdbj.org/" target="new">BMRB mirror server</a>. Please try our new search service above which allows you to quickly find rich information of biomolecule such as function, sequence, structure, NMR data as well as interaction in multiple databases including <a href="https://bmrb.pdbj.org" target="new">BMRB</a>, <a href="https://pdbj.org/" target="new">PDB</a>, <a href="https://www.ebi.ac.uk/pdbe/emdb/" target="new">EMDB</a>, <a href="https://www.uniprot.org/" target="new">UniProt</a>, <a href="https://www.ebi.ac.uk/intact/ " target="new">IntAct</a>, <a href="https://bmrb.io/metabolomics/ " target="new">BMRB-Metabolomics</a> and <a href="http://ligand-expo.rcsb.org/ " target="new">Ligand Expo</a>.</p> <div class="panel panel-info"> <div class="panel-heading"> <h3 class="panel-title">Contents</h3> </div> <div class="panel-body"> <div class="row"> <div class="col-md-3"> <a class="btn btn-info btn-square btn-block text-left" href="en/flowchart.html"> <p class="text-left h5" style="margin-left: 4px; margin-right: 4px"> Workflow of NMR data deposition<br /><br /> Deposition, annotation and distribution<br /> </p> </a> </div> <div class="col-md-3"> <a class="btn btn-info btn-square btn-block text-left" href="en/onedep_or_smsdep.html"> <p class="text-left h5" style="margin-left: 4px; margin-right: 4px"> Should I choose OneDep or SMSDep?<br /><br /> Differences in deposition systems<br /> </p> </a> </div> <div class="col-md-3"> <a class="btn btn-info btn-square btn-block text-left" href="en/submission_manual.html"> <p class="text-left h5" style="margin-left: 4px; margin-right: 4px"> How to submit your data via ADIT-NMR<br /><br /> Step by step guide for data deposition<br /> </p> </a> </div> <div class="col-md-3"> <a class="btn btn-info btn-square btn-block text-left" href="en/faq.html"> <p class="text-left h5" style="margin-left: 4px; margin-right: 4px"> FAQ<br /><br /> Frequently Asked Questions<br /> </p> </a> </div> </div> <div class="row visible-md visible-lg"> <br /> </div> <div class="row"> <div class="col-md-3"> <a class="btn btn-info btn-square btn-block text-left" href="en/nmr_tool_box.html"> <p class="text-left h5" style="margin-left: 4px; margin-right: 4px"> NMR Tool Box<br/><br /> Tools for NMR analysis<br /> </p> </a> </div> <div class="col-md-3"> <a class="btn btn-info btn-square btn-block text-left" href="en/related_tools.html"> <p class="text-left h5" style="margin-left: 4px; margin-right: 4px"> Related tools<br /><br /> Tools for validation and deposition<br /> </p> </a> </div> <div class="col-md-3"> <a class="btn btn-info btn-square btn-block text-left" href="en/bmrbxtool.html"> <p class="text-left h5" style="margin-left: 4px; margin-right: 4px"> BMRBxTool and BMRBoTool<br /><br /> Tools for interoperability of BMRB<br /> </p> </a> </div> <div class="col-md-3"> <a class="btn btn-info btn-square btn-block text-left" href="https://bmrbpub.pdbj.org/"> <p class="text-left h5" style="margin-left: 4px; margin-right: 4px"> BMRBj Data Server<br /><br /> Server for BMRB/XML, /RDF, and /JSON<br /> </p> </a> </div> </div> </div> </div> <div id="stats_latest"></div> <div class="panel panel-default"> <div class="panel-heading"> <h3 class="panel-title">Information</h3> </div> <div class="panel-body"> <div class="well well-sm"> <h5><strong>Mar 14, 2024</strong></h5> <p>The article on validation of structural model in PDB using NMR restraints has been published in <a href="https://doi.org/10.1016/j.str.2024.02.011">Structure</a>.</p> </div>  <a class="btn btn-primary" data-toggle="collapse" href="#collapse_news_2023" role="button" aria-expanded="false" aria-controls="collapse_news_2023">BMRBj NEWS 2022</a> <div class="collapse" id="collapse_news_2023"> <br /> <div class="well well-sm"> <h5><strong>Jun 25 - Jul 1, 2023</strong></h5> <p>We attended <a href="https://2023.biohackathon.org">BioHackathon 2023</a>. The preprint of outcomes at the meeting has been published at <a href="https://biohackrxiv.org/yru4b/">BioHackrXive</a>.</p> </div> <div class="alert alert-info"> <h5><strong>Jun 14, 2023</strong></h5> <p>We are pleased to announce the release of corrected/combined NMR data files for existing NMR entries of the PDB Core Archive. <a href="https://www.wwpdb.org/news/news?year=2023#13-June-2023">wwPDB NEWS</a></p> </div> <div class="well well-sm"> <h5><strong>Sep 6, 2023</strong></h5> <p>A generation tool of alternative wwPDB validation information, <a href="en/pdbx_validation.html">pdbx-validation v4.4.29</a>.</p> </div> <div class="well well-sm"> <h5><strong>Jul 7, 2023</strong></h5> <p>A database replication tool based on XML Schema, <a href="en/xsd2pgschema.html">xsd2pgschema v4.4.7/5.3.7</a>, is available.</p> </div> <div class="well well-sm"> <h5><strong>Jan 6, 2023</strong></h5> <p>The article about activities of BMRB/BMRBj groups has been published in <a href="https://academic.oup.com/nar/article/51/D1/D368/6880708">Nucleic Acid Res.</a></p> </div> </div>  <a class="btn btn-primary" data-toggle="collapse" href="#collapse_news_2022" role="button" aria-expanded="false" aria-controls="collapse_news_2022">BMRBj NEWS 2022</a> <div class="collapse" id="collapse_news_2022"> <br /> <div class="well well-sm"> <h5><strong>Dec 19, 2022</strong></h5> <p>A database replication tool based on XML Schema, <a href="en/xsd2pgschema.html">xsd2pgschema v4.4.3/5.3.3</a>, is available.</p> </div> <div class="well well-sm"> <h5><strong>Dec 20, 2022</strong></h5> <p>A generation tool of alternative wwPDB validation information, <a href="en/pdbx_validation.html">pdbx-validation v4.4.14</a>.</p> </div> <div class="well well-sm"> <h5><strong>Jan 11, 2022</strong></h5> <p>A plot showing well-defined regions has been added to the content for combined NMR restraints.</p> </div> <div class="well well-sm"> <h5><strong>Jan 8, 2022</strong></h5> <p>The article about activities of BMRBj group has been published in <a href="https://onlinelibrary.wiley.com/doi/10.1002/pro.4211">Protein Science</a>.</p> </div> </div>  <a class="btn btn-primary" data-toggle="collapse" href="#collapse_news_2021" role="button" aria-expanded="false" aria-controls="collapse_news_2021">BMRBj NEWS 2021</a> <div class="collapse" id="collapse_news_2021"> <br /> <div class="well well-sm"> <h5><strong>Oct 5, 2021</strong></h5> <p>Incorporated <a href="https://alphafold.ebi.ac.uk">AlphaFold Protein Structure Database</a> sequence information as <a href="https://bmrbpub.pdbj.org/archive/blastout/afdb/">BLAST search results</a> for each BMRB entry.</p> </div> <div class="well well-sm"> <h5><strong>Sep 24, 2021</strong></h5> <p>Tools for <a href="en/bmrbxtool.html">BMRB/XML</a> and <a href="en/bmrbotool.html">BMRB/RDF</a> are update. The namespaces of BMRB/XML and BMRB/RDF will be changed respectively.</p> </div> <div class="well well-sm"> <h5><strong>Sep 21, 2021</strong></h5> <p>A nmrML converter for BMRB metabolomics entries, <a href="en/bmsxnmrml.html">BMSxNmrML v1.3.0</a>, is available.</p> </div> <div class="well well-sm"> <h5><strong>Aug 18, 2021</strong></h5> <p>Depositor can submit a release request for an On-Hold entry from the author view page by specifying PubMed ID of the primary citation.</p> </div> <div class="well well-sm"> <h5><strong>Jul 30, 2021</strong></h5> <p>Graphical content for the chemical shift validation reports is available.</p> </div> <div class="well well-sm"> <h5><strong>Jul 29, 2021</strong></h5> <p>We released <a href="https://bmrbpub.pdbj.org/archive/cs_valid_reports/">chemical shift validation reports</a> of all BMRB entries in JSON format. The schema is the same as for the combined NMR restraints report file.</p> </div> <div class="well well-sm"> <h5><strong>Jul 26, 2021</strong></h5> <p>Depositor can access refreshed author view page for uploaded or processed data files. The page contains detailed validation information and graphically represented summary content.</p> </div> <div class="well well-sm"> <h5><strong>Jul 13, 2021</strong></h5> <p>RCI and derived parameters (S<sup>2</sup>, NMR RMSD) plots are added as graphical contents for the NMR combined restraints.</p> </div> <div class="alert alert-info"> <h5><strong>Apr 26, 2021</strong></h5> <p>We have changed our group name to BMRBj (Biological Magnetic Resonance Data Bank Japan), formerly kwnon as PDBj-BMRB. We look forward to working with you.</p> </div> <div class="well well-sm"> <h5><strong>Apr 21, 2021</strong></h5> <p>Entries with extended PDB and CCD ID codes will be distributed in PDBx/mmCIF format only. <a href="https://pdbj.org/news/20210421">wwPDB NEWS</a></p> </div> <div class="well well-sm"> <h5><strong>Dec 28, 2021</strong></h5> <p>A database replication tool based on XML Schema, <a href="en/xsd2pgschema.html">xsd2pgschema v4.2.3/5.1.3</a>, is available.</p> </div> <div class="well well-sm"> <h5><strong>Jan 28, 2021</strong></h5> <p>Revised <a href="stats/">statistics</a> page on BMRB entries is accessible.</p> </div> <div class="well well-sm"> <h5><strong>Jan 21, 2021</strong></h5> <p>Graphical content for NMR combined restraints of PDB/BMRB entries is available.</p> </div> <div class="well well-sm"> <h5><strong>Dec 17, 2021</strong></h5> <p>A generation tool of alternative wwPDB validation information, <a href="en/pdbx_validation.html">pdbx-validation v4.4.4</a>.</p> </div> </div>  <a class="btn btn-primary" data-toggle="collapse" href="#collapse_news_2020" role="button" aria-expanded="false" aria-controls="collapse_news_2020">PDBj-BMRB NEWS 2020</a> <div class="collapse" id="collapse_news_2020"> <br /> <div class="well well-sm"> <h5><strong>Dec 24, 2020</strong></h5> <p>A database replication tool based on XML Schema, <a href="en/xsd2pgschema.html">xsd2pgschema v5.0.0</a>, is available, which requires JDK14 or later.</p> </div> <div class="well well-sm"> <h5><strong>Dec 16, 2020</strong></h5> <p>A generation tool of alternative wwPDB validation information, <a href="en/pdbx_validation.html">pdbx-validation v3.0.0</a>, is available, which supports NMR restraint validation.</p> </div> <div class="well well-sm"> <h5><strong>Nov 17, 2020</strong></h5> <p>We released a <a href="https://bmrbpub.pdbj.org/archive/combined_restraints/nmr-restraints-report-schema.json">JSON Schema</a> for the combined NMR restraints report file, which contains restraint statistics and diagnostic information.</p> </div> <div class="well well-sm"> <h5><strong>Oct 23, 2020</strong></h5> <p>We released an <a href="https://bmrbpub.pdbj.org/archive/combined_restraints/">archive</a> of combined NMR restraints (CS+MR) associated with PDB entries in both NMR-STAR and NEF formats. Polymer sequence, atom nomenclature and restraint data have been checked with the coordinate and remediated on the best effort basis. See also restraint statistics and diagnostic information of the combined NMR restraints reported in each JSON file. As of now, the archive contains 2463 <a href="https://bmrbpub.pdbj.org/archive/combined_restraints/valid_nef.txt">valid NEF restraint files</a>, which meet OneDep deposition requirements.</p> </div> <div class="well well-sm"> <h5><strong>Aug 31, 2020</strong></h5> <p>New Deposition server BMRBdep now available. ADIT-NMR will stop accepting new sessions on Sep 1st, and will stop allowing the completion of existing in-progress depositions on Dec.</p> </div> <div class="well well-sm"> <h5><strong>Aug 26, 2020</strong></h5> <p>The first PDB entries, 7JIA and 7JIY deposited by the NMR unified data, have been released.</p> </div> <div class="well well-sm"> <h5><strong>Nov 27, 2020</strong></h5> <p>A generation tool of alternative wwPDB validation information, <a href="en/pdbx_validation.html">pdbx-validation v2.0.16</a>, is available.</p> </div> <div class="well well-sm"> <h5><strong>Jul 22, 2020</strong></h5> <p>We have added content on emerging Coronavirus infectious disease (COVID-19) caused by Severe acute respiratory syndrome coronavirus 2 (<a href="https://www.ncbi.nlm.nih.gov/sars-cov-2/" target="_blank">SARS-CoV-2</a>).</p> </div> <div class="well well-sm"> <h5><strong>Nov 30, 2020</strong></h5> <p>A database replication tool based on XML Schema, <a href="en/xsd2pgschema.html">xsd2pgschema v4.1.4</a>, is available.</p> </div> <div class="well well-sm"> <h5><strong>May 4, 2020</strong></h5> <p>OneDep began accepting upload of NMR experimental data as a single file, either in NMR-STAR or NEF format.</p> </div> <div class="well well-sm"> <h5><strong>Feb 10, 2020</strong></h5> <p>A generation tool of alternative wwPDB validation information, <a href="en/pdbx_validation.html">pdbx-validation v2.0.3</a>, is available, which supports EM map/model validation.</p> </div> <div class="well well-sm"> <h5><strong>Feb 1, 2020</strong></h5> <p>The article about <a href="http://www.bmrb.wisc.edu">BMRB</a> has been published in <a href="https://pubmed.ncbi.nlm.nih.gov/32006287-biomagresbank-bmrb-as-a-resource-for-structural-biology/">Method Mol. Biol.</a></p> </div> <div class="well well-sm"> <h5><strong>Jan 15, 2020</strong></h5> <p>As of March 2020 the OneDep system will begin accepting upload of NMR experimental data as a single file, either in NMR-STAR or NEF format. <a href="https://pdbj.org/news/20200115">wwPDB NEWS</a></p> </div> </div>  <a class="btn btn-primary" data-toggle="collapse" href="#collapse_news_2019" role="button" aria-expanded="false" aria-controls="collapse_news_2019">PDBj-BMRB NEWS 2019</a> <div class="collapse" id="collapse_news_2019"> <br /> <div class="well well-sm"> <h5><strong>Dec 25, 2019</strong></h5> <p>A generation tool of alternative wwPDB validation information, <a href="en/pdbx_validation.html">pdbx-validation v2.0.1</a>, is available, which supports EM map/model validation.</p> </div> <div class="well well-sm"> <h5><strong>Dec 19, 2019</strong></h5> <p>A database replication tool based on XML Schema, <a href="en/xsd2pgschema.html">xsd2pgschema v4.0.5</a>, is available.</p> </div> <div class="well well-sm"> <h5><strong>Nov 19, 2019</strong></h5> <p>A generation tool of alternative wwPDB validation information, <a href="en/pdbx_validation.html">pdbx-validation v1.6.5</a>, is available.</p> </div> <div class="well well-sm"> <h5><strong>Feb 28, 2019</strong></h5> <p>A cross conversion environment of multi dimensional NMR spectra, <a href="en/xyza2pipe.html">xyza2pipe v1.0.4</a>, is available.</p> </div> <div class="well well-sm"> <h5><strong>Feb 21, 2019</strong></h5> <p><a href="https://www.wwpdb.org/news/news?year=2019#5c6ad3c5ea7d0653b99c8766">Submission of PDBx/mmCIF format files for crystallographic depositions to the PDB will be mandatory from July 1st 2019 onward. PDB format files will no longer be accepted for deposition of structures solved by MX techniques.</a></p> </div> <div class="well well-sm"> <h5><strong>Jan 25, 2019</strong></h5> <p><a href="http://svn.bmrb.wisc.edu/svn/nmr-star-dictionary/bmrb_only_files/adit_input/NMR-STAR.dic">NMR-STAR Dictionary v3.2.1.18</a> is available.</p> </div> <div class="well well-sm"> <h5><strong>Jan 18, 2019</strong></h5> <p><a href="http://svn.bmrb.wisc.edu/svn/nmr-star-dictionary/bmrb_only_files/adit_input/NMR-STAR.dic">NMR-STAR Dictionary v3.2.1.15</a> is available.</p> </div> <div class="well well-sm"> <h5><strong>Jan 15, 2019</strong></h5> <p><a href="https://bmrbpub.pdbj.org/resources.html">mmCIF-validation and mmCIF-validation-alt</a> are available via either HTTP or rsync protocol. Note that these archives are experimental and may be changed or replaced in the future.</p> </div> </div>  <a class="btn btn-primary" data-toggle="collapse" href="#collapse_news_2018" role="button" aria-expanded="false" aria-controls="collapse_news_2018">PDBj-BMRB NEWS 2018</a> <div class="collapse" id="collapse_news_2018"> <br /> <div class="well well-sm"> <h5><strong>Dec 22, 2018</strong></h5> <p>The article about <a href="http://www.wwpdb.org">NMR-STAR</a> has been published in <a href="https://link.springer.com/article/10.1007%2Fs10858-018-0220-3">J. Biomol. NMR.</a></p> </div> <div class="well well-sm"> <h5><strong>Dec 19, 2018</strong></h5> <p>A generation tool of alternative wwPDB validation information, <a href="en/pdbx_validation.html">pdbx-validation v1.4.0</a>, is available.</p> </div> <div class="well well-sm"> <h5><strong>Dec 6, 2018</strong></h5> <p>A database replication tool based on XML Schema, <a href="en/xsd2pgschema.html">xsd2pgschema v3.0.8</a>, is available.</p> </div> <div class="well well-sm"> <h5><strong>Nov 19, 2018</strong></h5> <p><a href="http://svn.bmrb.wisc.edu/svn/nmr-star-dictionary/bmrb_only_files/adit_input/NMR-STAR.dic">NMR-STAR Dictionary v3.2.1.12</a> is available.</p> </div> <div class="well well-sm"> <h5><strong>Oct 24, 2018</strong></h5> <p>The article about <a href="http://www.wwpdb.org">PDB archive</a> has been published in <a href="https://academic.oup.com/nar/advance-article/doi/10.1093/nar/gky949/5144142">Nucleic Acids Res.</a></p> </div> <div class="well well-sm"> <h5><strong>Oct 5, 2018</strong></h5> <p>We made a presentation about PDBj-BMRB activities and alternative wwPDB validation reports at <a href="https://events.biosciencedbc.jp/sympo/togo2018">The day of TOGO 2018</a>.</p> </div> <div class="well well-sm"> <h5><strong>Sep 16, 2018</strong></h5> <p>We made PDBj luncheon seminar about alternative wwPDB validation reports at <a href="https://www2.aeplan.co.jp/bsj2018/english/index.html">The 56st Annual Meeting of the Biophysical Society</a>.</p> </div> <div class="well well-sm"> <h5><strong>Aug 31, 2018</strong></h5> <p><a href="https://bmrbpub.pdbj.org">BMRB/XML, BMRB/RDF, BMRB/JSON</a>, and <a href="en/bmrb_rdb_snapshot.html">BMRB RDB Snapshot</a> archives are based on the NMR-STAR Dictionary v3.2.1.9.</p> </div> <div class="well well-sm"> <h5><strong>Aug 17, 2018</strong></h5> <p>NMR-STAR Dictionary v3.2.1.9 is available.</p> </div> <div class="well well-sm"> <h5><strong>Jul 20, 2018</strong></h5> <p>NMR data analysis tool, <a href="en/nmr_tool_box/MagRO_NMRViewCNN.html">MagRO-NMRView 2.01.15</a> released.</p> </div> <div class="well well-sm"> <h5><strong>Jul 5, 2018</strong></h5> <p>Launch web services enabling SSL.</p> </div> <div class="well well-sm"> <h5><strong>Jun 29, 2018</strong></h5> <p>A nmrML converter for BMRB metabolomics entries, <a href="en/bmsxnmrml.html">BMSxNmrML v1.2.0</a>, is available.</p> </div> <div class="well well-sm"> <h5><strong>Jun 14, 2018</strong></h5> <p>NMR data analysis tool, <a href="en/nmr_tool_box/MagRO_NMRViewCNN.html">MagRO-NMRView 2.01.13</a>, bug fixed version released.</p> </div> <div class="well well-sm"> <h5><strong>Jun 9, 2018</strong></h5> <p>Full-text index generator of OWL literal, <a href="en/owl_indexer.html">owl-indexer v1.2.5</a>, is available.</p> </div> <div class="well well-sm"> <h5><strong>Apr 17, 2018</strong></h5> <p><a href="https://bmrbpub.pdbj.org">BMRB/XML, BMRB/RDF, BMRB/JSON</a> and <a href="en/bmrb_rdb_snapshot.html">BMRB RDB Snapshot</a> archives are based on the NMR-STAR Dictionary v3.2.1.5.</p> </div> <div class="well well-sm"> <h5><strong>Apr 13, 2018</strong></h5> <p>NMR-STAR Dictionary v3.2.1.5 is available.</p> </div> <div class="well well-sm"> <h5><strong>Apr 9, 2018</strong></h5> <p><a href="https://bmrbpub.pdbj.org/resources.html">PDBML-validation and wwPDB/RDF-validation</a> are available via either HTTP or rsync protocol. Note that these archives are experimental and may be changed or replaced in the future.</p> </div> <div class="well well-sm"> <h5><strong>Apr 5, 2018</strong></h5> <p>NMR-STAR Dictionary v3.2.1.2 is available.</p> </div> <div class="well well-sm"> <h5><strong>Mar 29, 2018</strong></h5> <p>VirtualBox image (ova) file for MagRO-NMRView and Filt_Robot with CNN noise filter in <a href="en/nmr_tool_box.html">NMRToolBOX</a> has been updated.</p> </div> <div class="well well-sm"> <h5><strong>Feb 5, 2018</strong></h5> <p>NMR-STAR Dictionary v3.2.0.15 is available.</p> </div> <div class="well well-sm"> <h5><strong>Feb 9, 2018</strong></h5> <p><a href="https://bmrbpub.pdbj.org">BMRB/XML, BMRB/RDF, BMRB/JSON</a> and <a href="en/bmrb_rdb_snapshot.html">BMRB RDB Snapshot</a> archives are based on the NMR-STAR Dictionary v3.2.0.15.</p> </div> <div class="well well-sm"> <h5><strong>Feb 7, 2018</strong></h5> <p>We have moved SCM site for the following software developped by PDBj-BMRB, <a href="en/bmrbxtool.html">BMRBxTool</a>, <a href="en/bmrbotool.html">BMRBoTool</a>, and <a href="en/bmsxnmrml.html">BMSxNmrML</a>. The software is released under Apache Licence V2, respectively.</p> </div> <div class="well well-sm"> <h5><strong>Jan 24, 2018</strong></h5> <p>NMR-STAR Dictionary v3.2.0.13 is available.</p> </div> <div class="well well-sm"> <h5><strong>Jan 24, 2018</strong></h5> <p>BMRB/JSON archive is refreshed.</p> </div> </div>  <a class="btn btn-primary" data-toggle="collapse" href="#collapse_news_2017" role="button" aria-expanded="false" aria-controls="collapse_news_2017">PDBj-BMRB NEWS 2017</a> <div class="collapse" id="collapse_news_2017"> <br /> <div class="well well-sm"> <h5><strong>Dec 20, 2017</strong></h5> <p>A nmrML converter for BMRB metabolomics entries, <a href="en/bmsxnmrml.html">BMSxNmrML v1.1.0</a>, is available. <a href="https://bmrbpub.pdbj.org/archive/bms-nmrml/">nmrML documents</a> of the BMRB metabolomics entries are updated from v1.0.rc1 to v1.0.0.</p> </div> <div class="well well-sm"> <h5><strong>Dec 4, 2017</strong></h5> <p>Full-text index generator of OWL literal, <a href="en/owl_indexer.html">owl-indexer v1.2.2</a>, is available.</p> </div> <div class="well well-sm"> <h5><strong>Nov 22, 2017</strong></h5> <p><a href="pub/files/CNN_tutorial.zip">Quick instructions for CNN noise filter</a> are available.</p> </div> <div class="well well-sm"> <h5><strong>Nov 22, 2017</strong></h5> <p>VirtualBox image (ova) file for MagRO-NMRView and Filt_Robot with CNN noise filter in <a href="en/nmr_tool_box.html">NMRToolBOX</a> has been restored.</p> </div> <div class="well well-sm"> <h5><strong>Nov 8, 2017</strong></h5> <p><a href="en/bmrb_rdb_snapshot.html">BMRB RDB Snapshot</a> is based on PostgreSQL 10's tool chain.</p> </div> <div class="well well-sm"> <h5><strong>Oct 19, 2017</strong></h5> <p>A quick tool for fully automated peak identification and noise filtration using Deep Neural Networks, <a href="en/nmr_tool_box/Filt_Robot.html">Filt Robot</a>, is available.</p> </div> <div class="well well-sm"> <h5><strong>Oct 16, 2017</strong></h5> <p>The article about <a href="http://nmrml.org">nmrML</a> has been published in <a href="https://pubs.acs.org/doi/abs/10.1021/acs.analchem.7b02795">Analytical Chemistry</a>.</p> </div> <div class="well well-sm"> <h5><strong>Oct 12, 2017</strong></h5> <p>A cross conversion environment of multi dimensional NMR spectra, <a href="en/xyza2pipe.html">xyza2pipe v1.0.3</a>, is available.</p> </div> <div class="well well-sm"> <h5><strong>Oct 11, 2017</strong></h5> <p>NMR data analysis tool, <a href="en/nmr_tool_box/MagRO_NMRViewCNN.html">MagRO-NMRView 2.00.12</a>, is available. New feature "Noise/Signal recognition by Deep Neural Networks" added.</p> </div> <div class="well well-sm"> <h5><strong>Oct 10, 2017</strong></h5> <p>BMRB/XML, BMRB/RDF, BMRB/JSON, and BMRB RDB Snapshot archives are based on the NMR-STAR Dictionary v3.2.0.11.</p> </div> <div class="well well-sm"> <h5><strong>Sep 26, 2017</strong></h5> <p>NMR-STAR Dictionary v3.2.0.11 is available.</p> </div> <div class="well well-sm"> <h5><strong>Sep 18, 2017</strong></h5> <p>The article about Data-out activity of PDBj-BMRB group has been published in <a href="https://onlinelibrary.wiley.com/doi/10.1002/pro.3273/abstract">Protein Science</a>.</p> </div> <div class="well well-sm"> <h5><strong>Apr 25, 2017</strong></h5> <p>The article about NMRBox, A Resource for Biomolecular NMR Computation, has been published in <a href="https://www.sciencedirect.com/science/article/pii/S0006349517303004">Biophysical Journal</a>.</p> </div> <div class="well well-sm"> <h5><strong>Mar 7, 2017</strong></h5> <p>The article about <a href="https://deposit-pdbj.wwpdb.org/deposition/">OneDep</a> has been published in <a href="https://www.sciencedirect.com/science/article/pii/S0969212617300047?via%3Dihub">Structure</a>.</p> </div>  </div> <a class="btn btn-primary" data-toggle="collapse" href="#collapse_news_2016" role="button" aria-expanded="false" aria-controls="collapse_news_2016">PDBj-BMRB NEWS 2016</a> <div class="collapse" id="collapse_news_2016"> <br /> <div class="well well-sm"> <h5><strong>Oct 1, 2016</strong></h5> <p>Legacy ADIT-NMR deposition system has been retired. <a href="https://www.wwpdb.org/news/news?year=2016#57eebc02e6119df81075df88">wwPDB news</a><br />Updated <a href="http://deposit.bmrb.pdbj.org">ADIT-NMR</a> system will continue to accept NMR data associated with a structure currently not accepted by the wwPDB OneDep system (for example, relaxation data, and primary time-domain data) as well as experimental NMR data not associated with deposition of 3D coordinates (BMRB Only).</p> </div> <div class="well well-sm"> <h5><strong>May 31, 2016</strong></h5> <p>Legacy ADIT-NMR deposition system no longer accepts new session. Live sessions can be accessed until September 30th, 2016. Please use the wwPDB deposition system for new deposition. <a href="https://wwpdb.org/news/news?year=2016#30-March-2016-a">wwPDB news</a></p> </div> <div class="well well-sm"> <h5><strong>May 5, 2016</strong></h5> <p>The article about BMRB/XML, and BMRB/RDF has been published in <a href="https://jbiomedsem.biomedcentral.com/articles/10.1186/s13326-016-0057-1">Journal of Biomedical Semantics</a>.</p> </div> <div class="well well-sm"> <h5><strong>Mar 7, 2016</strong></h5> <p>Validation reports for NMR and EM structures are now available. <a href="https://wwpdb.org/news/news?year=2016#04-March-2016">wwPDB news</a></p> </div> <div class="well well-sm"> <h5><strong>Feb 1, 2016</strong></h5> <p><a href="https://deposit-pdbj.wwpdb.org/deposition/">wwPDB deposition system</a> is now available for NMR and EM structures.</p> </div> </div> </div> </div> <footer class="footer"> <div class="row"> <div class="col-xs-6 col-sm-4 col-md-2"><a href="https://pdbj.org"><img src="images/top/logo2_pdbj.png" class="center-block"/></a></div> <div class="col-xs-6 col-sm-4 col-md-2"><a href="https://bmrb.io"><img src="images/top/bmrb_logo.png" class="center-block"/></a></div> <div class="col-xs-6 col-sm-4 col-md-2"><a href="https://www.wwpdb.org"><img src="images/top/logo3_wwpdb.png" class="center-block"/></a></div> <div class="col-xs-6 col-sm-4 col-md-2"><a href="https://biosciencedbc.jp"><img src="images/top/logo4_nbdc.png" class="center-block"/></a></div> <div class="col-xs-6 col-sm-4 col-md-2"><a href="http://www.protein.osaka-u.ac.jp/biophys/bussei.html"><img src="images/top/logo5_mag.png" class="center-block"/></a></div> <div class="col-xs-6 col-sm-4 col-md-2"><a href="http://www.protein.osaka-u.ac.jp"><img src="images/top/logo6_ipr.png" class="center-block"/></a></div> </div> </footer> </div> </div>  <script src="assets/jquery/dist/jquery.min.js"></script>  <script src="assets/protonet/jquery.inview/jquery.inview.min.js"></script>  <script src="assets/bootstrap/dist/js/bootstrap.min.js"></script>  <script src="assets/typeahead.js/dist/typeahead.bundle.min.js"></script> <script src="assets/typeahead.js/dist/bloodhound.min.js"></script> <script src="assets/contactable-master/jquery.contactable.min.js"></script>  <script src="assets/bootstrap-datepicker/dist/js/bootstrap-datepicker.min.js"></script>  <script src="assets/bootstrap-submenu/dist/js/bootstrap-submenu.min.js"></script>  <script src="assets/highcharts/js/highcharts.js"></script> <script src="assets/highcharts/js/highcharts-more.js"></script> <script src="assets/highcharts/js/modules/exporting.js"></script>  <script src="assets/highlight.js/highlight.pack.js"></script>  <script src="assets/bmrbj/bmrbj.min.js"></script>  <script src="assets/highcharts-errorbar/highcharts-errorbar.min.js"></script> <script type="text/javascript">$(window).on('beforeunload', function(e) { $.ajax({ type: 'GET', url: 'top_search/clear' }); });</script> </body> </html>